HHsearch alignment for GI: 254780933 and conserved domain: COG0525
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=1965.12 Aligned_cols=870 Identities=49% Similarity=0.889 Sum_probs=806.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 87678978988999999987698644534548998089972844999986543788967799999876708983567788
Q gi|254780933|r 3 IDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPG 82 (947)
Q Consensus 3 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G 82 (947)
T Consensus 1 ~~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~--~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG 78 (877)
T COG0525 1 LPKTYDPKEIEEKWYKKWEESGYFKPDPNEDK--PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPG 78 (877)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 99877846650899877886698567887778--9727968979988865116545378999999998707973335798
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHH
Q ss_conf 15454089999999976745998777798999999999999999999999998083664279811588679999999999
Q gi|254780933|r 83 TDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFV 162 (947)
Q Consensus 83 ~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~ 162 (947)
T Consensus 79 ~DhAGIaTq~~VEk~l~~~-g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv 157 (877)
T COG0525 79 TDHAGIATQVVVEKQLAAE-GITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFV 157 (877)
T ss_pred CCCCCCHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 7778830899999999870-988010589999999999999998999999998478735553112679889999999999
Q ss_pred HHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 99988943313320220377678014868654146876699996530453000124555554424568871699982674
Q gi|254780933|r 163 VLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRP 242 (947)
Q Consensus 163 ~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrP 242 (947)
T Consensus 158 ~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~--------------------~~~i~VATTRP 217 (877)
T COG0525 158 RLYEKGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADG--------------------DGYLVVATTRP 217 (877)
T ss_pred HHHHCCCEEECCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEEECCCC--------------------CCEEEEEECCC
T ss_conf 9997894651487434788633402044500011003689999753899--------------------86389981686
Q ss_pred CHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCC
Q ss_conf 01010244444410001231115423320248657321000034212232032124778556566430465311101677
Q gi|254780933|r 243 ETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPE 322 (947)
Q Consensus 243 eTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~ 322 (947)
T Consensus 218 EtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~d 297 (877)
T COG0525 218 ETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDED 297 (877)
T ss_pred CCCCCCEEEEECCCCHHHHHHCCCEEECCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCCCEEEECCC
T ss_conf 30102669998998766686358889646889753353473347767874189716999406545301798720688899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEE
Q ss_conf 75213665444555434655465553100151233448889988887643332102232223566655324443122212
Q gi|254780933|r 323 AKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYL 402 (947)
Q Consensus 323 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi 402 (947)
T Consensus 298 G~in~~~-----------------~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfV 360 (877)
T COG0525 298 GRINEEA-----------------AGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFV 360 (877)
T ss_pred CEECCCC-----------------CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEECCEEEE
T ss_conf 7054677-----------------64458986999999999999968996766444541761167796020123242148
Q ss_pred CCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-CCCCEEECCCCHHHHHHCCCCCC
Q ss_conf 14542023334320024411214431135676410111232123545631026983-89988765762344542034556
Q gi|254780933|r 403 DAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYS-PDGKLFVENTEDAALRSAIDYYL 481 (947)
Q Consensus 403 ~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~~~~DW~ISRqr~WG~pIPvw~~-~~~~~~v~~~~~~~~~~~~~~~~ 481 (947)
T Consensus 361 k~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~~~-~~~~~----- 434 (877)
T COG0525 361 KVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEEEP-EDPAA----- 434 (877)
T ss_pred EHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCCCCEEECCCCC-CCHHH-----
T ss_conf 707526999998745984681688998899998638376422211317635159966998389678654-35354-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCEECCEEECCCCCCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 78776555410025688883101882410022020442333201011110001234555301245543210135677766
Q gi|254780933|r 482 SQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMG 561 (947)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtWfdSg~~p~~~l~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~ 561 (947)
T Consensus 435 ------------~~~~~~--~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~~ 500 (877)
T COG0525 435 ------------AEKCPK--EELEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRG 500 (877)
T ss_pred ------------HCCCCH--HCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCEECCCCHHHHHHHHHHHHHH
T ss_conf ------------246822--020578523233241156464006898744477735887300355313389999999999
Q ss_pred HHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 53012113378685200001443100012255431245653023320254034445431233556775434110111000
Q gi|254780933|r 562 LYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRN 641 (947)
Q Consensus 562 ~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r~ 641 (947)
T Consensus 501 ~~~~------~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rn 574 (877)
T COG0525 501 LHLT------GEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRN 574 (877)
T ss_pred HHHC------CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 9865------8999627898116786888887555788589799998848589999999536888665768899888999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 01234443333202444577676774333155567799999999888998753100102457776531001368898647
Q gi|254780933|r 642 FITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIK 721 (947)
Q Consensus 642 f~nKLwNa~rf~~~~~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K 721 (947)
T Consensus 575 F~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K 654 (877)
T COG0525 575 FLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAK 654 (877)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998749999985254457654332223548899999999999999999986237889999999969989899999821
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC--CCCHHHHHHHHHH
Q ss_conf 65305671444321000145676403456774489999999743566676756536635787877--4778989999999
Q gi|254780933|r 722 SILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLI--IDDSESIEEVNWI 799 (947)
Q Consensus 722 ~~l~~~~~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~--~~d~~~~~~~~~~ 799 (947)
T Consensus 655 ~~l~~~-~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~------~si~~~~~P~~~~~~~d~~a~~~~~~l 727 (877)
T COG0525 655 PRLYGG-EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT------ESIHLASWPEVDEELIDEEAEKEFELL 727 (877)
T ss_pred HHHCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCC------CEEEECCCCCCCHHHCCHHHHHHHHHH
T ss_conf 440285-7778999999999999999984887750157899865898------837841689863110237799999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCC-EEEECCC---CCCEEEEEECCEEEEEEC
Q ss_conf 999999998889808997774659996499899999999899999832461-5871148---887379992891999982
Q gi|254780933|r 800 IDLISKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLECHKCIIDRLSSGN-IIFADCP---PDRSIQIILDGMVLFLAI 875 (947)
Q Consensus 800 ~~ii~~iR~~R~~~~i~~k~~i~i~~~~~~~~~~~~l~~~~~ii~~L~~~~-i~~~~~~---~~~~~~~v~~~~~~~i~l 875 (947)
T Consensus 728 ~~ii~~iR~~r~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~l 806 (877)
T COG0525 728 KEIISAIRNLRAEMNLSPSAPLKVVLVGS-EELEDRLEANEDDIKGLANLEELEILSPDPEEPPVEVTAVVGGAELFLPL 806 (877)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEECC-HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCCEEEEEC
T ss_conf 99999999999975999888506999431-76799999889999984375456521567542203577651363689854
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 44549999999889999999999999986607923678588899999999999999999999999999861
Q gi|254780933|r 876 GDFVDFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIRM 946 (947)
Q Consensus 876 ~~~iD~~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l~~ 946 (947)
T Consensus 807 ~~~id~~~e~~rl~k~~~k~~~e~~~~~~kl~ne~f~~kAp~~vv~~e~~~~~~~~~~~~~l~~~l~~l~~ 877 (877)
T COG0525 807 AGLIDLAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEERLAVLKA 877 (877)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 41343788876689999999999999988715606665599999999999888699999999999998429