Query gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 947
No_of_seqs 255 out of 5531
Neff 7.5
Searched_HMMs 39220
Date Mon May 30 04:11:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780933.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00422 valS valyl-tRNA synt 100.0 0 0 2109.7 56.7 891 3-928 1-970 (970)
2 PRK05729 valS valyl-tRNA synth 100.0 0 0 2009.0 70.6 870 1-946 1-877 (877)
3 COG0525 ValS Valyl-tRNA synthe 100.0 0 0 1965.1 63.3 870 3-946 1-877 (877)
4 PRK06039 ileS isoleucyl-tRNA s 100.0 0 0 1802.9 60.0 842 3-905 1-901 (1042)
5 PRK13208 valS valyl-tRNA synth 100.0 0 0 1711.8 57.7 793 2-859 4-801 (809)
6 TIGR00392 ileS isoleucyl-tRNA 100.0 0 0 1722.2 36.6 808 2-832 1-933 (938)
7 PRK05743 ileS isoleucyl-tRNA s 100.0 0 0 1656.9 54.4 791 4-854 16-859 (910)
8 KOG0432 consensus 100.0 0 0 1648.9 59.9 899 2-947 41-994 (995)
9 PRK13804 ileS isoleucyl-tRNA s 100.0 0 0 1631.4 53.2 792 3-838 20-886 (966)
10 COG0060 IleS Isoleucyl-tRNA sy 100.0 0 0 1638.1 45.1 736 3-787 14-797 (933)
11 pfam00133 tRNA-synt_1 tRNA syn 100.0 0 0 1341.2 31.4 570 15-632 1-606 (606)
12 KOG0434 consensus 100.0 0 0 1317.1 42.2 840 2-904 3-919 (1070)
13 PRK12300 leuS leucyl-tRNA synt 100.0 0 0 1297.1 50.6 771 52-928 1-854 (888)
14 PRK00390 leuS leucyl-tRNA synt 100.0 0 0 1288.4 43.1 720 3-867 1-822 (822)
15 TIGR00396 leuS_bact leucyl-tRN 100.0 0 0 1203.2 28.5 751 7-867 1-916 (916)
16 KOG0433 consensus 100.0 0 0 1148.1 45.8 722 7-786 30-811 (937)
17 TIGR00395 leuS_arch leucyl-tRN 100.0 0 0 1142.1 33.8 801 10-850 1-995 (1109)
18 COG0495 LeuS Leucyl-tRNA synth 100.0 0 0 1063.9 36.0 734 3-865 1-813 (814)
19 KOG0435 consensus 100.0 0 0 903.6 27.5 655 8-787 31-796 (876)
20 KOG0437 consensus 100.0 0 0 803.1 25.9 752 8-810 13-908 (1080)
21 cd00817 ValRS_core This is the 100.0 0 0 743.8 23.9 363 37-631 1-363 (363)
22 PRK12268 methionyl-tRNA synthe 100.0 0 0 733.7 26.2 491 37-767 3-511 (558)
23 PRK11893 methionyl-tRNA synthe 100.0 0 0 718.2 25.9 467 37-769 1-479 (512)
24 cd00818 IleRS_core This is the 100.0 0 0 680.8 22.2 338 37-631 1-339 (339)
25 PRK12267 methionyl-tRNA synthe 100.0 0 0 665.7 26.1 463 36-768 3-479 (644)
26 PRK00133 metG methionyl-tRNA s 100.0 0 0 651.2 23.4 482 37-768 2-504 (666)
27 pfam09334 tRNA-synt_1g tRNA sy 100.0 0 0 616.4 18.6 373 39-652 1-387 (388)
28 cd00668 Ile_Leu_Val_MetRS_core 100.0 0 0 589.3 20.2 330 38-631 1-334 (334)
29 COG0143 MetG Methionyl-tRNA sy 100.0 0 0 568.4 25.8 490 36-768 4-513 (558)
30 TIGR00398 metG methionyl-tRNA 100.0 0 0 559.5 22.0 494 40-768 2-541 (573)
31 cd00812 LeuRS_core This is the 100.0 0 0 542.3 22.1 359 38-631 1-376 (376)
32 KOG0436 consensus 100.0 0 0 430.1 22.3 473 33-769 35-529 (578)
33 cd00814 MetRS_core This is the 100.0 0 0 385.6 17.6 309 38-631 1-319 (319)
34 cd07961 Anticodon_Ia_Ile_ABEc 100.0 1.6E-37 4E-42 292.7 13.0 175 631-807 1-183 (183)
35 cd07960 Anticodon_Ia_Ile_BEm A 100.0 2.5E-34 6.4E-39 269.3 13.3 172 632-806 2-179 (180)
36 pfam01406 tRNA-synt_1e tRNA sy 100.0 7.5E-34 1.9E-38 265.8 15.5 119 35-175 8-126 (301)
37 KOG1247 consensus 100.0 4.4E-33 1.1E-37 260.2 15.8 493 38-767 15-520 (567)
38 cd07962 Anticodon_Ia_Val Antic 100.0 1.7E-31 4.4E-36 248.6 8.3 135 631-765 1-135 (135)
39 pfam08264 Anticodon_1 Anticodo 100.0 3.2E-29 8.1E-34 232.0 12.4 145 674-824 1-147 (148)
40 PRK00260 cysS cysteinyl-tRNA s 99.9 2E-24 5.1E-29 197.0 19.9 345 38-717 23-370 (460)
41 cd07375 Anticodon_Ia_like Anti 99.9 6.6E-24 1.7E-28 193.2 7.4 117 633-754 1-117 (117)
42 COG0215 CysS Cysteinyl-tRNA sy 99.9 2.6E-20 6.6E-25 166.9 14.4 146 540-709 222-369 (464)
43 TIGR03447 mycothiol_MshC cyste 99.8 5E-19 1.3E-23 157.5 16.8 141 539-710 241-384 (411)
44 PRK12418 cysteinyl-tRNA synthe 99.8 7.6E-19 1.9E-23 156.2 17.6 141 539-709 214-356 (384)
45 cd07958 Anticodon_Ia_Leu_BEm A 99.8 2.9E-19 7.3E-24 159.3 5.8 117 631-765 1-117 (117)
46 KOG2007 consensus 99.7 3.9E-16 9.8E-21 136.4 18.2 168 540-721 259-428 (586)
47 cd07959 Anticodon_Ia_Leu_AEc A 99.7 1.4E-17 3.4E-22 147.0 6.4 89 666-765 29-117 (117)
48 COG0018 ArgS Arginyl-tRNA synt 99.7 4.5E-14 1.1E-18 121.3 24.1 165 581-750 372-569 (577)
49 cd00802 class_I_aaRS_core Clas 99.7 5.7E-17 1.4E-21 142.5 5.4 72 41-134 2-73 (142)
50 PRK01611 argS arginyl-tRNA syn 99.7 1.5E-12 3.8E-17 110.2 27.4 196 542-751 331-563 (570)
51 PRK12451 arginyl-tRNA syntheta 99.7 6.2E-13 1.6E-17 113.0 24.8 167 542-721 328-525 (562)
52 TIGR00435 cysS cysteinyl-tRNA 99.5 1.6E-14 4.1E-19 124.6 6.1 163 539-710 366-535 (660)
53 cd00672 CysRS_core This is the 99.5 2.8E-13 7E-18 115.5 10.2 86 37-139 19-104 (213)
54 TIGR00456 argS arginyl-tRNA sy 99.5 6.3E-12 1.6E-16 105.6 16.6 198 542-750 353-592 (600)
55 pfam10458 Val_tRNA-synt_C Valy 99.4 2.3E-12 5.8E-17 108.8 9.3 65 880-944 1-65 (66)
56 cd07957 Anticodon_Ia_Met Antic 99.4 2.4E-12 6E-17 108.7 7.3 95 669-765 33-129 (129)
57 cd00674 LysRS_core_class_I Thi 99.3 4.1E-11 1E-15 99.6 10.6 98 35-141 17-122 (354)
58 PRK00750 lysK lysyl-tRNA synth 99.3 1.8E-10 4.7E-15 94.9 13.1 101 35-142 27-136 (513)
59 pfam01921 tRNA-synt_1f tRNA sy 99.2 1.1E-10 2.7E-15 96.6 10.1 101 35-142 17-125 (355)
60 pfam00750 tRNA-synt_1d tRNA sy 98.9 3.2E-08 8.1E-13 78.5 10.5 58 35-92 17-74 (345)
61 cd00671 ArgRS_core This is the 98.5 2.9E-06 7.5E-11 64.2 10.6 55 39-93 2-56 (267)
62 PRK00574 gltX glutamyl-tRNA sy 98.2 2.6E-05 6.7E-10 57.2 10.9 88 46-172 11-107 (489)
63 PRK12558 glutamyl-tRNA synthet 98.2 3.2E-05 8.2E-10 56.6 10.8 88 46-172 9-96 (461)
64 pfam00749 tRNA-synt_1c tRNA sy 98.2 3.3E-05 8.3E-10 56.5 10.9 89 45-172 7-96 (314)
65 PRK01406 gltX glutamyl-tRNA sy 98.2 4.2E-05 1.1E-09 55.7 11.0 88 46-172 9-97 (467)
66 pfam00750 tRNA-synt_1d tRNA sy 98.0 2.8E-06 7.2E-11 64.3 2.8 82 542-632 234-344 (345)
67 PRK12410 glutamyl-tRNA synthet 98.0 0.00018 4.5E-09 51.2 11.7 88 46-172 6-93 (433)
68 TIGR00396 leuS_bact leucyl-tRN 98.0 1.5E-06 3.9E-11 66.2 1.0 53 381-436 174-230 (916)
69 PRK04156 gltX glutamyl-tRNA sy 97.9 5.2E-05 1.3E-09 55.0 7.2 98 36-173 98-197 (566)
70 cd00807 Gln_GluRS_non_core Glu 97.8 0.00011 2.8E-09 52.7 7.7 86 45-171 7-94 (238)
71 PRK05710 glutamyl-Q tRNA(Asp) 97.7 0.00047 1.2E-08 48.1 9.9 88 46-171 11-98 (299)
72 PRK05347 glutaminyl-tRNA synth 97.6 0.00027 6.8E-09 49.8 7.3 95 38-172 29-124 (556)
73 COG0008 GlnS Glutamyl- and glu 97.6 0.00036 9.2E-09 48.9 7.9 89 45-172 15-104 (472)
74 COG1384 LysS Lysyl-tRNA synthe 97.4 3.4E-05 8.7E-10 56.4 0.1 99 37-142 19-125 (521)
75 cd00418 GlxRS_core Glutamyl-tR 97.3 0.0013 3.4E-08 44.7 7.9 83 45-168 7-92 (223)
76 COG1384 LysS Lysyl-tRNA synthe 97.3 0.0016 4E-08 44.2 8.0 55 583-637 268-323 (521)
77 TIGR00463 gltX_arch glutamyl-t 97.3 0.00042 1.1E-08 48.4 4.6 101 37-185 100-202 (600)
78 TIGR00464 gltX_bact glutamyl-t 97.1 0.0014 3.7E-08 44.5 5.9 89 46-172 8-104 (513)
79 PRK13354 tyrosyl-tRNA syntheta 96.9 0.00023 5.9E-09 50.3 0.3 57 540-605 186-243 (405)
80 cd00805 TyrRS_core Tyrosinyl-t 96.9 0.00021 5.4E-09 50.6 0.0 55 539-602 150-204 (268)
81 TIGR00440 glnS glutaminyl-tRNA 96.9 0.00091 2.3E-08 45.9 3.2 90 45-173 6-96 (564)
82 COG0495 LeuS Leucyl-tRNA synth 96.9 0.00056 1.4E-08 47.5 2.2 75 235-309 208-312 (814)
83 KOG4426 consensus 96.9 0.0014 3.5E-08 44.7 4.0 61 576-640 429-491 (656)
84 PRK00390 leuS leucyl-tRNA synt 96.5 0.001 2.6E-08 45.7 1.1 76 359-436 135-224 (822)
85 KOG1147 consensus 96.5 0.012 3.1E-07 37.8 6.6 50 123-176 249-298 (712)
86 PRK12284 tryptophanyl-tRNA syn 96.4 0.00067 1.7E-08 46.9 -0.1 32 585-621 195-226 (436)
87 TIGR00435 cysS cysteinyl-tRNA 96.2 0.0019 4.8E-08 43.7 1.4 46 38-83 22-68 (660)
88 cd00808 GluRS_core Descriminat 96.1 0.01 2.6E-07 38.3 4.8 62 45-143 7-68 (239)
89 PRK12283 tryptophanyl-tRNA syn 96.1 0.013 3.3E-07 37.5 5.0 32 586-622 258-289 (398)
90 PRK00927 tryptophanyl-tRNA syn 96.0 0.03 7.6E-07 34.9 6.8 42 589-635 189-234 (325)
91 KOG1149 consensus 95.9 0.077 2E-06 31.9 8.5 126 46-209 40-189 (524)
92 PRK12556 tryptophanyl-tRNA syn 95.8 0.0019 4.9E-08 43.6 -0.2 62 538-605 147-214 (328)
93 KOG1195 consensus 95.7 0.17 4.5E-06 29.3 13.7 66 13-80 88-153 (567)
94 pfam00579 tRNA-synt_1b tRNA sy 95.6 0.004 1E-07 41.3 0.9 57 540-603 150-209 (291)
95 cd00395 Tyr_Trp_RS_core Tyrosi 95.6 0.0041 1.1E-07 41.2 0.9 54 540-601 142-196 (274)
96 KOG1148 consensus 95.4 0.039 1E-06 34.0 5.5 22 291-312 258-280 (764)
97 cd07956 Anticodon_Ia_Arg Antic 95.4 0.051 1.3E-06 33.2 6.0 139 608-751 1-149 (156)
98 KOG0435 consensus 95.4 0.0025 6.4E-08 42.7 -0.8 51 383-436 199-249 (876)
99 PRK05912 tyrosyl-tRNA syntheta 95.2 0.005 1.3E-07 40.5 0.3 57 540-605 182-239 (402)
100 cd00806 TrpRS_core Tryptophany 95.0 0.012 3E-07 37.8 1.7 12 591-602 191-203 (282)
101 PRK12282 tryptophanyl-tRNA syn 94.8 0.0046 1.2E-07 40.8 -0.8 75 538-621 141-220 (333)
102 COG0162 TyrS Tyrosyl-tRNA synt 94.8 0.01 2.6E-07 38.2 0.9 52 540-600 181-232 (401)
103 PRK10636 putative ABC transpor 94.4 0.4 1E-05 26.7 8.8 55 881-935 561-615 (638)
104 PRK00574 gltX glutamyl-tRNA sy 94.3 0.23 5.9E-06 28.4 6.9 78 540-623 202-285 (489)
105 PRK08560 tyrosyl-tRNA syntheta 94.2 0.013 3.2E-07 37.6 0.2 15 591-605 219-234 (333)
106 COG0180 TrpS Tryptophanyl-tRNA 94.0 0.012 3.1E-07 37.7 -0.0 21 584-604 189-211 (314)
107 cd02156 nt_trans nt_trans (nuc 93.8 0.029 7.3E-07 35.0 1.4 71 46-143 4-74 (147)
108 TIGR00464 gltX_bact glutamyl-t 93.5 0.034 8.7E-07 34.4 1.5 54 540-602 214-275 (513)
109 PRK08560 tyrosyl-tRNA syntheta 93.1 0.42 1.1E-05 26.5 6.5 44 37-87 29-73 (333)
110 PTZ00248 eukaryotic translatio 93.0 0.26 6.6E-06 28.0 5.3 63 871-937 228-291 (324)
111 PRK11147 ABC transporter ATPas 92.8 0.73 1.9E-05 24.7 9.1 66 881-947 566-631 (632)
112 PTZ00126 tyrosyl-tRNA syntheta 92.3 0.061 1.6E-06 32.6 1.4 77 521-605 208-287 (399)
113 KOG2916 consensus 91.9 0.28 7.1E-06 27.8 4.3 52 875-930 230-281 (304)
114 PRK12558 glutamyl-tRNA synthet 91.6 0.16 4E-06 29.6 2.7 89 540-634 200-293 (461)
115 pfam00579 tRNA-synt_1b tRNA sy 91.2 0.21 5.4E-06 28.7 3.1 44 37-87 4-48 (291)
116 PRK05710 glutamyl-Q tRNA(Asp) 90.5 0.25 6.3E-06 28.2 2.9 23 578-600 223-245 (299)
117 PRK12410 glutamyl-tRNA synthet 90.1 0.36 9.2E-06 26.9 3.5 46 580-626 223-269 (433)
118 cd00418 GlxRS_core Glutamyl-tR 89.7 0.12 3.2E-06 30.4 0.9 61 578-638 139-215 (223)
119 PRK01406 gltX glutamyl-tRNA sy 88.7 0.36 9.1E-06 27.0 2.6 78 540-623 192-273 (467)
120 TIGR00467 lysS_arch lysyl-tRNA 88.0 1.7 4.3E-05 22.1 5.7 52 35-87 17-68 (539)
121 PRK11637 hypothetical protein; 87.0 2.1 5.4E-05 21.4 7.5 21 592-612 356-376 (404)
122 TIGR00255 TIGR00255 conserved 85.9 2.4 6E-05 21.0 6.0 63 875-945 214-293 (293)
123 COG3883 Uncharacterized protei 85.4 2.5 6.4E-05 20.8 7.4 21 918-938 197-217 (265)
124 KOG0994 consensus 84.2 2.8 7.2E-05 20.5 8.4 19 747-765 1502-1524(1758)
125 KOG2623 consensus 82.5 0.44 1.1E-05 26.3 0.6 61 538-605 226-286 (467)
126 PRK13729 conjugal transfer pil 81.9 3.4 8.7E-05 19.8 5.5 10 445-454 127-136 (474)
127 pfam06447 consensus 79.6 4 0.0001 19.3 7.4 12 710-721 371-382 (407)
128 PRK12285 tryptophanyl-tRNA syn 79.5 1.8 4.6E-05 21.8 2.9 53 542-600 208-261 (369)
129 PRK06798 fliD flagellar cappin 76.0 5 0.00013 18.6 6.9 60 876-947 374-433 (440)
130 pfam11559 ADIP Afadin- and alp 72.1 6.2 0.00016 17.9 7.8 64 882-945 65-128 (151)
131 PRK00578 prfB peptide chain re 71.3 6.4 0.00016 17.8 5.7 10 63-72 10-19 (367)
132 TIGR00233 trpS tryptophanyl-tR 71.0 4 0.0001 19.3 2.8 55 586-644 215-276 (366)
133 pfam07106 TBPIP Tat binding pr 69.9 6.9 0.00018 17.6 8.5 22 881-902 114-135 (169)
134 pfam02403 Seryl_tRNA_N Seryl-t 69.4 7 0.00018 17.5 6.4 67 875-945 28-94 (108)
135 KOG2911 consensus 68.0 7.5 0.00019 17.3 7.5 11 615-625 191-201 (439)
136 KOG3990 consensus 67.5 7.6 0.0002 17.3 7.7 23 441-466 59-81 (305)
137 KOG2145 consensus 67.4 3 7.6E-05 20.2 1.5 11 590-600 276-286 (397)
138 pfam03962 Mnd1 Mnd1 family. Th 66.8 7.9 0.0002 17.2 7.9 60 884-946 104-163 (188)
139 pfam09755 DUF2046 Uncharacteri 65.8 8.2 0.00021 17.0 5.1 24 881-904 225-248 (308)
140 COG1561 Uncharacterized stress 64.8 8.6 0.00022 16.9 5.1 50 888-945 241-290 (290)
141 PRK09429 mepA penicillin-insen 64.8 2.2 5.7E-05 21.2 0.5 13 443-455 59-71 (270)
142 pfam03411 Peptidase_M74 Penici 62.2 2.6 6.7E-05 20.7 0.4 13 443-455 29-41 (240)
143 TIGR02902 spore_lonB ATP-depen 62.1 3.1 8E-05 20.1 0.8 33 513-547 204-239 (532)
144 KOG2185 consensus 60.7 10 0.00026 16.4 7.1 58 878-946 415-472 (486)
145 TIGR02026 BchE magnesium-proto 60.5 4.9 0.00012 18.7 1.6 15 817-831 437-451 (506)
146 KOG0977 consensus 60.3 10 0.00026 16.3 6.3 21 533-553 477-497 (546)
147 PRK11820 hypothetical protein; 58.9 11 0.00027 16.2 3.3 48 889-944 240-287 (288)
148 cd01520 RHOD_YbbB Member of th 58.4 10 0.00026 16.4 2.9 15 376-390 84-98 (128)
149 KOG0250 consensus 58.3 11 0.00028 16.1 7.8 58 886-944 867-928 (1074)
150 PRK12765 flagellar capping pro 58.2 11 0.00028 16.1 7.5 56 882-947 533-588 (597)
151 COG3770 MepA Murein endopeptid 58.1 3.5 8.8E-05 19.8 0.5 13 443-455 68-80 (284)
152 COG3750 Uncharacterized protei 57.9 11 0.00028 16.1 6.8 62 883-944 21-82 (85)
153 pfam08340 DUF1732 Domain of un 57.2 11 0.00029 16.0 4.0 60 877-944 9-85 (86)
154 pfam11853 DUF3373 Protein of u 56.2 12 0.0003 15.9 4.0 19 134-152 60-79 (485)
155 TIGR02295 HpaD 3,4-dihydroxyph 56.2 3.7 9.4E-05 19.6 0.3 10 607-616 267-276 (312)
156 pfam04111 APG6 Autophagy prote 55.9 12 0.00031 15.8 7.0 12 592-603 301-312 (356)
157 KOG2144 consensus 54.9 3.9 9.8E-05 19.4 0.3 69 523-600 161-230 (360)
158 pfam06009 Laminin_II Laminin D 54.6 13 0.00032 15.7 6.8 28 792-819 90-117 (140)
159 pfam00509 Hemagglutinin Hemagg 52.7 13 0.00034 15.5 5.9 39 668-707 368-408 (550)
160 PRK10426 alpha-glucosidase; Pr 52.5 13 0.00034 15.5 2.9 14 751-764 566-579 (682)
161 COG0266 Nei Formamidopyrimidin 51.0 8.2 0.00021 17.0 1.4 13 494-506 245-257 (273)
162 PRK11866 2-oxoacid ferredoxin 50.6 5.8 0.00015 18.2 0.6 15 171-185 9-23 (286)
163 pfam06428 Sec2p GDP/GTP exchan 50.5 14 0.00037 15.2 7.0 65 883-947 8-80 (101)
164 COG4694 Uncharacterized protei 49.2 15 0.00038 15.1 3.9 13 447-459 216-228 (758)
165 TIGR02836 spore_IV_A stage IV 48.9 14 0.00036 15.3 2.4 95 236-371 67-181 (492)
166 KOG0614 consensus 48.7 14 0.00037 15.3 2.4 21 235-255 213-233 (732)
167 PRK08032 fliD flagellar cappin 48.4 16 0.0004 15.0 7.7 53 884-946 408-460 (463)
168 KOG2264 consensus 47.7 16 0.0004 14.9 7.2 14 587-600 632-646 (907)
169 PRK12338 hypothetical protein; 47.5 16 0.00041 14.9 6.2 15 438-452 172-186 (320)
170 KOG2713 consensus 47.1 10 0.00026 16.4 1.4 12 590-601 209-220 (347)
171 pfam04568 IATP Mitochondrial A 47.1 16 0.00041 14.9 4.7 27 919-945 60-86 (90)
172 pfam01927 DUF82 Protein of unk 46.6 8 0.0002 17.1 0.8 20 66-85 12-31 (146)
173 pfam11376 DUF3179 Protein of u 46.2 16 0.0004 15.0 2.2 45 261-305 108-157 (261)
174 cd03450 NodN NodN (nodulation 45.8 6.5 0.00017 17.8 0.2 56 573-631 51-106 (149)
175 pfam09728 Taxilin Myosin-like 45.7 17 0.00043 14.7 8.1 63 880-945 241-306 (309)
176 TIGR00354 polC DNA polymerase 45.7 12 0.00031 15.8 1.7 11 716-726 1003-1013(1173)
177 PTZ00009 heat shock 70 kDa pro 45.3 17 0.00044 14.7 8.3 56 891-946 540-603 (657)
178 PRK07737 fliD flagellar cappin 45.1 17 0.00044 14.7 7.1 50 887-946 446-495 (502)
179 COG3579 PepC Aminopeptidase C 44.6 18 0.00045 14.6 3.4 25 155-179 138-163 (444)
180 COG2433 Uncharacterized conser 44.0 18 0.00046 14.6 7.4 33 289-321 78-112 (652)
181 pfam09726 Macoilin Transmembra 43.6 18 0.00046 14.5 6.7 14 801-814 537-550 (680)
182 pfam05809 consensus 43.4 18 0.00047 14.5 4.2 27 739-768 100-126 (172)
183 KOG1850 consensus 43.0 19 0.00047 14.5 7.8 59 881-945 248-312 (391)
184 COG1345 FliD Flagellar capping 43.0 19 0.00047 14.5 6.9 52 885-946 424-475 (483)
185 TIGR02039 CysD sulfate adenyly 43.0 16 0.00041 14.9 1.9 37 532-579 17-53 (295)
186 pfam05537 DUF759 Borrelia burg 42.7 19 0.00048 14.4 6.4 23 116-138 65-87 (439)
187 PRK11020 hypothetical protein; 42.2 19 0.00049 14.4 8.0 21 883-903 5-25 (118)
188 cd06545 GH18_3CO4_chitinase Th 40.8 20 0.00051 14.2 7.2 106 39-170 28-134 (253)
189 pfam04918 DltD_M DltD central 40.6 12 0.00031 15.8 1.0 16 388-403 23-38 (163)
190 TIGR00513 accA acetyl-CoA carb 39.3 21 0.00054 14.1 3.2 20 306-325 153-172 (329)
191 TIGR01316 gltA glutamate synth 39.0 13 0.00032 15.7 0.9 47 598-646 216-265 (462)
192 pfam09730 BicD Microtubule-ass 39.0 21 0.00054 14.0 7.5 22 882-903 626-647 (711)
193 pfam00038 Filament Intermediat 38.9 21 0.00054 14.0 7.1 62 881-945 214-275 (312)
194 KOG0804 consensus 38.5 22 0.00055 14.0 7.9 26 919-944 422-447 (493)
195 KOG2129 consensus 38.5 22 0.00055 14.0 7.7 10 591-600 437-446 (552)
196 PRK11869 2-oxoacid ferredoxin 37.7 12 0.00032 15.7 0.6 17 169-185 4-20 (284)
197 TIGR02169 SMC_prok_A chromosom 36.8 23 0.00058 13.8 8.3 59 880-945 915-973 (1202)
198 smart00313 PXA Domain associat 36.7 23 0.00059 13.8 2.0 11 904-914 156-166 (176)
199 KOG2369 consensus 36.6 18 0.00047 14.5 1.4 75 360-438 127-203 (473)
200 COG1501 Alpha-glucosidases, fa 36.3 23 0.00059 13.7 3.0 19 289-307 201-219 (772)
201 pfam02450 LACT Lecithin:choles 35.6 22 0.00057 13.9 1.7 70 360-436 68-138 (382)
202 KOG0996 consensus 35.6 24 0.00061 13.7 6.6 17 66-82 91-107 (1293)
203 TIGR01063 gyrA DNA gyrase, A s 35.5 24 0.00061 13.7 6.2 43 883-929 454-496 (864)
204 pfam08657 DASH_Spc34 DASH comp 35.3 24 0.00061 13.6 5.7 22 879-900 188-209 (212)
205 KOG0995 consensus 35.3 24 0.00061 13.6 7.8 14 357-370 74-87 (581)
206 pfam11499 DUF3214 Protein of u 35.2 24 0.00062 13.6 7.3 30 917-946 41-70 (77)
207 PRK13182 racA polar chromosome 35.1 24 0.00062 13.6 10.7 55 886-946 91-149 (178)
208 pfam01576 Myosin_tail_1 Myosin 35.1 24 0.00062 13.6 7.9 26 920-945 787-812 (859)
209 COG5270 PUA domain (predicted 34.6 13 0.00034 15.5 0.4 24 165-188 2-25 (202)
210 PRK06664 fliD flagellar hook-a 34.2 25 0.00064 13.5 7.0 52 886-947 626-677 (684)
211 TIGR01186 proV glycine betaine 34.0 21 0.00053 14.1 1.3 74 241-325 214-288 (372)
212 PRK08724 fliD flagellar cappin 33.6 26 0.00065 13.4 7.0 50 887-946 634-683 (686)
213 TIGR02890 spore_yteA sporulati 33.4 15 0.00039 15.1 0.5 12 381-392 87-98 (167)
214 TIGR00092 TIGR00092 GTP-bindin 32.8 26 0.00067 13.3 5.5 12 754-765 324-335 (390)
215 TIGR02717 AcCoA-syn-alpha acet 32.6 25 0.00063 13.5 1.5 48 596-651 185-232 (457)
216 COG1579 Zn-ribbon protein, pos 32.5 27 0.00068 13.3 8.3 25 880-904 114-138 (239)
217 pfam06172 Cupin_5 Cupin superf 32.5 17 0.00044 14.7 0.7 25 285-309 113-139 (139)
218 COG1084 Predicted GTPase [Gene 32.2 12 0.0003 15.9 -0.2 121 671-811 127-249 (346)
219 PRK13795 hypothetical protein; 32.0 26 0.00067 13.3 1.6 21 168-188 3-23 (630)
220 pfam01496 V_ATPase_I V-type AT 31.7 27 0.0007 13.2 5.8 17 421-437 287-303 (707)
221 PRK13945 formamidopyrimidine-D 31.5 23 0.00058 13.8 1.2 36 601-638 145-180 (283)
222 TIGR01061 parC_Gpos DNA topois 31.3 28 0.00071 13.2 5.9 21 629-651 406-426 (745)
223 pfam12621 DUF3779 Phosphate me 30.5 28 0.00072 13.1 1.5 26 171-196 41-66 (95)
224 pfam05934 MCLC Mid-1-related c 30.0 29 0.00074 13.0 5.4 31 149-179 113-143 (577)
225 cd07622 BAR_SNX4 The Bin/Amphi 29.7 29 0.00075 13.0 7.2 61 881-943 124-185 (201)
226 pfam05863 consensus 29.5 8.1 0.00021 17.1 -1.4 14 510-523 162-176 (238)
227 KOG3188 consensus 29.4 9.9 0.00025 16.5 -1.0 10 514-523 166-175 (246)
228 pfam09139 Mmp37 Mitochondrial 29.3 21 0.00053 14.1 0.7 16 438-453 73-89 (324)
229 TIGR02336 TIGR02336 conserved 29.2 15 0.00039 15.0 -0.0 30 291-320 233-262 (767)
230 pfam01134 GIDA Glucose inhibit 29.1 26 0.00066 13.4 1.1 12 607-618 180-191 (391)
231 pfam07082 DUF1350 Protein of u 29.0 30 0.00077 12.9 1.6 17 362-378 39-55 (250)
232 PRK12704 phosphodiesterase; Pr 28.9 30 0.00077 12.9 8.0 23 348-370 80-102 (455)
233 PRK05561 DNA topoisomerase IV 28.9 30 0.00077 12.9 6.5 56 156-215 47-112 (745)
234 pfam12574 120_Rick_ant 120kDa 28.8 14 0.00037 15.2 -0.2 13 586-598 21-33 (39)
235 COG3966 DltD Protein involved 28.7 25 0.00064 13.5 1.0 15 389-403 120-134 (415)
236 TIGR01340 aconitase_mito aconi 28.5 20 0.00051 14.2 0.5 16 494-509 421-436 (761)
237 pfam05524 PEP-utilizers_N PEP- 28.4 31 0.00079 12.8 5.6 30 879-908 31-60 (123)
238 PRK05294 carB carbamoyl phosph 28.3 22 0.00057 13.9 0.7 16 125-140 151-166 (1063)
239 pfam11062 DUF2863 Protein of u 28.0 31 0.0008 12.8 1.8 15 773-787 312-326 (398)
240 cd00187 TOP4c DNA Topoisomeras 27.8 32 0.00081 12.8 4.7 37 883-923 405-441 (445)
241 KOG3067 consensus 27.7 32 0.00081 12.8 3.1 15 640-654 170-184 (226)
242 COG2840 Uncharacterized protei 27.4 30 0.00077 12.9 1.2 54 348-402 99-153 (184)
243 PRK03147 thiol-disulfide oxido 27.2 32 0.00082 12.7 3.7 13 313-325 140-152 (176)
244 TIGR01369 CPSaseII_lrg carbamo 27.1 20 0.0005 14.3 0.2 111 110-238 127-250 (1089)
245 pfam09508 Lact_bio_phlase Lact 26.3 20 0.0005 14.3 0.1 11 773-783 626-636 (716)
246 KOG0616 consensus 26.2 34 0.00086 12.6 2.7 25 153-177 149-173 (355)
247 TIGR00998 8a0101 efflux pump m 26.1 34 0.00086 12.6 6.6 17 858-874 268-284 (379)
248 COG3110 Uncharacterized protei 25.4 18 0.00047 14.5 -0.2 14 589-602 35-48 (216)
249 KOG2760 consensus 25.3 25 0.00064 13.5 0.5 29 749-785 326-354 (432)
250 pfam04156 IncA IncA protein. C 25.2 35 0.00089 12.4 6.7 25 921-945 156-180 (186)
251 cd00632 Prefoldin_beta Prefold 25.2 35 0.00089 12.4 7.1 45 880-938 60-104 (105)
252 PRK01474 atpC F0F1 ATP synthas 25.2 20 0.00052 14.2 0.0 21 827-847 27-47 (112)
253 TIGR02303 HpaG-C-term 4-hydrox 25.2 35 0.00089 12.4 1.8 14 533-546 205-218 (249)
254 PRK10526 acyl-CoA thioesterase 25.1 10 0.00026 16.3 -1.5 33 363-396 41-78 (286)
255 cd00089 HR1 Protein kinase C-r 25.0 35 0.0009 12.4 7.1 29 918-946 42-70 (72)
256 pfam10473 Cenp-F_leu_zip Leuci 25.0 35 0.0009 12.4 6.7 62 877-944 74-138 (140)
257 pfam10243 MIP-T3 Microtubule-b 25.0 35 0.0009 12.4 8.7 21 581-601 302-322 (506)
258 KOG4061 consensus 24.5 36 0.00092 12.3 3.0 70 588-657 36-125 (217)
259 PRK11867 2-oxoglutarate ferred 23.8 28 0.00071 13.1 0.5 15 172-186 11-25 (280)
260 TIGR02417 fruct_sucro_rep D-fr 23.6 37 0.00095 12.2 1.8 23 232-266 117-139 (335)
261 COG1751 Uncharacterized conser 23.4 38 0.00096 12.2 1.4 19 353-371 66-84 (186)
262 TIGR02636 galM_Leloir galactos 23.4 38 0.00096 12.2 2.2 49 248-296 159-207 (346)
263 pfam04437 RINT1_TIP1 RINT-1 / 23.3 38 0.00096 12.2 5.5 28 588-615 242-269 (485)
264 PRK13794 hypothetical protein; 23.3 38 0.00097 12.2 1.4 19 170-188 3-21 (473)
265 smart00434 TOP4c DNA Topoisome 23.2 38 0.00097 12.2 3.3 28 883-910 415-442 (445)
266 pfam00521 DNA_topoisoIV DNA gy 23.2 38 0.00097 12.2 7.6 28 882-909 392-419 (428)
267 KOG1962 consensus 23.2 38 0.00097 12.2 6.7 14 930-943 198-211 (216)
268 KOG3361 consensus 23.1 31 0.00079 12.8 0.6 37 283-329 47-83 (157)
269 pfam10520 Kua-UEV1_localn Kua- 23.1 25 0.00063 13.5 0.1 14 284-297 1-14 (178)
270 TIGR01057 topA_arch DNA topois 23.0 38 0.00098 12.2 2.0 20 789-808 541-560 (637)
271 COG4905 Predicted membrane pro 22.7 39 0.00099 12.1 1.3 10 746-755 123-132 (243)
272 COG1656 Uncharacterized conser 22.4 39 0.00099 12.1 1.0 19 66-84 18-37 (165)
273 PRK09628 oorB 2-oxoglutarate-a 22.4 23 0.00059 13.7 -0.1 16 171-186 10-25 (281)
274 pfam06844 DUF1244 Protein of u 21.7 40 0.001 12.0 2.8 23 701-723 6-28 (68)
275 pfam05700 BCAS2 Breast carcino 21.4 41 0.001 11.9 7.7 25 881-905 141-165 (221)
276 KOG0450 consensus 21.2 41 0.0011 11.9 1.4 19 65-83 133-153 (1017)
277 pfam12252 SidE Dot/Icm substra 20.8 42 0.0011 11.8 4.0 25 684-708 1036-1060(1443)
278 smart00435 TOPEUc DNA Topoisom 20.7 42 0.0011 11.8 7.8 14 679-692 206-219 (391)
279 KOG0981 consensus 20.7 42 0.0011 11.8 5.4 20 673-692 559-578 (759)
280 pfam08744 NOZZLE Plant transcr 20.7 42 0.0011 11.8 2.8 15 350-364 62-76 (333)
281 pfam09735 Nckap1 Membrane-asso 20.5 43 0.0011 11.8 1.1 19 592-612 601-619 (1118)
282 smart00787 Spc7 Spc7 kinetocho 20.5 43 0.0011 11.8 7.2 15 932-946 271-285 (312)
283 TIGR01000 bacteriocin_acc bact 20.2 43 0.0011 11.8 6.3 65 880-944 258-322 (476)
284 PRK05778 2-oxoglutarate ferred 20.1 42 0.0011 11.9 0.8 16 171-186 12-27 (306)
No 1
>TIGR00422 valS valyl-tRNA synthetase; InterPro: IPR002303 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=2109.74 Aligned_cols=891 Identities=44% Similarity=0.828 Sum_probs=821.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCE--EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 876789789889999999876986445345489980--899728449999865437889677999998767089835677
Q gi|254780933|r 3 IDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGV--FCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQ 80 (947)
Q Consensus 3 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~--f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~ 80 (947)
|+++|||.++|++||+.|++.++|+++.+.+...++ |+++.||||+||.|||||||+.|++|+++|||||+||+|||+
T Consensus 1 ~~~~Y~P~~vE~~~Y~~W~~~~~F~~~~~~~~~~~~~~f~i~~PPPNvTG~LH~GHAl~~~l~D~l~RykRM~G~~vLw~ 80 (970)
T TIGR00422 1 MPKDYDPKEVEKKLYDKWEKSGFFKPDGNSNKKVEPKRFCIVIPPPNVTGSLHIGHALNWSLQDILARYKRMKGYNVLWL 80 (970)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 98888776777999999872785022686446537775157178258555511668999999999998542178712578
Q ss_pred CCCCCCCHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHH
Q ss_conf 8815454089999999976745--99877779899999999999999999999999808366427981158867999999
Q gi|254780933|r 81 PGTDHAGIATQITVESRLFAQS--SLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVR 158 (947)
Q Consensus 81 ~G~D~~GlPiE~~vek~l~~~~--~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~ 158 (947)
+||||||||||.+|||++++++ +++++|+||++|+++|++|++++...|++|++|||+|+||+|++|||||.|+++|+
T Consensus 81 ~G~DHAGIATQ~~vE~~~~~~~ikgK~k~D~gRe~F~~~~~ewk~e~~~~I~~Q~~rLG~S~DWsrE~FTmd~~l~~~V~ 160 (970)
T TIGR00422 81 PGTDHAGIATQVKVEKKLKAEEIKGKTKHDLGREEFVEKIWEWKEESGGTIKNQIKRLGVSLDWSRERFTMDEGLSKAVK 160 (970)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHH
T ss_conf 88665763246899999876225788778788689999999999887799999999808850235004544888888999
Q ss_pred HHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHH---HCCC-CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 9999999889433133202203776780148686---5414-68766999965304530001245555544245688716
Q gi|254780933|r 159 NAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEV---IQKE-VDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDY 234 (947)
Q Consensus 159 ~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev---~~~~-~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (947)
.+|++||++||||||+++|||||+|+||+||+|| +|++ +++..|||+|||.++... ..+.++
T Consensus 161 ~~Fv~LY~~GLIYRg~~lVNWdpk~~TAiSd~EVenkeyker~~~~L~y~~Ypla~~~~~--------------~~Gkd~ 226 (970)
T TIGR00422 161 EAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVENKEYKERVKGKLYYIRYPLANGSKT--------------ADGKDY 226 (970)
T ss_pred HHHHHHHHCCCEEECCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCC--------------CCCCCE
T ss_conf 999988554861543611372054463102333321113122266545156543488754--------------235520
Q ss_pred EEEEECCCCHHCHHHHHHHHHCCHHH-HHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99982674010102444444100012-31115423320248657321000034212232032124778556566430465
Q gi|254780933|r 235 IIVSTTRPETMFGDVAIAVHPDDYRY-KELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGL 313 (947)
Q Consensus 235 l~v~TtrPeTl~g~~a~~v~P~d~~y-~~l~G~~~~~Pl~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l 313 (947)
|+|||||||||+|||||||||+|+|| ++|+||.+++||++|+|||++|++||+||||||||+|||||+|||++++||+|
T Consensus 227 l~vATTRPETm~gDtAvaVhP~DeRYYk~L~GK~v~~PL~~r~ipiiaDe~VD~EFGTG~VKvTPAHD~ND~~~g~RH~L 306 (970)
T TIGR00422 227 LVVATTRPETMFGDTAVAVHPEDERYYKHLIGKKVILPLTGRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEVGKRHNL 306 (970)
T ss_pred EEEEECCCHHHHHCEEEEECCCCCHHHHHHCCCEEEECCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHCCEECC
T ss_conf 79972672256428288767897045785549889724567684376177546241751277608749776001341211
Q ss_pred -CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf -3111016777521366544455543465546555310015123344888998888764333210223222356665532
Q gi|254780933|r 314 -GFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTI 392 (947)
Q Consensus 314 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i 392 (947)
|++++++.+|.+++.+.-... ... .++ . +.++|+||+++|||++||++|++.|+|++.+++.|+||||||||+||
T Consensus 307 Le~i~~l~~dG~Lne~a~~~~t-G~~-~~Y-~-iP~~y~GL~~~eAR~kiv~~L~~~glL~k~~p~~~~VG~c~Rsg~vv 382 (970)
T TIGR00422 307 LEFINILDEDGLLNENAEVIDT-GKE-DVY-A-IPGEYQGLERFEARKKIVEDLKEEGLLVKIEPHTHNVGHCERSGTVV 382 (970)
T ss_pred CCHHHHCCCCCCCCCEECEEEC-CCC-CCC-C-CCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCEECCCCCEE
T ss_conf 4143331799750110011007-772-331-0-65220588889999999999986688001110003456214789343
Q ss_pred EEEEEHHHEECCCCCHHHHHHHHH-CCCCCEECCCCCHHHHHHHHCCC-CCCCCCCCCCCCCEEEEE--------CCCCC
Q ss_conf 444312221214542023334320-02441121443113567641011-123212354563102698--------38998
Q gi|254780933|r 393 EPCITEQWYLDAKVLAESAIRSAK-NGCLSFIPQSWDKSYYEWLENIQ-PWCISRQIWWGHQIPVWY--------SPDGK 462 (947)
Q Consensus 393 ~~~~~~QWfi~~~~~~~~~l~~~~-~~~i~~~P~~~~~~~~~wl~~~~-DW~ISRqr~WG~pIPvw~--------~~~~~ 462 (947)
||++++|||+++++|++.++++++ +++++|+|++++++|.+||++++ ||||||||+||||||||| |..++
T Consensus 383 EP~ls~QWFV~~~~La~~a~~~~~~~g~~~fvP~~~~~~y~~W~~~~~WDWCISRQL~WGH~IPvWY~~~E~~~~~~~~G 462 (970)
T TIGR00422 383 EPLLSKQWFVKVEKLADKALEAAEEDGEIKFVPKRFEKRYLNWLRNIRWDWCISRQLIWGHRIPVWYVEIEGEEDHKETG 462 (970)
T ss_pred ECCCCCCCEECHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 04269986217177789999998545883360216788999999638888133010202645766775135777676411
Q ss_pred EE-ECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--EEECCCEECCEEECCCCCCCEECHH----HHH-HCC
Q ss_conf 87-657623445420345567877655541002568888310--1882410022020442333201011----110-001
Q gi|254780933|r 463 LF-VENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDL--LKRDEDVLDTWFSSALWPFASLGWP----EQT-AEL 534 (947)
Q Consensus 463 ~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~DvlDtWfdSg~~p~~~l~~p----~~~-~e~ 534 (947)
.+ |+..+.+.....- ......|+.||.. ++||+||||||||||||||+++||| +++ ++|
T Consensus 463 ~~~V~~~~~~~~~~~~-------------~gp~~~c~~CG~~f~l~qd~DVLDTWFSS~LWPfs~lGWpqekG~~~~~D~ 529 (970)
T TIGR00422 463 EVYVAKEEALPDSKTN-------------TGPKEVCDKCGSVFELEQDEDVLDTWFSSSLWPFSTLGWPQEKGDETEKDL 529 (970)
T ss_pred EEEECCCCCCCCCHHC-------------CCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 4774787764101101-------------676876634587423434877545323234458874688644567766889
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHC------
Q ss_conf 23455530124554321013567776653012113378685200001443100012255431245653023320------
Q gi|254780933|r 535 KTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVID------ 608 (947)
Q Consensus 535 ~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvidp~e~i~------ 608 (947)
+.|||++++++|+||||||++||||.|.+|+.+.+..++.||+.|++||||+|++|||||||+||||||.|+|+
T Consensus 530 ~~fyPt~~L~TG~DIiFFWV~RMi~~~~~~tgDEnGkP~~PFk~v~ihGLVRDeqG~KMSKSlGNvIdP~d~I~GI~L~d 609 (970)
T TIGR00422 530 KKFYPTDLLVTGYDIIFFWVARMILRSLALTGDENGKPQVPFKDVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEGISLDD 609 (970)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCHHHHHCCCCCHH
T ss_conf 73388765653036889999999862155401358698878202586544555888512220568347698606887078
Q ss_pred -------------------------------CCCHHHHHHHHHCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf -------------------------------2540344454312335-56775434110111000012344433332024
Q gi|254780933|r 609 -------------------------------QYGADALRFYFSIMAV-QGRDINLDLERIAGYRNFITKFWNAIRFSKMK 656 (947)
Q Consensus 609 -------------------------------~yGaDalR~~l~~~~~-~~~D~~fs~~~i~~~r~f~nKLwNa~rf~~~~ 656 (947)
+||||||||+||+... +|+|++|+++++++++|||||||||+||++|+
T Consensus 610 L~~K~~~~~l~P~~~eK~~~~~~~~fpnGI~~YGaDALR~~La~~~~G~G~Di~f~~~~v~~~~nF~NKlWNA~rF~l~~ 689 (970)
T TIGR00422 610 LLEKRTGNMLQPQLAEKIKKGTKKSFPNGIPKYGADALRFTLASLVTGPGDDINFDWKRVESARNFANKLWNASRFVLMN 689 (970)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99997457778358999876432103232002060389999983586789864211898876767767889999999960
Q ss_pred CCCCC---CC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC-HHH
Q ss_conf 44577---67-67743331555677999999998889987531001024577765310013688986476530567-144
Q gi|254780933|r 657 NARHS---VS-FVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKD-SEL 731 (947)
Q Consensus 657 ~~~~~---~~-~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~~-~~~ 731 (947)
..... .. ..+....+++||||||+|+++|+.|++++|+|+|++|++.||+|+|+||||||||++|.++|+++ .+.
