HHsearch alignment for GI: 254780933 and conserved domain: cd00672
>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.49 E-value=2.8e-13 Score=115.53 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=56.6
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 80899728449999865437889677999998767089835677881545408999999997674599877779899999
Q gi|254780933|r 37 GVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIE 116 (947)
Q Consensus 37 ~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~ 116 (947)
T Consensus 19 ~~V~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~gy~V~~V~NITDIDDKII~~A-----~~~~~~----------- 82 (213)
T cd00672 19 GLVRMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRA-----REEGLS----------- 82 (213)
T ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH-----HHCCCC-----------
T ss_conf 9788997899688998765342576899999999963993589997267518999999-----983999-----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCE
Q ss_conf 99999999999999999980836
Q gi|254780933|r 117 KVWEWKKESGGSILSQLKRLGAS 139 (947)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~lG~~ 139 (947)
T Consensus 83 -~~ela~~y~~~f~~d~~~Lni~ 104 (213)
T cd00672 83 -IKEVAEYYTAEFFEDMKALNVL 104 (213)
T ss_pred -HHHHHHHHHHHHHHHHHHHCCC
T ss_conf -9999999999999999982899