HHsearch alignment for GI: 254780933 and conserved domain: cd00807
>cd00807 Gln_GluRS_non_core Glutaminyl-tRNA synthetase (GlnRS) and non-descriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Gln or Glu, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.82 E-value=0.00011 Score=52.72 Aligned_cols=86 Identities=28% Similarity=0.278 Sum_probs=61.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHH
Q ss_conf 44999986543788967799999876708983567788154540899999999767459987777989999999999999
Q gi|254780933|r 45 PPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKE 124 (947)
Q Consensus 45 pP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~ 124 (947)
T Consensus 7 APsPtG~lHiG~artal~n~l~Ar~--~~G~~iLRiEDTD~~-----------------r----------------~~~e 51 (238)
T cd00807 7 PPEPNGYLHIGHAKAAILNFEYAKR--YGGKLILRFDDTNPK-----------------K----------------EDEE 51 (238)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCCCC-----------------C----------------CCCH
T ss_conf 8898986438999999999999998--299699986778987-----------------6----------------7616
Q ss_pred HHHHHHHHHHHHCCEEECCCCEECCCH--HHHHHHHHHHHHHHHCCCEE
Q ss_conf 999999999980836642798115886--79999999999999889433
Q gi|254780933|r 125 SGGSILSQLKRLGASCDWSRERFTMDE--GMSNAVRNAFVVLYKDGLIY 171 (947)
Q Consensus 125 ~~~~~~~~~~~lG~~~Dw~r~y~T~d~--~y~~~v~~~F~~L~~~gliy 171 (947)
T Consensus 52 ~~~~I~~~L~wLGl--~~De~~~QS~r~~~y~~----~a~~Li~~G~AY 94 (238)
T cd00807 52 AYDSILEDLEWLGI--KPDEITYASDYFDLYYE----YAEKLIKMGKAY 94 (238)
T ss_pred HHHHHHHHHHHHCC--CCCCCEECCCCHHHHHH----HHHHHHHCCCCC
T ss_conf 89999999998489--99931563667999999----999999879987