T Consensus 690 ~~~~~~~~~~~~~~~~~~~l~drWILs~L~~~i~~v~~~ld~Y~F~~a~~~ly~F~W~dFCD~YIE~~K~~~~~~~~~~~ 769 (970)
T TIGR00422 690 LSDDTQDELELSGGEEKLSLADRWILSKLNRTIKEVREALDKYRFNEAAKALYEFIWNDFCDWYIELVKYRLYNGNDEAE 769 (970)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 03566761135776320135469999999999999999884036778875765210134512354421431478973899
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC--CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4321000145676403456774489999999743566676756536635787877--47789899999999999999988
Q gi|254780933|r 732 VSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLI--IDDSESIEEVNWIIDLISKVRSI 809 (947)
Q Consensus 732 ~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~--~~d~~~~~~~~~~~~ii~~iR~~ 809 (947)
+++|+.+|.++|+.++|||||||||+||+|||+|.... ..|||+++||.+. ..|.++.+.++.++++|.+||++
T Consensus 770 k~~A~~~L~~vLd~~l~LLhPf~PF~tE~iwq~~~~~~----~~si~~~~yP~~~~~~~D~~~~~~~~~~~~~i~~~R~~ 845 (970)
T TIGR00422 770 KKAARDTLAYVLDKALRLLHPFMPFITEEIWQHLKEGE----ADSIMLQSYPEVDAEFVDEEAEKAFELLKEIIVSIRNL 845 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC----CEEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999852455225789998843610----10422135765233415775688899999999999888
Q ss_pred HHHCCCCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHCCCC-EEEECCC---CCCEEEEEECCEEEEEECCCCCCHHHH
Q ss_conf 898089977746599964998-99999999899999832461-5871148---887379992891999982445499999
Q gi|254780933|r 810 RTEMNVPLKAVVPLVFANIDA-HVRKRLECHKCIIDRLSSGN-IIFADCP---PDRSIQIILDGMVLFLAIGDFVDFVKE 884 (947)
Q Consensus 810 R~~~~i~~k~~i~i~~~~~~~-~~~~~l~~~~~ii~~L~~~~-i~~~~~~---~~~~~~~v~~~~~~~i~l~~~iD~~~e 884 (947)
|++.+|++.+++.+++...++ +....++.+...|+.+.+.+ |...... ...++..++.++++.+|+++++|.+++
T Consensus 846 k~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~ 925 (970)
T TIGR00422 846 KAESNIPPNAPLKVLLKYEEAEETAERLKANASDVKRLINFEEVKVVSEKPEIVTEAVAEVVPGFEVIIPVKGLINKAKE 925 (970)
T ss_pred HHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHEECCCCEEEEEHHHHHHHHHH
T ss_conf 98706786765689884260579999873118999986386505774478734553122030660477303443437899
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHH
Q ss_conf 998899999-99999999986607923678588899999999999
Q gi|254780933|r 885 RSRLKKSLE-KVLDELSSIKKKLENNQFVEKAPPSILQAEKERFS 928 (947)
Q Consensus 885 ~~rl~K~l~-~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~ 928 (947)
++||+|+++ +.+++..+++++|+|++|+.|||++++++|+.+++
T Consensus 926 l~~l~K~~~~~~~~E~~~~~~~l~ne~f~~~ap~~~~~~e~~k~~ 970 (970)
T TIGR00422 926 LARLQKQLDKKEKKEVERIEKKLENEGFVKKAPKEVIEKEKEKLE 970 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHCCC
T ss_conf 999985367889988887520014740322263889998741269
No 2
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=2009.01 Aligned_cols=870 Identities=51% Similarity=0.943 Sum_probs=818.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 98876789789889999999876986445345489980899728449999865437889677999998767089835677
Q gi|254780933|r 1 MMIDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQ 80 (947)
Q Consensus 1 ~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~ 80 (947)
++|+++|||++||++||++|+++++|+++ .++++++|+|++||||+||.|||||++|+|++|+++||+||+||+|+|+
T Consensus 1 ~e~~~~Y~~~~iE~k~~~~W~~~~~f~~~--~~~~~~~f~~~~pPP~~~G~lHiGHa~~~~i~D~i~Ry~rm~G~~V~~~ 78 (877)
T PRK05729 1 KELPKTYDPKEVEAKWYQKWEEKGYFKPD--GDKSKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWL 78 (877)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCC--CCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 98857899399999999999857997378--7789997799728898879861216674889999999987279966888
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHH
Q ss_conf 88154540899999999767459987777989999999999999999999999980836642798115886799999999
Q gi|254780933|r 81 PGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNA 160 (947)
Q Consensus 81 ~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~ 160 (947)
|||||||||+|++|||+|+. .+.+++++||++|+++|++|++++.+.|++||+|||+|+||+|+|+||||.|+++|+|+
T Consensus 79 pG~D~~Gl~~e~~vek~l~~-~g~~~~~~~re~f~~~~~~w~~~~~~~i~~q~~rlG~s~Dw~~~~~T~d~~~~~~v~~~ 157 (877)
T PRK05729 79 PGTDHAGIATQMVVERQLAA-EGKTRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASVDWSRERFTMDEGLSKAVREV 157 (877)
T ss_pred CCCCCCCCHHHHHHHHHHHH-CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHH
T ss_conf 98688860568999999987-49983544899999999999999999999999982860335898455898899999999
Q ss_pred HHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 99999889433133202203776780148686541468766999965304530001245555544245688716999826
Q gi|254780933|r 161 FVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTT 240 (947)
Q Consensus 161 F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Tt 240 (947)
|.+||++||||||.+||+|||.|+|+|||+||+|+++.++++|++|++.++ +++|+||||
T Consensus 158 F~~L~~kGliyr~~~~V~wcp~~~Tals~~EV~~~~~~~~~~~ikf~l~~~--------------------~~~l~i~TT 217 (877)
T PRK05729 158 FVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVKGKLWHIRYPLADG--------------------SDYLVVATT 217 (877)
T ss_pred HHHHHHCCCEEECCEECCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCC--------------------CCEEEEECC
T ss_conf 999998899784131236688778843567873245667338984132478--------------------874765016
Q ss_pred CCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEEC
Q ss_conf 74010102444444100012311154233202486573210000342122320321247785565664304653111016
Q gi|254780933|r 241 RPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILT 320 (947)
Q Consensus 241 rPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~ 320 (947)
||||||||+|+||||+|+||++|+|++++||++|+++||++++||++++|||+||+|||||++||+++++|+||++++++
T Consensus 218 rPeTl~~~~avav~P~dery~~l~Gk~~~~P~~~~~ipii~d~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~id 297 (877)
T PRK05729 218 RPETMLGDTAVAVNPEDERYKHLIGKKVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDFNDFEVGKRHNLPMINIMD 297 (877)
T ss_pred CCCCCCCCEEEEECCCCHHHHHHCCCEEEECCCCCEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 85234464578846887488985598898058897532871575267778461797168997899988764887434656
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHH
Q ss_conf 77752136654445554346554655531001512334488899888876433321022322235666553244431222
Q gi|254780933|r 321 PEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQW 400 (947)
Q Consensus 321 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QW 400 (947)
++|+++. ..|+|+|+++++||++|+++|+++|++++.++|.|+||||||||+||++++++||
T Consensus 298 ~~G~~~~------------------~~~~~~G~~~~~ar~~Ii~~L~~~g~l~~~~~~~h~~p~~~R~~~pi~~~~~~QW 359 (877)
T PRK05729 298 EDGTINE------------------NAGEYQGLDRFEARKAIVADLEELGLLVKIEPHKHSVGHSDRSGVVIEPYLSDQW 359 (877)
T ss_pred CCCCCCC------------------CCHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEECCCCC
T ss_conf 6764045------------------7410299708898899999999779977432135678754677856997413010
Q ss_pred EECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCC
Q ss_conf 12145420233343200244112144311356764101112321235456310269838998876576234454203455
Q gi|254780933|r 401 YLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYY 480 (947)
Q Consensus 401 fi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~ 480 (947)
||+++++++++++++++++|+|+|++++++|.+||+|++|||||||||||||||||||+++..+|....+..
T Consensus 360 Fi~~~~l~~~~l~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRqr~WG~piPvw~~~~~~~~v~~~~~~~-------- 431 (877)
T PRK05729 360 FVKMKPLAKPALEAVEDGKIKFVPKRWENTYFHWMENIQDWCISRQLWWGHRIPAWYDEDGEVYVGRTEPEA-------- 431 (877)
T ss_pred EECCCHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCHHHH--------
T ss_conf 000335799999986058831257788849999860565551135544688425899189848941675664--------
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CCCEEECCCEECCEEECCCCCCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 67877655541002568888-31018824100220204423332010111100012345553012455432101356777
Q gi|254780933|r 481 LSQDNDMTVKVRKMIKDGNI-SDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMM 559 (947)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~-~~~~~r~~DvlDtWfdSg~~p~~~l~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~ 559 (947)
|+.| +..++||+||||||||||+|||+++|||+++++|++|||+|++++|+||+|||++||++
T Consensus 432 ----------------~~~~~~~~~~~d~DVlDtWFsSgl~p~s~lg~p~~~~~~~~~~P~d~~~~G~Dii~fWv~rm~~ 495 (877)
T PRK05729 432 ----------------RAKAGSENLTQDEDVLDTWFSSALWPFSTLGWPDKTPDLKRFYPTSVLVTGFDIIFFWVARMIM 495 (877)
T ss_pred ----------------HHHCCCCCCEECCCCCCCHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHEEEEEEEEC
T ss_conf ----------------4323876525565322334431666644166865205442478875452065521134444431
Q ss_pred HHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 66530121133786852000014431000122554312456530233202540344454312335567754341101110
Q gi|254780933|r 560 MGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGY 639 (947)
Q Consensus 560 ~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~ 639 (947)
++++++ ++.||++|++||||+|++|+|||||+||||||.++|++||||++|||+++++++|+|++||++.++++
T Consensus 496 ~~~~~~------~~~Pfk~v~~hG~v~D~~G~KMSKS~GNvidP~~vi~~yGaDalR~~l~~~~~~g~di~~~~~~v~~~ 569 (877)
T PRK05729 496 MGLHFT------GQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGY 569 (877)
T ss_pred CEEEEC------CCCCCHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 032011------23761102004437889887787878898998999987191999999997077676600068999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHH
Q ss_conf 000123444333320244457767-6774333155567799999999888998753100102457776531001368898
Q gi|254780933|r 640 RNFITKFWNAIRFSKMKNARHSVS-FVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVE 718 (947)
Q Consensus 640 r~f~nKLwNa~rf~~~~~~~~~~~-~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie 718 (947)
|+|+|||||++||+.++....... ..+...++.+|+||+++|+++++.|+++|++|+|++|++.||+|+|++|||||||
T Consensus 570 r~f~nKlwN~~rf~~~~~~~~~~~~~~~~~~~~~~D~WIlskL~~~i~~v~~~~~~y~f~~a~~~ly~F~w~d~cdwYlE 649 (877)
T PRK05729 570 RNFANKLWNASRFVLMNLEGQDPGFLPDEAELSLADRWILSRLNRTVAEVTEALDKYRFDEAAQALYEFIWNEFCDWYLE 649 (877)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999972465664445662106787999999999999999875000209999999999846755789999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC--CCCHHHHHHH
Q ss_conf 64765305671444321000145676403456774489999999743566676756536635787877--4778989999
Q gi|254780933|r 719 FIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLI--IDDSESIEEV 796 (947)
Q Consensus 719 ~~K~~l~~~~~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~--~~d~~~~~~~ 796 (947)
++|++++++++..+++++.+|+++|+.+++||||||||+||||||.|++ ..+||++++||++. ..|.+++++|
T Consensus 650 ~~K~rl~~~~~~~~~~~~~~L~~vL~~~L~lLhPfmPFitEElwq~L~~-----~~~si~~~~wP~~~~~~~d~~~e~~~ 724 (877)
T PRK05729 650 LAKPVLNGGDEAAKRGTRATLAYVLEEILRLLHPFMPFITEELWQKLAP-----EGESIMLAPWPEADEALIDEAAEADF 724 (877)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-----CCCEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 9799770887788999999999999999998560135759999985778-----89746863799997100798999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEE-EE--CCCCCCEEEEEECCEEEEE
Q ss_conf 99999999999888980899777465999649989999999989999983246158-71--1488873799928919999
Q gi|254780933|r 797 NWIIDLISKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLECHKCIIDRLSSGNII-FA--DCPPDRSIQIILDGMVLFL 873 (947)
Q Consensus 797 ~~~~~ii~~iR~~R~~~~i~~k~~i~i~~~~~~~~~~~~l~~~~~ii~~L~~~~i~-~~--~~~~~~~~~~v~~~~~~~i 873 (947)
+.++++|+.||++|+++||++++++++.+.+.+....+.+..+..+|+.|++++.+ .. ..++++++.+++++.++++
T Consensus 725 ~~~~eiI~~iRs~R~e~nI~~k~~l~v~i~~~~~~~~~~l~~~~~~I~~La~~~~i~~~~~~~~~~~~~~~v~~~~~i~i 804 (877)
T PRK05729 725 EWLKELITAIRNIRAEMNIPPSKKLPLLLKGADAEDRARLERNEAYIKRLARLESIEILAEGEAPEGAATAVVGGAELFL 804 (877)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEECCEEEEE
T ss_conf 99999999999999972989898205999729889999999989999998587706865777789886599958879999
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8244549999999889999999999999986607923678588899999999999999999999999999861
Q gi|254780933|r 874 AIGDFVDFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIRM 946 (947)
Q Consensus 874 ~l~~~iD~~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l~~ 946 (947)
+++++||+++|++||+|++++++++|+++++||+|++|++|||++||+++|+|++++++++++|+++|++|++
T Consensus 805 ~l~~~ID~~~E~~RL~K~l~kl~~ei~~i~~kLsN~~Fi~kAP~~VV~~ek~Kl~~~~~~i~~i~~~L~~Lk~ 877 (877)
T PRK05729 805 PLEGLIDVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYQEKLEKLKERLARLKA 877 (877)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8888758899999999999999999999997767856667389999999999999999999999999997259
No 3
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=1965.12 Aligned_cols=870 Identities=49% Similarity=0.889 Sum_probs=806.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 87678978988999999987698644534548998089972844999986543788967799999876708983567788
Q gi|254780933|r 3 IDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPG 82 (947)
Q Consensus 3 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G 82 (947)
|+|+|||.++|++||++|++++.|++..+... ++|+|+.||||+||.||||||+++|++|+++||+||+||+|+|+||
T Consensus 1 ~~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~--~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG 78 (877)
T COG0525 1 LPKTYDPKEIEEKWYKKWEESGYFKPDPNEDK--PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPG 78 (877)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 99877846650899877886698567887778--9727968979988865116545378999999998707973335798
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHH
Q ss_conf 15454089999999976745998777798999999999999999999999998083664279811588679999999999
Q gi|254780933|r 83 TDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFV 162 (947)
Q Consensus 83 ~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~ 162 (947)
|||+|||+|.+|||+++.+ |.+++++||++|+++||+|++++.+.|++||+|||+|+||+|+|+||||.++++|+.+|+
T Consensus 79 ~DhAGIaTq~~VEk~l~~~-g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv 157 (877)
T COG0525 79 TDHAGIATQVVVEKQLAAE-GITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFV 157 (877)
T ss_pred CCCCCCHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 7778830899999999870-988010589999999999999998999999998478735553112679889999999999
Q ss_pred HHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 99988943313320220377678014868654146876699996530453000124555554424568871699982674
Q gi|254780933|r 163 VLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRP 242 (947)
Q Consensus 163 ~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrP 242 (947)
+||++||||||.++|||||+|+|+|||+||++++++|..|||+|++.++ +++|+||||||
T Consensus 158 ~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~--------------------~~~i~VATTRP 217 (877)
T COG0525 158 RLYEKGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADG--------------------DGYLVVATTRP 217 (877)
T ss_pred HHHHCCCEEECCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEEECCCC--------------------CCEEEEEECCC
T ss_conf 9997894651487434788633402044500011003689999753899--------------------86389981686
Q ss_pred CHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCC
Q ss_conf 01010244444410001231115423320248657321000034212232032124778556566430465311101677
Q gi|254780933|r 243 ETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPE 322 (947)
Q Consensus 243 eTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~ 322 (947)
|||+|||||||||+|+||++|+|+.+++|++|++|||++|+|||++||||+||+|||||++||+++++|+||++++++++
T Consensus 218 EtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~d 297 (877)
T COG0525 218 ETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDED 297 (877)
T ss_pred CCCCCCEEEEECCCCHHHHHHCCCEEECCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCCCEEEECCC
T ss_conf 30102669998998766686358889646889753353473347767874189716999406545301798720688899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEE
Q ss_conf 75213665444555434655465553100151233448889988887643332102232223566655324443122212
Q gi|254780933|r 323 AKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYL 402 (947)
Q Consensus 323 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi 402 (947)
|+++... .|+|+||++++||++|+++|++.|+|++.+++.|+||||||||+||+|++++|||+
T Consensus 298 G~in~~~-----------------~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfV 360 (877)
T COG0525 298 GRINEEA-----------------AGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFV 360 (877)
T ss_pred CEECCCC-----------------CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEECCEEEE
T ss_conf 7054677-----------------64458986999999999999968996766444541761167796020123242148
Q ss_pred CCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-CCCCEEECCCCHHHHHHCCCCCC
Q ss_conf 14542023334320024411214431135676410111232123545631026983-89988765762344542034556
Q gi|254780933|r 403 DAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYS-PDGKLFVENTEDAALRSAIDYYL 481 (947)
Q Consensus 403 ~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~~~~DW~ISRqr~WG~pIPvw~~-~~~~~~v~~~~~~~~~~~~~~~~ 481 (947)
++..+++++++++++++++|+|++++++|.+|++|++|||||||||||||||+||| +++.+++..... .....
T Consensus 361 k~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~~~-~~~~~----- 434 (877)
T COG0525 361 KVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEEEP-EDPAA----- 434 (877)
T ss_pred EHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCCCCEEECCCCC-CCHHH-----
T ss_conf 707526999998745984681688998899998638376422211317635159966998389678654-35354-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCEECCEEECCCCCCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 78776555410025688883101882410022020442333201011110001234555301245543210135677766
Q gi|254780933|r 482 SQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMG 561 (947)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtWfdSg~~p~~~l~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~ 561 (947)
...|+. ..++||+||||||||||+|||+++|||+++++|+++||+|++++|+||||||++||+|++
T Consensus 435 ------------~~~~~~--~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~~ 500 (877)
T COG0525 435 ------------AEKCPK--EELEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRG 500 (877)
T ss_pred ------------HCCCCH--HCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCEECCCCHHHHHHHHHHHHHH
T ss_conf ------------246822--020578523233241156464006898744477735887300355313389999999999
Q ss_pred HHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 53012113378685200001443100012255431245653023320254034445431233556775434110111000
Q gi|254780933|r 562 LYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRN 641 (947)
Q Consensus 562 ~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r~ 641 (947)
.+++ +..||+.|++||+|+|++|+|||||+||||||.++|++|||||+||++++.+.+|+|++|++++++++||
T Consensus 501 ~~~~------~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rn 574 (877)
T COG0525 501 LHLT------GEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRN 574 (877)
T ss_pred HHHC------CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 9865------8999627898116786888887555788589799998848589999999536888665768899888999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 01234443333202444577676774333155567799999999888998753100102457776531001368898647
Q gi|254780933|r 642 FITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIK 721 (947)
Q Consensus 642 f~nKLwNa~rf~~~~~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K 721 (947)
|+|||||++||++|+..............+.+||||+++|+++++.|+++|++|+|++|++++|+|+|++|||||||++|
T Consensus 575 F~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K 654 (877)
T COG0525 575 FLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAK 654 (877)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998749999985254457654332223548899999999999999999986237889999999969989899999821
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC--CCCHHHHHHHHHH
Q ss_conf 65305671444321000145676403456774489999999743566676756536635787877--4778989999999
Q gi|254780933|r 722 SILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLI--IDDSESIEEVNWI 799 (947)
Q Consensus 722 ~~l~~~~~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~--~~d~~~~~~~~~~ 799 (947)
++++++ +..+.+++.||+++|+.+++|||||||||||||||++.+. +|||.++||.+. ..|+.+.+.++.+
T Consensus 655 ~~l~~~-~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~------~si~~~~~P~~~~~~~d~~a~~~~~~l 727 (877)
T COG0525 655 PRLYGG-EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT------ESIHLASWPEVDEELIDEEAEKEFELL 727 (877)
T ss_pred HHHCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCC------CEEEECCCCCCCHHHCCHHHHHHHHHH
T ss_conf 440285-7778999999999999999984887750157899865898------837841689863110237799999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCC-EEEECCC---CCCEEEEEECCEEEEEEC
Q ss_conf 999999998889808997774659996499899999999899999832461-5871148---887379992891999982
Q gi|254780933|r 800 IDLISKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLECHKCIIDRLSSGN-IIFADCP---PDRSIQIILDGMVLFLAI 875 (947)
Q Consensus 800 ~~ii~~iR~~R~~~~i~~k~~i~i~~~~~~~~~~~~l~~~~~ii~~L~~~~-i~~~~~~---~~~~~~~v~~~~~~~i~l 875 (947)
+++|++||++|+++|+++++++++.+... ++....++.+...|..+.+++ +...+.. +..++..++.+.++++++
T Consensus 728 ~~ii~~iR~~r~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~l 806 (877)
T COG0525 728 KEIISAIRNLRAEMNLSPSAPLKVVLVGS-EELEDRLEANEDDIKGLANLEELEILSPDPEEPPVEVTAVVGGAELFLPL 806 (877)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEECC-HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCCEEEEEC
T ss_conf 99999999999975999888506999431-76799999889999984375456521567542203577651363689854
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 44549999999889999999999999986607923678588899999999999999999999999999861
Q gi|254780933|r 876 GDFVDFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIRM 946 (947)
Q Consensus 876 ~~~iD~~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l~~ 946 (947)
+++||..+|++||+|+++++++++.++++||+|++|+.|||++||++||.++++++.++.+|+.++..|+.
T Consensus 807 ~~~id~~~e~~rl~k~~~k~~~e~~~~~~kl~ne~f~~kAp~~vv~~e~~~~~~~~~~~~~l~~~l~~l~~ 877 (877)
T COG0525 807 AGLIDLAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEERLAVLKA 877 (877)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 41343788876689999999999999988715606665599999999999888699999999999998429
No 4
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=1802.87 Aligned_cols=842 Identities=26% Similarity=0.429 Sum_probs=742.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 87678978988999999987698644534548998089972844999986543788967799999876708983567788
Q gi|254780933|r 3 IDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPG 82 (947)
Q Consensus 3 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G 82 (947)
++.+|||+++|++||++|+++++|++..+.++++|+|+|++||||+||.|||||++|+|++|+++||+||+||+|+||||
T Consensus 1 ~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~~dgPPy~nG~lHiGH~~~~tikDii~Ry~rm~G~~V~~~~G 80 (1042)
T PRK06039 1 VPSKPDFPAVEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPFANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAG 80 (1042)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 98999988988999999986899246300069999789967899878872143668789999999998738996689897
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHH
Q ss_conf 15454089999999976745998777798999999999999999999999998083664279811588679999999999
Q gi|254780933|r 83 TDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFV 162 (947)
Q Consensus 83 ~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~ 162 (947)
|||||||||++|||+||++++.+++++|+++|+++|++|+.++.+.|++|++|||+|+||+|+|+||||.|++++||+|+
T Consensus 81 wD~hGLPiE~~vek~lgi~~k~~i~~~gi~~F~~~cr~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~e~v~~~F~ 160 (1042)
T PRK06039 81 WDTHGLPVELEVEKELGISGKKDIEKYGIEKFNEECRESVLRYTDEWEEYTERLGRWVDFDNPYKTMDNSYMESVWWALK 160 (1042)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHH
T ss_conf 48677899999999847667642655289999999999999999999999998182052689827689889999999999
Q ss_pred HHHHCCCEEECCCEEEECCCCCCCCCHHHH--HCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 999889433133202203776780148686--541468766999965304530001245555544245688716999826
Q gi|254780933|r 163 VLYKDGLIYRDKRIVNWDPSLKTSVSDLEV--IQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTT 240 (947)
Q Consensus 163 ~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev--~~~~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Tt 240 (947)
+||++||||||.+||+|||.|+|+|||+|| +|+++.++++|++|++.+. .+.+++||||
T Consensus 161 ~L~ekGliYrg~~~V~wcp~~~T~Lad~Ev~~~Y~~~~~~s~~vkF~l~~~-------------------~~~~l~iwTT 221 (1042)
T PRK06039 161 QLYDKGLLYEGYRVVPYCPRCETPLSNHEVRQGYKEVKDPSVYVKFKLKGE-------------------ENEYLLAWTT 221 (1042)
T ss_pred HHHHCCCEEECCCEECCCCCCCCCCHHHHHHCCCEEEECCEEEEEEEEECC-------------------CCCEEEEECC
T ss_conf 999879989627132548988988118673057444144649999997527-------------------9847998658
Q ss_pred CCCHHCHHHHHHHHHCC-----------HH---------------------------HHHHCCCEEEECCCC-------C
Q ss_conf 74010102444444100-----------01---------------------------231115423320248-------6
Q gi|254780933|r 241 RPETMFGDVAIAVHPDD-----------YR---------------------------YKELIGKYATLPIVG-------R 275 (947)
Q Consensus 241 rPeTl~g~~a~~v~P~d-----------~~---------------------------y~~l~G~~~~~Pl~~-------~ 275 (947)
||||||||+|+||||+. ++ +++|+|+.+.||+.. +
T Consensus 222 rPwTl~~n~avaV~Pd~~Y~~v~~~~~~e~~i~a~~~~~~~~~~~~~~~~~v~~~~~G~~L~G~~y~~p~~~~~~~~~~~ 301 (1042)
T PRK06039 222 TPWTLPSNLALAVGPDIDYVKVRDKGGGEVYILAEALLEKVLKKEGGEEYEVLETFKGEELEGLRYEPPFPYFVPEDEEN 301 (1042)
T ss_pred CCCCCCCCEEEEECCCCCEEEEEECCCCEEEEEEHHHHHHHHHHCCCCCEEEEEEEECHHHCCCEEECCCCCCCCCCCCC
T ss_conf 87511113599986876369998448975999808889999855167540788775124307888778864323667787
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 57321000034212232032124778556566430465311101677752136654445554346554655531001512
Q gi|254780933|r 276 LIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDC 355 (947)
Q Consensus 276 ~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 355 (947)
.+||++++||++++|||+||+|||||++||+++++||||++++++++|+++. ..|+|+|+.|
T Consensus 302 ~~~Vi~~d~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~vd~~G~~~~------------------~~~~~~G~~v 363 (1042)
T PRK06039 302 AFRVVAADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDNGRFTE------------------EVPDYAGKFV 363 (1042)
T ss_pred CEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC------------------CCCCCCCCEE
T ss_conf 4279954720578897428967889889999999839986663177553346------------------4435179365
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCH-HHHHH
Q ss_conf 33448889988887643332102232223566655324443122212145420233343200244112144311-35676
Q gi|254780933|r 356 FAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDK-SYYEW 434 (947)
Q Consensus 356 ~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~-~~~~w 434 (947)
++|++.|+++|+++|+|++.++|.|+||||||||+||++++++||||+++++++++++++ ++|+|+|++.++ ||.+|
T Consensus 364 ~da~~~Ii~~L~~~g~l~~~~~~~Hsyp~cwR~~~pli~~~~~QWFi~~~~~k~~~l~~~--~~i~w~P~~~~~~rf~~w 441 (1042)
T PRK06039 364 KDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYRAVESWFIRVTKIKDRMLELN--QKINWYPEHIKDGRFGKW 441 (1042)
T ss_pred ECCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH--HCCEEECCCCCCCHHHHH
T ss_conf 302099999998667522466335578742577981486332627765576799999986--021473452320069999
Q ss_pred HHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCE
Q ss_conf 41011123212354563102698389988765762344542034556787765554100256888831018824100220
Q gi|254780933|r 435 LENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTW 514 (947)
Q Consensus 435 l~~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtW 514 (947)
|+|++|||||||||||||||||+|++|+.+....+...+........+.+.+...-......|+.|+..++|++||||||
T Consensus 442 l~n~~DW~ISRQR~WG~PIPvw~~~~~~~~~v~~s~~el~~~~~~~~~~dlhrp~iD~v~~~~~~~~~~~~r~~DvlD~W 521 (1042)
T PRK06039 442 LENARDWAISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEEDFGVPKPIDLHRPYIDEVTLPCPDCGTGMRRVPDVLDVW 521 (1042)
T ss_pred HHHCCCHHHHCCCCCCCCCEEEEECCCCCEEECCCHHHHHHHCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCEEEE
T ss_conf 86363311000234577540699679996670286999987608888301024545505655899862103056421237
Q ss_pred EECCCCCCCEECHHHHH-HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHH
Q ss_conf 20442333201011110-00123455530124554321013567776653012113378685200001443100012255
Q gi|254780933|r 515 FSSALWPFASLGWPEQT-AELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKM 593 (947)
Q Consensus 515 fdSg~~p~~~l~~p~~~-~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KM 593 (947)
||||+|||+++|||+++ ++|++|||+|+++||+||+||||++|+++|++++ ++.||++|++||||+|++|+||
T Consensus 522 fdSg~~p~a~~~~p~~~~~~f~~~~PaD~i~eg~Dq~RgWF~sl~~~s~~~~------~~~Pfk~v~~~G~Vld~~G~KM 595 (1042)
T PRK06039 522 FDSGSMPYAQLHYPFENKELFEEHFPADFIVEGIDQTRGWFYTLLALSTALF------DRPPYKNVIVHGHVLDEDGQKM 595 (1042)
T ss_pred EECCCCCEEEECCCCCCHHHHHCCCCCEEEEECCCHHEEEEEEEEEEEEEEC------CCCCCCEEEEEEEEECCCCEEC
T ss_conf 6358744069778643666662158644445232221014360003212234------8420025899503873686480
Q ss_pred HHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHCC--CCCCCCC--CCCCC
Q ss_conf 4312456530233202540344454312335567754341101-11000012344433332024--4457767--67743
Q gi|254780933|r 594 SKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERI-AGYRNFITKFWNAIRFSKMK--NARHSVS--FVPQD 668 (947)
Q Consensus 594 SKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i-~~~r~f~nKLwNa~rf~~~~--~~~~~~~--~~~~~ 668 (947)
|||+||+|||.++|++||||++|||+++++.+++|++||++.+ +++|+|++||||++||+.++ ...+++. ..+..
T Consensus 596 SKS~GNvidP~~vi~~yGADalRl~l~~~~~~~~d~~f~~~~v~e~~r~~~~~lwN~~rF~~~y~~ld~f~~~~~~~~~~ 675 (1042)
T PRK06039 596 SKSLGNYVDPFEVFDKYGADALRWYLLSSSVPWEDLRFSEDGIREVVRKFLLPLWNVYSFFALYANLDGFDPNEAEEALD 675 (1042)
T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 33678868979998860827999999966775556157799999999999999999999998742102799543555632
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHC
Q ss_conf 33155567799999999888998753100102457776531001368898647653056-71444321000145676403
Q gi|254780933|r 669 VKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQK-DSELVSETLSCFSYVLYNVC 747 (947)
Q Consensus 669 ~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~-~~~~~~~~~~~l~~vl~~~l 747 (947)
..+.+||||||+|+++++.|+++|++|+|+.|+++|++|+ ++||||||+++|+|+|++ ++..+.++++||+++|.+++
T Consensus 676 ~~~~~DrWils~l~~~i~~v~~~~~~y~~~~a~~~l~~Fi-~dLs~wYi~~~r~R~~~~~~~~~k~~A~~tL~~vL~~l~ 754 (1042)
T PRK06039 676 SRNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFV-DDLSNWYIRRSRRRFWKEEDDPDKLAAYNTLYTVLETLS 754 (1042)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 1668789999999999999999997245999999999999-887799999977876036897899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE-EE
Q ss_conf 456774489999999743566676756536635787877--477898999999999999999888980899777465-99
Q gi|254780933|r 748 KLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLI--IDDSESIEEVNWIIDLISKVRSIRTEMNVPLKAVVP-LV 824 (947)
Q Consensus 748 ~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~--~~d~~~~~~~~~~~~ii~~iR~~R~~~~i~~k~~i~-i~ 824 (947)
+||||||||+||||||.|... +..+|||++.||++. .+|+++++.|+.++++|+.+|++|.+.+|+.|+++. +.
T Consensus 755 ~llAP~~PFitEeiyq~L~~~---~~~eSVHl~~~P~~~~~~id~~le~~m~~~r~iv~~~r~~R~~~~ikvRqPL~~~~ 831 (1042)
T PRK06039 755 RLMAPFTPFIAEEIYQNLKGE---TGPESVHLADWPEVDESLIDPELEAAMDLVREIVSLGRSARKKANIKVRQPLSRIT 831 (1042)
T ss_pred HHHCCCHHHHHHHHHHHCCCC---CCCCEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 996501367699999844558---99951798146776612148999999999999999999999875997666266479
Q ss_pred EECCCHHHHHHHHHHHHHH-HHHCCCCEEEECCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9649989999999989999-983246158711488873799928919999824454999999988999999999999998
Q gi|254780933|r 825 FANIDAHVRKRLECHKCII-DRLSSGNIIFADCPPDRSIQIILDGMVLFLAIGDFVDFVKERSRLKKSLEKVLDELSSIK 903 (947)
Q Consensus 825 ~~~~~~~~~~~l~~~~~ii-~~L~~~~i~~~~~~~~~~~~~v~~~~~~~i~l~~~iD~~~e~~rl~K~l~~l~~~i~~~~ 903 (947)
+...+......++.+..+| .+||+.+|.+.+...+- +.++-..|..+.-.|+.|++..+.+.|..++
T Consensus 832 i~~~~~~~~~~~~~~~~~I~~ElNVk~v~~~~~~~~~------------~~~~~kpn~~~LG~r~gk~~~~v~~~i~~~~ 899 (1042)
T PRK06039 832 VAVKDEEVLEALEEYEDIIKDELNVKEVEFVDDEEDY------------VSYELKPNFKVLGPRLGKDVKAVIKAIKSGD 899 (1042)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCE------------EEEEEEECHHHHCHHHHHHHHHHHHHHHHCC
T ss_conf 9948989999999999999985283389997076612------------7999997768868776488999999998089
Q ss_pred HH
Q ss_conf 66
Q gi|254780933|r 904 KK 905 (947)
Q Consensus 904 ~k 905 (947)
..
T Consensus 900 ~~ 901 (1042)
T PRK06039 900 WE 901 (1042)
T ss_pred HH
T ss_conf 99
No 5
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=1711.82 Aligned_cols=793 Identities=32% Similarity=0.536 Sum_probs=718.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 88767897898899999998769864453454899808997284499998654378896779999987670898356778
Q gi|254780933|r 2 MIDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQP 81 (947)
Q Consensus 2 ~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~ 81 (947)
+|+++|||++||++||++|+++++|+.. .++.++|+|+|++||||+||.||+||++|+|++|+++||+||+||+|+||+
T Consensus 4 ~~~~~y~~~~iE~k~~~~W~~~~~f~~~-~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~t~~D~~~Ry~rm~G~~Vl~~~ 82 (809)
T PRK13208 4 ELPKKYDPKEIEEKWQKIWEEEGIYKFD-DEDEKKPVYIIDTPPPTVSGKLHIGHVFSYTHTDFIARYQRMRGYNVFFPQ 82 (809)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 5657899499999999999867993678-666899969990699998897213166889999999999981799669988
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHH
Q ss_conf 81545408999999997674599877779899999999999999999999999808366427981158867999999999
Q gi|254780933|r 82 GTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAF 161 (947)
Q Consensus 82 G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F 161 (947)
||||||||||++|||++| .++.++|+++|++.|++|++++++.|++|+++||+|+||+|+|+||||.|+++|||+|
T Consensus 83 G~D~~GlPie~~vek~~~----~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~y~~~v~~~f 158 (809)
T PRK13208 83 GWDDNGLPTERKVEKYYG----IRAHDISREEFIELCRELTDEDEEKFRELWRRLGLSVDWSLEYRTISPEYRRISQKSF 158 (809)
T ss_pred CCCCCCHHHHHHHHHHCC----CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 458566899999999719----9901279999999999999999999999999828614068970758878999999999
Q ss_pred HHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 99998894331332022037767801486865414687669999653045300012455555442456887169998267
Q gi|254780933|r 162 VVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTR 241 (947)
Q Consensus 162 ~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Ttr 241 (947)
.+||++||||+|++||+|||.|+|+|||+||++++..++++|++|++.+ .+.+|+|||||
T Consensus 159 ~~L~~~Gliy~g~~~v~wcp~~~T~ls~~Ev~~~~~~~~~~~ikf~~~~--------------------~~~~l~iaTTr 218 (809)
T PRK13208 159 LDLYKKGLIYRAEAPVLWCPRCRTAIAQAEVEYKEREGKLNYIKFPVKE--------------------GGEKITIATTR 218 (809)
T ss_pred HHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEECC--------------------CCCEEEEEECC
T ss_conf 9999779978742103677665755565676425677603999888517--------------------98648999578
Q ss_pred CCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECC
Q ss_conf 40101024444441000123111542332024865732100003421223203212477855656643046531110167
Q gi|254780933|r 242 PETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTP 321 (947)
Q Consensus 242 PeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~ 321 (947)
||||+||+||+|||+|+||++|+|+++++|++|+++||++++||++++|||+||+||+||++||+++++||||+++++++
T Consensus 219 PeTl~~~~av~v~P~d~ry~~l~G~~~~~P~~~~~vpi~~~~~V~~~~GTG~V~~~p~~d~~D~~~~~~~~l~~~~~id~ 298 (809)
T PRK13208 219 PELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMICTFGDQTDVTWWRELNLPLRIIIDE 298 (809)
T ss_pred HHHHHHHHCEEECCCCHHHHHHCCCEEECCCCCCEEEEEEEEEEECCCCCCCEEECCCCCCHHHEEHHHCCCCCEEEECC
T ss_conf 23765302041068857889845988971688966678634665046787835667898730330244305563000377
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHE
Q ss_conf 77521366544455543465546555310015123344888998888764333210223222356665532444312221
Q gi|254780933|r 322 EAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWY 401 (947)
Q Consensus 322 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWf 401 (947)
+|++.. ..|+|+|++|.+||++|+++|+++|++++.+++.|+||||||||+||++++++|||
T Consensus 299 ~G~~~~------------------~~~~~~G~~v~ea~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~pi~~~~~~QWf 360 (809)
T PRK13208 299 DGRITE------------------AAGKYAGLTIKEARKKIIEDLKEEGLLVKQEPITHNVKVCERCKTPIEILVTRQWF 360 (809)
T ss_pred CCCCCC------------------CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCEEEECHHHH
T ss_conf 872424------------------66345996899989999999996899413445545564114789721687524566
Q ss_pred ECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHCCC-CCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCC
Q ss_conf 21454202333432002441121443113567641011-12321235456310269838998876576234454203455
Q gi|254780933|r 402 LDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQ-PWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYY 480 (947)
Q Consensus 402 i~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~~~~-DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~ 480 (947)
|++++++++++++++ +++|+|++++++|.+||+|++ |||||||||||||||||+|++|................
T Consensus 361 i~~~~~k~~~~~~~~--~i~~~P~~~~~r~~~wl~~~~~DW~iSRqr~WGtpiPiw~~~~~~~~~~~~~~~~~~l~~--- 435 (809)
T PRK13208 361 IKVLDLKEELLERAK--EIEWYPEHMRKRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGGEGKPILADEEDLPV--- 435 (809)
T ss_pred HHHHHHHHHHHHHHH--CCEECCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHCCC---
T ss_conf 532777888887642--260058408889999984256542000012358644247605778756401487887377---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCEEECCCCCCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 67877655541002568888310188241002202044233320101111000123455530124554321013567776
Q gi|254780933|r 481 LSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMM 560 (947)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtWfdSg~~p~~~l~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~ 560 (947)
.. ....+......|+.+++.++|++||||||||||+||+++.+||.++..|+++||+|++++|+||+||||++|++.
T Consensus 436 -d~--~~~~~~~~~~~~~~~~~~~~~e~dvlD~WfdS~~~p~~~~~~~~~~~~f~~~~P~d~~~~G~Di~r~W~~~~l~~ 512 (809)
T PRK13208 436 -DP--TKDPPPGYSECCRCGPGEFEPETDVMDTWADSSITPLIVTGWLEDKELFEKLFPADLRPQGHDIIRTWLFYTILR 512 (809)
T ss_pred -CC--HHCCCCHHHCCCCCCCCCCEECCCCCCCEEECCCCHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHH
T ss_conf -81--101741110246668766330476666465567788876056321566754488524434059887399999999
Q ss_pred HHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
Q ss_conf 65301211337868520000144310001225543124565302332025403444543123355677543411011100
Q gi|254780933|r 561 GLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYR 640 (947)
Q Consensus 561 ~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r 640 (947)
+++++ +..||++|++||||+|++|+|||||+||||+|.++|++||||++|||++ .+++|+|++||++.+++++
T Consensus 513 ~~~l~------~~~Pfk~v~~~G~vld~~G~KMSKS~GNvi~p~eii~~yGADalR~~la-~~~~~~d~~~~~~~~~~~~ 585 (809)
T PRK13208 513 AYLLT------GKLPWKNIMISGMVLDPDGKKMSKSKGNVVDPEELLEKYGADAVRYWAA-NSRLGSDTRFSEKQIKIGK 585 (809)
T ss_pred HHHHC------CCCCCHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH-CCCCCCCCCCCHHHHHHHH
T ss_conf 99853------8886020111460554677434777889689789865338099999996-1894446566899999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 00123444333320244457767677433315556779999999988899875310010245777653100136889864
Q gi|254780933|r 641 NFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFI 720 (947)
Q Consensus 641 ~f~nKLwNa~rf~~~~~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~ 720 (947)
+|++||||++||+.++....... .+......+||||++++++++++++++|++|+|++|++.|++|+|++|||||||++
T Consensus 586 ~~~~klwN~~rf~~~~~~~~~~~-~~~~~~~~lDrwils~l~~~i~~v~~~~e~y~f~~a~~~i~~F~~~~l~~~Yie~~ 664 (809)
T PRK13208 586 RLLTKLWNASRFVSSFIEPEKIE-EKAPILEPVDRWILAKLNRVVKKATEALENYDFAEALEEIESFFWHDFCDNYLELV 664 (809)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999703545666-76322578899999999999999999997358999999999999998789999998
Q ss_pred HHHHHCCC-HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC--CCCHHHHHHHH
Q ss_conf 76530567-1444321000145676403456774489999999743566676756536635787877--47789899999
Q gi|254780933|r 721 KSILNQKD-SELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLI--IDDSESIEEVN 797 (947)
Q Consensus 721 K~~l~~~~-~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~--~~d~~~~~~~~ 797 (947)
|+|+|+++ ...+.+++.||+++|+.+++||||||||+||||||.|++ .+||++++||++. ..|+.++++|+
T Consensus 665 k~R~~~~~~~~~~~~a~~tL~~vL~~~l~llaP~~PfiaEeiw~~L~~------~~sV~~~~wP~~~~~~~d~~~~~~~~ 738 (809)
T PRK13208 665 KSRAYGEDGSEEQKSAIYTLYTVLRTLLKLLAPFMPFITEEIYSWLYG------GSSVHRASWPEVDELLIDEEDEELGE 738 (809)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCCEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 898714888188999999999999999999987889999999986899------98188579999982006989999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCEEEECCCCC
Q ss_conf 999999999988898089977746599964998999999998999998324-61587114888
Q gi|254780933|r 798 WIIDLISKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLECHKCIIDRLSS-GNIIFADCPPD 859 (947)
Q Consensus 798 ~~~~ii~~iR~~R~~~~i~~k~~i~i~~~~~~~~~~~~l~~~~~ii~~L~~-~~i~~~~~~~~ 859 (947)
.++++|+.||++|++.+++++++++.+....++...+.++.+..+|+.+.+ .++.+++..++
T Consensus 739 ~~~~ii~~ir~~R~~~~i~~r~pl~~i~i~~~~~~~~~l~~~~~~i~~~~nv~~v~~~e~~~e 801 (809)
T PRK13208 739 LAKEILSAVRKYKSEAGLSLKAPLKKVEIYADASVPELLEEAEEDLKAVHNIEEIELVEGDPE 801 (809)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf 999999999999997596988824558996898999999999999998538062799658841
No 6
>TIGR00392 ileS isoleucyl-tRNA synthetase; InterPro: IPR002301 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Isoleucyl-tRNA synthetase (6.1.1.5 from EC) is an alpha monomer that belongs to class Ia. The enzyme, isoleucyl-transfer RNA synthetase, activates not only the cognate substrate L-isoleucine but also the minimally distinct L-valine in the first, aminoacylation step. Then, in a second, "editing" step, the synthetase itself rapidly hydrolyzes only the valylated products , as shown from the crystal structures. ; GO: 0000166 nucleotide binding, 0004822 isoleucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006428 isoleucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1722.16 Aligned_cols=808 Identities=27% Similarity=0.467 Sum_probs=708.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 88767897898899999998769864453454899808997284499998654378896779999987670898356778
Q gi|254780933|r 2 MIDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQP 81 (947)
Q Consensus 2 ~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~ 81 (947)
+.++++||+.+|+++|++|+++++|+.....+.+++.|+|+||||||||.||+|||+|+++||+|+||++|+||+|.|.|
T Consensus 1 ~~~~~~nl~~~E~~~~~~W~~~dif~~~~~~~~~~~~F~lhDGPPYAnG~iHlGHalNKilKDii~Ryk~m~G~~v~~~p 80 (938)
T TIGR00392 1 KFPMRGNLSKREEKILKFWQEKDIFEKVKKRNKDKPEFVLHDGPPYANGAIHLGHALNKILKDIILRYKTMQGYNVTYKP 80 (938)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCC
T ss_conf 98877882125757776677899999999850899835874485876799740255666761123210112250032047
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHH
Q ss_conf 81545408999999997674599877779-89999999999999999999999980836642798115886799999999
Q gi|254780933|r 82 GTDHAGIATQITVESRLFAQSSLTREDIG-RDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNA 160 (947)
Q Consensus 82 G~D~~GlPiE~~vek~l~~~~~~~~~~~g-~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~ 160 (947)
||||||||||++|||+||+.++..++..+ +++|+++|++++-++.+.|++||+|||+|+||+++|.|||++|++++||+
T Consensus 81 GWDtHGLPIE~~Vek~lg~~~~~~~~~~~g~E~fr~~Cr~~A~~~~~~q~~~F~rLG~w~Dwe~pY~T~d~~y~~~~w~~ 160 (938)
T TIGR00392 81 GWDTHGLPIELKVEKKLGISGKKEIESLEGIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWL 160 (938)
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 86657870244564047876400022044389999999999999999999888853120225578506788999999999
Q ss_pred HHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCC-----CCCCEEEEEEEEECCCCCC--CCCCCCCCCCCCCCCCCC
Q ss_conf 999998894331332022037767801486865414-----6876699996530453000--124555554424568871
Q gi|254780933|r 161 FVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKE-----VDGNLWYVRYPLVEGVTYR--HPIKFDDDAKPIDWEVRD 233 (947)
Q Consensus 161 F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~-----~~~~~~~ik~~l~~~~~~~--~~~~~~~~~~~~~~~~~~ 233 (947)
|++|++||||||+.+||+|||+|+||||++||+|.+ +.++|+||+|++....... .....+.. ...+.
