HHsearch alignment for GI: 254780933 and conserved domain: PRK05347
>PRK05347 glutaminyl-tRNA synthetase; Provisional.
Probab=97.63 E-value=0.00027 Score=49.83 Aligned_cols=95 Identities=27% Similarity=0.360 Sum_probs=59.9
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHH
Q ss_conf 08997284499998654378896779999987670898356778815454089999999976745998777798999999
Q gi|254780933|r 38 VFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEK 117 (947)
Q Consensus 38 ~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~ 117 (947)
T Consensus 29 kVvtRF-pPePnG~LHiGHaka~~lN~~~a~~y--~G~~~LR---fDDTN-P~------------~---e---------- 76 (556)
T PRK05347 29 KVHTRF-PPEPNGYLHIGHAKSICLNFGLAQDY--GGKCNLR---FDDTN-PE------------K---E---------- 76 (556)
T ss_pred EEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEE---ECCCC-CC------------C---C----------
T ss_conf 399804-98999876188889998669999970--9989998---35899-87------------4---5----------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCEEECCC-CEECCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 999999999999999998083664279-8115886799999999999998894331
Q gi|254780933|r 118 VWEWKKESGGSILSQLKRLGASCDWSR-ERFTMDEGMSNAVRNAFVVLYKDGLIYR 172 (947)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~lG~~~Dw~r-~y~T~d~~y~~~v~~~F~~L~~~gliy~ 172 (947)
T Consensus 77 ----~~e~~~~I~~d~~wLg~~--~~~~i~~~Sd--~f~~~y~~a~~LI~~g~AYv 124 (556)
T PRK05347 77 ----DQEYVDSIKEDVRWLGFD--WGGELRYASD--YFDQLYEYAVELIKKGKAYV 124 (556)
T ss_pred ----CHHHHHHHHHHHHHCCCC--CCCEEEEEHH--HHHHHHHHHHHHHHCCCCEE
T ss_conf ----489999999999874998--8982788134--29999999999986488135