HHsearch alignment for GI: 254780933 and conserved domain: PRK01611
>PRK01611 argS arginyl-tRNA synthetase; Reviewed.
Probab=99.67 E-value=1.5e-12 Score=110.19 Aligned_cols=196 Identities=23% Similarity=0.273 Sum_probs=113.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCC---CCCCCHHHHHHHHHCCCCCCHHHHHCC---------
Q ss_conf 01245543210135677766530121133786852000014---431000122554312456530233202---------
Q gi|254780933|r 542 VLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMH---ALVRDKNGQKMSKSKGNVVDPIDVIDQ--------- 609 (947)
Q Consensus 542 ~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~h---G~vld~~G~KMSKS~GNvidp~e~i~~--------- 609 (947)
T Consensus 331 I~V~g~dq~-~hf~~l~~~l~~lG----~~~-~~-~~~l~h~~~~lv~~~~~~kMStR~G~~v~L~dlldea~~~a~~~~ 403 (570)
T PRK01611 331 IYVVGADHH-GHFKRLKAALKALG----YDP-EK-LEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVERARELV 403 (570)
T ss_pred EEEECCCHH-HHHHHHHHHHHHCC----CCC-CC-CEEEEEEEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHH
T ss_conf 999457588-89999999999869----996-33-447999998754368676442467874589999999999999876
Q ss_pred -------------CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCH-H---HH----HHHHHHHHHHHCCCCCCCCCCCCC-
Q ss_conf -------------5403444543123355677543411011100-0---01----234443333202444577676774-
Q gi|254780933|r 610 -------------YGADALRFYFSIMAVQGRDINLDLERIAGYR-N---FI----TKFWNAIRFSKMKNARHSVSFVPQ- 667 (947)
Q Consensus 610 -------------yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r-~---f~----nKLwNa~rf~~~~~~~~~~~~~~~- 667 (947)
T Consensus 404 ~~~~e~~~~ia~~Vg~~Airy~~L~~~~-~~~~~Fd~d~~l~~~g~t~~YiQYa~AR~~SIlrK~---~~~~~~~~~~~~ 479 (570)
T PRK01611 404 EESEEEKEEIAKAVGIDAVRYFDLSRSR-DSDYDFDLDLALSFEGNNPPYVQYAHARICSILRKA---AEEGLAAAADLS 479 (570)
T ss_pred HCCHHHHHHHHHHHCHHHHHHHHHCCCC-CCCCEECHHHHHHHCCCCCHHHHHHHHHHHHHHHHH---HCCCCCCCCCCC
T ss_conf 3377678899976341040264440688-888222689986323898257889999999999863---123454434333
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHH---HHHHHHHHHHH
Q ss_conf 333155567799999999888998753100102457776531001368898647653056714443---21000145676
Q gi|254780933|r 668 DVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVS---ETLSCFSYVLY 744 (947)
Q Consensus 668 ~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~~~~~~~---~~~~~l~~vl~ 744 (947)
T Consensus 480 ~l~~~~E~~Li~~l~~fp~vv~~a~~~~~Ph~l~~YL~~La-~~Fn~fY~-~~-~vl~~~~~~~~~~RL~L~~a~~~vL~ 556 (570)
T PRK01611 480 LLTEEEELELIKKLAEFPEVVESAAEELEPHRIANYLYELA-GAFHSFYN-AC-PVLKEEEEEERNARLALVKATAQVLK 556 (570)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHH-CC-CCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 46998999999999887999999999688189999999999-99999985-19-83589998999999999999999999
Q ss_pred HHCCCCC
Q ss_conf 4034567
Q gi|254780933|r 745 NVCKLLH 751 (947)
Q Consensus 745 ~~l~ll~ 751 (947)
T Consensus 557 ~gL~LLG 563 (570)
T PRK01611 557 NGLDLLG 563 (570)
T ss_pred HHHHCCC
T ss_conf 9864039