HHsearch alignment for GI: 254780933 and conserved domain: COG1384

>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis].
Probab=97.39  E-value=3.4e-05  Score=56.39  Aligned_cols=99  Identities=16%  Similarity=0.155  Sum_probs=73.9

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--------HHHHHHHHHHHHHHCCCCHHH
Q ss_conf             808997284499998654378896779999987670898356778815454--------089999999976745998777
Q gi|254780933|r   37 GVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAG--------IATQITVESRLFAQSSLTRED  108 (947)
Q Consensus        37 ~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~G--------lPiE~~vek~l~~~~~~~~~~  108 (947)
T Consensus        19 ~~~~v~tGi-sPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP   97 (521)
T COG1384          19 DEYVVATGI-SPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP   97 (521)
T ss_pred             CCEEEECCC-CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf             868983476-8988732142898989999999999748865799981487510127999998689998709964348997


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEC
Q ss_conf             7989999999999999999999999980836642
Q gi|254780933|r  109 IGRDAFIEKVWEWKKESGGSILSQLKRLGASCDW  142 (947)
Q Consensus       109 ~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw  142 (947)
T Consensus        98 ~G------~~~Sya~hf~~~f~~~l~~~Gi~~E~  125 (521)
T COG1384          98 FG------CCDSYAEHFLRPFEEFLDEFGIEVEF  125 (521)
T ss_pred             CC------CCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             66------53359999999999999864986499