T Consensus 161 l~~~~eKGL~~~~~kpv~WSp~~~TaLAeaE~ey~~~Y~d~v~dpS~yv~F~~~~~~~~~rh~~~~~~~~-----n~~~~ 235 (938)
T TIGR00392 161 LKELHEKGLLYRGLKPVYWSPRCETALAEAEVEYKEEYKDNVKDPSIYVKFPVKKDSKTERHAKVKLSGV-----NGLDI 235 (938)
T ss_pred HHHHHHCCCEEECCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHCCCC-----CCCCC
T ss_conf 9999752420225522114414467024763058873215760622889875315612567887426875-----78886
Q ss_pred EEEEEECCCCHHCHHHHHHHHHC----------CH------------------------------------HHHHHCCCE
Q ss_conf 69998267401010244444410----------00------------------------------------123111542
Q gi|254780933|r 234 YIIVSTTRPETMFGDVAIAVHPD----------DY------------------------------------RYKELIGKY 267 (947)
Q Consensus 234 ~l~v~TtrPeTl~g~~a~~v~P~----------d~------------------------------------~y~~l~G~~ 267 (947)
+|+||||||||||||+||||||| |+ .+++|.|..
T Consensus 236 ~l~iWTTTPWTLPaN~Aiav~pd~eY~~~~~~~~y~g~~~~~i~a~~L~e~l~~~~g~~h~~~~~e~~~~~kG~~Le~l~ 315 (938)
T TIGR00392 236 SLVIWTTTPWTLPANLAIAVHPDFEYALVQLETDYSGKEEYLILAKKLVEKLLNKLGVEHDITDYEIIKTFKGSDLEGLE 315 (938)
T ss_pred EEEEECCCCCHHHHHHHEEECCCEEEEEEEECCCCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCE
T ss_conf 89996688714466416011445068999866874663125551256789886421553453110786555164416524
Q ss_pred EEECCCCCCC--------------------CCC-CCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCC--CCCCEECCCCC
Q ss_conf 3320248657--------------------321-000034212232032124778556566430465--31110167775
Q gi|254780933|r 268 ATLPIVGRLI--------------------PIV-SDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGL--GFINILTPEAK 324 (947)
Q Consensus 268 ~~~Pl~~~~i--------------------pi~-~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l--~~~~~~~~~g~ 324 (947)
+.|||.++.. |++ .++||+.+.||||||+|||||++||.+|++||| ++.+++++.|+
T Consensus 316 Y~hpl~~~~~~~~~m~~~~L~~~~~~~e~~~~v~~gdhVT~~~GTG~VHtAPghG~eDy~~g~kygl~~e~~~pvD~~G~ 395 (938)
T TIGR00392 316 YEHPLYDKVSQLKGMVVEELIERVDEKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLPDEVLSPVDEKGV 395 (938)
T ss_pred EECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCEEECCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf 65266532201156325232231068986448984004546889722687889873289999982898643146687760
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--HHH-----------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 213665444555434655465553100151--233-----------4488899888876433321022322235666553
Q gi|254780933|r 325 IFLSENESFLENIVLSDEARNIFSEFEGLD--CFA-----------ARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVT 391 (947)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~--v~~-----------a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ 391 (947)
+........+.. =+++|++ +.+ |++.|++.|+.+|+|++.++|.|||||||||++|
T Consensus 396 y~~~~~~~~G~~-----------v~~~d~~yi~~~~R~V~~Ayd~~An~~I~~~L~~~~~Ll~~e~i~H~YPhcWRtk~P 464 (938)
T TIGR00392 396 YTEEVADFKGRF-----------VKDADKDYIIIKGRYVKDAYDDEANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTP 464 (938)
T ss_pred ECCCCCCCCCCE-----------EEECCCCEEEECCCEEECHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
T ss_conf 336677744541-----------664487224543741000433468999999984269778876655058770778984
Q ss_pred EEEEEEHHHEECC--CCCHHHHHHHHHCCCCCEECCCC-CHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEE--EC
Q ss_conf 2444312221214--54202333432002441121443-1135676410111232123545631026983899887--65
Q gi|254780933|r 392 IEPCITEQWYLDA--KVLAESAIRSAKNGCLSFIPQSW-DKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLF--VE 466 (947)
Q Consensus 392 i~~~~~~QWfi~~--~~~~~~~l~~~~~~~i~~~P~~~-~~~~~~wl~~~~DW~ISRqr~WG~pIPvw~~~~~~~~--v~ 466 (947)
||||+++||||++ +++++.+|+++ ++|+|+|++. ++||.+||+|++||||||||+||+|||||+|++|+.. +.
T Consensus 465 ~IYRAt~QWF~~~D~~~~k~~~L~~i--~~v~W~P~~~k~~R~~~~~~n~~DWcISRQR~WG~PIP~w~~e~~~~~~l~~ 542 (938)
T TIGR00392 465 VIYRATEQWFIKIDEKKIKDQMLEEI--KKVKWVPEWGKEGRFKNWLENRKDWCISRQRYWGVPIPVWYCEDTGEPVLIV 542 (938)
T ss_pred EEEECCCCCEEECCHHHHHHHHHHHC--CCEEECCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCEEEEECCCCCEEEEE
T ss_conf 57204722146635477789999862--8327614632214678876116765263356258974068866788326776
Q ss_pred CCCHHHH------HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCEEECCCCCCCEECHHHHHHCCCCCCCC
Q ss_conf 7623445------4203455678776555410025688883101882410022020442333201011110001234555
Q gi|254780933|r 467 NTEDAAL------RSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPT 540 (947)
Q Consensus 467 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtWfdSg~~p~~~l~~p~~~~e~~~~~P~ 540 (947)
..+-..+ ....+.+..... ...-......++.|++.|+|++|||||||||||+|+|++++|.++..|+..+||
T Consensus 543 ~gsi~el~~~~~~~~G~~~w~~d~~-~~~~d~~~~~~~~g~~~y~r~~DvlDVWFDSGs~~~A~~~~~~~~~~~~~~~pA 621 (938)
T TIGR00392 543 VGSIEELEELIEVEKGIDAWFEDLH-KDLLDKITLESGSGGGEYRRVPDVLDVWFDSGSMPYAVLHYPFENEKFKEVFPA 621 (938)
T ss_pred ECCHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEEECEEEEEECCCCHHHHHHHHCCCCCHHHCCCCCC
T ss_conf 0408999999998725663222344-445774134588998425871215545114001179986323210010357830
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHC--------CCCH
Q ss_conf 30124554321013567776653012113378685200001443100012255431245653023320--------2540
Q gi|254780933|r 541 SVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVID--------QYGA 612 (947)
Q Consensus 541 d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvidp~e~i~--------~yGa 612 (947)
|||+||+||+||||+|++++|+++++ -++.|||+|++||||||++|+|||||+||||||.++|+ +|||
T Consensus 622 D~i~EG~DQ~RGWFySsl~~~~~~~n----v~~~PYK~Vi~hGF~LDe~G~KMSKSlGNvV~P~~v~~G~~N~~~P~yGA 697 (938)
T TIGR00392 622 DFILEGSDQTRGWFYSSLLIGVALFN----VGKAPYKNVITHGFTLDEKGRKMSKSLGNVVDPEKVINGDENLKLPKYGA 697 (938)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC----CCCCCCCEEEECCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
T ss_conf 26860335553277999999999870----78854363453154885778544532587038599708843358875330
Q ss_pred HHHHHHHHCC-CCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHH--CCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 3444543123-3556775434110111000-0123444333320--2444577--6767743331555677999999998
Q gi|254780933|r 613 DALRFYFSIM-AVQGRDINLDLERIAGYRN-FITKFWNAIRFSK--MKNARHS--VSFVPQDVKWIVNKWIIKRLATVIN 686 (947)
Q Consensus 613 DalR~~l~~~-~~~~~D~~fs~~~i~~~r~-f~nKLwNa~rf~~--~~~~~~~--~~~~~~~~~~~~Drwils~l~~~i~ 686 (947)
|+||||+++. ..+++|+.|+++.++.+.+ +.+.+||++||+. +++.++. ....+......+|||||++++++++
T Consensus 698 D~LRlyv~~~P~~~~~Dl~~~~~~~~~v~~~~~~~~~N~~~Fl~~YanL~~f~p~~~~~~~~~~~~~Drw~L~~l~~l~~ 777 (938)
T TIGR00392 698 DILRLYVASSPSDYWEDLRFSDEILKQVAEKYRKIRWNTYRFLLTYANLDKFDPEEKAVAVEKFRELDRWILSRLNSLVE 777 (938)
T ss_pred HHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHHH
T ss_conf 48777788468740002200668999999987688999999999988760778730023112030113999999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 88998753100102457776531001368898647653056--7144432100014567640345677448999999974
Q gi|254780933|r 687 DVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQK--DSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSH 764 (947)
Q Consensus 687 ~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~--~~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~ 764 (947)
.|+++|++|+|+.++++|.+|+.++||+|||+++|+|+|++ +...++++++||+++|.+++++||||+||+||+|||+
T Consensus 778 ~v~~~~e~Y~f~~~~~~l~~F~~~~LS~wY~~~~rdr~y~~~~~~~~rr~~q~tL~~~l~~l~~~lAP~~Ph~ae~~y~~ 857 (938)
T TIGR00392 778 EVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYIEAKDNDKRRAAQTTLYYALLTLVKLLAPILPHTAEEIYQN 857 (938)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998626324678888987631200045666654342257898178999999999999999998701157999999864
Q ss_pred CCCCC-----CCCCCCEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE-EEEECCCHHH
Q ss_conf 35666-----7675653663578787--7477898999999999999999888980899777465-9996499899
Q gi|254780933|r 765 VSPQD-----DMDKQGLLCHAQWPSL--IIDDSESIEEVNWIIDLISKVRSIRTEMNVPLKAVVP-LVFANIDAHV 832 (947)
Q Consensus 765 l~~~~-----~~~~~~si~~~~wP~~--~~~d~~~~~~~~~~~~ii~~iR~~R~~~~i~~k~~i~-i~~~~~~~~~ 832 (947)
|.... ..+.++||++.+||++ ..++..+.++++.++++++.+|++|...+.++++++. +.+...++..
T Consensus 858 l~~~~~~~l~~~~~~~sv~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~l~~p~~e~~I~~~~e~~ 933 (938)
T TIGR00392 858 LKGEKPELLKYEEDEESVHLNDWPEVDEEFIDEALEASMAIVREIVEAFLALRDAANKKLRQPLKELVIGKSLEAV 933 (938)
T ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 2401022300267877502366766314554478888899999999999998899999999887467303466534
No 7
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=1656.91 Aligned_cols=791 Identities=25% Similarity=0.419 Sum_probs=683.4
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 76789789889999999876986445345489980899728449999865437889677999998767089835677881
Q gi|254780933|r 4 DKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGT 83 (947)
Q Consensus 4 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~ 83 (947)
|.++|++++|++||++|+++++|++..+.++++|+|+|++||||+||.|||||++|+|++||++||+||+||+|+|+|||
T Consensus 16 pmr~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lH~GHaln~tlkDii~Rykrm~G~~v~~~pGw 95 (910)
T PRK05743 16 PMRGNLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGW 95 (910)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 98889577749999999877907667861699897798279999898642447787899999999987589967999965
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHH
Q ss_conf 54540899999999767459987777989999999999999999999999980836642798115886799999999999
Q gi|254780933|r 84 DHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVV 163 (947)
Q Consensus 84 D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~ 163 (947)
||||||||++|+|++|. ++.++|+++|+++|++|+.++++.|++||+|||+|+||+|+|+||||.|+++++|+|.+
T Consensus 96 D~hGLPiE~~v~k~~g~----~~~~~~~~~f~~~cr~~a~~~i~~~~~q~~rlG~~~DW~~~y~T~d~~y~~~~~~~F~~ 171 (910)
T PRK05743 96 DCHGLPIELKVEKKLGK----KRKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFEYEANIIRVLGK 171 (910)
T ss_pred CCCCHHHHHHHHHHCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCEECCCHHHHHHHHHHHHH
T ss_conf 86869999999996199----81319999999999999999999999999971902645897266898899999999999
Q ss_pred HHHCCCEEECCCEEEECCCCCCCCCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 99889433133202203776780148686541468766999965304530001245555544245688716999826740
Q gi|254780933|r 164 LYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPE 243 (947)
Q Consensus 164 L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPe 243 (947)
|+++||||||.+||+|||.|+|+|||+||+|+++.++++|++|++.+..... ....+.+++|||||||
T Consensus 172 l~ekGliYr~~kpV~Wcp~~~TaLA~~EVey~d~~s~si~v~f~l~~~~~~~------------~~~~~~~~~iwTTtPw 239 (910)
T PRK05743 172 MAKKGYLYKGLKPVYWSPDCGSALAEAEVEYHDKTSPSIYVAFPVVDGKAGL------------DGLKDASLVIWTTTPW 239 (910)
T ss_pred HHHCCCEEECCCCCEECCCCCCCCCCHHEECCCEECCEEEEEEEECCCCCCC------------CCCCCCEEEEEECCHH
T ss_conf 9986996857823204899994400101005775432599998943763333------------4567743999708840
Q ss_pred HHCHHHHHHHHHC--------CHHH---------------------------HHHCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 1010244444410--------0012---------------------------3111542332024865732100003421
Q gi|254780933|r 244 TMFGDVAIAVHPD--------DYRY---------------------------KELIGKYATLPIVGRLIPIVSDVYPDPE 288 (947)
Q Consensus 244 Tl~g~~a~~v~P~--------d~~y---------------------------~~l~G~~~~~Pl~~~~ipi~~~~~V~~~ 288 (947)
|||||+|+||||+ +++| ++|+|+++.||++++.+||+.++||+++
T Consensus 240 Tl~~n~avav~p~~~Y~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~P~~~~~~pii~~d~V~~~ 319 (910)
T PRK05743 240 TLPANQAIAVHPELDYALVEVGEKLILAKDLVESVLKRLGWEDYEVLATFKGAELEGLVAQHPFYDRDSPVILGDHVTLD 319 (910)
T ss_pred HHHCCCEEEECCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCEEEEEEEECCEECCCEEECCCCCCEEEEEECCCCCCC
T ss_conf 34206468877875056403674554199899999998477430665322053503768976778965227844732677
Q ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 22320321247785565664304653111016777521366544455543465546555310015123344888998888
Q gi|254780933|r 289 FGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEK 368 (947)
Q Consensus 289 ~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~a~~~ii~~L~~ 368 (947)
+|||+||+|||||++||+++++||||++++++++|+++.. .++|+|+.|++|++.|++.|++
T Consensus 320 ~GTG~Vh~aPaHg~~D~~~~~~~~L~~~~~vd~~G~~~~~------------------~~~~~G~~v~~a~~~Ii~~L~~ 381 (910)
T PRK05743 320 AGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGVYTEE------------------APLFAGLFVFKANPKIIELLEE 381 (910)
T ss_pred CCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC------------------CCCCCCCCHHHHHHHHHHHHHH
T ss_conf 7761188578798436778876499865445877634367------------------7445883499889999999987
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCC--CHHHHHHHHHCCCCCEECCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 76433321022322235666553244431222121454--2023334320024411214431135676410111232123
Q gi|254780933|r 369 SNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKV--LAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQ 446 (947)
Q Consensus 369 ~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~--~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~~~~DW~ISRq 446 (947)
+|.|++.++|.|||||||||++||++|+++||||+|++ ++++++++++ +|+|+|+++++|+.+||+|++|||||||
T Consensus 382 ~g~L~~~~~~~Hsyp~cwR~~~Pvi~rat~QWFi~~d~~~~r~~~l~~i~--~v~~~P~~~~~r~~~~i~~r~DWcISRQ 459 (910)
T PRK05743 382 KGALLKLEKITHSYPHCWRTKKPIIFRATPQWFISMDKKTLREQALKAIE--KVKWIPSWGKNRIESMVENRPDWCISRQ 459 (910)
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCEEEECCHHHHHCCCHHHHHHHHHHHH--HCCEECHHHHHHHHHHHHCCCCCEEECC
T ss_conf 79854342101367533266886267631003423471889999999998--4674151678799999707988625213
Q ss_pred CCCCCCEEEEECCCCCEEECCCCHHH------HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCEEECCCC
Q ss_conf 54563102698389988765762344------542034556787765554100256888831018824100220204423
Q gi|254780933|r 447 IWWGHQIPVWYSPDGKLFVENTEDAA------LRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALW 520 (947)
Q Consensus 447 r~WG~pIPvw~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtWfdSg~~ 520 (947)
||||+|||||||++|+.+....+... .....+.+. ..+......+..++..++|++||||||||||++
T Consensus 460 R~WG~PIPv~~~~~~~~~~~~~~~~~~i~~~~~~~G~d~w~------~~~~~~~l~~~~~~~~~~r~~DvlD~WFdSGss 533 (910)
T PRK05743 460 RTWGVPIPIFYHKETGELHRTPELIEHVAKLFEKEGIDAWF------ELDAKELLPEGYPADQYEKETDILDVWFDSGST 533 (910)
T ss_pred CCCCCCEEEEEECCCCEECCCHHHHHHHHHHHHHCCCCCCC------CCCHHHHCCCCCCCHHEEECCCCCCCEECCCCC
T ss_conf 56688225999789970047688899999988750764112------399988378989831006447553210027986
Q ss_pred CCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 33201011110001234555301245543210135677766530121133786852000014431000122554312456
Q gi|254780933|r 521 PFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNV 600 (947)
Q Consensus 521 p~~~l~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNv 600 (947)
.++++. .....+||+|+++||.||+||||+++|+.+++++ ++.||++|++||||+|++|+|||||+|||
T Consensus 534 ~~~~~~-----~~~~~~~PaDly~eG~Dq~RgWF~s~ll~s~~~~------~~~Pfk~v~~hG~vlD~~G~KMSKS~GNv 602 (910)
T PRK05743 534 HAAVLE-----DRERLGYPADLYLEGSDQHRGWFQSSLLTSVATN------GKAPYKQVLTHGFTVDGKGRKMSKSLGNV 602 (910)
T ss_pred CHHHCC-----CCCCCCCCCCEEECCCCHHHEEHHHHHHHEEEEC------CCCCEEEEEECCEEECCCCCCCCCCCCCC
T ss_conf 311114-----6621168432323376522102366221224521------78884179861328989888888878777
Q ss_pred CCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCCHHHHHHH
Q ss_conf 53023320254034445431233556775434110111000012344433332024445776--7677433315556779
Q gi|254780933|r 601 VDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSV--SFVPQDVKWIVNKWII 678 (947)
Q Consensus 601 idp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~--~~~~~~~~~~~Drwil 678 (947)
|||.++|++||||++|+|+++... +.|+.+|.+.+++..+.++||||++||++++..+++. ...+.+.+..+|||||
T Consensus 603 idP~~ii~~yGAD~lRlwvas~d~-~~d~~~s~~il~~~~~~yrKi~Nt~rf~l~nl~~f~~~~~~~~~~~l~~lD~wiL 681 (910)
T PRK05743 603 IDPQDVIKKYGADILRLWVASTDY-SGDVRISDEILKQVAESYRRIRNTLRFLLGNLNDFDPAKDAVPYEELVELDRWAL 681 (910)
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHH
T ss_conf 998999865494099999872574-3454556899988999999999999999863216883224589244657689999
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 9999999888998753100102457776531001368898647653056--71444321000145676403456774489
Q gi|254780933|r 679 KRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQK--DSELVSETLSCFSYVLYNVCKLLHPIIPF 756 (947)
Q Consensus 679 s~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~--~~~~~~~~~~~l~~vl~~~l~ll~P~~Pf 756 (947)
++|++++++|+++|++|+|+.|++.|++|+|++||+||||++|+|+|.. ++..+++++++|+++|+++++||||||||
T Consensus 682 ~~l~~~~~~v~~~~~~y~f~~a~~~l~~F~~~dls~~Y~~~~Kdrly~~~~~~~~R~s~q~~L~~vl~~l~~llaPi~Pf 761 (910)
T PRK05743 682 HRLNELQEEIIEAYENYDFHKVYQALHNFCSVDLSSFYLDIIKDRLYTDKADSLARRSAQTALYHILEALVRWLAPILSF 761 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998635588999999988575687999876124441478984999999999999999999999866469
Q ss_pred HHHHHHHHCCCCCCCCCCCEEEECCCCCCC-CCCHHHHHHHHHHHHH---HH-HHHHHHHHCCCCCCCEEEEEEECCCHH
Q ss_conf 999999743566676756536635787877-4778989999999999---99-999888980899777465999649989
Q gi|254780933|r 757 VTEDLYSHVSPQDDMDKQGLLCHAQWPSLI-IDDSESIEEVNWIIDL---IS-KVRSIRTEMNVPLKAVVPLVFANIDAH 831 (947)
Q Consensus 757 itEeiw~~l~~~~~~~~~~si~~~~wP~~~-~~d~~~~~~~~~~~~i---i~-~iR~~R~~~~i~~k~~i~i~~~~~~~~ 831 (947)
+||||||+|++. .+||++++||+.. ..+.++.+.++.+.++ |. ++-.+|.+..|+.+....+.+.. +.+
T Consensus 762 ~~EEiw~~l~~~-----~~SV~l~~wp~~~~~~~~~l~~~w~~l~~lR~~V~k~lE~~R~~k~IgsSLea~v~l~~-~~~ 835 (910)
T PRK05743 762 TAEEIWQYLPER-----EESVFLEEWPEGPFWADEELLAKWDELRALRDEVNKALEEARNEKVIGSSLEAEVTLYA-DDE 835 (910)
T ss_pred HHHHHHHHCCCC-----CCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEE-CHH
T ss_conf 999999738899-----99768267999965569789999999999999999999999866988953503799981-889
Q ss_pred HHHHHHHHHHHHHHHCC-CCEEEE
Q ss_conf 99999998999998324-615871
Q gi|254780933|r 832 VRKRLECHKCIIDRLSS-GNIIFA 854 (947)
Q Consensus 832 ~~~~l~~~~~ii~~L~~-~~i~~~ 854 (947)
....+......+..+.. .++.+.
T Consensus 836 ~~~~L~~~~~~L~~ifivS~v~l~ 859 (910)
T PRK05743 836 LAALLASLGDELRFLLIVSQVTVA 859 (910)
T ss_pred HHHHHHHHHHHHHHHHEECEEEEE
T ss_conf 999987728899987652429996
No 8
>KOG0432 consensus
Probab=100.00 E-value=0 Score=1648.92 Aligned_cols=899 Identities=41% Similarity=0.737 Sum_probs=811.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 88767897898899999998769864453454899808997284499998654378896779999987670898356778
Q gi|254780933|r 2 MIDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQP 81 (947)
Q Consensus 2 ~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~ 81 (947)
.|++.|+++.+|++|+++|++++.|++... ..+++.|++..||||+||.||||||++.+++|.++||+||+||.|+|.|
T Consensus 41 ~~~~~y~p~~vE~~wy~ww~k~g~fkp~~~-~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~P 119 (995)
T KOG0432 41 PLPAAYSPAYVESAWYKWWEKQGFFKPEYG-PNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVP 119 (995)
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 656567861368888988987178886567-7888853251599976563106578887889999999982597533248
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHH
Q ss_conf 81545408999999997674599877779899999999999999999999999808366427981158867999999999
Q gi|254780933|r 82 GTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAF 161 (947)
Q Consensus 82 G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F 161 (947)
|+||+|+++|+.|||+|..+.+.+++++||++|+.+||+|.+++...|.+|+++||.|+||+|+++|||+...++|..+|
T Consensus 120 G~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAF 199 (995)
T KOG0432 120 GTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAF 199 (995)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHH
T ss_conf 86633524799999999871586321148999999999999885851999999835732014756034778889999999
Q ss_pred HHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCCCCCCEEEEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 999988943313320220377678014868654146876699996530453000-1245555544245688716999826
Q gi|254780933|r 162 VVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYR-HPIKFDDDAKPIDWEVRDYIIVSTT 240 (947)
Q Consensus 162 ~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~~~~~~~~ik~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~v~Tt 240 (947)
.+||+.|+|||+.|.|||||.++|++||.||++.++.++.+- +-+ |-... ..-.....++... ..+++|+|+||
T Consensus 200 vrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ei~~~t~l-~vp---Gyd~~VeFG~L~~~aY~v~-gs~~~i~VaTT 274 (995)
T KOG0432 200 VRLHEEGLIYRANRLVNWCPALRSAISDIEVESVEIPGRTLL-SVP---GYDTKVEFGVLYSFAYPVE-GSDEEIVVATT 274 (995)
T ss_pred HHHHHCCCEEECCCEEEECHHHHHHHHHHEECCEECCCCCEE-ECC---CCCCCEEEEEEEEEEEECC-CCCCEEEEECC
T ss_conf 998764846733752641366775654540012125887357-347---8776235323457787605-89873897348
Q ss_pred CCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEEC
Q ss_conf 74010102444444100012311154233202486573210000342122320321247785565664304653111016
Q gi|254780933|r 241 RPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILT 320 (947)
Q Consensus 241 rPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~ 320 (947)
|||||+|++|+||||+|.||++++|+++.||++++.+||++|.+|+++||||+|+++||||++||++|+||+|+++++++
T Consensus 275 RpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~ 354 (995)
T KOG0432 275 RPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTGRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFT 354 (995)
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEEC
T ss_conf 86411133157757877643000675443477799665663110254456662473678880678888753998126785
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHH
Q ss_conf 77752136654445554346554655531001512334488899888876433321022322235666553244431222
Q gi|254780933|r 321 PEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQW 400 (947)
Q Consensus 321 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QW 400 (947)
++|.+ ++.+|+|+||++++||++|++.|++.|++...+++++.+|.|.|||++|+|++++||
T Consensus 355 ~dG~l------------------~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW 416 (995)
T KOG0432 355 DDGLL------------------NNVCGEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQW 416 (995)
T ss_pred CCCCE------------------ECCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHH
T ss_conf 87853------------------225410047478889999999999841553167885252334777773360125400
Q ss_pred EECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECC-------CCCEEECCCCHHHH
Q ss_conf 12145420233343200244112144311356764101112321235456310269838-------99887657623445
Q gi|254780933|r 401 YLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSP-------DGKLFVENTEDAAL 473 (947)
Q Consensus 401 fi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~~~~DW~ISRqr~WG~pIPvw~~~-------~~~~~v~~~~~~~~ 473 (947)
|+++++++++++++++++++++.|+.+++++.+|++|++|||||||.||||+||+|+-. ...+++..+++.+.
T Consensus 417 ~v~c~ema~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~Wvv~rseeeA~ 496 (995)
T KOG0432 417 FVSCKEMAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAR 496 (995)
T ss_pred EEEHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 13379999999998744975877557787899997513021213444304546425620246777666168858899999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCEEECCCCCCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 42034556787765554100256888831018824100220204423332010111100012345553012455432101
Q gi|254780933|r 474 RSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFW 553 (947)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtWfdSg~~p~~~l~~p~~~~e~~~~~P~d~~~~G~Di~r~W 553 (947)
..+.+... +...-+++||+||||||||||+|||+++|||+.+++++.+||.+++-+|+||++||
T Consensus 497 ekaa~k~g----------------~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~sllETG~DILfFW 560 (995)
T KOG0432 497 EKAAEKFG----------------PGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLSLLETGHDILFFW 560 (995)
T ss_pred HHHHHHHC----------------CCCCCEEECCCCHHHHHHHCCCCCCHHCCCCCCCCCHHHCCCCHHHHCCCHHHHHH
T ss_conf 99999718----------------85321251484277766641533211048965564187629841543275278999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHC-------------------------
Q ss_conf 3567776653012113378685200001443100012255431245653023320-------------------------
Q gi|254780933|r 554 VARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVID------------------------- 608 (947)
Q Consensus 554 ~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvidp~e~i~------------------------- 608 (947)
++||+|++..|+ |+.||+.|++||||+|.+|||||||+||||||.++|+
T Consensus 561 VaRMvmLg~kLt------G~lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~ 634 (995)
T KOG0432 561 VARMVMLGLKLT------GELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAK 634 (995)
T ss_pred HHHHHHHHHHHC------CCCCCHHEEECHHHCCCCCCCCCHHHCCCCCHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 999999655551------77773411442121135245221100452488887523129999999872799989999998
Q ss_pred ------------CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCHH
Q ss_conf ------------2540344454312335567754341101110000123444333320244457---7676774333155
Q gi|254780933|r 609 ------------QYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARH---SVSFVPQDVKWIV 673 (947)
Q Consensus 609 ------------~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r~f~nKLwNa~rf~~~~~~~~---~~~~~~~~~~~~~ 673 (947)
++|.||+||.||+....++|+++|..+++++|.|||||||+.||+++..... .....+.......
T Consensus 635 ~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~~~~~~~~~ 714 (995)
T KOG0432 635 KGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTEDLSGNESLV 714 (995)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
T ss_conf 77775367887433538999999871256764444189876689999999999999987435578888223568774106
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 56779999999988899875310010245777653100136889864765305671444321000145676403456774
Q gi|254780933|r 674 NKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPI 753 (947)
Q Consensus 674 Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~~~~~~~~~~~~l~~vl~~~l~ll~P~ 753 (947)
|+||+++|+.+++.+.++|++|+|..|+.++|+|+.++|||.|||.+|+.+++++......++.||+.||+..|+|||||
T Consensus 715 d~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~~~~~~~a~~vL~~~ld~gLrll~Pf 794 (995)
T KOG0432 715 DEWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDSEALAYEARRVLYRCLDNGLRLLHPF 794 (995)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89999999999999985112001677899999999999989999985587628934544667889999999889984574
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHH
Q ss_conf 48999999974356667675653663578787--7477898999999999999999888980899777465999649989
Q gi|254780933|r 754 IPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSL--IIDDSESIEEVNWIIDLISKVRSIRTEMNVPLKAVVPLVFANIDAH 831 (947)
Q Consensus 754 ~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~--~~~d~~~~~~~~~~~~ii~~iR~~R~~~~i~~k~~i~i~~~~~~~~ 831 (947)
|||+||||||+|+.+.+. ...||+.++||.. ...|++++..|+.+++++..+|++|+.++++++.++.+.+.+++..
T Consensus 795 MPFvtEelwqrlP~r~~~-~~~si~va~yP~~~~~~~~~e~E~~~~~v~~i~~~iRslra~y~l~~~~~~~v~i~~s~~~ 873 (995)
T KOG0432 795 MPFITEELWQRLPRRKGS-KPASISVSPYPSSNELWRNEELESAFELVLAITRAIRSLRAEYNLSPKPRGSVFIASSDEE 873 (995)
T ss_pred CHHHHHHHHHHCCCCCCC-CCCCEEECCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
T ss_conf 403089999856678899-9872362588622114478899999999999999999877751888777636998058974
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEC-----CCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999989999983246158711-----488873799928919999824454999999988999999999999998660
Q gi|254780933|r 832 VRKRLECHKCIIDRLSSGNIIFAD-----CPPDRSIQIILDGMVLFLAIGDFVDFVKERSRLKKSLEKVLDELSSIKKKL 906 (947)
Q Consensus 832 ~~~~l~~~~~ii~~L~~~~i~~~~-----~~~~~~~~~v~~~~~~~i~l~~~iD~~~e~~rl~K~l~~l~~~i~~~~~kL 906 (947)
.+..++.+...|..++.++.+... .+..++...+.++.++++++++++|+++|+.+|.|++.++++++.++..++
T Consensus 874 ~~~~l~~~~~~i~~l~~~~~v~i~~~~~~~~~g~~~~~~~~~~~v~l~l~g~vd~~~e~~kl~kkl~klqk~~~~l~~r~ 953 (995)
T KOG0432 874 DKSILKEFLDEISTLTNLELVSISSPAEEDAQGCALSVASSDCQVYLPLKGLVDPDSEIQKLAKKLEKLQKQLDKLQARI 953 (995)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 35689999999987521351564478755667655633688618988724677817899999999999999999999886
Q ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 79236785888999999999999999999999999998619
Q gi|254780933|r 907 ENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIRML 947 (947)
Q Consensus 907 ~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l~~l 947 (947)
++..|..|||.++.+.+++|++++.++|+.+.+.+..|++|
T Consensus 954 ~~~~~~~k~p~~v~~~~~~Kl~~~~~ei~~~~~~~~~l~~~ 994 (995)
T KOG0432 954 SSSDYQEKAPLEVKEKNKEKLKELEAEIENLKAALANLKSL 994 (995)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 04453213887888888999999999999999877640168
No 9
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=0 Score=1631.42 Aligned_cols=792 Identities=22% Similarity=0.320 Sum_probs=680.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 87678978988999999987698644534548998089972844999986543788967799999876708983567788
Q gi|254780933|r 3 IDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPG 82 (947)
Q Consensus 3 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G 82 (947)
-|+++|++++|++||++|+++++|+...+.++++|+|+|+|||||+||.|||||++|+|++|+++||+||+||+|+||||
T Consensus 20 fp~r~nl~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~~~dGPPyanG~lH~GHaln~tikDii~Rykrm~G~~V~~~~G 99 (966)
T PRK13804 20 FPMRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPG 99 (966)
T ss_pred CCCCCCCHHHCHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99888812326999999875489999998568999769957999999986122556668999999998748996689997
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHH
Q ss_conf 15454089999999976745998777798999999999999999999999998083664279811588679999999999
Q gi|254780933|r 83 TDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFV 162 (947)
Q Consensus 83 ~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~ 162 (947)
|||||||||++|||+++.+++ ++.++|+++|+++|++|+.++++.|++||+|||+|+||+|+|.||||.|++++||+|.
T Consensus 100 wD~hGLPiE~~vek~l~~~~~-~~~~~~~~~f~~~cr~~a~~~i~~~~~q~~rlG~~~DW~~~y~T~dp~y~~~~~~~F~ 178 (966)
T PRK13804 100 WDCHGLPIEWKIEEKYRAKGK-NKDEVPLNEFRKECREYALSWIDVQREEFKRLGVIGDWENPYTTMDFHAEARIAREFM 178 (966)
T ss_pred CCCCCHHHHHHHHHHHHHCCC-CHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 688878999999997765289-8233899999999999999999999999998292022589842289899999999999
Q ss_pred HHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 99988943313320220377678014868654146876699996530453000124555554424568871699982674
Q gi|254780933|r 163 VLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRP 242 (947)
Q Consensus 163 ~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrP 242 (947)
+||++||||||.+||+|||.|+|+|||+||+|+++.++++|++|++.+.... ...+.+++||||||
T Consensus 179 ~l~ekGliYr~~~pV~Wcp~~~TaLA~~EVey~d~~s~s~~v~f~v~~~~~~--------------~~~~~~l~iwTTtP 244 (966)
T PRK13804 179 KFAAKGQLYRGSKPVMWSVVERTALAEAEVEYHDHESDTIWVKFPVKDGKGI--------------LLTGASVVIWTTTP 244 (966)
T ss_pred HHHHCCCEEECCCCCCCCCCCCCCHHHHHHCCCCEECCEEEEEEEECCCCCC--------------CCCCCCEEEEECCC
T ss_conf 9998799884385147689888662367547667866669999873466200--------------04787067750785
Q ss_pred CHHCHHHHHHHHHCCH----------------------------------------------HHHHHCCCEEEECCC---
Q ss_conf 0101024444441000----------------------------------------------123111542332024---
Q gi|254780933|r 243 ETMFGDVAIAVHPDDY----------------------------------------------RYKELIGKYATLPIV--- 273 (947)
Q Consensus 243 eTl~g~~a~~v~P~d~----------------------------------------------~y~~l~G~~~~~Pl~--- 273 (947)
||||||+|++|||+-. .+++|.|..+.||+.
T Consensus 245 wTl~~n~avav~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~l~e~~~~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~~~~ 324 (966)
T PRK13804 245 WTIPANRAISYSPDIEYGLYEVTGAENDNWAKPGEKLVVADALAESVAKKAGVESFERVRDVKADDLEAIVCAHPLKGLD 324 (966)
T ss_pred CHHHCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEEECCCEECCCEEECCCCCCC
T ss_conf 02202102024577643789950454211244551566547789999987376422787300150004766526665556
Q ss_pred ---CCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCC------CEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---8657321000034212232032124778556566430465311------1016777521366544455543465546
Q gi|254780933|r 274 ---GRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFI------NILTPEAKIFLSENESFLENIVLSDEAR 344 (947)
Q Consensus 274 ---~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 344 (947)
++.+||+.++||++++|||+||+|||||++||+++++|||+++ .+++++|+++....... .
T Consensus 325 ~~~~~~~pi~~~d~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~~L~~~~~~~i~~~vd~~G~~~~~~~~~~----------g 394 (966)
T PRK13804 325 GGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFEVWMKYGRELEVRTAIPFTVDEDGFYTEDAPGFG----------G 394 (966)
T ss_pred CCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCHHC----------C
T ss_conf 666715789816831567785637755778878899999839873103577875688760654560012----------5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCC-------CHHHHHHHHHC
Q ss_conf 55531001512334488899888876433321022322235666553244431222121454-------20233343200
Q gi|254780933|r 345 NIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKV-------LAESAIRSAKN 417 (947)
Q Consensus 345 ~~~~~~~G~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~-------~~~~~l~~~~~ 417 (947)
.......|+.+.+|++.|++.|+++|+|++.++|.|+|||||||++|||+++++||||+|++ ++++++++++
T Consensus 395 ~~v~~~~G~~~~~a~~~Ii~~L~e~g~L~~~~~~~HsyP~~wR~~~Pvi~r~t~QWFi~~~~~~~~~~~lr~~~l~~i~- 473 (966)
T PRK13804 395 ARVIDDKGKKYGDANKAVIEALIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGGTLRSRALDAIK- 473 (966)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHH-
T ss_conf 5421346873656279999999967996455641247763456786279960461478735343213899999998765-
Q ss_pred CCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf 24411214431135676410111232123545631026983899887657623445420345567877655-54100256
Q gi|254780933|r 418 GCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMT-VKVRKMIK 496 (947)
Q Consensus 418 ~~i~~~P~~~~~~~~~wl~~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 496 (947)
+++|+|+++++|+.+||+|++|||||||||||+|||||+|++|+.++.......+........ .+.... ........
T Consensus 474 -~v~~~P~~~~~r~~~~l~~~~DW~ISRQRyWG~PIPi~~~e~~~~~~~~~~~~~i~~~~~~~g-~d~w~~~~~~~~~~~ 551 (966)
T PRK13804 474 -KTRFVPAAGQNRLRGMIEDRPDWVISRQRAWGVPIPVFVDENGEILMDDEVNERIADAFEEEG-ADAWFAEGAKERFLG 551 (966)
T ss_pred -HCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHCCC
T ss_conf -435065343445551215786766631134588751798379974457567789999987618-763334574765588
Q ss_pred CCCCCCCEEECCCEECCEEECCCCCCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 88883101882410022020442333201011110001234555301245543210135677766530121133786852
Q gi|254780933|r 497 DGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPF 576 (947)
Q Consensus 497 ~~~~~~~~~r~~DvlDtWfdSg~~p~~~l~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pf 576 (947)
+..++..++|++||||||||||++++..+. +. .+..||+|++++|.||+||||+++++.+.+++ ++.||
T Consensus 552 ~~~~~~~~~r~~DvlD~WfdSgss~~~~~~---~~--~~~~~PaD~y~eG~Dq~rgWF~s~l~~s~~~~------~~~Pf 620 (966)
T PRK13804 552 GFHPGEEWTKVTDILDVWFDSGSTHAFVLE---DR--PDLPWPADLYLEGSDQHRGWFHSSLLESCGTR------GRAPY 620 (966)
T ss_pred CCCCHHHHEECCCHHHHHHHCCCCCCCCCC---CH--HHCCCCCCEEECCCCHHHHHHHHHHHHHHCCC------CCCCC
T ss_conf 878745507413114466515775320115---85--44589741686254188869999998742206------88774
Q ss_pred CHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 00001443100012255431245653023320254034445431233556775434110111000012344433332024
Q gi|254780933|r 577 HIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMK 656 (947)
Q Consensus 577 k~v~~hG~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r~f~nKLwNa~rf~~~~ 656 (947)
++|++||||+|++|+|||||+||||||.++|++||||++|||+++. ..++|+.|+++.+++.+++++||||++||+.++
T Consensus 621 k~v~~hG~VlDe~G~KMSKS~GNvvdP~~ii~~yGADalRl~~as~-~~~~d~~~~~~~l~~~~~~~~ki~Nt~rf~l~n 699 (966)
T PRK13804 621 KAVLTHGFTLDEKGEKMSKSLGNVVDPQDVIKQSGADILRLWVASV-DYQDDQRIGKEILKTNAETYRKLRNTLRWMLGT 699 (966)
T ss_pred CCEEECCEEECCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5103411689889888878788989989999872921888999847-754463456899999999999999999999986
Q ss_pred CCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC--CHHHHH
Q ss_conf 4457767-6774333155567799999999888998753100102457776531001368898647653056--714443
Q gi|254780933|r 657 NARHSVS-FVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQK--DSELVS 733 (947)
Q Consensus 657 ~~~~~~~-~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~--~~~~~~ 733 (947)
...++.. ..+.+.+..+|||||++|+++++.|+++|++|+|+.|++.|++|+|++||+||||++|+|+|++ ++..++
T Consensus 700 l~~f~~~~~~~~~~l~~~D~wil~~l~~~~~~v~~~~~~Y~f~~a~~~l~~F~~~dLs~~Yle~~Kdrly~~~~~~~~rr 779 (966)
T PRK13804 700 LAHFDPGEAVAYADLPELERLMLHRLNELDATVRKAYEAFDFKTIYKALVNFMTVDLSAFYFDIRKDALYCDAPSSLRRK 779 (966)
T ss_pred HCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 42798323489223528789999999999999999851135999999999999987879999884375405799839999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC--CCCHHHHHHHHHHHHH---HH-HHH
Q ss_conf 21000145676403456774489999999743566676756536635787877--4778989999999999---99-999
Q gi|254780933|r 734 ETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLI--IDDSESIEEVNWIIDL---IS-KVR 807 (947)
Q Consensus 734 ~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~--~~d~~~~~~~~~~~~i---i~-~iR 807 (947)
+++++|+++|.+++++||||+||+||||||.+.+. .++|||++.||+.. ..|..+.+.++.++++ |. .+.
T Consensus 780 saq~~L~~il~~l~~llAPi~Pf~aEEiw~~~~~~----~~~Sv~l~~~p~~~~~~~d~~l~~~w~~l~~lr~~V~~~lE 855 (966)
T PRK13804 780 AALTVIYEIFDRLTKWLAPILPFTTEEAWLYRYPE----EEVSVHLEQFPETPAFWRDDALAEKWRKFRAVRRVVTGALE 855 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999767289999999725578----99876711489997210697999999999999999999999
Q ss_pred HHHHHCCCCCCCEEEEEEECCCHHHHHHHHH
Q ss_conf 8889808997774659996499899999999
Q gi|254780933|r 808 SIRTEMNVPLKAVVPLVFANIDAHVRKRLEC 838 (947)
Q Consensus 808 ~~R~~~~i~~k~~i~i~~~~~~~~~~~~l~~ 838 (947)
.+|++..|+.+....+.+...+......+..
