HHsearch alignment for GI: 254780933 and conserved domain: cd07957
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.35 E-value=2.4e-12 Score=108.72 Aligned_cols=95 Identities=16% Similarity=0.262 Sum_probs=80.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHH-HHCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 3315556779999999988899875310010245777653100136889864765-3056-7144432100014567640
Q gi|254780933|r 669 VKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSI-LNQK-DSELVSETLSCFSYVLYNV 746 (947)
Q Consensus 669 ~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~-l~~~-~~~~~~~~~~~l~~vl~~~ 746 (947)
T Consensus 33 ~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~N~y~~~~~PW~l~K~~~~~~~~~vl~~~l~~~~~l 110 (129)
T cd07957 33 GLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELA--RAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRIL 110 (129)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 7764139999999999999999998524999999999999--99999999658798882302999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHC
Q ss_conf 3456774489999999743
Q gi|254780933|r 747 CKLLHPIIPFVTEDLYSHV 765 (947)
Q Consensus 747 l~ll~P~~PfitEeiw~~l 765 (947)
T Consensus 111 ~ilL~P~mP~~s~~i~~~L 129 (129)
T cd07957 111 AILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHHHHHHCCHHHHHHHHHC
T ss_conf 9999757018999999719