HHsearch alignment for GI: 254780933 and conserved domain: PRK12267
>PRK12267 methionyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=0 Score=665.72 Aligned_cols=463 Identities=24% Similarity=0.375 Sum_probs=382.8
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHH
Q ss_conf 98089972844999986543788967799999876708983567788154540899999999767459987777989999
Q gi|254780933|r 36 SGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFI 115 (947)
Q Consensus 36 ~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~ 115 (947)
T Consensus 3 ~k~~~iTt~ipY~Ng~~HiGHa~~~i~aDv~aRy~R~~G~~v~f~~GtDehG~kI~~~A~~~-----g~tP--------- 68 (644)
T PRK12267 3 KKTFYITTPIYYPSGKLHIGHAYTTIAADVLARYKRLQGYDVFFLTGTDEHGQKIQQKAEEA-----GITP--------- 68 (644)
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHC-----CCCH---------
T ss_conf 99989968998889985545348789999999999846997598487687529999999985-----9999---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCC
Q ss_conf 99999999999999999998083664279811588679999999999999889433133202203776780148686541
Q gi|254780933|r 116 EKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQK 195 (947)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~ 195 (947)
T Consensus 69 ---~e~~d~~~~~~~~~~~~l~Is~D--~f~rTt~~~h~~~vq~if~~L~~kG~Iy~~~~~~~Yc~~ce~f~~~~~l~d- 142 (644)
T PRK12267 69 ---QEYVDEISAGFKDLWDKLDISYD--KFIRTTDERHKKVVQKVFEKLYDQGDIYLGEYEGWYCVSCETFFTESQLVD- 142 (644)
T ss_pred ---HHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHCCC-
T ss_conf ---99999999999999998699678--785489889999999999999988997866551232587543336244045-
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCC
Q ss_conf 46876699996530453000124555554424568871699982674010102444444100012311154233202486
Q gi|254780933|r 196 EVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGR 275 (947)
Q Consensus 196 ~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~ 275 (947)
T Consensus 143 -------------------------------------------------------------------------------- 142 (644)
T PRK12267 143 -------------------------------------------------------------------------------- 142 (644)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 57321000034212232032124778556566430465311101677752136654445554346554655531001512
Q gi|254780933|r 276 LIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDC 355 (947)
Q Consensus 276 ~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 355 (947)
T Consensus 143 -------------~------------------------------------------------------------------ 143 (644)
T PRK12267 143 -------------G------------------------------------------------------------------ 143 (644)
T ss_pred -------------C------------------------------------------------------------------
T ss_conf -------------7------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHH-HH
Q ss_conf 33448889988887643332102232223566655324443122212145420233343200244112144311356-76
Q gi|254780933|r 356 FAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYY-EW 434 (947)
Q Consensus 356 ~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~-~w 434 (947)
T Consensus 144 ---------------------------g~cp~cg~~~e~~~ee~yffkL~~~~~~L~~~~~~~p~~i~p~~~~ne~~~~~ 196 (644)
T PRK12267 144 ---------------------------GKCPDSGHEVELVKEESYFFRMSKYADRLLEFYEENPDFIQPESRKNEMLNNF 196 (644)
T ss_pred ---------------------------CCCCCCCCCCEEECCCCEEEEHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHH
T ss_conf ---------------------------86877899764640565144346678999999960997467625887999999
Q ss_pred HH-CCCCCCCCCCC-CCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEC
Q ss_conf 41-01112321235-45631026983899887657623445420345567877655541002568888310188241002
Q gi|254780933|r 435 LE-NIQPWCISRQI-WWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLD 512 (947)
Q Consensus 435 l~-~~~DW~ISRqr-~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlD 512 (947)
T Consensus 197 l~~gL~D~~ISR~~~~WGipvP~----d----------------------------------------------~~~v~Y 226 (644)
T PRK12267 197 IKPGLEDLAVSRTSFDWGIPVPS----D----------------------------------------------PKHVVY 226 (644)
T ss_pred HHCCCCCCCEECCCCCCCCCCCC----C----------------------------------------------CCEEEE
T ss_conf 85778554302477888885789----8----------------------------------------------760799
Q ss_pred CEEECCCCCCCEECHHHHH-HCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 2020442333201011110-001234555301245543210----13567776653012113378685200001443100
Q gi|254780933|r 513 TWFSSALWPFASLGWPEQT-AELKTYYPTSVLVTGFDILFF----WVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRD 587 (947)
Q Consensus 513 tWfdSg~~p~~~l~~p~~~-~e~~~~~P~d~~~~G~Di~r~----W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld 587 (947)
T Consensus 227 VWfDA~i~Yisa~g~~~~~~~~~~~~Wp~~~h~iGkDii~FH~i~wpamL~~~-----------~~~~p~~v~~hg~~~- 294 (644)
T PRK12267 227 VWIDALLNYITALGYGSDDDELFMKFWPADVHLVGKDILRFHAIYWPIMLMAL-----------DLPLPKHLFAHGWWL- 294 (644)
T ss_pred EEECCCCCHHHHHCCCCCCCHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHC-----------CCCCCCEEECCCEEE-
T ss_conf 84224300343413862122667763731330268553236688999999976-----------999864451044187-
Q ss_pred HHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC--CHHHHHHHHH-HHHHHHCCCCCCCCCC
Q ss_conf 012255431245653023320254034445431233556775434110111--0000123444-3333202444577676
Q gi|254780933|r 588 KNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAG--YRNFITKFWN-AIRFSKMKNARHSVSF 664 (947)
Q Consensus 588 ~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~--~r~f~nKLwN-a~rf~~~~~~~~~~~~ 664 (947)
T Consensus 295 ~~g~KmSKS~Gn~i~~~~~~~~~g~D~lRyyl~~~~~~~~D~dfs~~~f~~r~NsdL~n~lGNl~~R~~~~~~k~~~g~v 374 (644)
T PRK12267 295 MKDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEAFVERINSDLANDLGNLLNRTVAMINKYFDGEI 374 (644)
T ss_pred CCCCEECCCCCCEECHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 17860055368422379998755940436464444887877778999999998899887777899999999887518867
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHH
Q ss_conf 7743331555677999999998889987531001024577765310013688986476530567---1444321000145
Q gi|254780933|r 665 VPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKD---SELVSETLSCFSY 741 (947)
Q Consensus 665 ~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~~---~~~~~~~~~~l~~ 741 (947)
T Consensus 375 p~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~Al~~i~~l~--~~~N~Yi~~~~PW~L~K~~~~~~~~~~vl~~~l~ 452 (644)
T PRK12267 375 PAYKGVTEFDEELLALAKETLKKYEEAMEALQFSRALEELWKLI--SRANKYIDETAPWVLAKDEGKKERLGAVMAHLAE 452 (644)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 88877874569999999999999999997126999999999999--9999988857887663686629999999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 676403456774489999999743566
Q gi|254780933|r 742 VLYNVCKLLHPIIPFVTEDLYSHVSPQ 768 (947)
Q Consensus 742 vl~~~l~ll~P~~PfitEeiw~~l~~~ 768 (947)
T Consensus 453 ~~r~l~ilL~P~mP~~a~ki~~~Lgl~ 479 (644)
T PRK12267 453 SLRKVAVLLSPFMPETSKKIAEQLGLE 479 (644)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHCCCC
T ss_conf 999999970683657999999981999