T Consensus 856 ~aR~~k~IgssLea~v~i~~~~~~~~~~l~~ 886 (966)
T PRK13804 856 IERAAKRIGSSLEAAPTVYISDPELLAALEG 886 (966)
T ss_pred HHHHCCCCCCCCEEEEEEEECCHHHHHHHCC
T ss_conf 9987699897330579998186899865250
No 10
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=1638.07 Aligned_cols=736 Identities=28% Similarity=0.478 Sum_probs=665.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 8767897898899999998769864453-454899808997284499998654378896779999987670898356778
Q gi|254780933|r 3 IDKTYDFAFIEQKSVEKWNSVDAFRIDV-APKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQP 81 (947)
Q Consensus 3 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~-~~~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~ 81 (947)
.+.++|++++|++++++|+++++|++.. ..++|+|+|+|+||||||||.+||||++|+++||||.||++|+||+|.+.|
T Consensus 14 fpmr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~p 93 (933)
T COG0060 14 FPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVP 93 (933)
T ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 77669923418899988887369999999973899808974799977898226566776666634333204588589889
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHH
Q ss_conf 81545408999999997674599877779899999999999999999999999808366427981158867999999999
Q gi|254780933|r 82 GTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAF 161 (947)
Q Consensus 82 G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F 161 (947)
||||||||||++|||++|+ ++.+++++|+++|+++|++++.++++.|+++|+|||+|+||+++|.|||+.|+++++|+|
T Consensus 94 GWDcHGLPIE~~vek~lg~-~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f 172 (933)
T COG0060 94 GWDCHGLPIELKVEKKLGI-GKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAF 172 (933)
T ss_pred CCCCCCCHHHHHHHHHHCC-CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEECCCHHHHHHHHHHH
T ss_conf 9767882288999998287-631143348999999999999999999999987636763268980327889999999999
Q ss_pred HHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 99998894331332022037767801486865414687669999653045300012455555442456887169998267
Q gi|254780933|r 162 VVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTR 241 (947)
Q Consensus 162 ~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Ttr 241 (947)
++++++||||||.+||+|||+|+|+||++||+|.++.++++||+|++.++ + ...+.+++|||||
T Consensus 173 ~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSIyV~F~v~~~------------~----~~~~~~lviWTTT 236 (933)
T COG0060 173 KELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVKDE------------G----LDENAYLVIWTTT 236 (933)
T ss_pred HHHHHCCCEECCCEEEEECCCCCCCHHHHHHCCCCCCCCEEEEEEEECCC------------C----CCCCCEEEEEECC
T ss_conf 99997797522770012268777600366640256689628999773357------------8----8777079999489
Q ss_pred CCHHCHHHHHHHHHCC------------------------------------HHHHHHCCCEEEECCCC----CCCCCCC
Q ss_conf 4010102444444100------------------------------------01231115423320248----6573210
Q gi|254780933|r 242 PETMFGDVAIAVHPDD------------------------------------YRYKELIGKYATLPIVG----RLIPIVS 281 (947)
Q Consensus 242 PeTl~g~~a~~v~P~d------------------------------------~~y~~l~G~~~~~Pl~~----~~ipi~~ 281 (947)
|||||+|.|+||||+= .++++|.|..+.|||.. +..||+.
T Consensus 237 PWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~vi~ 316 (933)
T COG0060 237 PWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVIL 316 (933)
T ss_pred CCCCHHCCEEEECCCCCEEEEEECCEEEEEHHHHHHHHHHHCCCCCEEEEEEEEHHHHCCCEEECCCCCCCCCCEEEEEE
T ss_conf 87731004367679851699997888999829989999987098420776775536628787648876545456046885
Q ss_pred CCCCCCCCCCCEEEECCCCCHHHHHHHHHCC-CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 0003421223203212477855656643046-531110167775213665444555434655465553100151233448
Q gi|254780933|r 282 DVYPDPEFGDGAVKVTPAHDFNDFEIAKRHG-LGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARS 360 (947)
Q Consensus 282 ~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~-l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~a~~ 360 (947)
++||+.+.|||+||+|||||++||.+|++++ ||++++++++|+++... +.|+|+.|++|++
T Consensus 317 gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~------------------~~~~G~~v~dAn~ 378 (933)
T COG0060 317 GDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEA------------------PKYEGLFVKDANK 378 (933)
T ss_pred CCEEECCCCCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC------------------HHHCCCEECCCCH
T ss_conf 2767227984105638989878999999829967646668885566654------------------3217824000789
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHCCCC
Q ss_conf 88998888764333210223222356665532444312221214542023334320024411214431135676410111
Q gi|254780933|r 361 KIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQP 440 (947)
Q Consensus 361 ~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~~~~D 440 (947)
.|+++|+++|.|++.++|.|||||||||++|||||+++||||+|+++++++++.+. +++|+|++.++||.+||+|++|
T Consensus 379 ~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~--~v~w~P~~~~~R~~~mve~r~D 456 (933)
T COG0060 379 KIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEIN--KVNWVPDWGKNRFGNMVENRPD 456 (933)
T ss_pred HHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEEEECCHHEEEHHHHHHHHHHHHH--CCEEECHHHHHHHHHHHCCCCC
T ss_conf 99999986795315335775798666789806985052033678889999999985--5568871578999999718986
Q ss_pred CCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCC-CCCC-CCCCCCCCCCCCCCEEECCCEECCEEECC
Q ss_conf 232123545631026983899887657623445420345567877-6555-41002568888310188241002202044
Q gi|254780933|r 441 WCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDN-DMTV-KVRKMIKDGNISDLLKRDEDVLDTWFSSA 518 (947)
Q Consensus 441 W~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~r~~DvlDtWfdSg 518 (947)
|||||||+||+|||||+|++|+.++.-..+.........-..+.. .... .......|+.++..++|++||||||||||
T Consensus 457 W~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSG 536 (933)
T COG0060 457 WCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSG 536 (933)
T ss_pred CEEECCCCCCCCEEEEEECCCCCEECCHHHHHHHHHHHHHHCCCHHHHCCCHHHHCCCCCCCCCEEEECCCCEEEEECCC
T ss_conf 43651666788533799889997423289999999877432172665156347645788887650596575468887378
Q ss_pred CCCCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCC
Q ss_conf 23332010111100012345553012455432101356777665301211337868520000144310001225543124
Q gi|254780933|r 519 LWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKG 598 (947)
Q Consensus 519 ~~p~~~l~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~G 598 (947)
|+|+++++ |.++..+..++ +||++||.||+||||++++++|++++ ++.||++|++||||+|++|+|||||+|
T Consensus 537 s~~~a~~~-~~~~~~~~~~~-aD~~lEGsDQ~RGWF~Ssl~~s~a~~------~~aPYk~vltHGfvlDe~GrKMSKSlG 608 (933)
T COG0060 537 STPYAVLH-PRENLKFPALF-ADFYLEGSDQTRGWFYSSLLTSTALF------GRAPYKNVLTHGFVLDEKGRKMSKSLG 608 (933)
T ss_pred CCCCCCCC-CCCCCCCCCCC-CCEEEEECCCCCHHHHHHHHHHHHHC------CCCHHHHHHHCCCEECCCCCCCCCCCC
T ss_conf 97111107-75444676555-75799706655226899999999972------885078776326178888887655578
Q ss_pred CCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCHHHHH
Q ss_conf 565302332025403444543123355677543411011100001234443333202444577676--774333155567
Q gi|254780933|r 599 NVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSVSF--VPQDVKWIVNKW 676 (947)
Q Consensus 599 Nvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~--~~~~~~~~~Drw 676 (947)
|+|+|.+++++||||+||||+++.. .++|+.||++.+++.++.+++|||++||+.+|+.++++.. .+.+....+|||
T Consensus 609 N~v~P~~V~~~yGADiLRLwv~ssd-~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drw 687 (933)
T COG0060 609 NVVDPQDVIDKYGADILRLWVASSD-YWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRW 687 (933)
T ss_pred CCCCHHHHHHHHCCHHEEEEEEECC-CHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHH
T ss_conf 8189899987627634046656158-230320278899999999999999999998850589942133514442321799
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 799999999888998753100102457776531001368898647653056--714443210001456764034567744
Q gi|254780933|r 677 IIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQK--DSELVSETLSCFSYVLYNVCKLLHPII 754 (947)
Q Consensus 677 ils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~--~~~~~~~~~~~l~~vl~~~l~ll~P~~ 754 (947)
||++++.+++.++++|++|+|+.+++++.+|+.++||+|||+++|+|+|.+ ++..+++++++|+++|.+++++||||+
T Consensus 688 il~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPil 767 (933)
T COG0060 688 ILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPIL 767 (933)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999998467999999999998856658898887887640479998899999999999999999971010
Q ss_pred HHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 899999997435666767565366357878774
Q gi|254780933|r 755 PFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLII 787 (947)
Q Consensus 755 PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~~ 787 (947)
||+||||||.|.+..+ .+||++++||+...
T Consensus 768 PftaEeiw~~l~~~~~---~eSVhl~~~p~~~~ 797 (933)
T COG0060 768 PFTAEEIWQNLPGERK---EESVHLEDWPEVDE 797 (933)
T ss_pred HHHHHHHHHHCCCCCC---CCEEEECCCCCCCC
T ss_conf 3659999974766788---75367035765543
No 11
>pfam00133 tRNA-synt_1 tRNA synthetases class I (I, L, M and V). Other tRNA synthetase sub-families are too dissimilar to be included.
Probab=100.00 E-value=0 Score=1341.20 Aligned_cols=570 Identities=45% Similarity=0.767 Sum_probs=524.5
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99999987698644534548998089972844999986543788967799999876708983567788154540899999
Q gi|254780933|r 15 KSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITV 94 (947)
Q Consensus 15 ~~~~~W~~~~~f~~~~~~~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~v 94 (947)
++|++|+++++|++..+.++++|+|++++||||+||.|||||++|||++|+++||+||+||||+|||||||||||||++|
T Consensus 1 eiq~~W~~~~~f~~~~~~~~~k~kf~i~~~pPY~nG~lH~GH~~~~t~~D~~aRy~rm~G~~Vl~p~GwD~~GlPiE~~v 80 (606)
T pfam00133 1 QIYQFWDEQGYFKKSLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDVLWVPGWDHHGLPTEQKV 80 (606)
T ss_pred CHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 96789875799057633479999589970898978850242668789999999999828997799884561439999999
Q ss_pred HHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf 99976745998777798999999999999999999999998083664279811588679999999999999889433133
Q gi|254780933|r 95 ESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDK 174 (947)
Q Consensus 95 ek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~ 174 (947)
||+++++.+.++.++|+++|++.|++|+.++++.|++||++||+|+||+|+|.||||.|++++||+|.+|+++||||||.
T Consensus 81 ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~DW~r~~~T~dp~y~~~~~w~F~~L~~~Gliyr~~ 160 (606)
T pfam00133 81 EKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFKRLGVSGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGK 160 (606)
T ss_pred HHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99742115998365799999999999999999999999998291264588725278125499999999999779817751
Q ss_pred CEEEECCCCCCCCCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHH
Q ss_conf 20220377678014868654146876699996530453000124555554424568871699982674010102444444
Q gi|254780933|r 175 RIVNWDPSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVH 254 (947)
Q Consensus 175 ~~v~w~p~~~T~ls~~Ev~~~~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~ 254 (947)
+||+|||.|+|+|||+||++++..+++++++|++.++ .+.+|+|||||||||+||++++||
T Consensus 161 ~~V~wcp~~~T~La~~Ev~~~d~~~~~~~v~f~l~~~-------------------~~~~l~i~TTrPeTl~g~~~l~v~ 221 (606)
T pfam00133 161 KPVNWSPALNTALSEAEVEYKDVKGPSIHVAFPLADG-------------------KGASLVIWTTTPWTLPGNTAVAVN 221 (606)
T ss_pred EEECCCCCCCEECCCCCEEECCCCCCEEEEECCCCCC-------------------CCCEEEEEECCCCCCCCCEEEEEC
T ss_conf 5501244254122444021000333035650445789-------------------876699994354200365368988
Q ss_pred HC-----------------------------------CHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 10-----------------------------------0012311154233202486573210000342122320321247
Q gi|254780933|r 255 PD-----------------------------------DYRYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPA 299 (947)
Q Consensus 255 P~-----------------------------------d~~y~~l~G~~~~~Pl~~~~ipi~~~~~V~~~~GTG~V~~~Pa 299 (947)
|+ +.++.+|+|+++.||++++++||+.++||++++|||+||+|||
T Consensus 222 p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~G~~~~~P~~~~~ipv~~~~~V~~~~GTG~V~~vPa 301 (606)
T pfam00133 222 PEFNYVKIRVTGEYYILAEALLKSLYKKKKEDGEILEDFRGKELIGKKYIHPFVNREIPIIADDYVDMEFGTGAVHIAPA 301 (606)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEECCCEEECCCCCCEEEEEECCCCCCCCCCCCEECCCC
T ss_conf 88765104438606789999999997403302433313345231277897887897578995464156668771333677
Q ss_pred CCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 78556566430465311101677752136654445554346554655531001512334488899888876433321022
Q gi|254780933|r 300 HDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYR 379 (947)
Q Consensus 300 h~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~a~~~ii~~L~~~g~l~~~~~~~ 379 (947)
||++||+++++|+||++++++++|.+... .++|+|+.+.+|++.|++.|+++|++++.+++.
T Consensus 302 h~~~D~~~~~k~~l~~~~~i~~~g~~~~~------------------~~~~~G~~v~~a~~~ii~~L~~~g~l~~~~~~~ 363 (606)
T pfam00133 302 HGEDDYEVGKRHNLEFINPVDDDGTYNEE------------------APEFQGLKRFKARKKIVELLTEKGLLLKIEPIE 363 (606)
T ss_pred CCHHHHHHHHHCCCCCEEEECCCCEECCC------------------CCCCCCCEEEECCHHHHHHHHHCCCEEEEEEEC
T ss_conf 77799999998399850244898846676------------------511158525602189999788689866532201
Q ss_pred CCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 32223566655324443122212145420233343200244112144311356764101112321235456310269838
Q gi|254780933|r 380 HIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSP 459 (947)
Q Consensus 380 h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~~~~DW~ISRqr~WG~pIPvw~~~ 459 (947)
|+||||||||+||++++++||||+++++++.++++++ +++|+|++.++++.+||+|++|||||||||||||||||+|+
T Consensus 364 ~~~p~~~R~~~~vi~~~~~QWFi~~~~~k~~~~~~~~--~~~~~P~~~~~~~~~~l~~l~DW~iSRQR~WGtPIPi~~~~ 441 (606)
T pfam00133 364 HSYPHCWRSGTPIIYRATPQWFVRMKNLAEAALKAVE--KVQFVPKWGEKRYGNWLENIQDWCISRQRWWGHPIPAWYSK 441 (606)
T ss_pred CCCCEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHH--HHHCCCHHHCCHHHEEECCCCCCEEEEECCCCCCCCEEECC
T ss_conf 0155554789479996027877755999999998644--33027501012033055256563575414678732269837
Q ss_pred CCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCEEECCCCCCCEECHHH-HHHCCCCCC
Q ss_conf 9988765762344542034556787765554100256888831018824100220204423332010111-100012345
Q gi|254780933|r 460 DGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPE-QTAELKTYY 538 (947)
Q Consensus 460 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtWfdSg~~p~~~l~~p~-~~~e~~~~~ 538 (947)
+|+.++...+.......... ...............++.|++.++|++||||||||||+|||++++||. ++++|++||
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~re~DtmDtwfdSg~~~~~~~~~p~~~~~~f~~~~ 519 (606)
T pfam00133 442 DTGEVYVRGSLKELVAGREE--EEGIEAWLHRDAKDLLGKGAGTLEQDEDVLDTWFSSGSWPFSTLGYPFTNTPEFKRFF 519 (606)
T ss_pred CCCCCCCCCHHHHHHHHHHC--CCCCCCCCCCCHHHHCCCCCCCEEECCEEEECEECCCCCHHHHHCCCHHCHHHHHCCC
T ss_conf 89831675024555544304--6675310121246553578875156776120211177568988478512769895388
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHH
Q ss_conf 55301245543210135677766530121133786852000014431000122554312456530233202540344454
Q gi|254780933|r 539 PTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFY 618 (947)
Q Consensus 539 P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~ 618 (947)
|+|++++|+||+||||+++++.+++++ +.+||++|++||||+|++|+|||||+||+|+|.++|++||||++|+|
T Consensus 520 PvD~~i~G~D~~r~w~~~~~~~~~~~~------~~~Pfk~l~~~G~vld~~G~KMSKSkGNvv~p~~~i~~yGaD~~Rl~ 593 (606)
T pfam00133 520 PADMLLEGSDQTRGWFYRMIVLGTALT------GSAPYKNVLVHGLVRDEQGRKMSKSLGNVIDPLDVIDKYGADALRLW 593 (606)
T ss_pred CCCEEECCHHHHHHHHHHHHHCCCCCC------CCCCCCEEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHH
T ss_conf 984897767688489999997000027------99765458876618999887888888997898999987492999999
Q ss_pred HHCCCCCCCCCCCC
Q ss_conf 31233556775434
Q gi|254780933|r 619 FSIMAVQGRDINLD 632 (947)
Q Consensus 619 l~~~~~~~~D~~fs 632 (947)
+++ +++++|++||
T Consensus 594 ~~~-a~~~~D~~~S 606 (606)
T pfam00133 594 LAS-SDYGRDINFS 606 (606)
T ss_pred HHC-CCCHHCCCCC
T ss_conf 975-9922046559
No 12
>KOG0434 consensus
Probab=100.00 E-value=0 Score=1317.10 Aligned_cols=840 Identities=24% Similarity=0.407 Sum_probs=727.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 88767897898899999998769864453454899808997284499998654378896779999987670898356778
Q gi|254780933|r 2 MIDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQP 81 (947)
Q Consensus 2 ~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~ 81 (947)
+.++++||+.-|++++++|.+.+.|+.+....+++|+|+|+||||+|+|.||.||.+.-||||++.||..|+||+|-+.|
T Consensus 3 ~~~~n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRF 82 (1070)
T KOG0434 3 EVPENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRF 82 (1070)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 66545787445889999998753899999860799842613699655689862144544687777777430463102201
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHH
Q ss_conf 81545408999999997674599877779899999999999999999999999808366427981158867999999999
Q gi|254780933|r 82 GTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAF 161 (947)
Q Consensus 82 G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F 161 (947)
||||||||+|.++.|+||+.+..+...||+++++++|+..+..+...|...+.|+|.|+|+++.|.||+|.|+++|||+|
T Consensus 83 GWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvF 162 (1070)
T KOG0434 83 GWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVF 162 (1070)
T ss_pred CCCCCCCCCCEEECHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEECHHHHHHHHHHH
T ss_conf 66568885010000220888789999970776758988999988788999998631404326885121678999999999
Q ss_pred HHHHHCCCEEECCCEEEECCCCCCCCCHHHHH--CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 99998894331332022037767801486865--4146876699996530453000124555554424568871699982
Q gi|254780933|r 162 VVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVI--QKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVST 239 (947)
Q Consensus 162 ~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~--~~~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~T 239 (947)
++||++||+|||.++.+||+.|.|+|||-|-. |+++.+|+++|.|++++. .+..+++||
T Consensus 163 keL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~DPav~v~F~li~~-------------------~~~slvAWT 223 (1070)
T KOG0434 163 KELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPAVFVAFPLIGD-------------------PNVSLVAWT 223 (1070)
T ss_pred HHHHHCCCEECCEEEECCCCCCCCCCCCHHCCCCCCCCCCCEEEEEEECCCC-------------------CCEEEEEEE
T ss_conf 9998667553113631033335885500000367656899707997312688-------------------611279874
Q ss_pred CCCCHHCHHHHHHHHHCCH--------------------------------------HHHHHCCCEEEECC--C-----C
Q ss_conf 6740101024444441000--------------------------------------12311154233202--4-----8
Q gi|254780933|r 240 TRPETMFGDVAIAVHPDDY--------------------------------------RYKELIGKYATLPI--V-----G 274 (947)
Q Consensus 240 trPeTl~g~~a~~v~P~d~--------------------------------------~y~~l~G~~~~~Pl--~-----~ 274 (947)
|||||||+|.|++|||+=. .++.|+|+.+.-++ + .
T Consensus 224 TTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~ 303 (1070)
T KOG0434 224 TTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEE 303 (1070)
T ss_pred CCCCCCCCCEEEEECCCEEEEEEEECCCCEEEEEEHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 58755766604787687279999843677589972987777735864320799986265313586457665689987315
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCC-----CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6573210000342122320321247785565664304653-----11101677752136654445554346554655531
Q gi|254780933|r 275 RLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLG-----FINILTPEAKIFLSENESFLENIVLSDEARNIFSE 349 (947)
Q Consensus 275 ~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (947)
.-..+++++||+.+.|||+||+|||+|+.||.++..+|+- ++.++++.|++ +.....
T Consensus 304 ~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~------------------Tsev~d 365 (1070)
T KOG0434 304 GAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLF------------------TSEVTD 365 (1070)
T ss_pred CCEEEECCCCEECCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC------------------CCCCCC
T ss_conf 73699615727427886136507765705489999739513778788861667763------------------100542
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCC-C
Q ss_conf 001512334488899888876433321022322235666553244431222121454202333432002441121443-1
Q gi|254780933|r 350 FEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSW-D 428 (947)
Q Consensus 350 ~~G~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~-~ 428 (947)
|+|..|++|++.||+.|++.|.|+....+.|||||||||+||++|++.+.||++++.+.++++++ |++++|+|... .
T Consensus 366 faG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~n--n~~t~WVP~~ike 443 (1070)
T KOG0434 366 FAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRN--NMKTHWVPQNIKE 443 (1070)
T ss_pred CCCEEECCCHHHHHHHHHHCCCEEEEEEEEECCCCEECCCCHHHHHHCCHHHHHHHHHHHHHHHC--CCCCCCCCHHHHH
T ss_conf 25524221439999999852746655656644673355897078763427651199779999851--5544347705567
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHH-----HCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1356764101112321235456310269838998876576234454-----20345567877655541002568888310
Q gi|254780933|r 429 KSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALR-----SAIDYYLSQDNDMTVKVRKMIKDGNISDL 503 (947)
Q Consensus 429 ~~~~~wl~~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (947)
+||.|||+|+|||.|||+||||||||+|..+|.+.+|...+-..+. ...|.+....++..++... ..+.
T Consensus 444 KRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~kItDlHRe~iD~itIps~~------gkg~ 517 (1070)
T KOG0434 444 KRFANWLKNARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKITDLHRESIDHITIPSKK------GKGV 517 (1070)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEECCHHHHHHHCCCCCHHHHHHHCCCEECCCCC------CCCC
T ss_conf 7888887530312110035558885547736873579953288898840973114445414756504678------8762
Q ss_pred EEECCCEECCEEECCCCCCCEECHHHHHH-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCC
Q ss_conf 18824100220204423332010111100-01234555301245543210135677766530121133786852000014
Q gi|254780933|r 504 LKRDEDVLDTWFSSALWPFASLGWPEQTA-ELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMH 582 (947)
Q Consensus 504 ~~r~~DvlDtWfdSg~~p~~~l~~p~~~~-e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~h 582 (947)
++|+.+||||||.|||||||+.|||++|+ +|+..||+||+.||.||+|||||++++++++|| +++|||+|+++
T Consensus 518 l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~fPadFIaEGlDQTRGWFYTL~VlsT~LF------~kppfkNvIvn 591 (1070)
T KOG0434 518 LHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPADFIAEGLDQTRGWFYTLLVLSTALF------GKPPFKNVIVN 591 (1070)
T ss_pred EEHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHC------CCCCCHHEEEE
T ss_conf 121666765643158876202118853367776449667665132002204557999999871------79852221670
Q ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 43100012255431245653023320254034445431233-556775434110111-0000123444333320244457
Q gi|254780933|r 583 ALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMA-VQGRDINLDLERIAG-YRNFITKFWNAIRFSKMKNARH 660 (947)
Q Consensus 583 G~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~-~~~~D~~fs~~~i~~-~r~f~nKLwNa~rf~~~~~~~~ 660 (947)
|+|+.++|+|||||+.|+.||..+|++|||||+|+||..+. ..++.+.|.++++.. ....+...||++||+..|....
T Consensus 592 GlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~ 671 (1070)
T KOG0434 592 GLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALL 671 (1070)
T ss_pred EEEEECCCHHHHHHHHCCCCHHHHHHHHCCHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 16881210777665315988789887626202256651584100433444211189998766125567789999888875
Q ss_pred CC----CC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCH-HHH
Q ss_conf 76----76---77433315556779999999988899875310010245777653100136889864765305671-444
Q gi|254780933|r 661 SV----SF---VPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDS-ELV 732 (947)
Q Consensus 661 ~~----~~---~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~~~-~~~ 732 (947)
.. .. ....+.+.+||||++.+++++.-+++.|++||+..++-.+..|+ ++++||||++.+.|+.+++. ...
T Consensus 672 ~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfi-D~LTNwYiR~nRrrlkGe~G~~d~ 750 (1070)
T KOG0434 672 KKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFI-DELTNWYIRFNRRRLKGENGEHDC 750 (1070)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHH-HHHHHHHEEHHHHHHCCCCCHHHH
T ss_conf 0245876663333466205789999999999999999887503241588899999-875466301205552577761788
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCC----CCCCCEEEECCCCCCC--CCCHHHHHHHHHHHHHHHHH
Q ss_conf 32100014567640345677448999999974356667----6756536635787877--47789899999999999999
Q gi|254780933|r 733 SETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDD----MDKQGLLCHAQWPSLI--IDDSESIEEVNWIIDLISKV 806 (947)
Q Consensus 733 ~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~----~~~~~si~~~~wP~~~--~~d~~~~~~~~~~~~ii~~i 806 (947)
..++.+|..+|-+++|+|+||+||+||.|||+|...-+ .....|+|...+|.+. .+|+..+..++.++.+|..+
T Consensus 751 ~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~P~~~~~~~de~ve~~v~~m~siIdl~ 830 (1070)
T KOG0434 751 HNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPIDKNEKSERSVHFLSYPTPKEELIDETVERRVERMQSIIDLA 830 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999758854888999998873078533477654267763587325425606877999999999999
Q ss_pred HHHHHHCCCCCCCEEE-EEEECCCHHHHHHHHHHHHHH-HHHCCCCEEEECCCCCCEEEEEECCEEEEEECCCCCCHHHH
Q ss_conf 9888980899777465-999649989999999989999-98324615871148887379992891999982445499999
Q gi|254780933|r 807 RSIRTEMNVPLKAVVP-LVFANIDAHVRKRLECHKCII-DRLSSGNIIFADCPPDRSIQIILDGMVLFLAIGDFVDFVKE 884 (947)
Q Consensus 807 R~~R~~~~i~~k~~i~-i~~~~~~~~~~~~l~~~~~ii-~~L~~~~i~~~~~~~~~~~~~v~~~~~~~i~l~~~iD~~~e 884 (947)
|++|...+|++|.++. +++...+++..+-++..+..| .+||+.+++......+- .+.++-.-|.-..
T Consensus 831 R~iRern~islKtPLK~~ivi~~d~~~ledik~l~~yI~eElNVr~v~~~~d~~ky-----------g~~lkaepd~~vL 899 (1070)
T KOG0434 831 RNIRERNTISLKTPLKELIVIHSDEEYLEDIKSLERYILEELNVREVVFTSDEEKY-----------GVVLKAEPDFPVL 899 (1070)
T ss_pred HHHHHCCCCCCCCCHHHEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHC-----------CEEEEECCCCHHH
T ss_conf 97766058754475033378748789987799999999986052056641562121-----------4589845881777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99889999999999999986
Q gi|254780933|r 885 RSRLKKSLEKVLDELSSIKK 904 (947)
Q Consensus 885 ~~rl~K~l~~l~~~i~~~~~ 904 (947)
-+||.|..++..+.+..+.+
T Consensus 900 Gkklk~~~kkv~~~l~~~t~ 919 (1070)
T KOG0434 900 GKKLKKDMKKVKKALKQVTS 919 (1070)
T ss_pred HHHHHHHHHHHHHHHHHCCH
T ss_conf 67878889999998762189
No 13
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=1297.08 Aligned_cols=771 Identities=23% Similarity=0.346 Sum_probs=603.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHH------HCC---HHHHHHHHHHHH
Q ss_conf 65437889677999998767089835677881545408999999997674599877------779---899999999999
Q gi|254780933|r 52 LHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTRE------DIG---RDAFIEKVWEWK 122 (947)
Q Consensus 52 lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~------~~g---~~~f~~~~~~~~ 122 (947)
|||||++|||++|+++||+||+||+|+||||||||||||+..+|+ +....+..++ .++ +++|.+ ++.|+
T Consensus 1 LH~GH~~~~ti~DiiaRykrM~G~~Vl~p~GwD~~GlPi~~~ae~-~~~~~~~~~~~~~~~~~~~~~~i~k~~~-~~~~~ 78 (888)
T PRK12300 1 LHIGHGRTYTIGDIYARYKRMKGYNVLFPMGFHVTGTPILGIAER-IAEGDPETIDIYRNLYGIPEEEIEKFKD-PEYIV 78 (888)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH-HHHCCHHHHHHHHHHHCCCHHHHHHHHH-HHHHH
T ss_conf 940554787999999999980799779999888899538999999-8604446899987751366888887500-99999
Q ss_pred HHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCCCCCCEE
Q ss_conf 99999999999980836642798115886799999999999998894331332022037767801486865414687669
Q gi|254780933|r 123 KESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEVDGNLW 202 (947)
Q Consensus 123 ~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~~~~~~~ 202 (947)
+++.+.|++||+|||+|+||+|+|+||||.|+++|||+|.+||++||||||.+||||||.|+|+||||||.+++..+...
T Consensus 79 ~~~~~~~~~q~~rlG~s~DW~re~~T~dp~y~~~v~w~F~kL~ekGliyrg~~~V~WcP~~~T~la~~ev~~~~~~~~~~ 158 (888)
T PRK12300 79 EYFSKEAKEAMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVGWCPKDENPVGDHDTKDGEEPTIGE 158 (888)
T ss_pred HHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCCCCCCCHHHCCCCCCEEE
T ss_conf 99999999999983860636998664888799999999999997799497877867259878482220555087755168
Q ss_pred E--EEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCH----------------------
Q ss_conf 9--9965304530001245555544245688716999826740101024444441000----------------------
Q gi|254780933|r 203 Y--VRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDY---------------------- 258 (947)
Q Consensus 203 ~--ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~---------------------- 258 (947)
| ++|+ ..+.+++||||||||||||||+||||++.
T Consensus 159 ~~~ikf~----------------------~~~~~l~v~TTrPeTl~g~ta~~v~Pd~~Yv~~~~~~e~~i~~~~~~~~l~ 216 (888)
T PRK12300 159 YTLIKFE----------------------GDDLILPAATLRPETVFGVTNLWVNPDAEYVVAEVDGEKWIVSKEAARKLS 216 (888)
T ss_pred EEEEEEC----------------------CCCEEEEEEECCHHHHHHHHEEEECCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999971----------------------798279997268025430000377776323456427720089999999986
Q ss_pred ------------HHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCC---CEECCCC
Q ss_conf ------------1231115423320248657321000034212232032124778556566430465311---1016777
Q gi|254780933|r 259 ------------RYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFI---NILTPEA 323 (947)
Q Consensus 259 ------------~y~~l~G~~~~~Pl~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~---~~~~~~g 323 (947)
++++|+|+++.||++|+++||++++||++++|||+||+|||||++||.++++++++.+ +++..+|
T Consensus 217 ~~~~~~~~~~~~~g~~l~G~~~~~P~~~~~ipI~~ad~V~~~~GTG~V~~vPaHd~~Dy~~~~~~~~~~~~~i~ii~v~~ 296 (888)
T PRK12300 217 FQDREVEIIEEIKGSELIGKKVKNPVTGKEVPILPAKFVDPDNGTGVVMSVPAHAPYDYVALRDLDVEEIELIPLIKVEG 296 (888)
T ss_pred HCCCCEEEEEEECCCEECCEEEECCCCCCEEEEEECCEECCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEECC
T ss_conf 22211367532026330350898678898735986140747889772896578987789999860724246777232056
Q ss_pred CCCCCC------------CCCCCCCC--------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 521366------------54445554--------3465546555310015123344888998888764333210223222
Q gi|254780933|r 324 KIFLSE------------NESFLENI--------VLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVP 383 (947)
Q Consensus 324 ~~~~~~------------~~~~~~~~--------~~~~~~~~~~~~~~G~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p 383 (947)
.....+ +...+... ...+......|+|.|+.|.+||++|+++|+++|++.....+.|+++
T Consensus 297 ~g~~p~~~~~~~~~i~~~~d~~l~~a~~~~y~~e~~~G~l~~~~~~~~G~~v~eA~~~i~~~L~~~g~~~~~y~~~~~~v 376 (888)
T PRK12300 297 YGEFPAKEIVEKMGIKSQKDPELEEATKELYKAEFHKGVLREDTGEYAGKPVREAREKITEDLIESGIAEIMYEFSEKPV 376 (888)
T ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCHHCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCC
T ss_conf 67752777777507766442347777665422231175341565110697999999999999997799740303577886
Q ss_pred CCCCCCCCEEEE-EEHHHEECCC--CCHHHHHHHHHCCCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 356665532444-3122212145--4202333432002441121443113567641011123212354563102698389
Q gi|254780933|r 384 HCERSGVTIEPC-ITEQWYLDAK--VLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPD 460 (947)
Q Consensus 384 ~c~R~~~~i~~~-~~~QWfi~~~--~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~~~~DW~ISRqr~WG~pIPvw~~~~ 460 (947)
+| |||+|++++ +++||||++. .++++++++++ +++|+|++.+++|.+||++++||||||||||||||| | +
T Consensus 377 ~~-R~g~~~v~~~~~dQWFi~~~~~~~k~~~~~~~~--~i~~~P~~~~~~~~~~l~~l~DW~iSRqr~wGtpiP-w---d 449 (888)
T PRK12300 377 YC-RCGTECVVKVVKDQWFIDYSNPEWKELAHKCLD--RMRIIPEEARAEFENKIDWLKDRACARRRGLGTPLP-W---D 449 (888)
T ss_pred CC-CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHC--CCEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-C---C
T ss_conf 78-999867634168764104787677899998761--665657213455787761468865456667697887-0---4
Q ss_pred CCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCEEECCCCC---CCEECHHH-----HHH
Q ss_conf 9887657623445420345567877655541002568888310188241002202044233---32010111-----100
Q gi|254780933|r 461 GKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWP---FASLGWPE-----QTA 532 (947)
Q Consensus 461 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtWfdSg~~p---~~~l~~p~-----~~~ 532 (947)
+.+++++..+++++++.............. ... ..++++|.||-+...| +...++|. .++
T Consensus 450 ~~~~iesl~dstiy~~~yt~~~~~~~~~~~----------~~~--l~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (888)
T PRK12300 450 ERWVIESLSDSTIYMAYYTIAKKIRQYGLD----------PEQ--LTPEFFDYVFLGKGDPEEISKKTGIPKEILEEMRE 517 (888)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHCCCCC----------HHH--CCCHHCCEEECCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 882342277764001024687876334899----------567--58101304314899766666651998889998688
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCH
Q ss_conf 01234555301245543210135677766530121133786852000014431000122554312456530233202540
Q gi|254780933|r 533 ELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGA 612 (947)
Q Consensus 533 e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvidp~e~i~~yGa 612 (947)
+|++|||+|++++|+|++++|+.++++.+.+++... ..| ++|++||||++ +|+|||||+||+|||.++|++|||
T Consensus 518 ~f~~wyP~D~~~~G~D~i~~hl~f~~~~~~aif~~~----~~p-k~v~~~G~Vl~-eG~KMSKSkGNvV~P~eiI~~YGA 591 (888)
T PRK12300 518 EFEYWYPLDWRHSGKDLIPNHLTFFIFNHVAIFPEE----KWP-RGIVVNGFVLL-EGKKMSKSKGNVLPLREAIEEYGA 591 (888)
T ss_pred HHCEECCCCCCCCCEEHHHHHHHHHHHHHHHHHCCC----CCC-CEEEEEEEEEC-CCEECCCCCCCCCCHHHHHHHCCC
T ss_conf 646426760143531033567999998868871777----788-75798328945-987703034898998999976196
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34445431233556775434110111000012344433332024445776767743331555677999999998889987
Q gi|254780933|r 613 DALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGM 692 (947)
Q Consensus 613 DalR~~l~~~~~~~~D~~fs~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~ 692 (947)
|++|||+++++++++|++|+++.++++++|++++||.++...... .......+||||+++++++++.|+++|
T Consensus 592 DalRl~l~~~a~~~~d~~~~~~~v~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~D~wils~l~~~i~~v~~~~ 663 (888)
T PRK12300 592 DVVRLYLASTAELSQDADFREKEAESIRRQLERFYELAVELAEEE--------SEEELRFIDKWLLSRLYSYIKEVTEAM 663 (888)
T ss_pred CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--------CCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 299999997188556864579999999999999999999763267--------776776678999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 53100102457776531001368898647653056714443210001456764034567744899999997435666767
Q gi|254780933|r 693 ENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMD 772 (947)
Q Consensus 693 e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~~~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~~~ 772 (947)
++|+|++|++.++.|++++ +|||+++++. ..+.+|+.+|+++++||||||||+||||||.|++
T Consensus 664 e~~~f~~a~~~~~~~~~~~-~~~Y~~~~~~-----------~~~~~l~~~l~~~~~LLaP~~PhiaEElW~~Lg~----- 726 (888)
T PRK12300 664 EEFQTRKAIQEIFYNLLND-LRWYLRRGGE-----------PNNKVLREVIEIWIRLLAPFTPHLAEEIWEKLGG----- 726 (888)
T ss_pred HHCCHHHHHHHHHHHHHHH-HHHHHHHHCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_conf 8445999999999999999-9999987371-----------8899999999999999604104889999996799-----
Q ss_pred CCCEEEECCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 565366357878774--778989999999999999998889808997774659996499899999999899999832461
Q gi|254780933|r 773 KQGLLCHAQWPSLII--DDSESIEEVNWIIDLISKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLECHKCIIDRLSSGN 850 (947)
Q Consensus 773 ~~~si~~~~wP~~~~--~d~~~~~~~~~~~~ii~~iR~~R~~~~i~~k~~i~i~~~~~~~~~~~~l~~~~~ii~~L~~~~ 850 (947)
++||++++||++.. +|+.++.+++.++++|+.+|++|+..+++|+. +.+++ .+......++.........+.
T Consensus 727 -~~sV~~a~wP~~de~~id~~~e~~~~~~~~~i~~ir~~~~~~~~~p~~-~~i~v--a~~wk~~~~~~~~~~~~~~~~-- 800 (888)
T PRK12300 727 -EGFVSLAPWPEPDESKIDEEAELAEEYVKNLIEDIKEIIKVAKINPKR-VYIYV--APDWKWEVLELAAEVKKDVGA-- 800 (888)
T ss_pred -CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE-EEEEE--CCHHHHHHHHHHHHHHHHHHH--
T ss_conf -983770799999934279899999999999999999999861999866-99997--969999999999998877766--
Q ss_pred EEEECCCCCCEEEEEECCEEEEEECCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHH
Q ss_conf 587114888737999289199998244549--999999889999999999999986607923678588899999999999
Q gi|254780933|r 851 IIFADCPPDRSIQIILDGMVLFLAIGDFVD--FVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFS 928 (947)
Q Consensus 851 i~~~~~~~~~~~~~v~~~~~~~i~l~~~iD--~~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~ 928 (947)
+ ++++++ ...+.+++.|++.++.+.+....+++....|-+. +|.+....-++
T Consensus 801 ~-----------------------~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~l~~~~~~~~ 854 (888)
T PRK12300 801 A-----------------------IPELMKDKVLDELKKLGKEVAKLIQKIIEERKLLVVKGIDEE---EVLRDAKDFLE 854 (888)
T ss_pred H-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHH
T ss_conf 6-----------------------899998601177999999999999998877765126898889---99999999999
No 14
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=0 Score=1288.45 Aligned_cols=720 Identities=27% Similarity=0.421 Sum_probs=568.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 87678978988999999987698644534548998089972844999986543788967799999876708983567788
Q gi|254780933|r 3 IDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPG 82 (947)
Q Consensus 3 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G 82 (947)
|.++|||++||++||++|+++++|++.. .++++|+++++|||+||.|||||++|||++|+++||+||+||+|+||||
T Consensus 1 m~~~Y~~~~iE~kw~~~W~~~~~f~~~~---~~~~k~yvld~~PYpsG~lH~GH~~~~ti~Dii~Rykrm~G~~Vl~p~G 77 (822)
T PRK00390 1 MQMRYNPKEIEKKWQKYWEENKTFKVTE---DSKPKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMG 77 (822)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCC---CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9887886999999999998569824897---7899807937799989861132556478999999998718996389897
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHH
Q ss_conf 15454089999999976745998777798999999999999999999999998083664279811588679999999999
Q gi|254780933|r 83 TDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFV 162 (947)
Q Consensus 83 ~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~ 162 (947)
|||||||+|+++.| .+.+ +++|+.++++.|++||+|||+|+||+|+|.||||.|++|+||+|.
T Consensus 78 wD~~GLPaE~~aik-----~~~~------------p~~~t~~nI~~~k~q~k~lG~~~DW~r~~~T~dp~y~~~~qw~F~ 140 (822)
T PRK00390 78 WDAFGLPAENAAIK-----TGTH------------PAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWLFL 140 (822)
T ss_pred CCCCCCHHHHHHHH-----HCCC------------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 36688689899999-----4998------------899999999999999998395430689877578779999999999
Q ss_pred HHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCC----------CCCCEEEEEE-----EEECCCCCCCCCC--------
Q ss_conf 9998894331332022037767801486865414----------6876699996-----5304530001245--------
Q gi|254780933|r 163 VLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKE----------VDGNLWYVRY-----PLVEGVTYRHPIK-------- 219 (947)
Q Consensus 163 ~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~----------~~~~~~~ik~-----~l~~~~~~~~~~~-------- 219 (947)
+||++||||||.+||+|||.|+|+|||+||+++. .+-+.||+|. .|.++......+.
T Consensus 141 ~l~ekGliyr~~~~V~Wcp~~~T~LAn~eV~~G~~~r~~~~V~~k~~~qw~~kit~Ya~~Ll~~l~~l~~wP~~vk~mQ~ 220 (822)
T PRK00390 141 KLYEKGLAYRKESPVNWCPVDQTVLANEQVIDGRSWRSGAPVEKKELPQWFLKITDYADELLDDLDELDGWPEKVKTMQR 220 (822)
T ss_pred HHHHCCCEEECCEEEECCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCEEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHC
T ss_conf 99988997952324200797687765044414764346870466304403552007588875021002466077766530
Q ss_pred ----CCCC--CCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHH--------------------------------
Q ss_conf ----5555--44245688716999826740101024444441000123--------------------------------
Q gi|254780933|r 220 ----FDDD--AKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYK-------------------------------- 261 (947)
Q Consensus 220 ----~~~~--~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~-------------------------------- 261 (947)
.+.. ........+..++|||||||||||++++||+|+.....
T Consensus 221 nWIG~s~g~~v~F~~~~~~~~l~v~TTrP~Tl~G~t~~~v~p~h~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ek~ 300 (822)
T PRK00390 221 NWIGRSEGAEVTFKVKGSDEKLEVFTTRPDTLFGATYLVLAPEHPLAEKLAEQNPAVAAFIEECKNKSDLERTLATKEKT 300 (822)
T ss_pred CCCCCEEEEEEEEECCCCCCEEEEEECCHHHHCCCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHCEEE
T ss_conf 43342000798633169985599996883352286279993797899999844899999999987124366655315010
Q ss_pred -HHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf -1115423320248657321000034212232032124778556566430465311101677752136654445554346
Q gi|254780933|r 262 -ELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLS 340 (947)
Q Consensus 262 -~l~G~~~~~Pl~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~ 340 (947)
.+.|.+++||++++++||+.++||++++|||+||+|||||++||+++++||||++.+++.+..... +......
