HHsearch alignment for GI: 254780933 and conserved domain: cd07961

>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=100.00  E-value=1.6e-37  Score=292.73  Aligned_cols=175  Identities=22%  Similarity=0.408  Sum_probs=151.3

Q ss_pred             CCCCCC-CCCHHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             341101-110000123444333320244457----767677433315556779999999988899875310010245777
Q gi|254780933|r  631 LDLERI-AGYRNFITKFWNAIRFSKMKNARH----SVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLY  705 (947)
Q Consensus       631 fs~~~i-~~~r~f~nKLwNa~rf~~~~~~~~----~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~  705 (947)
T Consensus         1 F~e~~v~e~~R~f~nklwNa~RF~~~~~~~~~~~~~~~~~~~~~~~~~D~WIls~l~~~~~~v~~~~~~y~f~~a~~~l~   80 (183)
T cd07961           1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL   80 (183)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             98889999983589999989999996221017995434556010558899999999999999999998011999999999


Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCC
Q ss_conf             65310013688986476530567-14443210001456764034567744899999997435666767565366357878
Q gi|254780933|r  706 RFVWDELCDWYVEFIKSILNQKD-SELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPS  784 (947)
Q Consensus       706 ~F~~~~~~~~Yie~~K~~l~~~~-~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~  784 (947)
T Consensus        81 ~F~-~~l~~wYie~~K~rl~~~~~~~~~~~a~~~L~~vL~~~l~ll~P~~PFitEeiwq~l~~~~~-~~~eSVhl~~~P~  158 (183)
T cd07961          81 EFI-DELTNWYIRRNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELG-DAPESVHLLDWPE  158 (183)
T ss_pred             HHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC-CCCCCEECCCCCC
T ss_conf             999-99989999998899970566388899999999999999997576402439999998602468-9888032006899


Q ss_pred             CC--CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             77--477898999999999999999
Q gi|254780933|r  785 LI--IDDSESIEEVNWIIDLISKVR  807 (947)
Q Consensus       785 ~~--~~d~~~~~~~~~~~~ii~~iR  807 (947)
T Consensus       159 ~~~~~~d~~le~~~~~l~~ii~~iR  183 (183)
T cd07961         159 VDESLIDEELEEAMELVREIVELGR  183 (183)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             8810269999999999999999759