HHsearch alignment for GI: 254780933 and conserved domain: cd00805
>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.87 E-value=0.00021 Score=50.56 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=34.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 5530124554321013567776653012113378685200001443100012255431245653
Q gi|254780933|r 539 PTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVD 602 (947)
Q Consensus 539 P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvid 602 (947)
T Consensus 150 ~~~~vpvG~DQ~~h-----iel~Rdia~r~n--~~~~--~~l~~pll~g~dG~KMSKS~~N~i~ 204 (268)
T cd00805 150 DVDIQLGGSDQRGN-----ITLGRDLIRRLG--YKKV--VGLTTPLLTGLDGGKMSKSEGNAIW 204 (268)
T ss_pred CCCCEECCHHHHHH-----HHHHHHHHHHHC--CCCC--EEEEECEEECCCCCCCCCCCCCCCC
T ss_conf 37714606008999-----999999999828--9761--4553110008998744678999501