T Consensus 301 G~~~G~~~~~P~~~~~iPI~~ad~V~~~~GTG~V~~~PaHd~~D~~~a~k~~Lpi~~Vi~~~~~~~~-----~~~~G~l- 374 (822)
T PRK00390 301 GVFTGLYAIHPLTGEKIPVWIANYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKQVIGGDVSEEA-----YTEDGVL- 374 (822)
T ss_pred CEECCCEEECCCCCCEEEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEECCCCCCCC-----CCCCEEE-
T ss_conf 1005858977788965569962525245787726756878878999999829982476378876654-----5577148-
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCC
Q ss_conf 55465553100151233448889988887643332102232223566655324443122212145420233343200244
Q gi|254780933|r 341 DEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCL 420 (947)
Q Consensus 341 ~~~~~~~~~~~G~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i 420 (947)
-..++|+|+.+.+|+++|+++|+++|+... .+
T Consensus 375 ----ins~~~~Gl~~~eA~~~ii~~L~~~g~g~~--------------------------------------------~i 406 (822)
T PRK00390 375 ----INSGELDGLDSEEAKEAIIAWLEEKGLGKR--------------------------------------------KV 406 (822)
T ss_pred ----ECCHHCCCCCHHHHHHHHHHHHHHCCCCCC--------------------------------------------CC
T ss_conf ----763421786468899999999997799866--------------------------------------------34
Q ss_pred CEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCC---CCCCCCCCCC
Q ss_conf 1121443113567641011123212354563102698389988765762344542034556787765---5541002568
Q gi|254780933|r 421 SFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDM---TVKVRKMIKD 497 (947)
Q Consensus 421 ~~~P~~~~~~~~~wl~~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 497 (947)
+| .+||||||||||||+|||||||++|+.+....+++++..+.+......+.. .........|
T Consensus 407 ~y--------------rLRDW~iSRQRyWG~PIPi~~c~~~~~v~v~e~~Lpv~LPe~~~~~~~g~~PL~~~~~w~~~~c 472 (822)
T PRK00390 407 NY--------------RLRDWGISRQRYWGEPIPIIHCEDCGVVPVPEDDLPVVLPEDVVPDGTGESPLAKHPEWVNVTC 472 (822)
T ss_pred CE--------------ECCCCEEECCCCCCCCEEEEEECCCCEEEEEHHHCCCCCHHHEECCCCCCCHHHHCCCCEEEEC
T ss_conf 10--------------1266322112025784038995789778710787553460013006889994684700175214
Q ss_pred CCCCCCEEECCCEECCEEECCCCCCCEECHHHH------HHCCCCCCCCCCCCCCCC--CC-----CCHHHHHHHHHHHC
Q ss_conf 888310188241002202044233320101111------000123455530124554--32-----10135677766530
Q gi|254780933|r 498 GNISDLLKRDEDVLDTWFSSALWPFASLGWPEQ------TAELKTYYPTSVLVTGFD--IL-----FFWVARMMMMGLYF 564 (947)
Q Consensus 498 ~~~~~~~~r~~DvlDtWfdSg~~p~~~l~~p~~------~~e~~~~~P~d~~~~G~D--i~-----r~W~~~~l~~~~~l 564 (947)
+.|+..++||+||||||||| +|||+....|.+ .+.+++|+|+|++++|.+ ++ |||...|..++
T Consensus 473 ~~~g~~~~RetDt~DtW~dS-sWY~~ry~~p~~~~~~~d~~~~~yw~PvD~YigG~EHailHLlYsRF~~~~l~dlg--- 548 (822)
T PRK00390 473 PKCGKPARRETDTMDTFVGS-SWYYLRYTDPHNDEAMFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFHKVLRDLG--- 548 (822)
T ss_pred CCCCCCCEECCCCCCEEECC-CCEEEECCCCCCCCCCCCHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCC---
T ss_conf 77787214535310201135-44000015776444667977886028961401644566778888889999998716---
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCH------------------------HHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHH
Q ss_conf 121133786852000014431000------------------------12255431245653023320254034445431
Q gi|254780933|r 565 MKDAEGKGIEPFHIVYMHALVRDK------------------------NGQKMSKSKGNVVDPIDVIDQYGADALRFYFS 620 (947)
Q Consensus 565 ~~~~~~~~~~Pfk~v~~hG~vld~------------------------~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~ 620 (947)
.....+||+++++||||++. .|+|||||+||+|||.++|++||||++|+|++
T Consensus 549 ----~~~~~ePF~~l~~qGmVl~~~~~~~~~~~~~~~~v~~~~~~~~~~g~KMSKSkGNvv~P~~ii~~yGADalRl~~l 624 (822)
T PRK00390 549 ----LVSSDEPFKKLLTQGMVLGETYYDERGNWVSPADVEVERDEKRIGGIKMSKSKGNVVDPDDIIDKYGADTARLFEM 624 (822)
T ss_pred ----CCCCCCCHHHHEECCEEECCCCCCCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
T ss_conf ----7556777577504456842544445677666011242045567677616765789689899987548079999999
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 23355677543411011100001234443333202444577676774333155567799999999888998753100102
Q gi|254780933|r 621 IMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDV 700 (947)
Q Consensus 621 ~~~~~~~D~~fs~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a 700 (947)
+++++++|++|+++.++++++|++|+||.+.. .........|+|+++++++++++|+++|++|+|+.|
T Consensus 625 ~~ap~~~d~~ws~~~i~g~~rfl~rlw~~~~~------------~~~~~~~~~d~~l~~~l~~~I~~vt~~~e~~~fn~a 692 (822)
T PRK00390 625 FAGPPEKDLEWSDSGVEGAYRFLQRVWRLVYD------------EGAVAALEADKELRRALHKTIKKVTEDIERLRFNTA 692 (822)
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC------------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 60885666120487899999999999997304------------445568723199999999999999999976677699
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEC
Q ss_conf 45777653100136889864765305671444321000145676403456774489999999743566676756536635
Q gi|254780933|r 701 SAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHA 780 (947)
Q Consensus 701 ~~~i~~F~~~~~~~~Yie~~K~~l~~~~~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~ 780 (947)
++.+|+|+ |++ .| ..+..++.++|+.+++|||||+||+|||||+.|++ ++||+.+
T Consensus 693 i~~l~~f~-N~l-------~k-----------~~~~~~l~~~l~~l~rlLaPf~PhiaEElW~~Lg~------~~sV~~~ 747 (822)
T PRK00390 693 IAALMELV-NAL-------SK-----------APDRAVLREALEILVRLLAPFAPHIAEELWQELGH------EGSIANA 747 (822)
T ss_pred HHHHHHHH-HHH-------HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCCEEEC
T ss_conf 99999999-999-------87-----------25189999999999999987889999999997799------9856458
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 78787747789899999999999999988898089977746599964998999999998999998324615871148887
Q gi|254780933|r 781 QWPSLIIDDSESIEEVNWIIDLISKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLECHKCIIDRLSSGNIIFADCPPDR 860 (947)
Q Consensus 781 ~wP~~~~~d~~~~~~~~~~~~ii~~iR~~R~~~~i~~k~~i~i~~~~~~~~~~~~l~~~~~ii~~L~~~~i~~~~~~~~~ 860 (947)
+||++ |+.++.+ + --.+--+.|.+.|..+.+....+.++..+.+.....+.+.|...++..+...|+.
T Consensus 748 ~WP~~---de~~l~~-----~----~~~~~vqiNGK~r~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~k~i~k~I~vp~k 815 (822)
T PRK00390 748 PWPEV---DEAALVE-----D----EVTIVVQVNGKVRGKIEVAADASKEEVEALALADEKVQKFLEGKTIKKVIVVPGK 815 (822)
T ss_pred CCCCC---CHHHHHH-----C----CCEEEEEECCEEEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCC
T ss_conf 99967---8788821-----6----7789999748087799808999999999998649779998589983399998997
Q ss_pred EEEEEEC
Q ss_conf 3799928
Q gi|254780933|r 861 SIQIILD 867 (947)
Q Consensus 861 ~~~~v~~ 867 (947)
.+++|+.
T Consensus 816 iiN~Vvk 822 (822)
T PRK00390 816 LVNIVVK 822 (822)
T ss_pred EEEEEEC
T ss_conf 5899969
No 15
>TIGR00396 leuS_bact leucyl-tRNA synthetase; InterPro: IPR002302 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes the eubacterial and mitochondrial synthetases. The crystal structure of leucyl-tRNA synthetase from the hyperthermophile Thermus thermophilus has an overall architecture that is similar to that of isoleucyl-tRNA synthetase, except that the putative editing domain is inserted at a different position in the primary structure. This feature is unique to prokaryote-like leucyl-tRNA synthetases, as is the presence of a novel additional flexibly inserted domain . ; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1203.21 Aligned_cols=751 Identities=25% Similarity=0.412 Sum_probs=587.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 897898899999998769864453454899808997284499998-6543788967799999876708983567788154
Q gi|254780933|r 7 YDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGS-LHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDH 85 (947)
Q Consensus 7 y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~ppP~~nG~-lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~ 85 (947)
|++.+||+|||++|.++++|+...++-.++++|.+++-.||+||. |||||++||||.|+++||+||+|||||||||||.
T Consensus 1 y~~~~IE~KWq~~W~~~~~~~~~~dpi~~~~K~YiL~MFPYPSG~GLH~GHvR~YTItDvl~Ry~r~~GynVLHP~GwDA 80 (916)
T TIGR00396 1 YNHIEIEKKWQQKWAENKTFKTTDDPISNKPKYYILSMFPYPSGAGLHMGHVRNYTITDVLSRYKRMKGYNVLHPMGWDA 80 (916)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 97000115788873237856520055455786466237879560775016514235764999999862883247667574
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHH
Q ss_conf 54089999999976745998777798999999999999999999999998083664279811588679999999999999
Q gi|254780933|r 86 AGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLY 165 (947)
Q Consensus 86 ~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~ 165 (947)
||||+|.+| ++.+..+ ..||++++..|++||+.||+++||+|+..|+||+||+|+||+|.+||
T Consensus 81 FGLPAEnaA-----I~~~~~P------------~~WT~~NI~~m~~Ql~~LGf~yDw~RE~~T~~P~YYkwtQWiF~~Lf 143 (916)
T TIGR00396 81 FGLPAENAA-----IKRGIHP------------AKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELF 143 (916)
T ss_pred CCCCHHHHH-----HHCCCCC------------HHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 564258999-----8648987------------00378999999999998455644110532388874336668889997
Q ss_pred HCCCEEECCCEEEECCCCCCCCCHHHHHCCCCCC--CEEEEEEEEE-------------------CCCCCCC--------
Q ss_conf 8894331332022037767801486865414687--6699996530-------------------4530001--------
Q gi|254780933|r 166 KDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEVDG--NLWYVRYPLV-------------------EGVTYRH-------- 216 (947)
Q Consensus 166 ~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~~~~--~~~~ik~~l~-------------------~~~~~~~-------- 216 (947)
++||+|+..-+|||||.++|||||.||.. +-+| .||+..+++. ++.....
T Consensus 144 ~kGLaY~ke~~VNWCP~d~TVLANEqVi~-DS~Gna~SwR~~~~Vekk~l~QW~LKIT~YAe~LL~dLe~L~D~WP~~VK 222 (916)
T TIGR00396 144 EKGLAYVKEATVNWCPNDGTVLANEQVII-DSDGNARSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDDHWPESVK 222 (916)
T ss_pred HCCCEEEEEEEEEECCCCCCCCCCHHEEE-CCCCCCEEECCCCCEEEEECCCCEEHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 62852763111330677784510203012-27898532248784466306751011337889854114204678873136
Q ss_pred -----CCCCCCCCCC---CC------CCCCCEEEEEECCCCHHCHHHHHHHHHCCHH------------HHH--------
Q ss_conf -----2455555442---45------6887169998267401010244444410001------------231--------
Q gi|254780933|r 217 -----PIKFDDDAKP---ID------WEVRDYIIVSTTRPETMFGDVAIAVHPDDYR------------YKE-------- 262 (947)
Q Consensus 217 -----~~~~~~~~~~---~~------~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~------------y~~-------- 262 (947)
.+..+.++.. .. ....+.|.|+||||+||||.|.+||.|+..- ..+
T Consensus 223 ~MQrNWIGkS~Gv~~~F~i~d~clkacn~~e~i~VFTTRPdT~fGvtYlalA~~HpLv~~~~~~~~~~~v~~fi~~~~~~ 302 (916)
T TIGR00396 223 EMQRNWIGKSEGVEITFKIADHCLKACNKKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAKNNPKEEVAAFIKKIAQK 302 (916)
T ss_pred HCCCCCCCEEEEEEEEEEECCCHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 40454565552048997425731210378751699866863010026576615785899997408467899999998730
Q ss_pred ---------------HCCCEEEECCCCCCCCCCCCCCCCCCCCCC--EEEECCCCCHHHHHHHHHCCCCCCCEECCCCCC
Q ss_conf ---------------115423320248657321000034212232--032124778556566430465311101677752
Q gi|254780933|r 263 ---------------LIGKYATLPIVGRLIPIVSDVYPDPEFGDG--AVKVTPAHDFNDFEIAKRHGLGFINILTPEAKI 325 (947)
Q Consensus 263 ---------------l~G~~~~~Pl~~~~ipi~~~~~V~~~~GTG--~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~ 325 (947)
..|.+|+|||+|++|||+.++||..+|||| +||.|||||++||++|++|+||+..|+......
T Consensus 303 ~~~~~~~~~~~k~Gv~tg~~AihPlT~e~iPiwvAnYVl~~YGTgPsAVMGVPaHDeRDF~FA~~~~Lpi~~Vi~~~~~~ 382 (916)
T TIGR00396 303 SDLERTKETKEKKGVFTGIYAIHPLTGEKIPIWVANYVLASYGTGPSAVMGVPAHDERDFEFAQKYKLPIKVVIDPADAD 382 (916)
T ss_pred CCHHHHHHHHHCCCCCCCCEEECCCCCCCCCEEEECEEECCCCCCCHHCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCC
T ss_conf 70555566420146466863634767764455763300115789850203588887412799985789715875277766
Q ss_pred CCCC--CCCCCCCC-------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE
Q ss_conf 1366--54445554-------34655465553100151233448889988887643332102232223566655324443
Q gi|254780933|r 326 FLSE--NESFLENI-------VLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCI 396 (947)
Q Consensus 326 ~~~~--~~~~~~~~-------~~~~~~~~~~~~~~G~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~ 396 (947)
..+. ...+.... ...+..+..|++|.|+.-.+|+++|++.|++.|...+...
T Consensus 383 ~~~~~~~~A~t~~g~~~ns~tstdGvltkeC~~f~Gl~~~~A~~~I~~~L~~~~~gk~~v~------------------- 443 (916)
T TIGR00396 383 GKNLKLEQAYTEDGVLVNSSTSTDGVLTKECGEFNGLNSSEAKEAIIKMLEKEGKGKRKVN------------------- 443 (916)
T ss_pred CCCHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEE-------------------
T ss_conf 7511566767646522168765344101000222377617899999999986388502123-------------------
Q ss_pred EHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHC
Q ss_conf 12221214542023334320024411214431135676410111232123545631026983899887657623445420
Q gi|254780933|r 397 TEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSA 476 (947)
Q Consensus 397 ~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~ 476 (947)
|+ ||||.||||||||+||||.||++|+.++...+++++.++
T Consensus 444 ----------------------------------Yr-----LRDW~~SRQRYWG~PIPiih~e~g~~~P~~~~dLPv~LP 484 (916)
T TIGR00396 444 ----------------------------------YR-----LRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVKLP 484 (916)
T ss_pred ----------------------------------EE-----EECCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf ----------------------------------46-----532534400026889877880676842443446871075
Q ss_pred CCCCCCCCCCCC-----CCCCCCCCCCCCCCCEEECCCEECCEEECCCCCCCEECHHH------------HHHCCCCCCC
Q ss_conf 345567877655-----54100256888831018824100220204423332010111------------1000123455
Q gi|254780933|r 477 IDYYLSQDNDMT-----VKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPE------------QTAELKTYYP 539 (947)
Q Consensus 477 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~r~~DvlDtWfdSg~~p~~~l~~p~------------~~~e~~~~~P 539 (947)
.+....+.+... ......+.|+.|+...+|||||||||.+| ||+|...--|. +.+.+++|.|
T Consensus 485 ~~~~~~~~G~~~sPL~~~~~W~~v~~~~~~~~A~RETdTMdtf~~S-sWYylRY~~p~~n~~FWPi~~~~d~e~~~~wlP 563 (916)
T TIGR00396 485 ELVNYDGSGTGESPLSRIKEWVNVTCPSCGKPALRETDTMDTFIGS-SWYYLRYLDPKNNTNFWPIDQPFDKEKAEYWLP 563 (916)
T ss_pred CCCCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHH-HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCC
T ss_conf 0023578889888043074632414788798754337876305777-899986035001766687321302788975588
Q ss_pred CCCCCCCCC--CCCCHHHHHHHHHHHCCCCCCCCC----CCCCCHHCCCCCCCC-------HHHH---------------
Q ss_conf 530124554--321013567776653012113378----685200001443100-------0122---------------
Q gi|254780933|r 540 TSVLVTGFD--ILFFWVARMMMMGLYFMKDAEGKG----IEPFHIVYMHALVRD-------KNGQ--------------- 591 (947)
Q Consensus 540 ~d~~~~G~D--i~r~W~~~~l~~~~~l~~~~~~~~----~~Pfk~v~~hG~vld-------~~G~--------------- 591 (947)
||+||+|.. |++--.+| |.|.+|.+...++. ++||+++++||||+. ++|+
T Consensus 564 VD~YiGG~EHAiLHLLY~R--F~hK~L~D~g~v~~PaGi~EPFkKL~~QGMVlg~~f~y~~~~g~~~W~~p~d~~~~~d~ 641 (916)
T TIGR00396 564 VDLYIGGIEHAILHLLYAR--FFHKFLYDLGLVSTPAGIKEPFKKLINQGMVLGDAFYYKKPNGKRIWVVPADELIERDE 641 (916)
T ss_pred CCEEECCHHHHHHHHHHHH--HHHHHHHHCCCCCCCCCCCCHHHHHHHCCEEECCCEEECCCCCCEEEEECCCCEEECCC
T ss_conf 4410262689989988889--99999974576158776657145542000021161341389973677645751661046
Q ss_pred ---------------------HHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ---------------------55431245653023320254034445431233556775434110111000012344433
Q gi|254780933|r 592 ---------------------KMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAI 650 (947)
Q Consensus 592 ---------------------KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r~f~nKLwNa~ 650 (947)
||||||||+|||.++|++|||||+|+|+|+++|+..++.|+++.|+|.++|++|+||.+
T Consensus 642 ~~d~~~~~d~~~~~~~~~~~~KMSKSK~N~i~P~e~~~~yGADa~Rlf~mF~~P~~~~L~W~~~g~~G~~RFL~RVw~l~ 721 (916)
T TIGR00396 642 KGDIKKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKYGADALRLFIMFMGPIAASLEWNESGLEGARRFLDRVWNLV 721 (916)
T ss_pred CCCCCCCEECCCCCEEEEEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 67865423258882478877762023679887038974048027999997048831414777111013568889999999
Q ss_pred HHHHCCCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 332024445-----7767677433315556779999999988899875310--010245777653100136889864765
Q gi|254780933|r 651 RFSKMKNAR-----HSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHR--FNDVSAVLYRFVWDELCDWYVEFIKSI 723 (947)
Q Consensus 651 rf~~~~~~~-----~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~--f~~a~~~i~~F~~~~~~~~Yie~~K~~ 723 (947)
.=....... ..........++..++-+...++.++++|+++++.-+ ||+|++.+|.|+. . +.|.
T Consensus 722 ~~~~~~~~~~~~avrP~~~~~~~~l~~~~~~~~~~~~~~lk~v~e~~~~~~~~fNT~IS~~M~l~N-~-------L~k~- 792 (916)
T TIGR00396 722 KEILGELSGIISAVRPKTELTETALEEAQKELRREVHKFLKKVTEDLEKLELSFNTAISAMMELLN-A-------LYKA- 792 (916)
T ss_pred HHHCCCHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-H-------HHHH-
T ss_conf 873266000255424610034311230468999999999988875317620135589999999999-9-------8731-
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 30567144432100014567640345677448999999974356667675653663578787747789899999999999
Q gi|254780933|r 724 LNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLIIDDSESIEEVNWIIDLI 803 (947)
Q Consensus 724 l~~~~~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~~~d~~~~~~~~~~~~ii 803 (947)
..+++ . ..++...++.+++||+||+||+|||||+.|+.. ...+..+.||.+ |+.++.+.+. ..||
T Consensus 793 --~~~ge-~---~~~~~e~~~~~~~~L~P~aPhlaeELwe~lg~~-----~~~~~~~~w~~~---D~~~l~~d~k-~~iv 857 (916)
T TIGR00396 793 --TKDGE-D---RALYLEYLKGLVTVLSPFAPHLAEELWEKLGSE-----PSIIKQAKWPKV---DETALVEDKK-VEIV 857 (916)
T ss_pred --CCCCH-H---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-----CCHHHHHCCHHH---CHHHHHCCCE-EEEE
T ss_conf --02341-1---588999999899885152016899999985777-----001544112021---2465412520-5899
Q ss_pred HHHHHHHHHCCCCC--CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEC
Q ss_conf 99998889808997--77465999649989999999989999983246158711488873799928
Q gi|254780933|r 804 SKVRSIRTEMNVPL--KAVVPLVFANIDAHVRKRLECHKCIIDRLSSGNIIFADCPPDRSIQIILD 867 (947)
Q Consensus 804 ~~iR~~R~~~~i~~--k~~i~i~~~~~~~~~~~~l~~~~~ii~~L~~~~i~~~~~~~~~~~~~v~~ 867 (947)
-+.|.+. |..+.+...+.+......+.....+-+.|.+..|..+-..++..+++|+.
T Consensus 858 -------~~~nGK~my~a~~~v~~~a~e~~~~~~a~~d~~~~~~L~n~~i~Kvi~V~~klvN~v~~ 916 (916)
T TIGR00396 858 -------VQVNGKVMYRAKITVPKDADEEQVEELAKADEEVKKYLENKTIKKVIYVPGKLVNFVIK 916 (916)
T ss_pred -------EEEEEEEEEEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCCEEEEEEECCCEEEEEEC
T ss_conf -------99742689867677506788899999971296889853589617999974838988748
No 16
>KOG0433 consensus
Probab=100.00 E-value=0 Score=1148.07 Aligned_cols=722 Identities=23% Similarity=0.385 Sum_probs=617.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 89789889999999876986445345489980899728449999865437889677999998767089835677881545
Q gi|254780933|r 7 YDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHA 86 (947)
Q Consensus 7 y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~ 86 (947)
.|....+++.++-|....++....+ ..+++.|++++ |||.||||||+|++++||+.||+.|+|++|+|+||||||
T Consensus 30 ~n~~~r~~q~~k~~~~~~~~~~~l~-~~~~~~F~L~d----anG~lhlghAlnKILkdiinr~~l~~g~~v~yvPGWDCH 104 (937)
T KOG0433 30 FNSTGRIGQVIEVIQPPEILSSQLS-DQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCH 104 (937)
T ss_pred CCCCCCHHHHHHHHCCHHHHHHHHH-HCCCCEEEEEC----CCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCC
T ss_conf 4532337889988356277888876-42687089864----889801677898999999999999748744257898768
Q ss_pred CHHHH-HHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHH
Q ss_conf 40899-99999976745998777798999999999999999999999998083664279811588679999999999999
Q gi|254780933|r 87 GIATQ-ITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLY 165 (947)
Q Consensus 87 GlPiE-~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~ 165 (947)
||||| .++-+.+..+.+ .++.-+.+.+.+.++++.++.+++.|+|+|++.||.++|.||||.|...+..+|.+||
T Consensus 105 GLPIEs~Kals~l~~~~~----~~spleiR~kAr~fA~~AIk~Q~e~F~r~gv~aDW~npY~T~~~~yeaaQL~iF~~ly 180 (937)
T KOG0433 105 GLPIESTKALSSLTESEG----SRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLY 180 (937)
T ss_pred CCCHHHHHHHHHCHHHCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEECCHHHHHHHHHHHHHHH
T ss_conf 873687787553212114----6781899999999999999999999887501105788306238077899999999998
Q ss_pred HCCCEEECCCEEEECCCCCCCCCHHHHHCCC-CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCH
Q ss_conf 8894331332022037767801486865414-687669999653045300012455555442456887169998267401
Q gi|254780933|r 166 KDGLIYRDKRIVNWDPSLKTSVSDLEVIQKE-VDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPET 244 (947)
Q Consensus 166 ~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~-~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeT 244 (947)
++|||||+.+||+|+|..+|+||++|+||.+ +.+++.|++|+|....... ..........|.+||||+|||
T Consensus 181 ekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~S~Y~~F~L~~~S~~~--------~~~~~~~~~iyaLVWTTTPWT 252 (937)
T KOG0433 181 EKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQSTSAYFRFKLINFSSSA--------HSEDSKIPQIYALVWTTTPWT 252 (937)
T ss_pred HCCCEECCCCCCEECCCCHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCC--------CCCCCCCCCEEEEEEECCCCC
T ss_conf 666133057760136753125556431578677551489998636776221--------257776674799998478754
Q ss_pred HCHHHHHHHHHCCH---------------------------------------HHHHHCCCEEEECCC-CCCCCCCCCCC
Q ss_conf 01024444441000---------------------------------------123111542332024-86573210000
Q gi|254780933|r 245 MFGDVAIAVHPDDY---------------------------------------RYKELIGKYATLPIV-GRLIPIVSDVY 284 (947)
Q Consensus 245 l~g~~a~~v~P~d~---------------------------------------~y~~l~G~~~~~Pl~-~~~ipi~~~~~ 284 (947)
||+|.|+++||+-. .+.+|.|.++.||+. ....|++.++|
T Consensus 253 lPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~~~~k~~i~~t~~g~~L~~~~Y~hpl~~~~~~P~l~g~h 332 (937)
T KOG0433 253 LPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPH 332 (937)
T ss_pred CCCCCEEEECCCCCEEEEEECCCCCCEEEEECCCHHHHHHHHCCCCEEEEEECCHHHCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 54664135323340589992367766599970010666653138643453003622315762368676556886424663
Q ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHH
Q ss_conf 342122320321247785565664304653111016777521366544455543465546555310015123-3448889
Q gi|254780933|r 285 PDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCF-AARSKIV 363 (947)
Q Consensus 285 V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~-~a~~~ii 363 (947)
|+++.|||+||.|||||++||.++..+|||+...++++|+++..+. ..+.|+.|. |..+.++
T Consensus 333 VT~~~GTGLVHTAPaHG~eDYlv~l~~gl~~~s~VD~~G~yT~ea~-----------------~~l~Gk~VL~eG~k~vl 395 (937)
T KOG0433 333 VTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRGCYTREAG-----------------HDLDGKEVLGEGQKIVL 395 (937)
T ss_pred EECCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECCCC-----------------CCCCCCHHHCCCCHHHH
T ss_conf 3047566204417877748777776439976665577771340146-----------------41256112326307699
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHCCCCCCC
Q ss_conf 98888764333210223222356665532444312221214542023334320024411214431135676410111232
Q gi|254780933|r 364 SLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCI 443 (947)
Q Consensus 364 ~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~~~~DW~I 443 (947)
..|. ..+++.++|+|||||+|||++|||.|+++||||++++++.++.+++. +++|+|.....++..++..+++|||
T Consensus 396 ~~l~--~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~--~Vk~~P~~~~~rl~~~~~~Rp~WCI 471 (937)
T KOG0433 396 RLLN--HDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALD--DVKVAPGDSDLRLKQLVTTRPSWCI 471 (937)
T ss_pred HHHH--HHHHHHHCCCCCCCCCCCCCCCEEEECCHHHEEEHHHHHHHHHHHHH--HCEECCCCHHHHHHHHHCCCCCCEE
T ss_conf 9986--54552010232588654558965995061550247755068999885--1243786308899999717974055
Q ss_pred CCCCCCCCCEEEEECCCCCEEECCCC------HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCEEEC
Q ss_conf 12354563102698389988765762------344542034556787765554100256888831018824100220204
Q gi|254780933|r 444 SRQIWWGHQIPVWYSPDGKLFVENTE------DAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSS 517 (947)
Q Consensus 444 SRqr~WG~pIPvw~~~~~~~~v~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtWfdS 517 (947)
||||.||+|||++|...++.+.-... ........|.|.....+...+.+....-+.....+.|.+|+||+||||
T Consensus 472 SRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~e~~d~a~ey~kgtDimDVWFDS 551 (937)
T KOG0433 472 SRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVREIPDIASEYKKGTDIMDVWFDS 551 (937)
T ss_pred EECCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCEEECCHHHHCCHHHHCCCCHHHHHHCCCCCEEEEEECC
T ss_conf 32101588520578548983512589999999999871876327678567170766301311688743688316667628
Q ss_pred C-CCCCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHH
Q ss_conf 4-233320101111000123455530124554321013567776653012113378685200001443100012255431
Q gi|254780933|r 518 A-LWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKS 596 (947)
Q Consensus 518 g-~~p~~~l~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS 596 (947)
| +|.. +++ + +.-.++|++.||.||+||||+++++++++.. ++.||+.|++|||++|++|.|||||
T Consensus 552 GssWs~-v~~--~-----~~~~~aDv~LEG~DQ~rGWFQSsLLTsvA~q------~kAPYk~vivHGFtlDE~G~KMSKS 617 (937)
T KOG0433 552 GSSWSA-VLD--N-----EREHVADVYLEGVDQFRGWFQSSLLTSVAVQ------NKAPYKKVIVHGFTLDENGNKMSKS 617 (937)
T ss_pred CCCCEE-ECC--C-----CCCCCEEEEEECCHHCCHHHHHHHHHHHHHH------CCCCCHHEEEEEEEECCCCCCHHHC
T ss_conf 885100-047--8-----8875000688441201237899999999872------4687232156203766775421002
Q ss_pred CCCCCCHHHHHCC------CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC--CCCCC
Q ss_conf 2456530233202------540344454312335567754341101110000123444333320244457767--67743
Q gi|254780933|r 597 KGNVVDPIDVIDQ------YGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSVS--FVPQD 668 (947)
Q Consensus 597 ~GNvidp~e~i~~------yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~--~~~~~ 668 (947)
+||||||..+++. ||||++|||++. +....|+......+.+...-+.|+.|++||++++..+.... ..|..
T Consensus 618 lGNVidP~~vi~G~~k~payGaD~LR~WVA~-s~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~ 696 (937)
T KOG0433 618 LGNVVDPTMVTDGSLKQPAYGADGLRFWVAG-SENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLK 696 (937)
T ss_pred CCCCCCHHHHHCCCCCCCCCCCCCEEEEEEC-CCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 2675788998477566887564100134423-555575102889999999999999757798850411247765510010
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHH
Q ss_conf 33155567799999999888998753100102457776531001368898647653056--7144432100014567640
Q gi|254780933|r 669 VKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQK--DSELVSETLSCFSYVLYNV 746 (947)
Q Consensus 669 ~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~--~~~~~~~~~~~l~~vl~~~ 746 (947)
.+..+|+++|.+++.+++++.+.|++|+|+++++.+..|+.++||++|+.++|+|||++ ++..+++++++|++++.++
T Consensus 697 dl~~iDqy~L~ql~~~~~~i~elY~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l 776 (937)
T KOG0433 697 DLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNL 776 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 32232499999999999999999985158999999999999776678999876653058888688889999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 3456774489999999743566676756536635787877
Q gi|254780933|r 747 CKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLI 786 (947)
Q Consensus 747 l~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~ 786 (947)
++.++||+||++||+||+|+... ++ ++...||...
T Consensus 777 ~~~iaPIlP~LaeEvwq~lP~~~----~~-~fr~k~~~l~ 811 (937)
T KOG0433 777 AHIISPILPHLAEEVWQHLPGSH----EK-IFRLKWEDLH 811 (937)
T ss_pred HHHHCCCCHHHHHHHHHHCCCCC----CC-CCCCCCCCCC
T ss_conf 99973431788999997487878----86-5224765246
No 17
>TIGR00395 leuS_arch leucyl-tRNA synthetase; InterPro: IPR004493 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases.; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1142.11 Aligned_cols=801 Identities=23% Similarity=0.371 Sum_probs=628.1
Q ss_pred HHHHHHHHHHHHHCCCCCCC----------CCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 89889999999876986445----------34548---998089972844999986543788967799999876708983
Q gi|254780933|r 10 AFIEQKSVEKWNSVDAFRID----------VAPKL---GSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKN 76 (947)
Q Consensus 10 ~~iE~~~~~~W~~~~~f~~~----------~~~~~---~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~ 76 (947)
.+||+|||+.|+++++||.+ ++.+. .-|||++..+|||+||.||+||+||+|+.|+++||+||+|||
T Consensus 1 ~~IE~Kwqk~W~~~~iFe~daPsieDePitpd~~ElhrtYPKff~t~AYPYlnG~lHaGH~rT~t~~e~~arF~RM~Gkn 80 (1109)
T TIGR00395 1 IAIEKKWQKRWEEAKIFEADAPSIEDEPITPDDRELHRTYPKFFLTVAYPYLNGVLHAGHLRTFTIPEVVARFERMKGKN 80 (1109)
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCE
T ss_conf 94125678735544775147776567888886113431155032015765567442123344333131588766106840
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHH-----------------------H-------------------------
Q ss_conf 5677881545408999999997674599877-----------------------7-------------------------
Q gi|254780933|r 77 VLWQPGTDHAGIATQITVESRLFAQSSLTRE-----------------------D------------------------- 108 (947)
Q Consensus 77 Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~-----------------------~------------------------- 108 (947)
||||+||||+|+|| +..-.++......++. +
T Consensus 81 vLFPlGfHvTG~Pi-lg~A~~i~~~de~t~~~Y~~~h~eeeeikeetPaekDheDvtkfkakkskaaakkGrGkYqfeim 159 (1109)
T TIGR00395 81 VLFPLGFHVTGTPI-LGLAELIKRRDEKTIKVYTEVHAEEEEIKEETPAEKDHEDVTKFKAKKSKAAAKKGRGKYQFEIM 159 (1109)
T ss_pred ECCCCCCCCCCCCH-HHHHHHHHHCCHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 02246544358627-88999973006046788520575134430157764441456666544435666417873124563
Q ss_pred --CC--HHHHHH--HHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCC--HHHHHHHHHHHHHHHHCCCEEECCCEEEEC
Q ss_conf --79--899999--9999999999999999998083664279811588--679999999999999889433133202203
Q gi|254780933|r 109 --IG--RDAFIE--KVWEWKKESGGSILSQLKRLGASCDWSRERFTMD--EGMSNAVRNAFVVLYKDGLIYRDKRIVNWD 180 (947)
Q Consensus 109 --~g--~~~f~~--~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d--~~y~~~v~~~F~~L~~~gliy~~~~~v~w~ 180 (947)
+| +++.++ -...|+++|.....+.+++||+|+||||.|.|+| |.|.+|++|||.||.+.|||.+|.|||-||
T Consensus 160 lqlGiP~eel~~l~dpe~iveYFs~~~~~~~~~~G~siDWRR~F~TtDan~~Y~~FI~WQ~~KLk~~Gli~kG~hpv~Yc 239 (1109)
T TIGR00395 160 LQLGIPREELLKLTDPEYIVEYFSREAESALKSMGYSIDWRREFKTTDANPVYDRFIEWQIRKLKELGLIVKGEHPVRYC 239 (1109)
T ss_pred EECCCCHHHHHHHCCCCEEEECCCHHHHHHHHHCCCEEECCCCCEECCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCC
T ss_conf 31379879997204843021038877999998648805225552125874666789999999998659544178660237
Q ss_pred CCCCCCCCHHHHHCCC--CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCH
Q ss_conf 7767801486865414--68766999965304530001245555544245688716999826740101024444441000
Q gi|254780933|r 181 PSLKTSVSDLEVIQKE--VDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDY 258 (947)
Q Consensus 181 p~~~T~ls~~Ev~~~~--~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~ 258 (947)
|.|+.|+.||++-.+| ......-|||.+.|+.+...++-.+ ....+....-++++||.||||+||.|+|||||+..
T Consensus 240 p~d~npv~DHD~l~GE~vt~~ey~~~Kf~~~d~~DDaakiiDs--ssDlDkskk~~~v~ATLRPET~yG~Tn~wv~P~~~ 317 (1109)
T TIGR00395 240 PKDENPVEDHDLLSGEGVTIVEYILIKFKLEDGADDAAKIIDS--SSDLDKSKKLYFVAATLRPETVYGVTNVWVNPDIT 317 (1109)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHH--HHHHHCCCCEEEECCCCCCCHHHCCEEEEECCCCC
T ss_conf 7776854455533356433010367666642775302454311--11010145166403568874100755355557751
Q ss_pred ----------------------------------------------------HHHHHCCCEEEEC-CCCCCCCCCCCCCC
Q ss_conf ----------------------------------------------------1231115423320-24865732100003
Q gi|254780933|r 259 ----------------------------------------------------RYKELIGKYATLP-IVGRLIPIVSDVYP 285 (947)
Q Consensus 259 ----------------------------------------------------~y~~l~G~~~~~P-l~~~~ipi~~~~~V 285 (947)
...+|+|+++.+| ++++++||++++||
T Consensus 318 Yv~~~~~~e~etenGielienGiwi~~~~A~~~L~yq~~~PkrGf~~~~~~v~g~~liG~~v~~Pq~v~~e~pILPa~fV 397 (1109)
T TIGR00395 318 YVIAEVGGEKETENGIELIENGIWIVSKEAVENLSYQKLKPKRGFLKVIEEVDGKQLIGKKVKNPQVVGKEVPILPAEFV 397 (1109)
T ss_pred EEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECHHHHCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 68997337400120044554225777899996043434588742278865307342417644577325897754770112
Q ss_pred CCCCCCCEEEECCCCCHHHHHH----------HHHCC--------CCCCCEECCCCCCCCCCCCCCCCCCCCCC------
Q ss_conf 4212232032124778556566----------43046--------53111016777521366544455543465------
Q gi|254780933|r 286 DPEFGDGAVKVTPAHDFNDFEI----------AKRHG--------LGFINILTPEAKIFLSENESFLENIVLSD------ 341 (947)
Q Consensus 286 ~~~~GTG~V~~~Pah~~~Dy~~----------~~~~~--------l~~~~~~~~~g~~~~~~~~~~~~~~~~~~------ 341 (947)
+++.|||||||||||+|.||.. ..+|| +++++++..++.....+.....+....+-
T Consensus 398 ~~~~gTGvV~sVPahaP~Dyia~~DL~~d~E~l~~YGi~k~~v~di~~v~~i~~~~yG~~pA~~ive~~gi~sq~dk~~L 477 (1109)
T TIGR00395 398 DTEKGTGVVMSVPAHAPADYIALEDLKRDEELLEKYGIIKDVVEDIEPVPLIKVDGYGDLPAKEIVEELGIKSQKDKNLL 477 (1109)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHCCCCHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCHHHH
T ss_conf 67888547884178870358999860778014553277324664148556763088777548999988288887720247
Q ss_pred ---------------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCE-EEEEEHHHEECC
Q ss_conf ---------------5465553100151233448889988887643332102-23222356665532-444312221214
Q gi|254780933|r 342 ---------------EARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSY-RHIVPHCERSGVTI-EPCITEQWYLDA 404 (947)
Q Consensus 342 ---------------~~~~~~~~~~G~~v~~a~~~ii~~L~~~g~l~~~~~~-~h~~p~c~R~~~~i-~~~~~~QWfi~~ 404 (947)
--...+..|.|++|.+||++|.++|.+.|+..-.... +..| .| |||++| +-++.+||||+|
T Consensus 478 ~~Atk~~YK~ey~~Gvm~~~~~~Y~G~kV~eak~~v~~dL~~~GlA~v~yEFsE~~V-ic-RcG~~CiV~v~~DQWF~~Y 555 (1109)
T TIGR00395 478 EEATKELYKEEYHTGVMIENILDYKGMKVSEAKEKVKEDLIDKGLADVMYEFSEKPV-IC-RCGTKCIVKVVEDQWFVKY 555 (1109)
T ss_pred HHHHHHHCHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCE-EE-CCCCCCEEEEECCEEEEEC
T ss_conf 887400221321500320477578861179999999999985378602016578851-20-2679606988516001114
Q ss_pred --CCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCC
Q ss_conf --542023334320024411214431135676410111232123545631026983899887657623445420345567
Q gi|254780933|r 405 --KVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLS 482 (947)
Q Consensus 405 --~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~ 482 (947)
++||+.++++++ .|+++|+..|+.|.+-|++|+||+|||.++.||+|| | |.++++++++|+++|+++.....
T Consensus 556 s~~~WK~~a~~CLe--gM~~ip~~~k~~F~~~idWL~dwAc~Rr~GLGTrlP-w---de~wliESLsDSTIY~aYYtiA~ 629 (1109)
T TIGR00395 556 SDESWKELAHECLE--GMRIIPEEVKEAFEEKIDWLKDWACARRKGLGTRLP-W---DEKWLIESLSDSTIYMAYYTIAK 629 (1109)
T ss_pred CCHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCC-C---CCCEEEECCCCCHHHHHHHHHHH
T ss_conf 51568999998743--373276888888877666423630461246777787-5---67547712762325678999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCEECCEE-ECCC---------CCCCEECHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 877655541002568888310188241002202-0442---------333201011110001234555301245543210
Q gi|254780933|r 483 QDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWF-SSAL---------WPFASLGWPEQTAELKTYYPTSVLVTGFDILFF 552 (947)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtWf-dSg~---------~p~~~l~~p~~~~e~~~~~P~d~~~~G~Di~r~ 552 (947)
......... ..+..+...++|+ +++||.=| +.|= .|.-.+ -.-++||.||||+|++++|+|+|-+
T Consensus 630 ~l~~~~~g~-EiGPlGisaD~mt--~E~fDyifl~~gdV~K~Ak~t~ip~~~~--~~lR~eF~Y~YPlD~r~SgKDLi~N 704 (1109)
T TIGR00395 630 YLNKDDLGN-EIGPLGISADQMT--DEFFDYIFLGKGDVDKVAKNTNIPLELI--EKLREEFEYWYPLDWRISGKDLIPN 704 (1109)
T ss_pred HHHHCCCCC-CCCCCCCCHHCCC--HHHHHHHHCCCCCHHHHHHHHCCCHHHH--HHHHHHCCEECCCCCCCCCCCCCHH
T ss_conf 985214577-6455544420057--4452243238871567765407888899--8755434100560100243101034
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 13567776653012113378685200001443100012255431245653023320254034445431233556775434
Q gi|254780933|r 553 WVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLD 632 (947)
Q Consensus 553 W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs 632 (947)
|+.+.|+.|+|+|.... +| +.+.++|+|. -+|+|||||+||++...+++++||||+.|+|++.+|.+.+|.+|.
T Consensus 705 HLtFyiF~HvAiFP~~~----WP-rGi~vnG~~~-Leg~KmSkSkGn~l~l~~~vekfGADv~Rl~~~~aAe~~~Dad~~ 778 (1109)
T TIGR00395 705 HLTFYIFHHVAIFPEKF----WP-RGIVVNGYVL-LEGKKMSKSKGNVLTLKEAVEKFGADVARLYILDAAELVQDADWK 778 (1109)
T ss_pred HHHHHHHHEEEECCCCC----CC-CEEEEEEEEE-EECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 67766440024248798----97-6179975788-717340545476223889998727618999997317872135610
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCC-CCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHH
Q ss_conf 110111000012344433332024-44577-6767743331555677999999998889987531001024-57776531
Q gi|254780933|r 633 LERIAGYRNFITKFWNAIRFSKMK-NARHS-VSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVS-AVLYRFVW 709 (947)
Q Consensus 633 ~~~i~~~r~f~nKLwNa~rf~~~~-~~~~~-~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~-~~i~~F~~ 709 (947)
+..+++.++-+..|.|-.+=+... +..+- ...-|.+..+.+|||++++|+++|+++.++|++++++.|+ .++|+|.-
T Consensus 779 ~~e~~~~~~~L~~l~~~a~e~~~~~~GrPvl~e~GPaE~~~f~D~wl~~~l~~~i~~~~e~~~~~~~r~A~~~~Lf~L~~ 858 (1109)
T TIGR00395 779 ESEVEGTKKRLERLYEFAEEITKKSDGRPVLLEVGPAEELSFIDRWLLSRLNKAIKEVTEAMENFQTRKAVKAALFDLKA 858 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67789999999999999999854306840110357776310521899999999999999999866678999999999999
Q ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCC--
Q ss_conf 001368898647653056714443210001456764034567744899999997435666767565366357878774--
Q gi|254780933|r 710 DELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLII-- 787 (947)
Q Consensus 710 ~~~~~~Yie~~K~~l~~~~~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~~-- 787 (947)
+ -+||++++ +...+.++..+|..+|+.+++||+||+||+|||||+.+-| .++||..++||+++.
T Consensus 859 d--~~~Y~~r~-------g~~~~Devksvla~~l~~~i~LlaPf~Ph~aEe~w~~~lG-----~~~fV~~a~fP~~~~~~ 924 (1109)
T TIGR00395 859 D--VDWYRRRG-------GENVKDEVKSVLARVLETWIKLLAPFAPHLAEEMWEEVLG-----KEGFVSLAKFPEASEEA 924 (1109)
T ss_pred H--HHHHHHHC-------CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC-----CCCCCCCCCCCCCCCHH
T ss_conf 9--99999864-------8840057999999999999998323121689999999708-----87311367798987502
Q ss_pred CCHHHHHHHHHHHHHHHHHHH-----HHHHC----CCCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHCCCC
Q ss_conf 778989999999999999998-----88980----8997774659996499---899999999899999832461
Q gi|254780933|r 788 DDSESIEEVNWIIDLISKVRS-----IRTEM----NVPLKAVVPLVFANID---AHVRKRLECHKCIIDRLSSGN 850 (947)
Q Consensus 788 ~d~~~~~~~~~~~~ii~~iR~-----~R~~~----~i~~k~~i~i~~~~~~---~~~~~~l~~~~~ii~~L~~~~ 850 (947)
.|..+...-+++++++++||- +++.. +|--.++..+++..++ .+....++ ++.++...+
T Consensus 925 v~~~v~~~eeylrn~~~dI~EGeGqalkkkkGki~~i~~~~P~~v~l~~s~sfP~Wk~~~~~----iv~e~~~~~ 995 (1109)
T TIGR00395 925 VDKEVEKAEEYLRNLVRDIQEGEGQALKKKKGKIAKIVASKPKRVYLYTSESFPDWKVEVLK----IVAELEGED 995 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHH----HHHHHCCCC
T ss_conf 10689999999998886510366502241078457752568628999637888256999999----999832533
No 18
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=1063.95 Aligned_cols=734 Identities=25% Similarity=0.383 Sum_probs=557.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 87678978988999999987698644534548998089972844999986543788967799999876708983567788
Q gi|254780933|r 3 IDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPG 82 (947)
Q Consensus 3 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G 82 (947)
|...|++.+||+|||++|+++++|+.+.+.+.+ +||.+++++||+||.||+||++|||+.||++||+||+|||||||||
T Consensus 1 ~~~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~~-~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG 79 (814)
T COG0495 1 MMSRYNPREIEEKWQKRWEEAKVFEADEDSDKP-EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMG 79 (814)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCC
T ss_conf 976523578999999999865971068988877-7559986787888873468541210899999999856972145675
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHH
Q ss_conf 15454089999999976745998777798999999999999999999999998083664279811588679999999999
Q gi|254780933|r 83 TDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFV 162 (947)
Q Consensus 83 ~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~ 162 (947)
||++|||||..+++. +.+ .+.|+++|++.|++|+++||+|+||+|++.|+||+|++|+||+|.
