HHsearch alignment for GI: 254780933 and conserved domain: PRK11893
>PRK11893 methionyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=0 Score=718.22 Aligned_cols=467 Identities=24% Similarity=0.380 Sum_probs=390.3
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 80899728449999865437889677999998767089835677881545408999999997674599877779899999
Q gi|254780933|r 37 GVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIE 116 (947)
Q Consensus 37 ~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~ 116 (947)
T Consensus 1 k~~~it~p~Py~nG~lHlGHa~~~~~~Dv~~Ry~R~~G~~v~~~~GtD~hg~~i~~~A~~~-----g~~p---------- 65 (512)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIERKAEEA-----GISP---------- 65 (512)
T ss_pred CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC-----CCCH----------
T ss_conf 9789968999889973446358799999999999955997074687177519999999985-----9999----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 99999999999999999980836642798115886799999999999998894331332022037767801486865414
Q gi|254780933|r 117 KVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKE 196 (947)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~ 196 (947)
T Consensus 66 --~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~c~~~~~~~~~---- 137 (512)
T PRK11893 66 --QELADRNSASFKRLWEALNISYD--DFIRTTDERHKEAVQEIFQRLLANGDIYLGKYSGWYCVRCEEFKTESEA---- 137 (512)
T ss_pred --HHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHH----
T ss_conf --99999999999999998099888--7877998799999999999997679774324443226886444577772----
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCC
Q ss_conf 68766999965304530001245555544245688716999826740101024444441000123111542332024865
Q gi|254780933|r 197 VDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRL 276 (947)
Q Consensus 197 ~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~ 276 (947)
T Consensus 138 -------------------------------------------------------------------~~~---------~ 141 (512)
T PRK11893 138 -------------------------------------------------------------------RLG---------E 141 (512)
T ss_pred -------------------------------------------------------------------CCC---------C
T ss_conf -------------------------------------------------------------------366---------5
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 73210000342122320321247785565664304653111016777521366544455543465546555310015123
Q gi|254780933|r 277 IPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCF 356 (947)
Q Consensus 277 ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 356 (947)
T Consensus 142 -------------------------------------------------------------------------------- 141 (512)
T PRK11893 142 -------------------------------------------------------------------------------- 141 (512)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHH
Q ss_conf 34488899888876433321022322235666553244431222121454202333432002441121443113567641
Q gi|254780933|r 357 AARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLE 436 (947)
Q Consensus 357 ~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~ 436 (947)
T Consensus 142 -----------------------~~~~~~~~~g~~~e~~~~~~~flkl~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~ 198 (512)
T PRK11893 142 -----------------------DGCPRCPIHGKPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPESRRNEVINFVK 198 (512)
T ss_pred -----------------------CCCCCCCCCCCCCEEEECCCCEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf -----------------------788655557997768724761120505467799997249865186999999999985
Q ss_pred C-CCCCCCCCCC-CCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCE
Q ss_conf 0-1112321235-4563102698389988765762344542034556787765554100256888831018824100220
Q gi|254780933|r 437 N-IQPWCISRQI-WWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTW 514 (947)
Q Consensus 437 ~-~~DW~ISRqr-~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtW 514 (947)
T Consensus 199 ~~l~d~~ISR~~~~WGi~vP~----~----------------------------------------------~~~~~yvW 228 (512)
T PRK11893 199 SGLKDLSISRTNFDWGIPVPG----D----------------------------------------------PKHVIYVW 228 (512)
T ss_pred CCCCCCCEECCCCCCCCCCCC----C----------------------------------------------CCCCEEEH
T ss_conf 778766152567878998888----8----------------------------------------------88620112
Q ss_pred EECCCCCCCEECHH--HHHHCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCH
Q ss_conf 20442333201011--110001234555301245543210----135677766530121133786852000014431000
Q gi|254780933|r 515 FSSALWPFASLGWP--EQTAELKTYYPTSVLVTGFDILFF----WVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDK 588 (947)
Q Consensus 515 fdSg~~p~~~l~~p--~~~~e~~~~~P~d~~~~G~Di~r~----W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~ 588 (947)
T Consensus 229 fda~~~y~s~~~~~~~~~~~~~~~~w~~~vh~~G~Dii~fH~~~~~a~l~~~~~----------~~p-~~~~~hg~l~~- 296 (512)
T PRK11893 229 FDALLNYLTALGYDEPDLEELFRKYWPADVHLIGKDILRFHAVYWPAFLMAAGL----------PLP-KRVFAHGFLTN- 296 (512)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCC----------CCC-CCCCCCEEEEE-
T ss_conf 531355677645887656478984487504323665120138889999986699----------988-63431114887-
Q ss_pred HHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH--HHHHHHHH-HHHHHCCCCCCCCCCC
Q ss_conf 12255431245653023320254034445431233556775434110111000--01234443-3332024445776767
Q gi|254780933|r 589 NGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRN--FITKFWNA-IRFSKMKNARHSVSFV 665 (947)
Q Consensus 589 ~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r~--f~nKLwNa-~rf~~~~~~~~~~~~~ 665 (947)
T Consensus 297 ~G~KmSKS~Gn~I~~~d~l~~yg~D~lR~~L~~~~p~~~D~~Fs~~~f~~~~N~~l~~~~gNl~~R~~~~~~~~~~~~~p 376 (512)
T PRK11893 297 DGQKMSKSLGNVIDPFDLVDKFGVDAVRYFLLREIPFGQDGDFSEEAFINRINADLANDLGNLLSRTLSMIAKYFDGKVP 376 (512)
T ss_pred CCCEECCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 57150134787589999999859504028776328877787878999998975899999999999999999875178788
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 743331555677999999998889987531001024577765310013688986476-5305671444321000145676
Q gi|254780933|r 666 PQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKS-ILNQKDSELVSETLSCFSYVLY 744 (947)
Q Consensus 666 ~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~-~l~~~~~~~~~~~~~~l~~vl~ 744 (947)
T Consensus 377 ~~~~~~~~d~~~~~~~~~~~~~v~~~~e~~~~~~a~~~i~~~~~~--~N~y~~~~~PW~l~k~d~~~~~~il~~~~~~~~ 454 (512)
T PRK11893 377 EPGEFSEADAALLEKADAALEQVREAMDNFAFHKALEAILELAAE--ANKYIDEQAPWSLAKTDPERLATVLYTLLESLR 454 (512)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 866588768999999999999999999712599999999999999--999988478753315899999999999999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 4034567744899999997435666
Q gi|254780933|r 745 NVCKLLHPIIPFVTEDLYSHVSPQD 769 (947)
Q Consensus 745 ~~l~ll~P~~PfitEeiw~~l~~~~ 769 (947)
T Consensus 455 ~l~ill~P~~P~~ae~l~~~Lg~~~ 479 (512)
T PRK11893 455 IIAVLLQPVMPELSAKILDQLGLEE 479 (512)
T ss_pred HHHHHHHCCCCHHHHHHHHHCCCCC
T ss_conf 9999985843599999999849998