HHsearch alignment for GI: 254780933 and conserved domain: PRK00260
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated.
Probab=99.94 E-value=2e-24 Score=196.99 Aligned_cols=345 Identities=22% Similarity=0.268 Sum_probs=216.2
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 089972844999986543788967799999876708983567788-1545408999999997674599877779899999
Q gi|254780933|r 38 VFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPG-TDHAGIATQITVESRLFAQSSLTREDIGRDAFIE 116 (947)
Q Consensus 38 ~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G-~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~ 116 (947)
T Consensus 23 ~v~~Y~CGPTVYd~~HiG~~r~~v~~D~l~R~l~~~g~~v~~v~NiTDi-----dDKii~~-a~~~~~~~---------- 86 (460)
T PRK00260 23 KVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYRGYKVTYVRNITDI-----DDKIIKR-ANEEGESI---------- 86 (460)
T ss_pred EEEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC-----HHHHHHH-HHHHCCCH----------
T ss_conf 5889967984888732000308999999999999649934999823754-----1999999-99819699----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 99999999999999999980836642798115886799999999999998894331332022037767801486865414
Q gi|254780933|r 117 KVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKE 196 (947)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~ 196 (947)
T Consensus 87 --~~~~~~~~~~f~~d~~~L~i~~p~~~~r~t---~~i~~~i~~i~~l~~~g~aY~~~~~vyFdv~~~~-------~--- 151 (460)
T PRK00260 87 --KELTERYIAAFHEDMDALGVLRPDIEPRAT---EHIPEIIELIERLIEKGHAYEADGDVYFDVRKFP-------D--- 151 (460)
T ss_pred --HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCHHHHHHHHHHHHHCCCEEEECCEEEECCCCCC-------C---
T ss_conf --999999999999999994899985224301---4799999999999857952884787996355553-------3---
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCC
Q ss_conf 68766999965304530001245555544245688716999826740101024444441000123111542332024865
Q gi|254780933|r 197 VDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRL 276 (947)
Q Consensus 197 ~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~ 276 (947)
T Consensus 152 ---------------------------------------------------------------YG~Ls~~~~~~~~~g~r 168 (460)
T PRK00260 152 ---------------------------------------------------------------YGKLSGRNLDDLQAGAR 168 (460)
T ss_pred ---------------------------------------------------------------HHHCCCCCCHHHHCCCC
T ss_conf ---------------------------------------------------------------03005653021211565
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 73210000342122320321247785565664304653111016777521366544455543465546555310015123
Q gi|254780933|r 277 IPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCF 356 (947)
Q Consensus 277 ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 356 (947)
T Consensus 169 v~------~~~~----------K~~p~DFaLWK~~--------------------------------------------- 187 (460)
T PRK00260 169 VE------VAEE----------KRDPLDFVLWKAA--------------------------------------------- 187 (460)
T ss_pred CC------CCCC----------CCCCCCHHHCCCC---------------------------------------------
T ss_conf 67------6634----------4785532212788---------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHH
Q ss_conf 34488899888876433321022322235666553244431222121454202333432002441121443113567641
Q gi|254780933|r 357 AARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLE 436 (947)
Q Consensus 357 ~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~ 436 (947)
T Consensus 188 -----------------------------------------------------------~~ge~---------------- 192 (460)
T PRK00260 188 -----------------------------------------------------------KPGEP---------------- 192 (460)
T ss_pred -----------------------------------------------------------CCCCC----------------
T ss_conf -----------------------------------------------------------88887----------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCEEE
Q ss_conf 01112321235456310269838998876576234454203455678776555410025688883101882410022020
Q gi|254780933|r 437 NIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFS 516 (947)
Q Consensus 437 ~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtWfd 516 (947)
T Consensus 193 ---~W~----SPWG~GRPGWHIECS------------------------------------------------------- 210 (460)
T PRK00260 193 ---SWD----SPWGKGRPGWHIECS------------------------------------------------------- 210 (460)
T ss_pred ---CCC----CCCCCCCCCCCHHHH-------------------------------------------------------
T ss_conf ---776----988887987422637-------------------------------------------------------
Q ss_pred CCCCCCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCC-CCCCCHHHHHHHH
Q ss_conf 442333201011110001234555301245543210135677766530121133786852000014-4310001225543
Q gi|254780933|r 517 SALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMH-ALVRDKNGQKMSK 595 (947)
Q Consensus 517 Sg~~p~~~l~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~h-G~vld~~G~KMSK 595 (947)
T Consensus 211 --aM~~~~LG~-----------~~DIH~GG~DL~FPHHENEiAQs~a~~------~-~~~a~yW~H~g~l~-i~g~KMSK 269 (460)
T PRK00260 211 --AMSTKYLGE-----------TFDIHGGGSDLIFPHHENEIAQSEAAT------G-KPFANYWMHNGFVT-VNGEKMSK 269 (460)
T ss_pred --HHHHHHCCC-----------CCEEEECCCCCCCCCCCCHHHHHHHHH------C-CCCCCEEEEEEEEE-ECCEEEEC
T ss_conf --999987599-----------754762452677899610999998864------8-98652456510576-36717503
Q ss_pred HCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 12456530233202540344454312335567754341101110000123444333320244457767677433315556
Q gi|254780933|r 596 SKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNK 675 (947)
Q Consensus 596 S~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~~~~~~~~~~Dr 675 (947)
T Consensus 270 SlgN~iti~dll~~y~~~~lR~~lLs~hYR-~pl~fs~e~L~~a~~~l~rl~~~~~~~~~~~-----~---~~------- 333 (460)
T PRK00260 270 SLGNFFTIRDLLKKYDPEVLRFFLLSAHYR-SPLNFSEEALEEAKKALERLYNALRNLEPAV-----A---PA------- 333 (460)
T ss_pred CCCCCCCHHHHHHHHCHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-----C---CC-------
T ss_conf 578700199999870779999999854689-9667799999999999999999999755402-----5---53-------
Q ss_pred HHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHCCHHHHHH
Q ss_conf 77999999998889987-5310010245777653100136889
Q gi|254780933|r 676 WIIKRLATVINDVTVGM-ENHRFNDVSAVLYRFVWDELCDWYV 717 (947)
Q Consensus 676 wils~l~~~i~~v~~~~-e~~~f~~a~~~i~~F~~~~~~~~Yi 717 (947)
T Consensus 334 ----~~~~~~~~F~~AL~DDLNTP~Ala~Lfelvk~--iN~~l 370 (460)
T PRK00260 334 ----GGEEFEERFIEAMDDDFNTPEALAVLFELAKE--INRLL 370 (460)
T ss_pred ----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHHH
T ss_conf ----22789999999875227869999999999999--99875