T Consensus 80 wdafGlPae~~A~~~-----~~~------------P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~ 142 (814)
T COG0495 80 WDAFGLPAENAAIKI-----GTD------------PAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFL 142 (814)
T ss_pred CCCCCCHHHHHHHHH-----CCC------------HHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHH
T ss_conf 566686399999985-----789------------699999999999999998087612355456479647799999999
Q ss_pred HHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCC----------CCCCEEEEEEEEECCC-------CC-----------
Q ss_conf 9998894331332022037767801486865414----------6876699996530453-------00-----------
Q gi|254780933|r 163 VLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKE----------VDGNLWYVRYPLVEGV-------TY----------- 214 (947)
Q Consensus 163 ~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~----------~~~~~~~ik~~l~~~~-------~~----------- 214 (947)
+|+++||||++.++|||||.|+|||||+||..+. +.=+.|+++ +.+.. ..
T Consensus 143 kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~k--it~yae~ll~~l~~l~~~wPE~Vk~ 220 (814)
T COG0495 143 KLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFK--ITDYADELLDDLDKLATLWPETVKG 220 (814)
T ss_pred HHHHCCCEEECCCCCEECCCCCCCCCCCEEECCCCCCCCCCEEEEEEEEEEEE--ECHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 99977988852554310777697615412415876557885268666899999--1342999986666542479566998
Q ss_pred --CCCCCCCCCCCCCCC-CC---CCEEEEEECCCCHHCHHHHHHHHHCCHHH------------H---------------
Q ss_conf --012455555442456-88---71699982674010102444444100012------------3---------------
Q gi|254780933|r 215 --RHPIKFDDDAKPIDW-EV---RDYIIVSTTRPETMFGDVAIAVHPDDYRY------------K--------------- 261 (947)
Q Consensus 215 --~~~~~~~~~~~~~~~-~~---~~~l~v~TtrPeTl~g~~a~~v~P~d~~y------------~--------------- 261 (947)
...+..+........ .. ...+.|+||||+|++|.+.+++-|+..-. .
T Consensus 221 mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~ 300 (814)
T COG0495 221 MQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESV 300 (814)
T ss_pred HHHCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 98727078887589985177644100244663573116748999707866789874186516699999886178715630
Q ss_pred --------HHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf --------111542332024865732100003421223203212477855656643046531110167775213665444
Q gi|254780933|r 262 --------ELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESF 333 (947)
Q Consensus 262 --------~l~G~~~~~Pl~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~ 333 (947)
-..|-+++||+.++.|||+.++||.+.+|||+||.+||||.+|++++++|+||+..++...+. ......
T Consensus 301 ~~~~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~---~~~~~~ 377 (814)
T COG0495 301 PAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGT---VGKKVY 377 (814)
T ss_pred ECCCCCCCEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHCCCCEEEEEECCCC---CCCEEE
T ss_conf 45687763113650247777886778996743145556635458888702068998528861799824887---664001
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHH
Q ss_conf 55543465546555310015123344888998888764333210223222356665532444312221214542023334
Q gi|254780933|r 334 LENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIR 413 (947)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~G~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~ 413 (947)
..+.. .-..+.++|+...+|...|+.. |+-+..+|||++|.
T Consensus 378 ~~~g~-----linS~~~~gl~~e~a~~~~~~~--------------------------l~~~~~~q~~v~Y~-------- 418 (814)
T COG0495 378 EGEGV-----LINSGGLDGLDYEEAKVKIRCG--------------------------LVKRGLGQWFVNYR-------- 418 (814)
T ss_pred CCCCE-----EECCCCCCCCCCHHHHHHHHHH--------------------------HHHHCCCCEEEECC--------
T ss_conf 14745-----7625433676405679999986--------------------------88723782588514--------
Q ss_pred HHHCCCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCC--CCCCCCC
Q ss_conf 32002441121443113567641011123212354563102698389988765762344542034556787--7655541
Q gi|254780933|r 414 SAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQD--NDMTVKV 491 (947)
Q Consensus 414 ~~~~~~i~~~P~~~~~~~~~wl~~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~ 491 (947)
+|||++|||||||+||||.+|++|+.+....+++++..+......+. .-...+.
T Consensus 419 ------------------------lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~ 474 (814)
T COG0495 419 ------------------------LRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEE 474 (814)
T ss_pred ------------------------CCHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ------------------------51577899997089964547423785547367667436641146798899988836
Q ss_pred CCCCCCCCCCCCEEECCCEECCEEECCCCCCCEEC-------HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 00256888831018824100220204423332010-------11110001234555301245543210135677766530
Q gi|254780933|r 492 RKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLG-------WPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYF 564 (947)
Q Consensus 492 ~~~~~~~~~~~~~~r~~DvlDtWfdSg~~p~~~l~-------~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l 564 (947)
.....|+. .+..|++||||||++| +|+|...- -+...++|+||||+|++++|+|..-.|+-+..+.|.+|
T Consensus 475 W~~~s~~~--s~~~ret~Tm~~~~~s-swy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~hkal 551 (814)
T COG0495 475 WVIESLPD--STAYRETDTMDTFIDS-SWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKAL 551 (814)
T ss_pred EEEEECCC--CCEEEEHHHHHHHCCC-CCCCHHHCCHHCCCCCHHCHHHHHCCCCHHEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 17996699--8535323246576043-21018665810075432257887420672012263667778899999999883
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 12113378685200001443100012255431245653023320254034445431233556775434110111000012
Q gi|254780933|r 565 MKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFIT 644 (947)
Q Consensus 565 ~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r~f~n 644 (947)
++...++..+||+++++||||+..+|+||||||||+|+|.++|++||||++|+|+|+++++.+|++|+++.++|.++|++
T Consensus 552 ~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~ 631 (814)
T COG0495 552 FDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQ 631 (814)
T ss_pred CCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHH
T ss_conf 47577877650444411426874277704544578889899999958409899998608775378877456489999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 34443333202444577676774333155567799999999888998753-10010245777653100136889864765
Q gi|254780933|r 645 KFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMEN-HRFNDVSAVLYRFVWDELCDWYVEFIKSI 723 (947)
Q Consensus 645 KLwNa~rf~~~~~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~-~~f~~a~~~i~~F~~~~~~~~Yie~~K~~ 723 (947)
++||...=..... ...........|+|+++++ ++.|++++++ +.|+.|...+|.|+. + -.+|.+....
T Consensus 632 r~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~h~~---~~~v~~~~e~~~~~nt~i~~~m~l~N-~-l~~~~~~~~~- 700 (814)
T COG0495 632 RVWNLVKEHLEKL-----VEELTKEQGKEDRWLLHRT---IKKVTEDFEARQTFNTAIAALMELLN-A-LRKYLRRTEG- 700 (814)
T ss_pred HHHHHHHHHHHCC-----CCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHCCC-
T ss_conf 9999999864023-----3335530568899999999---99999999999889999999999999-9-9998750232-
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 30567144432100014567640345677448999999974356667675653663578787747789899999999999
Q gi|254780933|r 724 LNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLIIDDSESIEEVNWIIDLI 803 (947)
Q Consensus 724 l~~~~~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~~~d~~~~~~~~~~~~ii 803 (947)
+. .++..+++.+++||+||+||+|||||+.|++ .+++..++||+.. +..+..-.
T Consensus 701 ----~~-------~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~------~~~v~~~~wP~~d---e~~l~~~~------ 754 (814)
T COG0495 701 ----DR-------KVLREALETWVRLLAPFAPHIAEELWEELGN------EGFVSNAPWPEPD---EEALVEDE------ 754 (814)
T ss_pred ----HH-------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC------CCCEEECCCCCCC---HHHCCCCE------
T ss_conf ----07-------8999999999999666664779999999669------9816417899877---34416550------
Q ss_pred HHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEE
Q ss_conf 99998889808997774659996499899999999899999832461587114888737999
Q gi|254780933|r 804 SKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLECHKCIIDRLSSGNIIFADCPPDRSIQII 865 (947)
Q Consensus 804 ~~iR~~R~~~~i~~k~~i~i~~~~~~~~~~~~l~~~~~ii~~L~~~~i~~~~~~~~~~~~~v 865 (947)
..+-.+.|.+.+.++.+.....+.+.....-..+.+.+.|....+......|..-+.++
T Consensus 755 ---~~~~vqvngk~r~~~~~~~~a~~~~~~~~~~~~~~v~~~l~~~~~~k~i~VP~k~vn~v 813 (814)
T COG0495 755 ---VEIVVQVNGKVRAREVVAADADEEKVKEIALADEEVQKFLQGKTIKKVIAVPGKPVNIV 813 (814)
T ss_pred ---EEEEEEECCEEEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCCCCEEEECCCCCEEEE
T ss_conf ---59999980289789997477987899999862388999876788514896499614886
No 19
>KOG0435 consensus
Probab=100.00 E-value=0 Score=903.57 Aligned_cols=655 Identities=27% Similarity=0.393 Sum_probs=493.4
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE-ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 9789889999999876986445345489980899-728449999865437889677999998767089835677881545
Q gi|254780933|r 8 DFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCI-AMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHA 86 (947)
Q Consensus 8 ~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~-~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~ 86 (947)
....||+.|+++|.+.-.|..+ .+.++++|++ ++||| ||.|||||++.|||.|+++||+||+||||++|||||.+
T Consensus 31 ~~~~iEk~W~~~~~~~~~~~~~--~d~sk~KYiLsMFPYP--SG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaF 106 (876)
T KOG0435 31 AIAMIEKHWKQYLKDGFPFSKD--SDKSKKKYILSMFPYP--SGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAF 106 (876)
T ss_pred HHHHHHHHHHHHHHCCCCCCCC--CCCCCCCEEEEECCCC--CCCCCCCCEEEEEEHHHHHHHHHHCCCEEECCCCCCCC
T ss_conf 5777778899987537866563--4357873699736788--87611264279972588999998548642157763034
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHH
Q ss_conf 40899999999767459987777989999999999999999999999980836642798115886799999999999998
Q gi|254780933|r 87 GIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYK 166 (947)
Q Consensus 87 GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~ 166 (947)
|||+|+++ ++.+.+. +.|+..+++.|++|+++||+++||+|+..||+|+|++|+||+|.+||+
T Consensus 107 GLPAENAA-----iergv~P------------~sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe 169 (876)
T KOG0435 107 GLPAENAA-----IERGVHP------------ASWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFE 169 (876)
T ss_pred CCCHHHHH-----HHCCCCC------------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 88356678-----7548892------------054698999999999973760124553234783156789999999997
Q ss_pred CCCEEECCCEEEECCCCCCCCCHHHHHCCCCCCCEEEEEE-------------------EEECCCCCC-----------C
Q ss_conf 8943313320220377678014868654146876699996-------------------530453000-----------1
Q gi|254780933|r 167 DGLIYRDKRIVNWDPSLKTSVSDLEVIQKEVDGNLWYVRY-------------------PLVEGVTYR-----------H 216 (947)
Q Consensus 167 ~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~~~~~~~~ik~-------------------~l~~~~~~~-----------~ 216 (947)
+||.||.+.+|||||.++|+||+.+|. ..|.||+-.- .|.++.... +
T Consensus 170 ~GLAYq~Ea~VNWDPvD~TVLAnEQVD---~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrn 246 (876)
T KOG0435 170 KGLAYQAEAEVNWDPVDKTVLANEQVD---ADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRN 246 (876)
T ss_pred HHHHHCCCCCCCCCCCCCEEECCHHHC---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 112211135366572012153220103---55755345654657788889863168899999998750301668999874
Q ss_pred CCCCCCC---CC--CCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCH------HHHH------HC------CCEEEECCC
Q ss_conf 2455555---44--245688716999826740101024444441000------1231------11------542332024
Q gi|254780933|r 217 PIKFDDD---AK--PIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDY------RYKE------LI------GKYATLPIV 273 (947)
Q Consensus 217 ~~~~~~~---~~--~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~------~y~~------l~------G~~~~~Pl~ 273 (947)
.+..... .. ......++-|.|+|||||||+|.+.+++.|+.. -+++ |- +-++.+|++
T Consensus 247 WIG~~~G~el~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~t 326 (876)
T KOG0435 247 WIGRCDGAELMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVT 326 (876)
T ss_pred HCCCCCCEEEEEEECCCCCCCCEEEEEECCCHHHCCCEEEEECCCCHHHHHHCHHHHHHHHHHCCCCCCCCCEEECCCCC
T ss_conf 31245420798783268778745899945824422625799737754665303387764444323667535414316777
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCE----ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 865732100003421223203212477855656643046531110----1677752136654445554346554655531
Q gi|254780933|r 274 GRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINI----LTPEAKIFLSENESFLENIVLSDEARNIFSE 349 (947)
Q Consensus 274 ~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (947)
|+.+||+.++||..-+|||+||.+|+|+.+|++++.+-++..+.. ++.+++... .+.
T Consensus 327 g~~iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~-------------------~~~ 387 (876)
T KOG0435 327 GRAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNE-------------------QKA 387 (876)
T ss_pred CCEEEEEEECHHCCCCCCCEEEECCCCCCCHHHHHHCCCCEEEEEEEEEECCHHHHHC-------------------CCC
T ss_conf 7620179851013677761045366766410688863464068887432156244320-------------------225
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCC
Q ss_conf 001-5123344888998888764333210223222356665532444312221214542023334320024411214431
Q gi|254780933|r 350 FEG-LDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWD 428 (947)
Q Consensus 350 ~~G-~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~ 428 (947)
+.| +..++|..+|++.++..|......
T Consensus 388 ~tn~~~~q~a~~~l~~~~~~~g~g~~~v---------------------------------------------------- 415 (876)
T KOG0435 388 FTNLDIRQNAALKLFQFAERKGVGGYVV---------------------------------------------------- 415 (876)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEE----------------------------------------------------
T ss_conf 5415578889999999987437876232----------------------------------------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 1356764101112321235456310269838998876576234454203--45567877655541002568888310188
Q gi|254780933|r 429 KSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAI--DYYLSQDNDMTVKVRKMIKDGNISDLLKR 506 (947)
Q Consensus 429 ~~~~~wl~~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 506 (947)
.+ -++||.|||||||||||||.+|++|+.+.++.+++++..+. +....+..........++.||.|++..+|
T Consensus 416 -s~-----kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkR 489 (876)
T KOG0435 416 -SY-----KLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKR 489 (876)
T ss_pred -CC-----HHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCCCCCCC
T ss_conf -11-----335564322221689864587678886457588788546531235788996412365613568667996434
Q ss_pred CCCEECCEEECCCCCCCEECH--HHHHH------CCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 241002202044233320101--11100------0123455530124554--3210135677766530121133786852
Q gi|254780933|r 507 DEDVLDTWFSSALWPFASLGW--PEQTA------ELKTYYPTSVLVTGFD--ILFFWVARMMMMGLYFMKDAEGKGIEPF 576 (947)
Q Consensus 507 ~~DvlDtWfdSg~~p~~~l~~--p~~~~------e~~~~~P~d~~~~G~D--i~r~W~~~~l~~~~~l~~~~~~~~~~Pf 576 (947)
|+||||||+|| +|+| ++| |.+.+ --++|.|+|+|++|+. ++.--++| +.+.++.+...+...+||
T Consensus 490 ETDTMDTFvDS-sWYY--lRylDpkN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaR--F~~kFl~di~~~~t~EPF 564 (876)
T KOG0435 490 ETDTMDTFVDS-SWYY--LRYLDPKNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYAR--FIAKFLKDIGVVSTAEPF 564 (876)
T ss_pred CCCCCCHHHCC-CEEE--EEECCCCCCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHH--HHHHHHHHCCCCCCCCCH
T ss_conf 55541001003-1356--762378985454425565326861588554899999999999--999987552877688748
Q ss_pred CHHCCCCCCCCH------HH-------------------------------HHHHHHCCCCCCHHHHHCCCCHHHHHHHH
Q ss_conf 000014431000------12-------------------------------25543124565302332025403444543
Q gi|254780933|r 577 HIVYMHALVRDK------NG-------------------------------QKMSKSKGNVVDPIDVIDQYGADALRFYF 619 (947)
Q Consensus 577 k~v~~hG~vld~------~G-------------------------------~KMSKS~GNvidp~e~i~~yGaDalR~~l 619 (947)
+.++.||||+++ .| +|||||++|+|||.+++.+||+|++|+|+
T Consensus 565 ~~Li~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~i 644 (876)
T KOG0435 565 TKLITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYI 644 (876)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCCCCEEEECCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHCCHHHHHHH
T ss_conf 88875100034178627777627877766634776635753799503544887320235798989999884831778999
Q ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HHHHHCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HC
Q ss_conf 123355677543411011100001234443-3332024-44577676774333155567799999999888998753-10
Q gi|254780933|r 620 SIMAVQGRDINLDLERIAGYRNFITKFWNA-IRFSKMK-NARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMEN-HR 696 (947)
Q Consensus 620 ~~~~~~~~D~~fs~~~i~~~r~f~nKLwNa-~rf~~~~-~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~-~~ 696 (947)
++++++..+++|++..+.|..+++.|+|+. .+|+... ...........+.....++-+.+..|..+++|+++|+. +.
T Consensus 645 lf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~s 724 (876)
T KOG0435 645 LFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFS 724 (876)
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86178656666663324549999999999988777777527865565444433136789999999999875678888888
Q ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCE
Q ss_conf 01024577765310013688986476530567144432100014567640345677448999999974356667675653
Q gi|254780933|r 697 FNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGL 776 (947)
Q Consensus 697 f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~~~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~~~~~~s 776 (947)
++.|++.++.|.. .+.. ..|..+.. ++ ..-.+|+.+++||+|++||+|||+|+.|+.... .
T Consensus 725 lNtaIS~~m~ltN-~l~~----a~k~~~~h-~~--------~~~~al~~lv~mlaP~aPh~asE~Ws~l~~~~~-----~ 785 (876)
T KOG0435 725 LNTAISDMMGLTN-ALKK----ALKIVLVH-SP--------EFERALEALVIMLAPFAPHVASELWSALANDLS-----W 785 (876)
T ss_pred HHHHHHHHHHHHH-HHHH----HHHHHHHC-CH--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC-----C
T ss_conf 8899999998878-9987----52334114-73--------788999999999712575458999999842240-----1
Q ss_pred EEECCCCCCCC
Q ss_conf 66357878774
Q gi|254780933|r 777 LCHAQWPSLII 787 (947)
Q Consensus 777 i~~~~wP~~~~ 787 (947)
.....||++..
T Consensus 786 ~~~~~WP~vd~ 796 (876)
T KOG0435 786 VSDVKWPEVDP 796 (876)
T ss_pred HHCCCCCCCCH
T ss_conf 31167765784
No 20
>KOG0437 consensus
Probab=100.00 E-value=0 Score=803.06 Aligned_cols=752 Identities=22% Similarity=0.298 Sum_probs=550.6
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 978988999999987698644534--548998089972844999986543788967799999876708983567788154
Q gi|254780933|r 8 DFAFIEQKSVEKWNSVDAFRIDVA--PKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDH 85 (947)
Q Consensus 8 ~~~~iE~~~~~~W~~~~~f~~~~~--~~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~ 85 (947)
...+||+++|+.|+++++|+.+.. ...+.++|+..+||||+||.||+||+++.+..|+.+-|+||+|++|||||||||
T Consensus 13 ~L~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHC 92 (1080)
T KOG0437 13 SLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHC 92 (1080)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCEEEECCCCCCCCCEECCCEEEHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99999999987640211100357021055667516843650217602123010023548888999845854774033354
Q ss_pred CCHHHHHHHHHH------------------------------------------HHHHCCCCH------HHCC-----HH
Q ss_conf 540899999999------------------------------------------767459987------7779-----89
Q gi|254780933|r 86 AGIATQITVESR------------------------------------------LFAQSSLTR------EDIG-----RD 112 (947)
Q Consensus 86 ~GlPiE~~vek~------------------------------------------l~~~~~~~~------~~~g-----~~ 112 (947)
+||||-.-+.|- +.++.+..+ +.+| +.
T Consensus 93 TGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~ 172 (1080)
T KOG0437 93 TGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIK 172 (1080)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCHHHHH
T ss_conf 79701775799999999738999981443145652156620112310035205777760464026999998099988813
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCC--HHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHH
Q ss_conf 99999999999999999999998083664279811588--6799999999999998894331332022037767801486
Q gi|254780933|r 113 AFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMD--EGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDL 190 (947)
Q Consensus 113 ~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d--~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~ 190 (947)
+|.+. ..|..+|+....+++++||..+||+|+|+|+| |.|..+|.|||.+|.+.|.|..|+|...|||.++++|.||
T Consensus 173 ~F~d~-~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDH 251 (1080)
T KOG0437 173 KFADP-KHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDH 251 (1080)
T ss_pred CCCCH-HHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 16671-37888488377899998478864233013056654578899999998886078554760366367889855344
Q ss_pred HHHCCCCCCCEEEE--EEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCH----------
Q ss_conf 86541468766999--965304530001245555544245688716999826740101024444441000----------
Q gi|254780933|r 191 EVIQKEVDGNLWYV--RYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDY---------- 258 (947)
Q Consensus 191 Ev~~~~~~~~~~~i--k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~---------- 258 (947)
+...++..+|.-|. |..+.+.... ........+.|+++||.|||||||+|+++|+|+-.
T Consensus 252 DR~sGEgV~PqeytliKle~le~~p~---------~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~ 322 (1080)
T KOG0437 252 DRASGEGVGPQEYTLIKLEVLEPFPK---------ALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNET 322 (1080)
T ss_pred CCCCCCCCCCCEEEEEEEEECCCCHH---------HCCCCCCCEEEEEEHHCCCCCCCCCCCEEECCCCCEEEEEECCCC
T ss_conf 31238887863478999984146333---------315533320365410127753357642388688537768833774
Q ss_pred -------------------------------HHHHHCCCEEEECCC-CCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHH
Q ss_conf -------------------------------123111542332024-865732100003421223203212477855656
Q gi|254780933|r 259 -------------------------------RYKELIGKYATLPIV-GRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFE 306 (947)
Q Consensus 259 -------------------------------~y~~l~G~~~~~Pl~-~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~ 306 (947)
.+.+++|.-+..||. .++|-+++..-|..++|||+|.++|+.+|+||.
T Consensus 323 e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~ 402 (1080)
T KOG0437 323 EVFIATERAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFA 402 (1080)
T ss_pred EEEEEEHHHHHHCCHHHCCCCCCCCCCEEEECCHHHCCCCCCCCCHHHHEEEECCCEEEECCCCCEEEEECCCCCCHHHH
T ss_conf 27886068775200343145578655114433432217744685002110142230025505775047847899802567
Q ss_pred HHHH-------CCC-------CCCCEECCCCCCCCCCCC-------------CCCCCC------CCCCCCCCCCCCCCCC
Q ss_conf 6430-------465-------311101677752136654-------------445554------3465546555310015
Q gi|254780933|r 307 IAKR-------HGL-------GFINILTPEAKIFLSENE-------------SFLENI------VLSDEARNIFSEFEGL 353 (947)
Q Consensus 307 ~~~~-------~~l-------~~~~~~~~~g~~~~~~~~-------------~~~~~~------~~~~~~~~~~~~~~G~ 353 (947)
..+. ||| ++++|+.-.|-....+.. ..+.+. .-.-.+++..|+|.|.
T Consensus 403 al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~mlig~y~G~ 482 (1080)
T KOG0437 403 ALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLIGKYKGE 482 (1080)
T ss_pred HHHHHHHCCCCCCCCHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf 77766415200377802302445203523663316699999987305811678888766788987640362897144650
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCEEEEEEHHHEECCC--CCHHHHHHHHHCCCCCEECCCCCHH
Q ss_conf 123344888998888764333-2102232223566655324443122212145--4202333432002441121443113
Q gi|254780933|r 354 DCFAARSKIVSLLEKSNLLDK-TDSYRHIVPHCERSGVTIEPCITEQWYLDAK--VLAESAIRSAKNGCLSFIPQSWDKS 430 (947)
Q Consensus 354 ~v~~a~~~ii~~L~~~g~l~~-~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~--~~~~~~l~~~~~~~i~~~P~~~~~~ 430 (947)
+|.++++.|-.+|.+.|.++. .|+=. +.-+|||+.+|..++|||||+|. .|++.+.+++++ ++-+-+..++.
T Consensus 483 KVe~~K~~i~~~li~~g~a~~y~EPEk---qVmSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cLe~--l~~f~dEtR~~ 557 (1080)
T KOG0437 483 KVEDAKPKIKTDLIETGDALKYNEPEK---QVMSRSGDECIVALCDQWYLDYGEAEWKKQAKECLEN--LNTFSDETRNG 557 (1080)
T ss_pred CHHHHHHHHHHHHHHCCCCEEECCCCH---HHHCCCCCCEEEEECCCHHHHCCCHHHHHHHHHHHHH--HHCCCHHHHHH
T ss_conf 077654678988885033256337502---3313578825999413022124729899999999865--53069788877
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCE
Q ss_conf 56764101112321235456310269838998876576234454203455678776555410025688883101882410
Q gi|254780933|r 431 YYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDV 510 (947)
Q Consensus 431 ~~~wl~~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Dv 510 (947)
|.+-|++++.|+|||..+.||+|| | |.++.|++++|+++|+++....... +...........+..+++|+ ++|
T Consensus 558 fE~tLdWL~~wacsRsyGLGTrlP-W---D~qyLvESLSDSTIYmAyYTvaHll-~~d~~g~~~~plgi~~~QMt--deV 630 (1080)
T KOG0437 558 FEDTLDWLGQWACSRSYGLGTRLP-W---DEQYLVESLSDSTIYMAYYTVAHLL-HRDLYGKVEGPLGIKPDQMT--DEV 630 (1080)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCC-C---CHHHHHHHCCHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCHHHCC--HHH
T ss_conf 888889987510120116777788-7---6788877603128999999999998-77640677665778946547--898
Q ss_pred ECCEEECCCCCCCEECHH-----HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCC
Q ss_conf 022020442333201011-----110001234555301245543210135677766530121133786852000014431
Q gi|254780933|r 511 LDTWFSSALWPFASLGWP-----EQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALV 585 (947)
Q Consensus 511 lDtWfdSg~~p~~~l~~p-----~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~v 585 (947)
.|--|--+.-|- ...-| .-+.||+||||.|++++|+|++.+|+.++|..|++++... .+| |.+.++||+
T Consensus 631 wdYvF~~~~~~k-~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k----~WP-kgiraNGHL 704 (1080)
T KOG0437 631 WDYVFLNEPYPK-NTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEK----KWP-KGIRANGHL 704 (1080)
T ss_pred HHHHHCCCCCCC-CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEHHHHCCCC----CCC-CCCCCCCEE
T ss_conf 878650699876-77840999999997631003013442342135231367554002315400----286-531117667
Q ss_pred CCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 00012255431245653023320254034445431233556775434110111000012344433332024445776767
Q gi|254780933|r 586 RDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSVSFV 665 (947)
Q Consensus 586 ld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~~ 665 (947)
+ -+++|||||-||+.+..+.|+++|||++|+.|+..+..-+|.||.+....+ ++.+|++-...+.-.....+ ...
T Consensus 705 m-LNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaGD~veDANF~ea~AnA---aILRLyt~~ew~eEm~~~~s-~Lr 779 (1080)
T KOG0437 705 M-LNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEANANA---AILRLYTYVEWIEEMCENRS-SLR 779 (1080)
T ss_pred E-ECCHHCCCCCCCEEEHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHCCCH---HHHHHHHHHHHHHHHHHHHH-HHC
T ss_conf 7-331220545677245999898738752045320226874343066650237---99999999999999974377-652
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 74333155567799999999888998753100102457-77653100136889864765305671444321000145676
Q gi|254780933|r 666 PQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAV-LYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLY 744 (947)
Q Consensus 666 ~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~-i~~F~~~~~~~~Yie~~K~~l~~~~~~~~~~~~~~l~~vl~ 744 (947)
........||.+.+++|.+|....++|+...|.+|++. .|+|. .--|+|-|++- . .. -...+...++
T Consensus 780 tGp~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~q--aArD~Yrel~g------~-~m---h~dLv~r~ie 847 (1080)
T KOG0437 780 TGPASTFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDLQ--AARDMYRELCG------E-GM---HRDLVFRFIE 847 (1080)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHC------C-CC---CHHHHHHHHH
T ss_conf 48627778999998999999999999888679999985058899--88999999704------5-53---1899999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 403456774489999999743566676756536635787877477898999999999999-999888
Q gi|254780933|r 745 NVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLIIDDSESIEEVNWIIDLIS-KVRSIR 810 (947)
Q Consensus 745 ~~l~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~~~d~~~~~~~~~~~~ii~-~iR~~R 810 (947)
+..+||+||+||+||.||+.+.+. ++++...||..+..|+.+...-..+++.+. .+|.+.
T Consensus 848 tqtlLLaPi~Ph~aeyiw~~~~~~------~~~v~~~wP~~s~~~e~~~~~~~yl~~~l~r~~~~l~ 908 (1080)
T KOG0437 848 TQTLLLAPICPHLAEYIWRTVLKK------NFSVNVGWPFVSPPDEKLGSSALYLKRTLKRLRAELE 908 (1080)
T ss_pred HHHHHHHCCCHHHHHHHHHHHCCC------CCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999987412527999999996168------8554268997897788754657999999999999988
No 21
>cd00817 ValRS_core This is the catalytic core domain of valine amino-acyl tRNA synthetases (ValRS) . This enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=0 Score=743.78 Aligned_cols=363 Identities=59% Similarity=1.071 Sum_probs=327.7
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 80899728449999865437889677999998767089835677881545408999999997674599877779899999
Q gi|254780933|r 37 GVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIE 116 (947)
Q Consensus 37 ~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~ 116 (947)
|+|+|++||||+||.|||||+++++++|+++||+||+|++|+|++|||+||||||.+|||+.+.+ +..+.++++++|++
T Consensus 1 k~f~itTpipYaNG~~HiGHa~~~i~aDv~aRy~rm~G~~V~f~~G~DeHGlpie~~~ek~~~~~-~~~~~~~~~~~f~~ 79 (363)
T cd00817 1 EPFVIDTPPPNVTGSLHIGHALTNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIE-GKTRHDLGREEFLE 79 (363)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCCHHHCCHHHHHH
T ss_conf 98599489998888613527898999999999998169977887845756689999999983605-66500079899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 99999999999999999980836642798115886799999999999998894331332022037767801486865414
Q gi|254780933|r 117 KVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKE 196 (947)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~ 196 (947)
.|++|++++.+.+++++++||+++||++.++|+||.|.++||++|.+|+++|+||++.++|+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lg~~~D~~~~~rT~d~~h~~~vq~~f~~l~~~G~iY~~~~~v~~~---------------- 143 (363)
T cd00817 80 KCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSKAVQEAFVRLYEKGLIYRANRLVNWV---------------- 143 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEECCE----------------
T ss_conf 9999999999999999998330116575034377679999999999999888976368245737----------------
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCC
Q ss_conf 68766999965304530001245555544245688716999826740101024444441000123111542332024865
Q gi|254780933|r 197 VDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRL 276 (947)
Q Consensus 197 ~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~ 276 (947)
T Consensus 144 -------------------------------------------------------------------------------- 143 (363)
T cd00817 144 -------------------------------------------------------------------------------- 143 (363)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 73210000342122320321247785565664304653111016777521366544455543465546555310015123
Q gi|254780933|r 277 IPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCF 356 (947)
Q Consensus 277 ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 356 (947)
T Consensus 144 -------------------------------------------------------------------------------- 143 (363)
T cd00817 144 -------------------------------------------------------------------------------- 143 (363)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHH
Q ss_conf 34488899888876433321022322235666553244431222121454202333432002441121443113567641
Q gi|254780933|r 357 AARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLE 436 (947)
Q Consensus 357 ~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~ 436 (947)
|+++.++|||+++.++++++++.++++.+.|.|+++++++.+||+
T Consensus 144 -----------------------------------ve~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~ 188 (363)
T cd00817 144 -----------------------------------IEPLLKPQWFVKVKDLAKAALEAVKEGDIKFVPERMEKRYEDWLE 188 (363)
T ss_pred -----------------------------------EEEEECCEEEEECHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHH
T ss_conf -----------------------------------799877616898778899999999629977857899999999985
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCEEE
Q ss_conf 01112321235456310269838998876576234454203455678776555410025688883101882410022020
Q gi|254780933|r 437 NIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFS 516 (947)
Q Consensus 437 ~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtWfd 516 (947)
+++||||||||+||+|||+|+|+++...+.......... .......+..++..+.|++||||||||
T Consensus 189 ~l~Dw~ISR~~~WG~piP~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~dv~dvWfd 254 (363)
T cd00817 189 NIRDWCISRQLWWGHRIPAWYCEDCGHWVVAREEEEAVD--------------PAIPEACCPCGSEELEQDTDVLDTWFS 254 (363)
T ss_pred CCCCCCCCHHCCCCCCCCEEECCCCCCEEECCCHHHHHH--------------HHHHCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 157653310001366666146278984770673364111--------------243204788872113036776530445
Q ss_pred CCCCCCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHH
Q ss_conf 44233320101111000123455530124554321013567776653012113378685200001443100012255431
Q gi|254780933|r 517 SALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKS 596 (947)
Q Consensus 517 Sg~~p~~~l~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS 596 (947)
|++||+++++||+++.+++.+||+|++++|+||+|||+++|++.+..+. ++.||++|++||||++.+|+|||||
T Consensus 255 s~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDIirfW~~~~~~~~~~l~------~~~P~~~v~~HG~vl~~~G~KMSKS 328 (363)
T cd00817 255 SSLWPFSTLGWPEETKDLKKFYPTSLLPTGHDIIFFWVARMIMRGLELT------GKLPFKEVYIHGLVRDEDGRKMSKS 328 (363)
T ss_pred HCCCCHHHHCCCCCCCHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHC------CCCCCCEEEECCEEECCCCCCCCCC
T ss_conf 2477225508974331454078763787623887469999999876624------8988656687862899998875788
Q ss_pred CCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 24565302332025403444543123355677543
Q gi|254780933|r 597 KGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINL 631 (947)
Q Consensus 597 ~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~f 631 (947)
+||+|||.+++++||+|++|||+++.+++|+|.|+
T Consensus 329 ~GNvv~p~~~l~~yg~D~lRy~l~~~~~~~~D~~~ 363 (363)
T cd00817 329 LGNVIDPLDVIDGYGADALRFTLASAASQGRDINL 363 (363)
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 99866989999877927999999952998777898
No 22
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=733.71 Aligned_cols=491 Identities=21% Similarity=0.317 Sum_probs=379.1
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHH
Q ss_conf 80899728449999865437889677-99999876708983567788154540899999999767459987777989999
Q gi|254780933|r 37 GVFCIAMPPPNVTGSLHMGHAFNTTI-QDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFI 115 (947)
Q Consensus 37 ~~f~~~~ppP~~nG~lHiGH~~~~t~-~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~ 115 (947)
.+|+++.|+||+||.|||||+++.++ .||++||+||+|++|+|++|||+||+|||.+++|+ +.++
T Consensus 3 ~k~~iTt~~Py~nG~lHiGH~~~~~l~aDi~aRy~R~~G~~v~~~~GtD~hG~~i~~~A~k~-----g~~p--------- 68 (558)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSYLPADVYARYQRLKGNEVLFVSGSDEHGTPIELEAEKE-----GVSP--------- 68 (558)
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC-----CCCH---------
T ss_conf 51898479988889855231114198999999999837998797584064749999999985-----9999---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCC
Q ss_conf 99999999999999999998083664279811588679999999999999889433133202203776780148686541
Q gi|254780933|r 116 EKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQK 195 (947)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~ 195 (947)
+++++++.+.++++++++|+++|| .+.|++|.+.++|+++|.+|+++|+||++.++++|||.|+|.|+|..|+
T Consensus 69 ---~e~~~~~~~~~~~~~~~lgis~D~--f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~~fl~d~~v~-- 141 (558)
T PRK12268 69 ---QELADKYHEEHKEDFEKLGISYDN--YTRTTSPEHHELVQEFFLKLYENGYIEKKTIEQAYCPSDGRFLPDRYVE-- 141 (558)
T ss_pred ---HHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHC--
T ss_conf ---999999999999999981983776--8668988999999999999998899330135343684112313123315--
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCC
Q ss_conf 46876699996530453000124555554424568871699982674010102444444100012311154233202486
Q gi|254780933|r 196 EVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGR 275 (947)
Q Consensus 196 ~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~ 275 (947)
|+
T Consensus 142 ---------------------------------------------------------------------G~--------- 143 (558)
T PRK12268 142 ---------------------------------------------------------------------GT--------- 143 (558)
T ss_pred ---------------------------------------------------------------------CC---------
T ss_conf ---------------------------------------------------------------------40---------
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 57321000034212232032124778556566430465311101677752136654445554346554655531001512
Q gi|254780933|r 276 LIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDC 355 (947)
Q Consensus 276 ~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 355 (947)
||.++.+|- + |.. + +.+|..
T Consensus 144 ---------------------cP~c~~~~~-----~-----------Gd~-----------c-------e~cg~~----- 163 (558)
T PRK12268 144 ---------------------CPYCGYEKA-----R-----------GDQ-----------C-------DNCGAL----- 163 (558)
T ss_pred ---------------------CCCCCCCCC-----C-----------CCH-----------H-------HHCCCC-----
T ss_conf ---------------------677687435-----6-----------732-----------5-------324764-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHH
Q ss_conf 33448889988887643332102232223566655324443122212145420233343200244112144311356764
Q gi|254780933|r 356 FAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWL 435 (947)
Q Consensus 356 ~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl 435 (947)
.++. +| .-|+|++||++++++.++|||+++.++++++++.+++ ..++|+++++.+.+||
T Consensus 164 ~~~~-----dl--------------i~p~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~--~~~~p~~~~~~~~~~l 222 (558)
T PRK12268 164 LDPT-----DL--------------INPRSKISGSTPEFRETEHFFLDLPAFQEALRKWIES--GTDWPPNVLNFTLNWL 222 (558)
T ss_pred CCHH-----HH--------------CCCCCCCCCCCCEEEECCCEEECCHHHHHHHHHHHHC--CCCCCHHHHHHHHHHH
T ss_conf 7857-----72--------------4885677899444773453021418778999999853--8877889999999998
Q ss_pred -HCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCE
Q ss_conf -1011123212354563102698389988765762344542034556787765554100256888831018824100220
Q gi|254780933|r 436 -ENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTW 514 (947)
Q Consensus 436 -~~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtW 514 (947)
++++|||||||++||+|||++.+++. |+.||
T Consensus 223 ~~~l~D~~ISR~~~WGipiP~~~~~~~------------------------------------------------~iyVW 254 (558)
T PRK12268 223 KEGLKPRAITRDLPWGIPIPFEGAEGK------------------------------------------------VFYVW 254 (558)
T ss_pred HCCCCCCCCCCCCCCCEECCCCCCCCC------------------------------------------------EEEEE
T ss_conf 633756545553878657885556896------------------------------------------------79886
Q ss_pred EECCCCCCCEE-CHH---HHHHCCCCCCCCC----CCCCCCCCCCC----HHHHHHHHHHHCCCCCCCCCCCCCCHHCCC
Q ss_conf 20442333201-011---1100012345553----01245543210----135677766530121133786852000014
Q gi|254780933|r 515 FSSALWPFASL-GWP---EQTAELKTYYPTS----VLVTGFDILFF----WVARMMMMGLYFMKDAEGKGIEPFHIVYMH 582 (947)
Q Consensus 515 fdSg~~p~~~l-~~p---~~~~e~~~~~P~d----~~~~G~Di~r~----W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~h 582 (947)
||+-+-+.++. .|. .....+..|||.+ +++.|+||++| |++.|+..+. ..++| +.+++|
T Consensus 255 ~Da~~~yis~~~~~~~~~~~~~~~~~~W~~~~~~~~~f~GkDii~FH~v~wpa~l~a~~~--------~~~lP-~~i~~~ 325 (558)
T PRK12268 255 FDAPIGYISATKEWAKRKGDPEAWKEFWLDSDTKYYYFIGKDNIPFHSVIWPAMLLGSGE--------PYKLP-TAIVSS 325 (558)
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC--------CCCCC-CEEEEE
T ss_conf 578722034336545416985679872789984277643666543478799999973379--------87788-778775
Q ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC--HHHHHHHHH-HHHHHHCCCCC
Q ss_conf 431000122554312456530233202540344454312335567754341101110--000123444-33332024445
Q gi|254780933|r 583 ALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGY--RNFITKFWN-AIRFSKMKNAR 659 (947)
Q Consensus 583 G~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~--r~f~nKLwN-a~rf~~~~~~~ 659 (947)
||++. +|+|||||+||+|+|.+++++||+|++||||++.++.++|++||++.+... ..++|++|| +.|.+.+....
T Consensus 326 g~~~~-~G~KmSKS~Gnvi~p~~~i~~yg~D~lRy~L~~~~~~~~D~~fs~~~~~~~~N~dL~~~~gNl~~R~~~~~~k~ 404 (558)
T PRK12268 326 EYLTY-EGQKFSKSRGWGIWVDDALERLPPDYLRYYLAANAPENSDTDFTWEEFIRRVNSELADKYGNLVNRVLSFIEKN 404 (558)
T ss_pred EEEEE-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56874-68411455788779899998749077789988548888888879999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHH-HHCCCHHHHHHHHHH
Q ss_conf 7767677433315556779999999988899875310010245777653100136889864765-305671444321000
Q gi|254780933|r 660 HSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSI-LNQKDSELVSETLSC 738 (947)
Q Consensus 660 ~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~-l~~~~~~~~~~~~~~ 738 (947)
..............|+|+++++++++++++++|++|+|++|++.|++|+ .+||+|++..+|. +.+.+.+....++.+
T Consensus 405 ~~g~~p~~~~~~~~d~~l~~~~~~~~~~v~~~~e~~~~~~Al~~i~~~~--~~~N~y~~~~~PW~l~k~d~~~~~~vl~~ 482 (558)
T PRK12268 405 FGGEVPEPGELGEEDEELLEKFQELFKEVGEHYEAIEFKKALEEIMELA--RLANKYLNEKAPWKLAKTDPERAAAVLYT 482 (558)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHHHHHHCCCHHHHCCCHHHHHHHHHH
T ss_conf 5897898767985659999999999999999997517999999999999--99999998379854316899999999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 14567640345677448999999974356
Q gi|254780933|r 739 FSYVLYNVCKLLHPIIPFVTEDLYSHVSP 767 (947)
Q Consensus 739 l~~vl~~~l~ll~P~~PfitEeiw~~l~~ 767 (947)
+..+++.+++||+||||++||+||..|+-
T Consensus 483 ~l~~lr~~~ilL~P~mP~~se~i~~~Lg~ 511 (558)
T PRK12268 483 ALNLVKLLAILLYPFLPFSAEKIWEMLGL 511 (558)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHCCC
T ss_conf 99999999999867403999999998499
No 23
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=718.22 Aligned_cols=467 Identities=24% Similarity=0.380 Sum_probs=390.3
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 80899728449999865437889677999998767089835677881545408999999997674599877779899999
Q gi|254780933|r 37 GVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIE 116 (947)
Q Consensus 37 ~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~ 116 (947)
++|+|+.||||+||.|||||+++++.+||++||+||+|++|+|++|+|+||+|||.+++++ +.++
T Consensus 1 k~~~it~p~Py~nG~lHlGHa~~~~~~Dv~~Ry~R~~G~~v~~~~GtD~hg~~i~~~A~~~-----g~~p---------- 65 (512)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIERKAEEA-----GISP---------- 65 (512)
T ss_pred CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC-----CCCH----------
T ss_conf 9789968999889973446358799999999999955997074687177519999999985-----9999----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 99999999999999999980836642798115886799999999999998894331332022037767801486865414
Q gi|254780933|r 117 KVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKE 196 (947)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~ 196 (947)
.++++++.+.++++++++|+++| +...|+|+.+.+.|+++|.+|+++|+||++..+++|||.|++-+.+.++
T Consensus 66 --~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~c~~~~~~~~~---- 137 (512)
T PRK11893 66 --QELADRNSASFKRLWEALNISYD--DFIRTTDERHKEAVQEIFQRLLANGDIYLGKYSGWYCVRCEEFKTESEA---- 137 (512)
T ss_pred --HHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHH----
T ss_conf --99999999999999998099888--7877998799999999999997679774324443226886444577772----
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCC
Q ss_conf 68766999965304530001245555544245688716999826740101024444441000123111542332024865
Q gi|254780933|r 197 VDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRL 276 (947)
Q Consensus 197 ~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~ 276 (947)
.|. .
T Consensus 138 -------------------------------------------------------------------~~~---------~ 141 (512)
T PRK11893 138 -------------------------------------------------------------------RLG---------E 141 (512)
T ss_pred -------------------------------------------------------------------CCC---------C
T ss_conf -------------------------------------------------------------------366---------5
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 73210000342122320321247785565664304653111016777521366544455543465546555310015123
Q gi|254780933|r 277 IPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCF 356 (947)
Q Consensus 277 ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 356 (947)
T Consensus 142 -------------------------------------------------------------------------------- 141 (512)
T PRK11893 142 -------------------------------------------------------------------------------- 141 (512)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHH
Q ss_conf 34488899888876433321022322235666553244431222121454202333432002441121443113567641
Q gi|254780933|r 357 AARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLE 436 (947)
Q Consensus 357 ~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~ 436 (947)
..-|+|.+||++++.+..+|||++++++++.+.+.++++...+.|+.+++.+.+|++
T Consensus 142 -----------------------~~~~~~~~~g~~~e~~~~~~~flkl~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~ 198 (512)
T PRK11893 142 -----------------------DGCPRCPIHGKPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPESRRNEVINFVK 198 (512)
T ss_pred -----------------------CCCCCCCCCCCCCEEEECCCCEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf -----------------------788655557997768724761120505467799997249865186999999999985
Q ss_pred C-CCCCCCCCCC-CCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCE
Q ss_conf 0-1112321235-4563102698389988765762344542034556787765554100256888831018824100220
Q gi|254780933|r 437 N-IQPWCISRQI-WWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTW 514 (947)
Q Consensus 437 ~-~~DW~ISRqr-~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtW 514 (947)
+ ++|||||||+ .||+|+|- + +..|++||
T Consensus 199 ~~l~d~~ISR~~~~WGi~vP~----~----------------------------------------------~~~~~yvW 228 (512)
T PRK11893 199 SGLKDLSISRTNFDWGIPVPG----D----------------------------------------------PKHVIYVW 228 (512)
T ss_pred CCCCCCCEECCCCCCCCCCCC----C----------------------------------------------CCCCEEEH
T ss_conf 778766152567878998888----8----------------------------------------------88620112
Q ss_pred EECCCCCCCEECHH--HHHHCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCH
Q ss_conf 20442333201011--110001234555301245543210----135677766530121133786852000014431000
Q gi|254780933|r 515 FSSALWPFASLGWP--EQTAELKTYYPTSVLVTGFDILFF----WVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDK 588 (947)
Q Consensus 515 fdSg~~p~~~l~~p--~~~~e~~~~~P~d~~~~G~Di~r~----W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~ 588 (947)
|||.+.+.+++++. .+...++.|||.|++..|+|+++| |++.|++.+. ..| +++++|||+..
