HHsearch alignment for GI: 254780933 and conserved domain: cd07375
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.90 E-value=6.6e-24 Score=193.19 Aligned_cols=117 Identities=20% Similarity=0.365 Sum_probs=103.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCH
Q ss_conf 11011100001234443333202444577676774333155567799999999888998753100102457776531001
Q gi|254780933|r 633 LERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDEL 712 (947)
Q Consensus 633 ~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~ 712 (947)
T Consensus 1 eerve~~r~F~nKLWNa~rF~~~~~~~~~~~~-~~~~l~~~DrWIls~l~~~i~~v~~~~e~y~f~~a~~~l~~F~w~~- 78 (117)
T cd07375 1 EERLKQARAFLNRLYRLLSFFRKALGGTQPKW-DNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNEL- 78 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_conf 99999999999899999999985688788865-6322776279999999899999999999278999999999999936-
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 368898647653056714443210001456764034567744
Q gi|254780933|r 713 CDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPII 754 (947)
Q Consensus 713 ~~~Yie~~K~~l~~~~~~~~~~~~~~l~~vl~~~l~ll~P~~ 754 (947)
T Consensus 79 -dwYie~~K~r~~~e~--~~~~~~~~L~~vl~~~lkLlhPFt 117 (117)
T cd07375 79 -NWYLDELKPALQTEE--LREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred -HHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf -999999656304827--579999999999999999819999