HHsearch alignment for GI: 254780933 and conserved domain: cd00806
>cd00806 TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer, which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=94.99 E-value=0.012 Score=37.80 Aligned_cols=12 Identities=50% Similarity=0.498 Sum_probs=9.9
Q ss_pred HHHHHHCCCC-CC
Q ss_conf 2554312456-53
Q gi|254780933|r 591 QKMSKSKGNV-VD 602 (947)
Q Consensus 591 ~KMSKS~GNv-id 602 (947)
T Consensus 191 ~KMSKS~~ns~I~ 203 (282)
T cd00806 191 KKMSKSDPNTIIF 203 (282)
T ss_pred CCCCCCCCCCCEE
T ss_conf 7555689997445