T Consensus 229 fda~~~y~s~~~~~~~~~~~~~~~~w~~~vh~~G~Dii~fH~~~~~a~l~~~~~----------~~p-~~~~~hg~l~~- 296 (512)
T PRK11893 229 FDALLNYLTALGYDEPDLEELFRKYWPADVHLIGKDILRFHAVYWPAFLMAAGL----------PLP-KRVFAHGFLTN- 296 (512)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCC----------CCC-CCCCCCEEEEE-
T ss_conf 531355677645887656478984487504323665120138889999986699----------988-63431114887-
Q ss_pred HHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH--HHHHHHHH-HHHHHCCCCCCCCCCC
Q ss_conf 12255431245653023320254034445431233556775434110111000--01234443-3332024445776767
Q gi|254780933|r 589 NGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRN--FITKFWNA-IRFSKMKNARHSVSFV 665 (947)
Q Consensus 589 ~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r~--f~nKLwNa-~rf~~~~~~~~~~~~~ 665 (947)
+|+|||||+||+|+|.|++++||+|++||||++.++.++|.+|+++.+...+| +++++||. .|...+..........
T Consensus 297 ~G~KmSKS~Gn~I~~~d~l~~yg~D~lR~~L~~~~p~~~D~~Fs~~~f~~~~N~~l~~~~gNl~~R~~~~~~~~~~~~~p 376 (512)
T PRK11893 297 DGQKMSKSLGNVIDPFDLVDKFGVDAVRYFLLREIPFGQDGDFSEEAFINRINADLANDLGNLLSRTLSMIAKYFDGKVP 376 (512)
T ss_pred CCCEECCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 57150134787589999999859504028776328877787878999998975899999999999999999875178788
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 743331555677999999998889987531001024577765310013688986476-5305671444321000145676
Q gi|254780933|r 666 PQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKS-ILNQKDSELVSETLSCFSYVLY 744 (947)
Q Consensus 666 ~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~-~l~~~~~~~~~~~~~~l~~vl~ 744 (947)
........|+||++++++++.+++++|++|+|+.|++.+++|++. ||+|++..|| .+.+++.+...++..++..+++
T Consensus 377 ~~~~~~~~d~~~~~~~~~~~~~v~~~~e~~~~~~a~~~i~~~~~~--~N~y~~~~~PW~l~k~d~~~~~~il~~~~~~~~ 454 (512)
T PRK11893 377 EPGEFSEADAALLEKADAALEQVREAMDNFAFHKALEAILELAAE--ANKYIDEQAPWSLAKTDPERLATVLYTLLESLR 454 (512)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 866588768999999999999999999712599999999999999--999988478753315899999999999999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 4034567744899999997435666
Q gi|254780933|r 745 NVCKLLHPIIPFVTEDLYSHVSPQD 769 (947)
Q Consensus 745 ~~l~ll~P~~PfitEeiw~~l~~~~ 769 (947)
.+++||+|||||+||+||+.|+-..
T Consensus 455 ~l~ill~P~~P~~ae~l~~~Lg~~~ 479 (512)
T PRK11893 455 IIAVLLQPVMPELSAKILDQLGLEE 479 (512)
T ss_pred HHHHHHHCCCCHHHHHHHHHCCCCC
T ss_conf 9999985843599999999849998
No 24
>cd00818 IleRS_core This is the catalytic core domain of isoleucine amino-acyl tRNA synthetases (IleRS) . This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=0 Score=680.76 Aligned_cols=338 Identities=34% Similarity=0.642 Sum_probs=312.7
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 80899728449999865437889677999998767089835677881545408999999997674599877779899999
Q gi|254780933|r 37 GVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIE 116 (947)
Q Consensus 37 ~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~ 116 (947)
|+|+|++||||+||.|||||+++++++|+++||+||+|++|+|++|+|+||+|||.+|+|+++.+.+..++++++++|++
T Consensus 1 p~~~~~~~pPYaNg~pHiGHa~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~pIe~~a~k~~~~~~~~~~~~~~~~~f~~ 80 (339)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFRA 80 (339)
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHH
T ss_conf 95599589988578734558899999999999998069988778851440399999999964898730476559999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 99999999999999999980836642798115886799999999999998894331332022037767801486865414
Q gi|254780933|r 117 KVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKE 196 (947)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~ 196 (947)
.|++++.++.+.++++++++|++.||++.|.|+++.|.+.++++|.+|+++|+||+|.++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~----------------- 143 (339)
T cd00818 81 KCREFALRYIDEQEETFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLYEKGLLYRGYKVVPW----------------- 143 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCEEECC-----------------
T ss_conf 999999999999999999837351477771216889999999999999988886267605368-----------------
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCC
Q ss_conf 68766999965304530001245555544245688716999826740101024444441000123111542332024865
Q gi|254780933|r 197 VDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRL 276 (947)
Q Consensus 197 ~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~ 276 (947)
T Consensus 144 -------------------------------------------------------------------------------- 143 (339)
T cd00818 144 -------------------------------------------------------------------------------- 143 (339)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 73210000342122320321247785565664304653111016777521366544455543465546555310015123
Q gi|254780933|r 277 IPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCF 356 (947)
Q Consensus 277 ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 356 (947)
T Consensus 144 -------------------------------------------------------------------------------- 143 (339)
T cd00818 144 -------------------------------------------------------------------------------- 143 (339)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCC-HHHHHHH
Q ss_conf 344888998888764333210223222356665532444312221214542023334320024411214431-1356764
Q gi|254780933|r 357 AARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWD-KSYYEWL 435 (947)
Q Consensus 357 ~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~-~~~~~wl 435 (947)
|++++.++|||+++.++++++++.++ +.+|+|+..+ .++.+|+
T Consensus 144 ----------------------------------p~~~~~~~~~F~~l~~~~~~ll~~~~--~~~~~p~~~~~~~l~~~~ 187 (339)
T cd00818 144 ----------------------------------PLIYRATPQWFIRVEKLKDRLLEAND--KVNWIPEWVKEGRFGNWL 187 (339)
T ss_pred ----------------------------------CCCCEECCCEEEECHHHHHHHHHHHH--CCCEECCHHHHHHHHHHH
T ss_conf ----------------------------------76005815679986899999998775--387378610664999997
Q ss_pred HCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCEE
Q ss_conf 10111232123545631026983899887657623445420345567877655541002568888310188241002202
Q gi|254780933|r 436 ENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWF 515 (947)
Q Consensus 436 ~~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtWf 515 (947)
++++||||||||+||+|||+|+|++|+.+. ++|++|||||||
T Consensus 188 ~~l~Dw~ISR~~~WGipvP~w~~~~~~~~~--------------------------------------~~~~~dv~yVWf 229 (339)
T cd00818 188 ENRRDWCISRQRYWGTPIPVWYSEDCGEVL--------------------------------------VRRVPDVLDVWF 229 (339)
T ss_pred HCCCCCEEEECCCCCCCCCEEECCCCCCCC--------------------------------------CCCCCCHHHHHH
T ss_conf 168565044026667534635648998321--------------------------------------003650177776
Q ss_pred ECCCCCCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHH
Q ss_conf 04423332010111100012345553012455432101356777665301211337868520000144310001225543
Q gi|254780933|r 516 SSALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSK 595 (947)
Q Consensus 516 dSg~~p~~~l~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSK 595 (947)
||++.|+++++||+++.++..+||+|+++.|+||+|+||..+++.+..+. +..||++|++|||+++++|+||||
T Consensus 230 Da~~~~~~~~~~~~~~~~~~~~~p~~~~~~GkDi~~~~f~~~~~~~~~~~------~~~P~~~v~~hg~~l~~~G~KMSK 303 (339)
T cd00818 230 DSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTALF------GKAPYKNVIVHGFVLDEDGRKMSK 303 (339)
T ss_pred HCCCCHHHHCCCCCCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHC------CCCCCCEEEECCEEECCCCCCCCC
T ss_conf 35624898728986431341387660566063312337999999878854------899852148898499999866278
Q ss_pred HCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 124565302332025403444543123355677543
Q gi|254780933|r 596 SKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINL 631 (947)
Q Consensus 596 S~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~f 631 (947)
|+||+|+|.+++++||||++||||++.+++++|.+|
T Consensus 304 S~GnvI~p~~~l~~y~~D~lRyyl~~~~~~~~D~~F 339 (339)
T cd00818 304 SLGNVVDPQEVIDKYGADALRLWVASSDVYAEDLRF 339 (339)
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 899878989999876947999999916888889999
No 25
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=665.72 Aligned_cols=463 Identities=24% Similarity=0.375 Sum_probs=382.8
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHH
Q ss_conf 98089972844999986543788967799999876708983567788154540899999999767459987777989999
Q gi|254780933|r 36 SGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFI 115 (947)
Q Consensus 36 ~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~ 115 (947)
+++|.++.|+||+||.|||||+++++++||++||+||+|++|+|+.|+|+||+||+.+++++ |.++
T Consensus 3 ~k~~~iTt~ipY~Ng~~HiGHa~~~i~aDv~aRy~R~~G~~v~f~~GtDehG~kI~~~A~~~-----g~tP--------- 68 (644)
T PRK12267 3 KKTFYITTPIYYPSGKLHIGHAYTTIAADVLARYKRLQGYDVFFLTGTDEHGQKIQQKAEEA-----GITP--------- 68 (644)
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHC-----CCCH---------
T ss_conf 99989968998889985545348789999999999846997598487687529999999985-----9999---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCC
Q ss_conf 99999999999999999998083664279811588679999999999999889433133202203776780148686541
Q gi|254780933|r 116 EKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQK 195 (947)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~ 195 (947)
+++++++.+.+++++++||+++| +..+|+|+.+.+.||++|.+|+++|+||++.+.++||+.|++-+++.|++.
T Consensus 69 ---~e~~d~~~~~~~~~~~~l~Is~D--~f~rTt~~~h~~~vq~if~~L~~kG~Iy~~~~~~~Yc~~ce~f~~~~~l~d- 142 (644)
T PRK12267 69 ---QEYVDEISAGFKDLWDKLDISYD--KFIRTTDERHKKVVQKVFEKLYDQGDIYLGEYEGWYCVSCETFFTESQLVD- 142 (644)
T ss_pred ---HHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHCCC-
T ss_conf ---99999999999999998699678--785489889999999999999988997866551232587543336244045-
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCC
Q ss_conf 46876699996530453000124555554424568871699982674010102444444100012311154233202486
Q gi|254780933|r 196 EVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGR 275 (947)
Q Consensus 196 ~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~ 275 (947)
T Consensus 143 -------------------------------------------------------------------------------- 142 (644)
T PRK12267 143 -------------------------------------------------------------------------------- 142 (644)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 57321000034212232032124778556566430465311101677752136654445554346554655531001512
Q gi|254780933|r 276 LIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDC 355 (947)
Q Consensus 276 ~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 355 (947)
.
T Consensus 143 -------------~------------------------------------------------------------------ 143 (644)
T PRK12267 143 -------------G------------------------------------------------------------------ 143 (644)
T ss_pred -------------C------------------------------------------------------------------
T ss_conf -------------7------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHH-HH
Q ss_conf 33448889988887643332102232223566655324443122212145420233343200244112144311356-76
Q gi|254780933|r 356 FAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYY-EW 434 (947)
Q Consensus 356 ~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~-~w 434 (947)
+.|..||.+++.+-.++||+++.++.+++++.++++.-.+.|+.+++... +|
T Consensus 144 ---------------------------g~cp~cg~~~e~~~ee~yffkL~~~~~~L~~~~~~~p~~i~p~~~~ne~~~~~ 196 (644)
T PRK12267 144 ---------------------------GKCPDSGHEVELVKEESYFFRMSKYADRLLEFYEENPDFIQPESRKNEMLNNF 196 (644)
T ss_pred ---------------------------CCCCCCCCCCEEECCCCEEEEHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHH
T ss_conf ---------------------------86877899764640565144346678999999960997467625887999999
Q ss_pred HH-CCCCCCCCCCC-CCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEC
Q ss_conf 41-01112321235-45631026983899887657623445420345567877655541002568888310188241002
Q gi|254780933|r 435 LE-NIQPWCISRQI-WWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLD 512 (947)
Q Consensus 435 l~-~~~DW~ISRqr-~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlD 512 (947)
++ +++||||||++ +||+|||. + +..|++
T Consensus 197 l~~gL~D~~ISR~~~~WGipvP~----d----------------------------------------------~~~v~Y 226 (644)
T PRK12267 197 IKPGLEDLAVSRTSFDWGIPVPS----D----------------------------------------------PKHVVY 226 (644)
T ss_pred HHCCCCCCCEECCCCCCCCCCCC----C----------------------------------------------CCEEEE
T ss_conf 85778554302477888885789----8----------------------------------------------760799
Q ss_pred CEEECCCCCCCEECHHHHH-HCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 2020442333201011110-001234555301245543210----13567776653012113378685200001443100
Q gi|254780933|r 513 TWFSSALWPFASLGWPEQT-AELKTYYPTSVLVTGFDILFF----WVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRD 587 (947)
Q Consensus 513 tWfdSg~~p~~~l~~p~~~-~e~~~~~P~d~~~~G~Di~r~----W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld 587 (947)
||||+-+.|+++++||.++ +.|+.|||+|+++.|+||++| |++.|++. +..|+++|++|||+.
T Consensus 227 VWfDA~i~Yisa~g~~~~~~~~~~~~Wp~~~h~iGkDii~FH~i~wpamL~~~-----------~~~~p~~v~~hg~~~- 294 (644)
T PRK12267 227 VWIDALLNYITALGYGSDDDELFMKFWPADVHLVGKDILRFHAIYWPIMLMAL-----------DLPLPKHLFAHGWWL- 294 (644)
T ss_pred EEECCCCCHHHHHCCCCCCCHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHC-----------CCCCCCEEECCCEEE-
T ss_conf 84224300343413862122667763731330268553236688999999976-----------999864451044187-
Q ss_pred HHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC--CHHHHHHHHH-HHHHHHCCCCCCCCCC
Q ss_conf 012255431245653023320254034445431233556775434110111--0000123444-3333202444577676
Q gi|254780933|r 588 KNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAG--YRNFITKFWN-AIRFSKMKNARHSVSF 664 (947)
Q Consensus 588 ~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~--~r~f~nKLwN-a~rf~~~~~~~~~~~~ 664 (947)
.+|+|||||+||+|+|.+++++||+|++||||++..+.++|.+||++.+.. ...++|+|+| +.|.+.+.........
T Consensus 295 ~~g~KmSKS~Gn~i~~~~~~~~~g~D~lRyyl~~~~~~~~D~dfs~~~f~~r~NsdL~n~lGNl~~R~~~~~~k~~~g~v 374 (644)
T PRK12267 295 MKDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEAFVERINSDLANDLGNLLNRTVAMINKYFDGEI 374 (644)
T ss_pred CCCCEECCCCCCEECHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 17860055368422379998755940436464444887877778999999998899887777899999999887518867
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHH
Q ss_conf 7743331555677999999998889987531001024577765310013688986476530567---1444321000145
Q gi|254780933|r 665 VPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKD---SELVSETLSCFSY 741 (947)
Q Consensus 665 ~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~~---~~~~~~~~~~l~~ 741 (947)
.........|+.++.+...++..+.++|++++|++|++.+++++ +.+|.||+..+|.-..++ .+....+.+++..
T Consensus 375 p~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~Al~~i~~l~--~~~N~Yi~~~~PW~L~K~~~~~~~~~~vl~~~l~ 452 (644)
T PRK12267 375 PAYKGVTEFDEELLALAKETLKKYEEAMEALQFSRALEELWKLI--SRANKYIDETAPWVLAKDEGKKERLGAVMAHLAE 452 (644)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 88877874569999999999999999997126999999999999--9999988857887663686629999999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 676403456774489999999743566
Q gi|254780933|r 742 VLYNVCKLLHPIIPFVTEDLYSHVSPQ 768 (947)
Q Consensus 742 vl~~~l~ll~P~~PfitEeiw~~l~~~ 768 (947)
+++.+.+||+||||.+|++||+.|+-.
T Consensus 453 ~~r~l~ilL~P~mP~~a~ki~~~Lgl~ 479 (644)
T PRK12267 453 SLRKVAVLLSPFMPETSKKIAEQLGLE 479 (644)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHCCCC
T ss_conf 999999970683657999999981999
No 26
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=651.17 Aligned_cols=482 Identities=22% Similarity=0.351 Sum_probs=372.8
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 80899728449999865437889677999998767089835677881545408999999997674599877779899999
Q gi|254780933|r 37 GVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIE 116 (947)
Q Consensus 37 ~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~ 116 (947)
++|.++.|.||+||.|||||+++++.+|+++||+||+|++|+|+.|+|+||+|||.+++++ |.++.
T Consensus 2 k~~~iTt~ipY~Ng~~HiGH~~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~~i~~~A~~~-----g~tp~--------- 67 (666)
T PRK00133 2 RKILVTCALPYANGPIHLGHLLEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKE-----GITPE--------- 67 (666)
T ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHC-----CCCHH---------
T ss_conf 8779817987888984312467699999999999836995498474278848999999985-----99999---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 99999999999999999980836642798115886799999999999998894331332022037767801486865414
Q gi|254780933|r 117 KVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKE 196 (947)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~ 196 (947)
++++++.+.+++++++||+++| +.++|++|.+.+.||++|.+|+++|+||++.+.++|||.|++-|+|..|
T Consensus 68 ---e~~d~~~~~~~~~~~~l~Is~D--~f~rTt~~~h~~~vq~~f~~l~~~G~iy~~~~~~~Yc~~~e~fl~Dr~V---- 138 (666)
T PRK00133 68 ---ELIARYHAEHKRDFAGFGISFD--NYGSTHSEENRELAQEIYLKLKENGYIYERTIEQLYDPEKGMFLPDRFV---- 138 (666)
T ss_pred ---HHHHHHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCEE----
T ss_conf ---9999999999999998399578--7857898899999999999999789989740355566875655254234----
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCC
Q ss_conf 68766999965304530001245555544245688716999826740101024444441000123111542332024865
Q gi|254780933|r 197 VDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRL 276 (947)
Q Consensus 197 ~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~ 276 (947)
.|+
T Consensus 139 -------------------------------------------------------------------~Gt---------- 141 (666)
T PRK00133 139 -------------------------------------------------------------------KGT---------- 141 (666)
T ss_pred -------------------------------------------------------------------EEE----------
T ss_conf -------------------------------------------------------------------202----------
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCH
Q ss_conf 7321000034212232032124778556566430465311101677752136654445554346554655531-001512
Q gi|254780933|r 277 IPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSE-FEGLDC 355 (947)
Q Consensus 277 ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v 355 (947)
||.++..|- +| .. | +.+|. +.
T Consensus 142 --------------------CP~C~~~~~-----~G-----------D~-----------C-------e~cG~~~~---- 163 (666)
T PRK00133 142 --------------------CPKCGAEDQ-----YG-----------DN-----------C-------EVCGATYS---- 163 (666)
T ss_pred --------------------CCCCCCHHH-----CC-----------CC-----------C-------CCCCCCCC----
T ss_conf --------------------577787120-----48-----------74-----------2-------24565167----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHH
Q ss_conf 33448889988887643332102232223566655324443122212145420233343200244112144311356764
Q gi|254780933|r 356 FAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWL 435 (947)
Q Consensus 356 ~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl 435 (947)
+ .+| .=|+|++||++++.+.++|||+++.++.+++++.++++. | |.+.++...+||
T Consensus 164 --p-----~eL--------------~~p~~~~~g~~~e~~~~e~~ff~Ls~~~~~L~~~~~~~~--~-~~~~~n~~~~~l 219 (666)
T PRK00133 164 --P-----TEL--------------INPKSAISGATPVLKESEHFFFKLPDFEEFLKEWTRSGA--L-QPNVANKMKEWL 219 (666)
T ss_pred --C-----HHH--------------CCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHH
T ss_conf --3-----442--------------386434579851660353333138777789987510488--9-878999999998
Q ss_pred H-CCCCCCCCCCCC-CCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECC
Q ss_conf 1-011123212354-56310269838998876576234454203455678776555410025688883101882410022
Q gi|254780933|r 436 E-NIQPWCISRQIW-WGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDT 513 (947)
Q Consensus 436 ~-~~~DW~ISRqr~-WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDt 513 (947)
+ +++|||||||+. ||+|||- + +.-|+.|
T Consensus 220 ~~gL~D~~ISR~~~W~GipvP~----~----------------------------------------------~~kv~YV 249 (666)
T PRK00133 220 EEGLQDWDISRDAPYFGFEIPG----A----------------------------------------------PGKVFYV 249 (666)
T ss_pred HCCCCCCCEEEECCCCCEECCC----C----------------------------------------------CCEEEEE
T ss_conf 5788775304027844458889----8----------------------------------------------7648999
Q ss_pred EEECCCCCCCEE-CHHH-HHHCCCCCCCCC-----CCCCCCCCCCC----HHHHHHHHHHHCCCCCCCCCCCCCCHHCCC
Q ss_conf 020442333201-0111-100012345553-----01245543210----135677766530121133786852000014
Q gi|254780933|r 514 WFSSALWPFASL-GWPE-QTAELKTYYPTS-----VLVTGFDILFF----WVARMMMMGLYFMKDAEGKGIEPFHIVYMH 582 (947)
Q Consensus 514 WfdSg~~p~~~l-~~p~-~~~e~~~~~P~d-----~~~~G~Di~r~----W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~h 582 (947)
|||+-+=+.+.. .|.. ...+|+.|||.| ++..|+||+|| |++.++..+ -..| ++|++|
T Consensus 250 W~DA~igYis~t~~~~~~~~~~~~~~W~~d~~~~~vhfiGKDii~FH~i~wPa~L~~~g----------~~lP-~~v~~h 318 (666)
T PRK00133 250 WLDAPIGYISSTKNLCDKRGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAG----------YRLP-TNVFAH 318 (666)
T ss_pred EECCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCC----------CCCC-CCCCCC
T ss_conf 61564537776443314356558763889987633675344311464767999998467----------7888-612114
Q ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCC-CCCCCCCCCCCC--CHHHHHHHHH-HHHHHHCCCC
Q ss_conf 43100012255431245653023320254034445431233556-775434110111--0000123444-3333202444
Q gi|254780933|r 583 ALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQG-RDINLDLERIAG--YRNFITKFWN-AIRFSKMKNA 658 (947)
Q Consensus 583 G~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~-~D~~fs~~~i~~--~r~f~nKLwN-a~rf~~~~~~ 658 (947)
||+. .+|+|||||+||+|+|.+++++||+|++||||++..+.+ +|.+||++.+.. ...++|.|.| +.|-+.|-..
T Consensus 319 g~l~-~~G~KmSKS~Gnvv~p~~~l~~yg~D~lRY~l~~~~p~~~~D~dfs~~~~~~r~NsdLan~lGNl~~R~~~~~~k 397 (666)
T PRK00133 319 GFLT-VEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPSRIDDIDFNWEDFQQRVNSDLVGKLVNFASRAAGFINK 397 (666)
T ss_pred CCEE-ECCEEEECCCCEEEEHHHHHHHCCCCCEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6487-788060012671761799998669645302033107898767786999999998688887666899999999998
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCHHHH--HHH
Q ss_conf 5776767743331555677999999998889987531001024577765310013688986476530-5671444--321
Q gi|254780933|r 659 RHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILN-QKDSELV--SET 735 (947)
Q Consensus 659 ~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~-~~~~~~~--~~~ 735 (947)
.. .+.+|.. ..|+-++..+..+...+.++|++++|++|+..+++++ ..+|.||+-.+|.-. +++++.. ..+
T Consensus 398 ~~-~g~vp~~---~~d~~l~~~~~~~~~~~~~~~~~~~~~~Al~~i~~l~--~~~NkYi~~~~PW~L~K~d~~~~~l~~V 471 (666)
T PRK00133 398 RF-DGKLPDE---LADPELLEEFRAAAESIAEAYEAREFRKALREIMALA--DRANKYVDDKEPWKLAKQEGEDAALQEV 471 (666)
T ss_pred HC-CCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHCCCHHHHCCCHHHHHHHHH
T ss_conf 65-9978997---4589999999999999999998106999999999999--9998887744876553685668999999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 000145676403456774489999999743566
Q gi|254780933|r 736 LSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQ 768 (947)
Q Consensus 736 ~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~ 768 (947)
.+++..+++.+.+||+||||.+|++||+.|+-.
T Consensus 472 l~~~le~lr~laiLL~PfmP~~a~ki~~~Lg~~ 504 (666)
T PRK00133 472 CSVGLNLFRALAIYLKPVLPELAERAEAFLNVE 504 (666)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf 999999999999972386737899999980989
No 27
>pfam09334 tRNA-synt_1g tRNA synthetases class I (M). This family includes methionyl tRNA synthetases.
Probab=100.00 E-value=0 Score=616.36 Aligned_cols=373 Identities=26% Similarity=0.384 Sum_probs=299.8
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHH
Q ss_conf 89972844999986543788967799999876708983567788154540899999999767459987777989999999
Q gi|254780933|r 39 FCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKV 118 (947)
Q Consensus 39 f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~ 118 (947)
|+|+.||||+||.|||||+++++++|+++||+||+||+|+|++|+|+||+||+.+++++ +.++
T Consensus 1 ~~I~~ppP~~nG~lHiGHa~~~~~~Dvl~R~~r~~G~~V~~v~g~D~~g~~i~~ka~~~-----g~~~------------ 63 (388)
T pfam09334 1 FLITTALPYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKE-----GVTP------------ 63 (388)
T ss_pred CEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHC-----CCCH------------
T ss_conf 98937898888860022418899999999999956997071386485379999999984-----9999------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCCCC
Q ss_conf 99999999999999998083664279811588679999999999999889433133202203776780148686541468
Q gi|254780933|r 119 WEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEVD 198 (947)
Q Consensus 119 ~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~~~ 198 (947)
.++++++.+.++++|++||+++ ++.+.|+++.|.+.|+++|.+|+++|+||++.++|+|||.|+|.|+|.+|+.
T Consensus 64 ~e~~~~y~~~~~~~~~~lgi~~--D~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g---- 137 (388)
T pfam09334 64 QELVDRYHEEFKELFKKFNISF--DDFIRTTSERHKELVQEFFLKLYEKGDIYEGEYEGWYCVSDERFLPDRYVEG---- 137 (388)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHCC----
T ss_conf 9999999999999999839967--8786579846899999998751406815532411223666666665333075----
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCCCC
Q ss_conf 76699996530453000124555554424568871699982674010102444444100012311154233202486573
Q gi|254780933|r 199 GNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLIP 278 (947)
Q Consensus 199 ~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~ip 278 (947)
. .|.++.
T Consensus 138 -------------------------------------------------------------------~---cp~~~~--- 144 (388)
T pfam09334 138 -------------------------------------------------------------------T---CPYCGS--- 144 (388)
T ss_pred -------------------------------------------------------------------C---CCCCCC---
T ss_conf -------------------------------------------------------------------4---575575---
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 21000034212232032124778556566430465311101677752136654445554346554655531001512334
Q gi|254780933|r 279 IVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAA 358 (947)
Q Consensus 279 i~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~a 358 (947)
..+++..+
T Consensus 145 ------------------~~~~~~~~------------------------------------------------------ 152 (388)
T pfam09334 145 ------------------EDARGDQC------------------------------------------------------ 152 (388)
T ss_pred ------------------CCCCCCHH------------------------------------------------------
T ss_conf ------------------01366410------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHC-
Q ss_conf 4888998888764333210223222356665532444312221214542023334320024411214431135676410-
Q gi|254780933|r 359 RSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLEN- 437 (947)
Q Consensus 359 ~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~~- 437 (947)
+..|. ..++..+..|+|+|||++++++.++|||++++++++++++.+.+... ..|+..++...+||++
T Consensus 153 --------e~~G~--~~e~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~-~~~~~~~~~~~~wl~~~ 221 (388)
T pfam09334 153 --------EVCGR--PLEPTELINPRSAISGSTPELKEEEHYFFRLSKFQDKLLEWIKENPD-EPPSNVNEVVLSWLKEG 221 (388)
T ss_pred --------HCCCC--CCCHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHCC
T ss_conf --------02388--27867741764446799754432441233068899999999954998-89889999999998668
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCEEEC
Q ss_conf 11123212354563102698389988765762344542034556787765554100256888831018824100220204
Q gi|254780933|r 438 IQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSS 517 (947)
Q Consensus 438 ~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtWfdS 517 (947)
++|||||||++||+|||-. +..|++|||||
T Consensus 222 l~Dw~ISR~~~WG~~iP~~--------------------------------------------------~~~~~~vW~da 251 (388)
T pfam09334 222 LKDLSITRDLDWGIPVPGD--------------------------------------------------PGKVIYVWFDA 251 (388)
T ss_pred CCCCCCCCCCCCCCCCCCC--------------------------------------------------CCEEEEEECCC
T ss_conf 8876441247787504888--------------------------------------------------98068772356
Q ss_pred CCCCCCEECHHHH-HHCCCCCCCCC-----CCCCCCCCCCCH----HHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 4233320101111-00012345553-----012455432101----3567776653012113378685200001443100
Q gi|254780933|r 518 ALWPFASLGWPEQ-TAELKTYYPTS-----VLVTGFDILFFW----VARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRD 587 (947)
Q Consensus 518 g~~p~~~l~~p~~-~~e~~~~~P~d-----~~~~G~Di~r~W----~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld 587 (947)
...+.++.+++.. ...|+.|||.+ +...|+||++|| .+.++. .+..|++++++||||++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~i~~~G~Di~~fh~~~~~a~~~~-----------~~~~~~~~~~~~g~v~~ 320 (388)
T pfam09334 252 LIGYISATKYLSGNPEKWKKFWADDPDTEIVHFIGKDIIRFHAIYWPAMLMA-----------AGLPLPTQVFAHGWLTV 320 (388)
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHH-----------CCCCCCCEEEEEEEEEE
T ss_conf 5552000277777817888644367762000106764142017899999983-----------89998866787579975
Q ss_pred HHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH--HHHHHHH-HHHH
Q ss_conf 012255431245653023320254034445431233556775434110111000--0123444-3333
Q gi|254780933|r 588 KNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRN--FITKFWN-AIRF 652 (947)
Q Consensus 588 ~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r~--f~nKLwN-a~rf 652 (947)
+|+|||||+||+|+|.|++++||||++||||++.+++|+|++||++.+...+| |+||||| ++|-
T Consensus 321 -~G~KMSKSlGN~i~~~d~i~~ygaDalR~~L~~~~~~~~d~~Fs~~~~~~~~n~~~~~kl~N~~~r~ 387 (388)
T pfam09334 321 -EGGKMSKSRGNVVDPDELLDRYGVDALRYYLAREAPEGKDGDFSWEDFVERVNSELANDLGNLVNRT 387 (388)
T ss_pred -CCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -9944478699878889999887828999999953999899989999999998799888776577330
No 28
>cd00668 Ile_Leu_Val_MetRS_core This is the catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=0 Score=589.29 Aligned_cols=330 Identities=41% Similarity=0.720 Sum_probs=295.7
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHH
Q ss_conf 08997284499998654378896779999987670898356778815454089999999976745998777798999999
Q gi|254780933|r 38 VFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEK 117 (947)
Q Consensus 38 ~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~ 117 (947)
+|+|+.||||+||.|||||++++++.|+++||+||+||+|++++||||||+|||..++++...... ...+.+.
T Consensus 1 ~~~i~~~~P~~nG~LHiGHar~~~~~Dv~~R~~r~~G~~V~~v~g~D~~G~~i~~~a~~~~~~~~~-------~~~~~~~ 73 (334)
T cd00668 1 KFYITTPPPYVNGVLHLGHALTYTLKDIIARYKRMRGYNVLFPPGWDEHGLPIENKAEKEGGIEGK-------KEEFLED 73 (334)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCCCCC-------HHHHHHH
T ss_conf 989955998888861466759899999999999816995360686686568999999996871210-------5777753
Q ss_pred HHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCCC
Q ss_conf 99999999999999999808366427981158867999999999999988943313320220377678014868654146
Q gi|254780933|r 118 VWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEV 197 (947)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~~ 197 (947)
|++|++++++.+++++++||+++||++++.|++|.|.++|+++|.+|+++|+||++.++|
T Consensus 74 ~~~~~~~~~~~~~~~~~~lgi~~D~~~~~~T~~~~~~~~v~~~~~~L~~~G~iy~~~~~v-------------------- 133 (334)
T cd00668 74 PKEWVDKYIEEFKEQFKRLGISFDWDRFYRTTDPEYYEAVQWIFLKLYEKGLIYRGERPV-------------------- 133 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEEECCCC--------------------
T ss_conf 999999999999999999689768787611599999999999999999879989505667--------------------
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCCC
Q ss_conf 87669999653045300012455555442456887169998267401010244444410001231115423320248657
Q gi|254780933|r 198 DGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLI 277 (947)
Q Consensus 198 ~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~i 277 (947)
T Consensus 134 -------------------------------------------------------------------------------- 133 (334)
T cd00668 134 -------------------------------------------------------------------------------- 133 (334)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 32100003421223203212477855656643046531110167775213665444555434655465553100151233
Q gi|254780933|r 278 PIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFA 357 (947)
Q Consensus 278 pi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 357 (947)
T Consensus 134 -------------------------------------------------------------------------------- 133 (334)
T cd00668 134 -------------------------------------------------------------------------------- 133 (334)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHC
Q ss_conf 44888998888764333210223222356665532444312221214542023334320024411214431135676410
Q gi|254780933|r 358 ARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLEN 437 (947)
Q Consensus 358 a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~~ 437 (947)
+.++|||++++++++.+++.++ ++++.|+..++++.+||++
T Consensus 134 -------------------------------------~~~~~~f~~~~~~~~~l~~~~~--~~~~~p~~~~~~~~~~l~~ 174 (334)
T cd00668 134 -------------------------------------RLTEQWFLKLSKLKDRLLEALE--KNEIWPENVRNRFLNWLEN 174 (334)
T ss_pred -------------------------------------CCCCEEEEEHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHC
T ss_conf -------------------------------------7565477788999999999998--4898778999999988746
Q ss_pred -CCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCEEE
Q ss_conf -1112321235456310269838998876576234454203455678776555410025688883101882410022020
Q gi|254780933|r 438 -IQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFS 516 (947)
Q Consensus 438 -~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtWfd 516 (947)
++|||||||++||+|+|+|+|+++... +..++....++++|+|||||
T Consensus 175 ~~~d~~isR~~~wG~~~P~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~Wfd 222 (334)
T cd00668 175 GLRDWCISRQRYWGIPIPAWYCEDCGEV--------------------------------CPKCGKELKRETDVLDVWFD 222 (334)
T ss_pred CCCCCEEEEECCCCCCCCEEECCCCCCC--------------------------------CCCCCCCCCCCCCCEEEEEC
T ss_conf 7877525733467875561332567755--------------------------------66653113687653446641
Q ss_pred CCCCCCCEECHHHHHH---CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHH
Q ss_conf 4423332010111100---0123455530124554321013567776653012113378685200001443100012255
Q gi|254780933|r 517 SALWPFASLGWPEQTA---ELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKM 593 (947)
Q Consensus 517 Sg~~p~~~l~~p~~~~---e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KM 593 (947)
|+++|++..+|+.+.. .+..++|.|++++|+|++++|+.++++++.+++. +.||+++++|||+++++|+||
T Consensus 223 s~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~a~~~------~~~~~~~~~~g~~~~~~G~KM 296 (334)
T cd00668 223 SGIGYLSALGYPNEEEGFEEFEYWYPADLHVIGKDIIRFHLIYWPAMLLALFG------KPPPKNVLVHGLVLDEGGRKM 296 (334)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCC------CCCHHHEEECCCEECCCCCCC
T ss_conf 75654322678643325668761798169871561363299999999998449------850877574201983899573
Q ss_pred HHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 43124565302332025403444543123355677543
Q gi|254780933|r 594 SKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINL 631 (947)
Q Consensus 594 SKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~f 631 (947)
|||+||+|+|.+++++||+|++||||++.++.++|++|
T Consensus 297 SKS~GN~i~~~~~l~~~g~D~lR~~l~~~~~~~~d~~f 334 (334)
T cd00668 297 SKSLGNVVDPLDAIEKYGADALRYYLLSAAPEGEDLNF 334 (334)
T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 88699888989999875948999999942998889998
No 29
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=568.42 Aligned_cols=490 Identities=24% Similarity=0.363 Sum_probs=387.6
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHH
Q ss_conf 98089972844999986543788967799999876708983567788154540899999999767459987777989999
Q gi|254780933|r 36 SGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFI 115 (947)
Q Consensus 36 ~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~ 115 (947)
.++|.++.|.||+||.||+||++++..+||++||+||+|++|+|.-|.|.||.|||.+++++ |.+..
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~-----g~tP~-------- 70 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKE-----GITPQ-------- 70 (558)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHC-----CCCHH--------
T ss_conf 87389955898899986413678887899999999826975899951478777889999985-----99989--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCC
Q ss_conf 99999999999999999998083664279811588679999999999999889433133202203776780148686541
Q gi|254780933|r 116 EKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQK 195 (947)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~ 195 (947)
++++++...+++.++.+++++| +...|+++.+.+.||..|.+|+++|+||.+..++.||++|++=|.|-+|+
T Consensus 71 ----el~d~~~~~~~~~~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~-- 142 (558)
T COG0143 71 ----ELVDKNHEEFKELFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE-- 142 (558)
T ss_pred ----HHHHHHHHHHHHHHHHHCCCCC--EECCCCCHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCCCCHHEE--
T ss_conf ----9999999999999998098543--00168977799999999999997898731443564735435645621020--
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCC
Q ss_conf 46876699996530453000124555554424568871699982674010102444444100012311154233202486
Q gi|254780933|r 196 EVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGR 275 (947)
Q Consensus 196 ~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~ 275 (947)
|. +|-+|-
T Consensus 143 ---------------------------------------------------------------------g~---cp~cg~ 150 (558)
T COG0143 143 ---------------------------------------------------------------------GT---CPKCGG 150 (558)
T ss_pred ---------------------------------------------------------------------CC---CCCCCC
T ss_conf ---------------------------------------------------------------------55---898675
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 57321000034212232032124778556566430465311101677752136654445554346554655531001512
Q gi|254780933|r 276 LIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDC 355 (947)
Q Consensus 276 ~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 355 (947)
+ + ++..
T Consensus 151 ~---------------------------~------------------a~GD----------------------------- 156 (558)
T COG0143 151 E---------------------------D------------------ARGD----------------------------- 156 (558)
T ss_pred C---------------------------C------------------CCCC-----------------------------
T ss_conf 3---------------------------4------------------5764-----------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHH
Q ss_conf 33448889988887643332102232223566655324443122212145420233343200244112144311356764
Q gi|254780933|r 356 FAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWL 435 (947)
Q Consensus 356 ~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl 435 (947)
..+.+|........ .=|.||.||...+.+.+..||+++.++.+++++.+++..-.+.|++.++...+||
T Consensus 157 ---------~Ce~Cg~~~~P~~l--~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i 225 (558)
T COG0143 157 ---------QCENCGRTLDPTEL--INPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFL 225 (558)
T ss_pred ---------HHHHCCCCCCCHHC--CCCEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf ---------34322675792121--7981686479764335405998879869999999973965458868999999999
Q ss_pred H-CCCCCCCCC-CCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECC
Q ss_conf 1-011123212-35456310269838998876576234454203455678776555410025688883101882410022
Q gi|254780933|r 436 E-NIQPWCISR-QIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDT 513 (947)
Q Consensus 436 ~-~~~DW~ISR-qr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDt 513 (947)
+ +++|||||| ...||+|+| . ++ .-|+=|
T Consensus 226 ~~GL~d~~IsR~~~~WGipvP---~-~p----------------------------------------------~kv~YV 255 (558)
T COG0143 226 KEGLKDLSITRTDLDWGIPVP---G-DP----------------------------------------------GKVIYV 255 (558)
T ss_pred HCCCCCCCEECCCCCCCCCCC---C-CC----------------------------------------------CCEEEE
T ss_conf 766866431458988772579---9-99----------------------------------------------877999
Q ss_pred EEECCCCCCCEECHH---HHHHCCCCCCCCC----CCCCCCCCCCC----HHHHHHHHHHHCCCCCCCCCCCCCCHHCCC
Q ss_conf 020442333201011---1100012345553----01245543210----135677766530121133786852000014
Q gi|254780933|r 514 WFSSALWPFASLGWP---EQTAELKTYYPTS----VLVTGFDILFF----WVARMMMMGLYFMKDAEGKGIEPFHIVYMH 582 (947)
Q Consensus 514 WfdSg~~p~~~l~~p---~~~~e~~~~~P~d----~~~~G~Di~r~----W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~h 582 (947)
|||.=+-+.+.++++ .+..+|++|||.| ++.-|+||+|| |++.++..+.. .| ++|+.|
T Consensus 256 WfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~----------lP-~~i~ah 324 (558)
T COG0143 256 WFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLP----------LP-TRIFAH 324 (558)
T ss_pred EECCHHHHHHHHCCHHCCCCHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCC----------CC-CEEEEE
T ss_conf 6344889999954121058767898637788845999962456743245789999738999----------88-779840
Q ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC--HHHHHHHHH-HHHHHHCCCCC
Q ss_conf 431000122554312456530233202540344454312335567754341101110--000123444-33332024445
Q gi|254780933|r 583 ALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGY--RNFITKFWN-AIRFSKMKNAR 659 (947)
Q Consensus 583 G~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~--r~f~nKLwN-a~rf~~~~~~~ 659 (947)
|++.. +|+|||||+||+|+|.+++++||+|++|||++...+.++|.+||++.+... ..+.|++.| +.|.+.|...
T Consensus 325 g~l~~-~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~l~fi~k- 402 (558)
T COG0143 325 GFLTL-EGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINK- 402 (558)
T ss_pred EEEEE-CCCCCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 13997-7941244288187179999874823857988873778888888999999999899887888999999999975-
Q ss_pred CCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHH-HCCC-HHHHHHH
Q ss_conf 7767677433--3155567799999999888998753100102457776531001368898647653-0567-1444321
Q gi|254780933|r 660 HSVSFVPQDV--KWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSIL-NQKD-SELVSET 735 (947)
Q Consensus 660 ~~~~~~~~~~--~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l-~~~~-~~~~~~~ 735 (947)
...+.+|... ....|+.++.+...+...+.++|++++|+.|+..+++++ ..+|.||...+|.- .+.+ .+...++
T Consensus 403 ~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~--~~~N~Yi~~~~PW~l~k~~~~~~~~~v 480 (558)
T COG0143 403 YFDGVVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALA--SRANKYIDEQAPWKLAKEDKRERLATV 480 (558)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCCCCHHHCCCCHHHHHHH
T ss_conf 259968865455534569999999999999999998625999999999999--999887642898023204729999999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 000145676403456774489999999743566
Q gi|254780933|r 736 LSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQ 768 (947)
Q Consensus 736 ~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~ 768 (947)
..++..+++.+..||+||||..|++||+.|+..
T Consensus 481 l~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~ 513 (558)
T COG0143 481 LYLALELVRVLAILLYPFMPETAEKIWDQLGLE 513 (558)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
T ss_conf 999999999999981586860299999982886
No 30
>TIGR00398 metG methionyl-tRNA synthetase; InterPro: IPR002304 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Methionyl-tRNA synthetase (6.1.1.10 from EC) is an alpha 2 dimer that belongs to class Ia. In some species (archaea, eubacteria and eukaryota) a coding sequence, similar to the C-term end of MetRS, is present as an independent gene which is a tRNA binding domain as a dimer. In eubacteria, MetRS can also be splitted in two sub-classes corresponding to the presence of one or two CXXC domain specific to zinc binding. The crystal structures of a number of methionyl-tRNA synthases are known , , .; GO: 0000166 nucleotide binding, 0004825 methionine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006431 methionyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=559.52 Aligned_cols=494 Identities=25% Similarity=0.400 Sum_probs=384.2
Q ss_pred EEECCCCCCCCCCCHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-HHHCCHHHHHHH
Q ss_conf 9972844999986543788-96779999987670898356778815454089999999976745998-777798999999
Q gi|254780933|r 40 CIAMPPPNVTGSLHMGHAF-NTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLT-REDIGRDAFIEK 117 (947)
Q Consensus 40 ~~~~ppP~~nG~lHiGH~~-~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~-~~~~g~~~f~~~ 117 (947)
.|+.|=|||||.||+||++ +++.+||++||+||+|++|+|.-|.|+||.|||.+|+++ |.+ +.
