HHsearch alignment for GI: 254780933 and conserved domain: cd07959
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.71 E-value=1.4e-17 Score=147.04 Aligned_cols=89 Identities=20% Similarity=0.379 Sum_probs=76.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 74333155567799999999888998753100102457776531001368898647653056714443210001456764
Q gi|254780933|r 666 PQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYN 745 (947)
Q Consensus 666 ~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~~~~~~~~~~~~l~~vl~~ 745 (947)
T Consensus 29 ~~~~~~~~Dkw~ls~l~~~i~~~~~a~e~~~fr~a~~~~~~~l~~~~-~~Y~~~~~~~----------~~~~~l~~~l~~ 97 (117)
T cd07959 29 ELEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDL-DWYRERGGAG----------MNKDLLRRFIEV 97 (117)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCC----------CHHHHHHHHHHH
T ss_conf 78889776899999999999999999998788789999999999999-9999984554----------149999999999
Q ss_pred HCCCCCCCHHHHHHHHHHHC
Q ss_conf 03456774489999999743
Q gi|254780933|r 746 VCKLLHPIIPFVTEDLYSHV 765 (947)
Q Consensus 746 ~l~ll~P~~PfitEeiw~~l 765 (947)
T Consensus 98 ~~~lLaP~~PhiaEEiW~~l 117 (117)
T cd07959 98 WTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHC
T ss_conf 99998473348699998639