T Consensus 2 liTtpl~Y~Ng~pHlGH~~st~~~AD~~~RY~~~~G~~v~f~cGTDEHG~kI~~~A~~~-----g~tqP~---------- 66 (573)
T TIGR00398 2 LITTPLPYANGKPHLGHAYSTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE-----GLTQPK---------- 66 (573)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHC-----CCCCHH----------
T ss_conf 10057766787112103667778999999998528974789851344687888869870-----899648----------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCCC
Q ss_conf 99999999999999999808366427981158867999999999999988943313320220377678014868654146
Q gi|254780933|r 118 VWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEV 197 (947)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~~ 197 (947)
++++++.+.++++++.+++++| +.-+|+|+...+.|+.+|.+|++||+||.+..-..|||.|++=|++-.+....+
T Consensus 67 --~~vd~~~~~f~~~~~~lnI~fD--~F~RTTd~~H~~~v~~~f~~L~~nGyIY~~~~~g~YC~~c~~Fl~dr~~~~~yv 142 (573)
T TIGR00398 67 --ELVDKYHEEFKKLWKWLNISFD--RFIRTTDEEHKEIVQKIFQKLLENGYIYEKEIKGLYCPECESFLPDRKLVDDYV 142 (573)
T ss_pred --HHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHCCCC
T ss_conf --9999999999999987284567--654676888899999999998753774110035323475665362232001334
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCCC
Q ss_conf 87669999653045300012455555442456887169998267401010244444410001231115423320248657
Q gi|254780933|r 198 DGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLI 277 (947)
Q Consensus 198 ~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~i 277 (947)
+| .+|.++..-
T Consensus 143 ~g---------------------------------------------------------------------~CP~c~~~~ 153 (573)
T TIGR00398 143 EG---------------------------------------------------------------------TCPKCGSED 153 (573)
T ss_pred CC---------------------------------------------------------------------CCCCCCCCC
T ss_conf 67---------------------------------------------------------------------488688777
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 32100003421223203212477855656643046531110167775213665444555434655465553100151233
Q gi|254780933|r 278 PIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFA 357 (947)
Q Consensus 278 pi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 357 (947)
+ .-|-|
T Consensus 154 ~-------~gd~c------------------------------------------------------------------- 159 (573)
T TIGR00398 154 A-------RGDHC------------------------------------------------------------------- 159 (573)
T ss_pred C-------CCCCC-------------------------------------------------------------------
T ss_conf 7-------78775-------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEEC-CCCCHHH-HHHH
Q ss_conf 4488899888876433321022322235666553244431222121454202333432002441121-4431135-6764
Q gi|254780933|r 358 ARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIP-QSWDKSY-YEWL 435 (947)
Q Consensus 358 a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P-~~~~~~~-~~wl 435 (947)
+..|+ ..+|..-.=|.|-=|+.-.+++-++.+|.+++++.+++.+.+++......| ++..+.. .+|+
T Consensus 160 ---------~~Cg~--~leP~~Li~P~c~~~~~~~~~~~~~hyFf~L~~~~~~l~~~~~~~~~~~~~~~~~~n~~~~~~~ 228 (573)
T TIGR00398 160 ---------EVCGR--HLEPFELINPRCVICKNKPELRDSEHYFFRLSAFEKELEEWIKKNPESKSPASNVKNVAKQNWI 228 (573)
T ss_pred ---------CCCCC--CCCCCHHCCCCEEEECCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf ---------54655--3685001187025548800251354522353688899999861488424218999999889985
Q ss_pred HC-CCCCCCCCCCC---CCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEE
Q ss_conf 10-11123212354---563102698389988765762344542034556787765554100256888831018824100
Q gi|254780933|r 436 EN-IQPWCISRQIW---WGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVL 511 (947)
Q Consensus 436 ~~-~~DW~ISRqr~---WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Dvl 511 (947)
++ |+||||||+.. ||+|||- ++ ...-|+
T Consensus 229 ~~GL~D~~ItR~~~~lkWG~pvP~----~~--------------------------------------------~p~~~~ 260 (573)
T TIGR00398 229 KGGLKDLAITRDLVDLKWGIPVPN----DG--------------------------------------------APNKVV 260 (573)
T ss_pred CCCCCCCEEECCCCCCCCCCCCCC----CC--------------------------------------------CCCCEE
T ss_conf 068743011036441211531789----89--------------------------------------------879679
Q ss_pred CCEEECCCCCCC---EECHHH-HHHCCCCCCCCC------CCCCCCCCCCC----HHHHHHHHH--HHCCCCCCCCCCCC
Q ss_conf 220204423332---010111-100012345553------01245543210----135677766--53012113378685
Q gi|254780933|r 512 DTWFSSALWPFA---SLGWPE-QTAELKTYYPTS------VLVTGFDILFF----WVARMMMMG--LYFMKDAEGKGIEP 575 (947)
Q Consensus 512 DtWfdSg~~p~~---~l~~p~-~~~e~~~~~P~d------~~~~G~Di~r~----W~~~~l~~~--~~l~~~~~~~~~~P 575 (947)
=||||.=+=+.+ .++.-. .++.+++||+.+ .+.-|+||+|| |++.++..+ ..+ |
T Consensus 261 YVW~DAl~gYiss~~~~~~~~~~~~~~~~~W~~~~~~~~~~HfIGKDI~~FH~iyWPa~L~~~~eN~~l----------P 330 (573)
T TIGR00398 261 YVWFDALIGYISSLKALGIEKGLTEDWKKWWNNNSEDAELIHFIGKDIVRFHTIYWPAMLMGLGENLPL----------P 330 (573)
T ss_pred EEEECHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHH----------H
T ss_conf 987203456999975213356875789986268886502788842412020333445888511210021----------2
Q ss_pred CCHHCCCCCCCCHHHHHHHHHCCCCCCHHH-HHCC-CCHHHHHHHHHCCCCCCCCCCCCCCCCCCC--HHHHHHHHH-HH
Q ss_conf 200001443100012255431245653023-3202-540344454312335567754341101110--000123444-33
Q gi|254780933|r 576 FHIVYMHALVRDKNGQKMSKSKGNVVDPID-VIDQ-YGADALRFYFSIMAVQGRDINLDLERIAGY--RNFITKFWN-AI 650 (947)
Q Consensus 576 fk~v~~hG~vld~~G~KMSKS~GNvidp~e-~i~~-yGaDalR~~l~~~~~~~~D~~fs~~~i~~~--r~f~nKLwN-a~ 650 (947)
++|+.||++.. +|+|||||+||||+|.+ ++++ ||+|.+||||+...+.+.|.+|+++.+... .+++|+|.| +.
T Consensus 331 -~q~~~hGyl~~-eG~KMSKS~G~vv~~~~~~~~~~~g~D~lRYYl~~~~~~~~D~~F~~~~f~~r~N~~L~n~lGNl~n 408 (573)
T TIGR00398 331 -TQVFAHGYLTV-EGQKMSKSLGNVVDPEDDLLARGYGADILRYYLLKEVPLGKDGDFSWEDFVERVNADLANDLGNLLN 408 (573)
T ss_pred -HHHEEEEEEEE-CCEEECCCCCCEECHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf -13243016884-7844323247532321787644788057888998642434476568899999976887765558999
Q ss_pred HHHHCCCCCCCCCCCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH
Q ss_conf 3320244457767677--------------43331555677999999998889987531001024577765310013688
Q gi|254780933|r 651 RFSKMKNARHSVSFVP--------------QDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWY 716 (947)
Q Consensus 651 rf~~~~~~~~~~~~~~--------------~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Y 716 (947)
|.+.|........... .......|.-++..++.+.+++.+++++++|+.|++.|++++ ...|.|
T Consensus 409 R~~~f~~k~f~g~~~~~~~~nfqfqeifqneP~l~~~~~~l~~~~~~~~~~~~~~~~~~~f~~Al~~~~~L~--~~gNky 486 (573)
T TIGR00398 409 RTLGFIKKYFNGVLPSVDETNFQFQEIFQNEPKLTEEDKELLKKINETLEQIDKALESFEFRKALEEILKLA--DRGNKY 486 (573)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_conf 999999887356211010123456666503765223566899999999999999886203899999999999--986147
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH---HHHHHCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9864765305671444321000145---676403456774489999999743566
Q gi|254780933|r 717 VEFIKSILNQKDSELVSETLSCFSY---VLYNVCKLLHPIIPFVTEDLYSHVSPQ 768 (947)
Q Consensus 717 ie~~K~~l~~~~~~~~~~~~~~l~~---vl~~~l~ll~P~~PfitEeiw~~l~~~ 768 (947)
|.-.+|.-..++++...++..++.. +++.+..||.||||.+||.|.+.|+-.
T Consensus 487 i~~~~PW~l~k~~~~~~~l~~~~~~~~e~~~~l~~Ll~P~~P~~~~k~~~~~n~~ 541 (573)
T TIGR00398 487 IDDNEPWELAKQSEKLKELLAVCSLVAELIRVLSILLYPFMPKLSEKILKLLNFE 541 (573)
T ss_pred HHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 6523887132570679999999999999999999984241024789999983887
No 31
>cd00812 LeuRS_core This is the catalytic core domain of leucyl tRNA synthetase (LeuRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=0 Score=542.34 Aligned_cols=359 Identities=28% Similarity=0.409 Sum_probs=255.7
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH-----CCHH
Q ss_conf 08997284499998654378896779999987670898356778815454089999999976745998777-----7989
Q gi|254780933|r 38 VFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTRED-----IGRD 112 (947)
Q Consensus 38 ~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~-----~g~~ 112 (947)
||+|+.||||+||.|||||+++++++||++||+||+|++|+|++|+|+||+|||+++++. +......... ++.+
T Consensus 1 k~~ITta~PY~NG~~HiGH~~~~i~aDi~~Ry~Rm~G~~V~~~~G~DeHG~pI~~~A~~~-g~~~~~~~~~~~~~~~~~~ 79 (376)
T cd00812 1 KFYILVMFPYPSGRLHVGHVRTYTIGDIIARYKRMKGYNVLFPMGFDAFGLPAENAADKI-GREDEDTIEPYRDVGVPDE 79 (376)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-CCCHHHHHHHHHHCCHHHH
T ss_conf 979985898889745468869899999999999955997046884565678999999996-8747765301111000188
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHH
Q ss_conf 999--999999999999999999980836642798115886799999999999998894331332022037767801486
Q gi|254780933|r 113 AFI--EKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDL 190 (947)
Q Consensus 113 ~f~--~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~ 190 (947)
.+. ..+++|++++.+.+++++++||+++||+|.|+|+|+.+.+.||++|.+|+++|+||++.++|+||+.|++-
T Consensus 80 ~~~~~~~p~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~vq~~f~~L~~~G~iy~~~~~~~y~~~~~~~---- 155 (376)
T cd00812 80 EIEKFADPKYWTEYFIAKMKEQLKRMGFSIDWRREFTTTDPEYYKFTQWQFLKLKEKGLIYKGEAPVNWCKLLDQW---- 155 (376)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCCCEE----
T ss_conf 7861279999999999999999998098737686643377789999999999999889889517555364677605----
Q ss_pred HHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEE
Q ss_conf 86541468766999965304530001245555544245688716999826740101024444441000123111542332
Q gi|254780933|r 191 EVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATL 270 (947)
Q Consensus 191 Ev~~~~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~ 270 (947)
|+++. ..|.+..++.
T Consensus 156 ------------f~~~~--------------------------------------------------~~~~~~~~~~--- 170 (376)
T cd00812 156 ------------FLKYS--------------------------------------------------TEWAERLLKD--- 170 (376)
T ss_pred ------------EECCC--------------------------------------------------HHHHHHHHHH---
T ss_conf ------------74166--------------------------------------------------7889998740---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02486573210000342122320321247785565664304653111016777521366544455543465546555310
Q gi|254780933|r 271 PIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEF 350 (947)
Q Consensus 271 Pl~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (947)
+.+ +... .
T Consensus 171 -~~~--------------------------------------~~~~-------------------------------p-- 178 (376)
T cd00812 171 -LEG--------------------------------------LDTW-------------------------------P-- 178 (376)
T ss_pred -HHC--------------------------------------CCCC-------------------------------C--
T ss_conf -420--------------------------------------4678-------------------------------6--
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHH
Q ss_conf 01512334488899888876433321022322235666553244431222121454202333432002441121443113
Q gi|254780933|r 351 EGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKS 430 (947)
Q Consensus 351 ~G~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~ 430 (947)
+.+... .+..+.. ..+|.+.-. + ..
T Consensus 179 ---------~~~~~~--~~~~~~~----------------------~~~~~~~~~------~--------------~~-- 203 (376)
T cd00812 179 ---------EEVKNM--QENWIGW----------------------LKGWACARR------Y--------------GL-- 203 (376)
T ss_pred ---------HHHHHH--HHHHHHH----------------------CCCCEEEEE------C--------------CC--
T ss_conf ---------889999--9998730----------------------246525411------1--------------11--
Q ss_pred HHHHHHCCCCCCCCCCC----CCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 56764101112321235----45631026983899887657623445420345567877655541002568888310188
Q gi|254780933|r 431 YYEWLENIQPWCISRQI----WWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKR 506 (947)
Q Consensus 431 ~~~wl~~~~DW~ISRqr----~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 506 (947)
...+..++|||||||| +||+|||+|+++++..+.. .++....+
T Consensus 204 -~~~~~~l~dw~isr~~~~~~~wg~~ip~~~~~~~~~~~~--------------------------------~~~~~~~~ 250 (376)
T cd00812 204 -GTVLPWDRDWLIERLRDSTIYWGYYTPAHHCEKCGPVCP--------------------------------KCGKPAKR 250 (376)
T ss_pred -CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEECC--------------------------------CCCCCCCC
T ss_conf -540655544341344456666770021597567864146--------------------------------66755566
Q ss_pred CCCEECCEEECCCCCCCEE------CHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHC
Q ss_conf 2410022020442333201------0111100012345553012455432101356777665301211337868520000
Q gi|254780933|r 507 DEDVLDTWFSSALWPFASL------GWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVY 580 (947)
Q Consensus 507 ~~DvlDtWfdSg~~p~~~l------~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~ 580 (947)
+.+++|+|||| +|-++.. ..+..++++++|||+|++++|+||++||+...++.+.+++.. ....|+++|+
T Consensus 251 ~~~~~~~w~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~fH~~~~~~~~~~l~~~---~~~~~p~~v~ 326 (376)
T cd00812 251 ETDTMDEFFDS-SWYYLRYLDPKNSEAPFDREEFEYWYPVDLYIGGKEHAVNHLLYSRFNHKALFDE---GTKEPPKGLR 326 (376)
T ss_pred CCCCCCCEEEE-EECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHC---CCCCCCCEEE
T ss_conf 54468865776-3014666784334476687999842886068813354201367999999999864---6777982668
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 144310001225543124565302332025403444543123355677543
Q gi|254780933|r 581 MHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINL 631 (947)
Q Consensus 581 ~hG~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~f 631 (947)
+|||++. +|+|||||+||+|+|.++|++||||++|||||+.++.++|.+|
T Consensus 327 ~hG~l~~-~G~KMSKS~Gn~v~p~~~l~~yg~D~lR~~Ll~~~p~~~D~~F 376 (376)
T cd00812 327 VQGMVLL-EGEKMSKSKGNVVTPDEAIKKYGADATRLYLLFAAPPESDANW 376 (376)
T ss_pred ECCCEEC-CCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 7572966-9966377899884989999885954999999944995568998
No 32
>KOG0436 consensus
Probab=100.00 E-value=0 Score=430.07 Aligned_cols=473 Identities=22% Similarity=0.329 Sum_probs=359.1
Q ss_pred CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHH
Q ss_conf 48998089972844999986543788967799999876708983567788154540899999999767459987777989
Q gi|254780933|r 33 KLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRD 112 (947)
Q Consensus 33 ~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~ 112 (947)
..+.+.|+++.|-=|+|-.||+||+++-.+.|+++||+|++|..|.|..|.|.|||-|+.+++ ..|.+..
T Consensus 35 ~~~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaa-----tnG~~P~----- 104 (578)
T KOG0436 35 VDEGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAA-----TNGRNPP----- 104 (578)
T ss_pred CCCCCEEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH-----HCCCCHH-----
T ss_conf 467850598455131478851457999999999999986358806860377754422433686-----5599907-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHH
Q ss_conf 99999999999999999999998083664279811588679999999999999889433133202203776780148686
Q gi|254780933|r 113 AFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEV 192 (947)
Q Consensus 113 ~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev 192 (947)
+.+++..+.+...++..|+.+ .+...|+||...+.||.....++.+|+||+|.+--.||..|+|-.-+.+|
T Consensus 105 -------e~cDr~s~~f~qL~k~~gi~y--t~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv 175 (578)
T KOG0436 105 -------ELCDRISQSFRQLWKDAGIAY--TKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKV 175 (578)
T ss_pred -------HHHHHHHHHHHHHHHHHCCCH--HHEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCHHHH
T ss_conf -------888665199999999829633--42122489108999999999998678365202351686053002878887
Q ss_pred HCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECC
Q ss_conf 54146876699996530453000124555554424568871699982674010102444444100012311154233202
Q gi|254780933|r 193 IQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPI 272 (947)
Q Consensus 193 ~~~~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl 272 (947)
.+..... |+
T Consensus 176 ~k~p~~~-----------------------------------------------------------------gk------ 184 (578)
T KOG0436 176 LKNPCPP-----------------------------------------------------------------GK------ 184 (578)
T ss_pred HCCCCCC-----------------------------------------------------------------CC------
T ss_conf 1388999-----------------------------------------------------------------85------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 48657321000034212232032124778556566430465311101677752136654445554346554655531001
Q gi|254780933|r 273 VGRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEG 352 (947)
Q Consensus 273 ~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 352 (947)
+|.+
T Consensus 185 -----------~vsm----------------------------------------------------------------- 188 (578)
T KOG0436 185 -----------VVSM----------------------------------------------------------------- 188 (578)
T ss_pred -----------EEEE-----------------------------------------------------------------
T ss_conf -----------4540-----------------------------------------------------------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHH
Q ss_conf 51233448889988887643332102232223566655324443122212145420233343200244112144311356
Q gi|254780933|r 353 LDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYY 432 (947)
Q Consensus 353 ~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~ 432 (947)
-||.||+++.-+-+|.++.++.+++.+++..+.--+.|+.+.+...
T Consensus 189 ----------------------------------Esg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl 234 (578)
T KOG0436 189 ----------------------------------ESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVL 234 (578)
T ss_pred ----------------------------------CCCCCEEEECCCCEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf ----------------------------------4689426761565010087551289999844997467607788999
Q ss_pred HHHH-CCCCCCCCC--CC-CCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 7641-011123212--35-4563102698389988765762344542034556787765554100256888831018824
Q gi|254780933|r 433 EWLE-NIQPWCISR--QI-WWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDE 508 (947)
Q Consensus 433 ~wl~-~~~DW~ISR--qr-~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 508 (947)
.||+ +++|-.||| +| -||+|+|= ++ .
T Consensus 235 ~~lktglpDlSISRpsarl~WGIPvP~---dd-----------------------------------------------s 264 (578)
T KOG0436 235 SWLKTGLPDLSISRPSARLDWGIPVPG---DD-----------------------------------------------S 264 (578)
T ss_pred HHHHCCCCCCCCCCHHHHCCCCCCCCC---CC-----------------------------------------------C
T ss_conf 999737986532570330134888899---98-----------------------------------------------6
Q ss_pred CEECCEEECCCCCCCEECHHHH----HHCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHCCCCCCCCCCCCCCHHC
Q ss_conf 1002202044233320101111----0001234555301245543210----1356777665301211337868520000
Q gi|254780933|r 509 DVLDTWFSSALWPFASLGWPEQ----TAELKTYYPTSVLVTGFDILFF----WVARMMMMGLYFMKDAEGKGIEPFHIVY 580 (947)
Q Consensus 509 DvlDtWfdSg~~p~~~l~~p~~----~~e~~~~~P~d~~~~G~Di~r~----W~~~~l~~~~~l~~~~~~~~~~Pfk~v~ 580 (947)
-+.-+|||.=+=+.+++|||.+ +.++..+||+.+++.|+||+|| |++++|..++. +| +.|+
T Consensus 265 QtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGlp----------lP-~~I~ 333 (578)
T KOG0436 265 QTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGLP----------LP-KMIF 333 (578)
T ss_pred CEEEEEHHHHHHHHHHHCCCCHHCCCCCEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCC----------CC-CEEE
T ss_conf 269875998865788606882102400015237875123201445664554518999866999----------86-1798
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHHHC---
Q ss_conf 14431000122554312456530233202540344454312335567754341101110--0001234443333202---
Q gi|254780933|r 581 MHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGY--RNFITKFWNAIRFSKM--- 655 (947)
Q Consensus 581 ~hG~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~--r~f~nKLwNa~rf~~~--- 655 (947)
+||+-. .+|.|||||+||||||.+++++||+|++|||++..+.++.|.+|+++.+.-. ..+.++|.|...-+.+
T Consensus 334 vHghwt-~ngmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkl 412 (578)
T KOG0436 334 VHGHWT-KNGMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKL 412 (578)
T ss_pred EEEEEE-ECCEECCHHHCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 841265-4222102120464688999988384415667555352078888129999999999999999899888752135
Q ss_pred CCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC-HHHHH
Q ss_conf 44457767-67743331555677999999998889987531001024577765310013688986476530567-14443
Q gi|254780933|r 656 KNARHSVS-FVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKD-SELVS 733 (947)
Q Consensus 656 ~~~~~~~~-~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~~-~~~~~ 733 (947)
+....... ..+.......+--+.+.++++.+.+.++|++|++..|++++...+.. .|-|+...+|.....+ .....
T Consensus 413 n~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~--~ntlvq~~aPWkl~~dsq~~~~ 490 (578)
T KOG0436 413 NISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNA--GNTLVQQRAPWKLFKDSQVSAE 490 (578)
T ss_pred CHHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH--HHHHHHHCCCCEECCCCCCCHH
T ss_conf 70015630024774255314528999997589998540333099999999999975--3156650687021114673689
Q ss_pred HHHH---HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 2100---01456764034567744899999997435666
Q gi|254780933|r 734 ETLS---CFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQD 769 (947)
Q Consensus 734 ~~~~---~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~ 769 (947)
.... +...||+.+.+||+|+||-.+.++..+|+-..
T Consensus 491 ~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvsk 529 (578)
T KOG0436 491 ELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVSK 529 (578)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCH
T ss_conf 999999999999999999872356536799998709874
No 33
>cd00814 MetRS_core This is the catalytic core domain of methionine tRNA synthetase (MetRS). This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and a anti-codon binding domain functions as a monomer. However, in some species, the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion that IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=0 Score=385.56 Aligned_cols=309 Identities=26% Similarity=0.423 Sum_probs=227.6
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHH
Q ss_conf 08997284499998654378896779999987670898356778815454089999999976745998777798999999
Q gi|254780933|r 38 VFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEK 117 (947)
Q Consensus 38 ~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~ 117 (947)
+|+++.||||+||.|||||++++++.|++.||.|++||+|.++.|+|.||.+|+.++.+ .+.+.
T Consensus 1 ~~~v~~~~Ptv~g~lHiGHar~~v~~Dil~R~lr~~G~~V~~vt~~Dd~~~kIi~kA~~-----~g~~~----------- 64 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE-----EGVTP----------- 64 (319)
T ss_pred CEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH-----CCCCH-----------
T ss_conf 98996899878898553306889999999999996599569968777870899999998-----39987-----------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCCC
Q ss_conf 99999999999999999808366427981158867999999999999988943313320220377678014868654146
Q gi|254780933|r 118 VWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEV 197 (947)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~~ 197 (947)
.++++++.+.+.++|++||+. ++....|++|.+...++..|.+|.++|++|++...++||+.|+..+++
T Consensus 65 -~el~~~y~~~~~~~~~~L~I~--~d~~~r~~~~~~~~~v~~~i~~L~~~G~~y~~~~~~~y~~~~~~~~~e-------- 133 (319)
T cd00814 65 -QELCDKYHEIFKELFKWLNIS--FDYFGRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPE-------- 133 (319)
T ss_pred -HHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCCCE--------
T ss_conf -999999999999999984998--786766788068999999999999789888841026365887645646--------
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCCC
Q ss_conf 87669999653045300012455555442456887169998267401010244444410001231115423320248657
Q gi|254780933|r 198 DGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLI 277 (947)
Q Consensus 198 ~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~i 277 (947)
T Consensus 134 -------------------------------------------------------------------------------- 133 (319)
T cd00814 134 -------------------------------------------------------------------------------- 133 (319)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 32100003421223203212477855656643046531110167775213665444555434655465553100151233
Q gi|254780933|r 278 PIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFA 357 (947)
Q Consensus 278 pi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 357 (947)
T Consensus 134 -------------------------------------------------------------------------------- 133 (319)
T cd00814 134 -------------------------------------------------------------------------------- 133 (319)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHH-
Q ss_conf 4488899888876433321022322235666553244431222121454202333432002441121443113567641-
Q gi|254780933|r 358 ARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLE- 436 (947)
Q Consensus 358 a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~- 436 (947)
++-+.+||+++.++++.+.+.+++......|+..++...+|+.
T Consensus 134 ------------------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (319)
T cd00814 134 ------------------------------------WREEEHYFFRLSKFQDKLLEWLEENPDFIWPENARNEVLSWLKE 177 (319)
T ss_pred ------------------------------------EEECCCEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC
T ss_conf ------------------------------------64226378788997899999996098764680577888776543
Q ss_pred CCCCCCCCCCC-CCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCEE
Q ss_conf 01112321235-45631026983899887657623445420345567877655541002568888310188241002202
Q gi|254780933|r 437 NIQPWCISRQI-WWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWF 515 (947)
Q Consensus 437 ~~~DW~ISRqr-~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtWf 515 (947)
+++||||||++ .||+|+|-. .+ .++-+||
T Consensus 178 ~~~d~~isR~~~~WG~~~P~~---~~-----------------------------------------------~~~yvW~ 207 (319)
T cd00814 178 GLKDLSITRDLFKWGIPVPLD---PD-----------------------------------------------KVIYVWF 207 (319)
T ss_pred CCCCHHHCCCCCCCCCCCCCC---CC-----------------------------------------------CEEECCH
T ss_conf 777200103555458988898---88-----------------------------------------------5430021
Q ss_pred ECCCCCCCEECHHHHH----HCCCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 0442333201011110----0012345553012455432101----3567776653012113378685200001443100
Q gi|254780933|r 516 SSALWPFASLGWPEQT----AELKTYYPTSVLVTGFDILFFW----VARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRD 587 (947)
Q Consensus 516 dSg~~p~~~l~~p~~~----~e~~~~~P~d~~~~G~Di~r~W----~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld 587 (947)
||-.-+.+..+++... .......+.++...|+|++.+| .+.++. .+..+++.+++|||+..
T Consensus 208 da~~gy~~~~~~~~~~~~~~~~~~~~~~~~ih~~G~Di~~~H~~~~~a~~~a-----------~~~~~~~~~~~~g~l~~ 276 (319)
T cd00814 208 DALIGYISATGYYTDEWGNSWWWNDPWPELVHFIGKDIVPFHAIYWPAMLLG-----------AGLPLPTRIFAHGYLTV 276 (319)
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH-----------CCCCCCCEEEECCEEEE
T ss_conf 0123400014666665687644456884126784476431888789999985-----------69987868887023998
Q ss_pred HHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 01225543124565302332025403444543123355677543
Q gi|254780933|r 588 KNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINL 631 (947)
Q Consensus 588 ~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~f 631 (947)
+|+|||||+||+|++.+++++||+|++||||++.+|.++|.||
T Consensus 277 -~GeKMSKSlGN~i~~~dll~~~~~d~lR~~lls~~p~~~~~~F 319 (319)
T cd00814 277 -EGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred -CCEECCCCCCCCCCHHHHHHHCCCHHEHHHHHCCCCCCCCCCC
T ss_conf -9946377299744599999877913566877616888899999
No 34
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=100.00 E-value=1.6e-37 Score=292.73 Aligned_cols=175 Identities=22% Similarity=0.408 Sum_probs=151.3
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 341101-110000123444333320244457----767677433315556779999999988899875310010245777
Q gi|254780933|r 631 LDLERI-AGYRNFITKFWNAIRFSKMKNARH----SVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLY 705 (947)
Q Consensus 631 fs~~~i-~~~r~f~nKLwNa~rf~~~~~~~~----~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~ 705 (947)
|+++++ +++|||+|||||++||+.++.... .....+....+.+||||+++++.++++|+++|++|+|+.|++.+|
T Consensus 1 F~e~~v~e~~R~f~nklwNa~RF~~~~~~~~~~~~~~~~~~~~~~~~~D~WIls~l~~~~~~v~~~~~~y~f~~a~~~l~ 80 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL 80 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 98889999983589999989999996221017995434556010558899999999999999999998011999999999
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCC
Q ss_conf 65310013688986476530567-14443210001456764034567744899999997435666767565366357878
Q gi|254780933|r 706 RFVWDELCDWYVEFIKSILNQKD-SELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPS 784 (947)
Q Consensus 706 ~F~~~~~~~~Yie~~K~~l~~~~-~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~ 784 (947)
+|+ ++|||||||++|+++++++ +..++.++.||++||+.+++||||||||+||||||.|.+..+ ...+|||+++||+
T Consensus 81 ~F~-~~l~~wYie~~K~rl~~~~~~~~~~~a~~~L~~vL~~~l~ll~P~~PFitEeiwq~l~~~~~-~~~eSVhl~~~P~ 158 (183)
T cd07961 81 EFI-DELTNWYIRRNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELG-DAPESVHLLDWPE 158 (183)
T ss_pred HHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC-CCCCCEECCCCCC
T ss_conf 999-99989999998899970566388899999999999999997576402439999998602468-9888032006899
Q ss_pred CC--CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 77--477898999999999999999
Q gi|254780933|r 785 LI--IDDSESIEEVNWIIDLISKVR 807 (947)
Q Consensus 785 ~~--~~d~~~~~~~~~~~~ii~~iR 807 (947)
+. ..|+++++.|+.++++|+.+|
T Consensus 159 ~~~~~~d~~le~~~~~l~~ii~~iR 183 (183)
T cd07961 159 VDESLIDEELEEAMELVREIVELGR 183 (183)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 8810269999999999999999759
No 35
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=100.00 E-value=2.5e-34 Score=269.33 Aligned_cols=172 Identities=25% Similarity=0.368 Sum_probs=148.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 411011100001234443333202444577676--774333155567799999999888998753100102457776531
Q gi|254780933|r 632 DLERIAGYRNFITKFWNAIRFSKMKNARHSVSF--VPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVW 709 (947)
Q Consensus 632 s~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~--~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~ 709 (947)
|.+.+++....+.||||++||+.++..+..... .+...+..+|||||++++++++.|+++|++|+|+.|++.+++|+|
T Consensus 2 s~~iL~~~~e~~rKiwNt~RF~l~nl~~~~~~~~~~~~~~l~~lD~wiLs~l~~~~~~v~~~~~~y~f~~~~~~l~~F~~ 81 (180)
T cd07960 2 SDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCT 81 (180)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 88999999999999999999999863799943345892228798999999999999999999983899999999999940
Q ss_pred CCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC-
Q ss_conf 001368898647653056--71444321000145676403456774489999999743566676756536635787877-
Q gi|254780933|r 710 DELCDWYVEFIKSILNQK--DSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLI- 786 (947)
Q Consensus 710 ~~~~~~Yie~~K~~l~~~--~~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~- 786 (947)
++|||||||++|+++|++ ++..++++++||+++|++++++|||||||+||||||++++.. ..+|||+++||++.
T Consensus 82 ~~ls~~Yle~~K~rly~~~~~~~~r~~~~~~L~~vl~~~l~llaPi~Pf~tEeiw~~l~~~~---~~~Si~l~~~P~~~~ 158 (180)
T cd07960 82 VDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEK---KEESVFLEDWPELPE 158 (180)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC---CCCCEEECCCCCCCC
T ss_conf 21035999997797615888838999999999999999898744000453999998756689---999757148999980
Q ss_pred -CCCHHHHHHHHHHHHHHHHH
Q ss_conf -47789899999999999999
Q gi|254780933|r 787 -IDDSESIEEVNWIIDLISKV 806 (947)
Q Consensus 787 -~~d~~~~~~~~~~~~ii~~i 806 (947)
..|+++++.|+.++++.+++
T Consensus 159 ~~~d~~le~~~~~l~~ir~~v 179 (180)
T cd07960 159 EWKDEELEEKWEKLLALRDEV 179 (180)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
T ss_conf 108999999999999999875
No 36
>pfam01406 tRNA-synt_1e tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases.
Probab=100.00 E-value=7.5e-34 Score=265.84 Aligned_cols=119 Identities=13% Similarity=0.105 Sum_probs=96.3
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHH
Q ss_conf 99808997284499998654378896779999987670898356778815454089999999976745998777798999
Q gi|254780933|r 35 GSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAF 114 (947)
Q Consensus 35 ~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f 114 (947)
++-+|.+..|-.| +.+||||+++++..|+++||+|++|++|.|..|.|-||-+|+.+++++ +.+.
T Consensus 8 ~~v~~YicgPt~Y--~~pHIGHa~t~I~~Dvi~R~~r~~G~~V~fv~g~ddhgdKI~~~A~~~-----g~~p-------- 72 (301)
T pfam01406 8 GKVNMYVCGPTVY--DDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKIIKRAQQQ-----GESF-------- 72 (301)
T ss_pred CEEEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH-----CCCH--------
T ss_conf 9378997899068--997522336899999999999974994699967786317999999980-----9865--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 9999999999999999999980836642798115886799999999999998894331332
Q gi|254780933|r 115 IEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKR 175 (947)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~ 175 (947)
+++++++.+.+++.+++|++..+-.. -.|++ +...++..+.+|.++|.||.+..
T Consensus 73 ----~e~~d~~~~~F~~~~~~L~I~~~d~~-~rtTe--hi~~v~~~i~~L~~kG~~Y~~~~ 126 (301)
T pfam01406 73 ----RELAARFITAYTKDMDALNVLPPDLE-PRVTE--HIDEIIEFIERLIKKGYAYVSDN 126 (301)
T ss_pred ----HHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCC--CHHHHHHHHHHHHHCCCEEECCC
T ss_conf ----37999999999988998498289868-77543--57999999999997797687269
No 37
>KOG1247 consensus
Probab=100.00 E-value=4.4e-33 Score=260.22 Aligned_cols=493 Identities=18% Similarity=0.252 Sum_probs=327.4
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 0899728449999865437889677-999998767089835677881545408999999997674599877779899999
Q gi|254780933|r 38 VFCIAMPPPNVTGSLHMGHAFNTTI-QDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIE 116 (947)
Q Consensus 38 ~f~~~~ppP~~nG~lHiGH~~~~t~-~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~ 116 (947)
...+.-.-||+|..+|+|..-.-++ +||+|||.+++|++.++.-|.|.-|.++|.++ .+.+.++.
T Consensus 15 nilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetka-----leeg~tP~--------- 80 (567)
T KOG1247 15 NILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKA-----LEEGLTPQ--------- 80 (567)
T ss_pred CEEEECCCCEECCCCCCCCEEEEEEEHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHH-----HHCCCCHH---------
T ss_conf 6335125320216653366466776442301236677874478515665404667999-----87569878---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 99999999999999999980836642798115886799999999999998894331332022037767801486865414
Q gi|254780933|r 117 KVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKE 196 (947)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~ 196 (947)
+..+++.+..+.....+++++|... +|+.+.--+.+|.+|.+||++|+.-...--+.||..|++-|||-.|+
T Consensus 81 ---elcdKyh~ihk~vy~Wf~IdfD~fg--rtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~ve--- 152 (567)
T KOG1247 81 ---ELCDKYHGIHKVVYDWFKIDFDEFG--RTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVE--- 152 (567)
T ss_pred ---HHHHHCCHHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHHHHCHHHCCCCCCCEEEEEEEHHHCCCCCCHHHH---
T ss_conf ---9887221267888875156621037--60671132778988625211577110001157752112403404430---
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCC
Q ss_conf 68766999965304530001245555544245688716999826740101024444441000123111542332024865
Q gi|254780933|r 197 VDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRL 276 (947)
Q Consensus 197 ~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~ 276 (947)
|+ +|.+|-
T Consensus 153 --------------------------------------------------------------------g~---cp~C~y- 160 (567)
T KOG1247 153 --------------------------------------------------------------------GK---CPFCGY- 160 (567)
T ss_pred --------------------------------------------------------------------CC---CCCCCC-
T ss_conf --------------------------------------------------------------------33---788877-
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 73210000342122320321247785565664304653111016777521366544455543465546555310015123
Q gi|254780933|r 277 IPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCF 356 (947)
Q Consensus 277 ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 356 (947)
+| ++.
T Consensus 161 --------------------------d~------------------ARG------------------------------- 165 (567)
T KOG1247 161 --------------------------DD------------------ARG------------------------------- 165 (567)
T ss_pred --------------------------CC------------------CCC-------------------------------
T ss_conf --------------------------65------------------320-------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCC--CCEECCCCCHHHHHH
Q ss_conf 344888998888764333210223222356665532444312221214542023334320024--411214431135676
Q gi|254780933|r 357 AARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGC--LSFIPQSWDKSYYEW 434 (947)
Q Consensus 357 ~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~--i~~~P~~~~~~~~~w 434 (947)
+.+...|.++..- ...-|.|--|...-+++.+..-|++++++..++-+.+.... -.|-+ +.++....|
T Consensus 166 -------Dqcd~cG~l~N~~--el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~-Na~~it~sW 235 (567)
T KOG1247 166 -------DQCDKCGKLVNAA--ELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQ-NAQNITRSW 235 (567)
T ss_pred -------HHHHHHHHHCCHH--HHCCCCHHEECCCCEEEEEEEEEEEHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHH
T ss_conf -------5666665423787--723852010026773554127998757767899999973054577761-167899999
Q ss_pred H-HCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECC
Q ss_conf 4-101112321235456310269838998876576234454203455678776555410025688883101882410022
Q gi|254780933|r 435 L-ENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDT 513 (947)
Q Consensus 435 l-~~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDt 513 (947)
| +++++.||.|.+-||+|+|.=.. ...||-+
T Consensus 236 lk~gl~pRCiTRDLkWGtpVPle~f------------------------------------------------k~KVfYV 267 (567)
T KOG1247 236 LKDGLKPRCITRDLKWGTPVPLEKF------------------------------------------------KDKVFYV 267 (567)
T ss_pred HHCCCCCCCCCCCCCCCCCCCHHHH------------------------------------------------CCCEEEE
T ss_conf 9746665200022556887674551------------------------------------------------6627999
Q ss_pred EEECCCCCCCEECHHHHHHCCCCCCCCC----CC-CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCH
Q ss_conf 0204423332010111100012345553----01-245543210135677766530121133786852000014431000
Q gi|254780933|r 514 WFSSALWPFASLGWPEQTAELKTYYPTS----VL-VTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDK 588 (947)
Q Consensus 514 WfdSg~~p~~~l~~p~~~~e~~~~~P~d----~~-~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~ 588 (947)
|||.-+=+.+.. ..-.+++++||-.. ++ .-|+|-+-|| +.|+-+..+--..++. --+++-..-... -
T Consensus 268 WFDA~IGYlsit--~~yt~ew~kWwknpE~v~LyqFmgKDNVpFH--tviFP~s~lgt~en~t---~v~~l~aTeYLn-y 339 (567)
T KOG1247 268 WFDAPIGYLSIT--KNYTDEWEKWWKNPENVELYQFMGKDNVPFH--TVIFPCSQLGTEENYT---VVHHLSATEYLN-Y 339 (567)
T ss_pred EECCCCEEEEEE--HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCE--EEECCHHHHCCCCCCH---HHEEECHHHHHC-C
T ss_conf 973751378850--6666789998469744039887466777614--6641245416777733---210001544200-2
Q ss_pred HHHHHHHHCCCCCCHHHHHC-CCCHHHHHHHHHCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 12255431245653023320-254034445431233556775434110111--000012344433332024445776767
Q gi|254780933|r 589 NGQKMSKSKGNVVDPIDVID-QYGADALRFYFSIMAVQGRDINLDLERIAG--YRNFITKFWNAIRFSKMKNARHSVSFV 665 (947)
Q Consensus 589 ~G~KMSKS~GNvidp~e~i~-~yGaDalR~~l~~~~~~~~D~~fs~~~i~~--~r~f~nKLwNa~rf~~~~~~~~~~~~~ 665 (947)
+..|.|||+|-+|--.++.+ .-++|..||||+..-|.+.|.+||++.+.. ...++|-|.|-..-+.........+.+
T Consensus 340 E~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~l~fv~~~~~g~V 419 (567)
T KOG1247 340 EDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRVLKFVAAKYNGVV 419 (567)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 46740145652220554335799888889887522676667767589999873599998888899999999987608716
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 743331555677999999998889987531001024577765310013688986476-5305671444321000145676
Q gi|254780933|r 666 PQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKS-ILNQKDSELVSETLSCFSYVLY 744 (947)
Q Consensus 666 ~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~-~l~~~~~~~~~~~~~~l~~vl~ 744 (947)
|.-.+..-|+-+++..+....+..++||.-++++|++.++... ...|.||...+. .++..+.+....+..+...+..
T Consensus 420 p~~~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is--~~GNqylQ~~~~~k~~~~~r~r~~~vi~~a~nii~ 497 (567)
T KOG1247 420 PEMELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEIS--RRGNQYLQENTDNKLYEESRQRAGTVIGLAANIIY 497 (567)
T ss_pred CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCCCCCHHHHCCCCCCEEEEHHHHHHH
T ss_conf 6303068758899999999999999988778999999999999--75208874142000103220005526433668999
Q ss_pred HHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 40345677448999999974356
Q gi|254780933|r 745 NVCKLLHPIIPFVTEDLYSHVSP 767 (947)
Q Consensus 745 ~~l~ll~P~~PfitEeiw~~l~~ 767 (947)
-+..||+|+||-++.+|...++-
T Consensus 498 lvs~ll~P~mP~~s~~I~kqlnl 520 (567)
T KOG1247 498 LVSVLLYPYMPTTSAEILKQLNL 520 (567)
T ss_pred HHHHHHCCCCCCCHHHHHHHHCC
T ss_conf 99998636566206999998498
No 38
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.97 E-value=1.7e-31 Score=248.62 Aligned_cols=135 Identities=36% Similarity=0.751 Sum_probs=126.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 34110111000012344433332024445776767743331555677999999998889987531001024577765310
Q gi|254780933|r 631 LDLERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWD 710 (947)
Q Consensus 631 fs~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~ 710 (947)
||+++++++++|+|||||++||+.++.........+......+|+||+++++++++.|+++|++|+|++|++.|++|+|+
T Consensus 1 ~~e~~i~~~~rf~nKlwN~~rf~~~~~~~~~~~~~~~~~~~~~Dkwil~~l~~~~~~i~~~~~~~~f~~a~~~l~~F~~~ 80 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWN 80 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 98999899999999999999999875453687546610077999999999999999999999865899999999999899
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 0136889864765305671444321000145676403456774489999999743
Q gi|254780933|r 711 ELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHV 765 (947)
Q Consensus 711 ~~~~~Yie~~K~~l~~~~~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l 765 (947)
+||+||||++|++++.+++..+.+++.+|+++|+.+++||||||||+||||||.|
T Consensus 81 ~ls~~Yie~~K~rl~~~~~~~~~~~~~~l~~~l~~~l~llaP~~PfitEeiw~~l 135 (135)
T cd07962 81 DFCDWYLELVKPRLYGEDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9989999997998729978999999999999999999999878799999998439
No 39
>pfam08264 Anticodon_1 Anticodon-binding domain. This domain is found valyl and leucyl tRNA synthetases. It binds to the anticodon of the tRNA.
Probab=99.96 E-value=3.2e-29 Score=232.04 Aligned_cols=145 Identities=30% Similarity=0.629 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 56779999999988899875310010245777653100136889864765305671444321000145676403456774
Q gi|254780933|r 674 NKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPI 753 (947)
Q Consensus 674 Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~~~~~~~~~~~~l~~vl~~~l~ll~P~ 753 (947)
||||++++++++++++++|++|+|++|++.+|+|+|++|||||+|++|++++++++....+++.+|+++|+.+++|||||
T Consensus 1 Dkwil~~l~~~i~~v~~~~e~~~f~~a~~~l~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~~~~~l~~~l~~~l~ll~P~ 80 (148)
T pfam08264 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEDPDESKRRATTLYEVLETLLRLLAPF 80 (148)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999999998079999999999999999989999974052147880677779999999999999998331
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 489999999743566676756536635787877--47789899999999999999988898089977746599
Q gi|254780933|r 754 IPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLI--IDDSESIEEVNWIIDLISKVRSIRTEMNVPLKAVVPLV 824 (947)
Q Consensus 754 ~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~--~~d~~~~~~~~~~~~ii~~iR~~R~~~~i~~k~~i~i~ 824 (947)
|||+|||||+.++. .+||+.++||++. ..+...++.++.++++++.+|++|++.+|+++.++.+.
T Consensus 81 ~PfitEeiw~~~~~------~~si~~~~wP~~~~~~~~~~~~~~~~~~~~vi~~i~~~R~~~~i~~~~~~~v~ 147 (148)
T pfam08264 81 MPFITEELWQKLGL------KGSIHLAPWPEADEEALDEELEEEFELRQEIVQAIRKLRSELKIKKSLPLEVI 147 (148)
T ss_pred HHHHHHHHHHHCCC------CCEEECCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 08889999986799------98163049999990106999999999999999999999986798989878510
No 40
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.94 E-value=2e-24 Score=196.99 Aligned_cols=345 Identities=22% Similarity=0.268 Sum_probs=216.2
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 089972844999986543788967799999876708983567788-1545408999999997674599877779899999
Q gi|254780933|r 38 VFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPG-TDHAGIATQITVESRLFAQSSLTREDIGRDAFIE 116 (947)
Q Consensus 38 ~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G-~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~ 116 (947)
.-.++..=|++=+.+||||+++++..|++.||.|..||+|.|.++ +|. +=++.++ ..+.+.+.
T Consensus 23 ~v~~Y~CGPTVYd~~HiG~~r~~v~~D~l~R~l~~~g~~v~~v~NiTDi-----dDKii~~-a~~~~~~~---------- 86 (460)
T PRK00260 23 KVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYRGYKVTYVRNITDI-----DDKIIKR-ANEEGESI---------- 86 (460)
T ss_pred EEEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC-----HHHHHHH-HHHHCCCH----------
T ss_conf 5889967984888732000308999999999999649934999823754-----1999999-99819699----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 99999999999999999980836642798115886799999999999998894331332022037767801486865414
Q gi|254780933|r 117 KVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKE 196 (947)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~ 196 (947)
+++++++.+.+.++++.||+.--=..+..| +|...+.....+|.++|+.|....-|++|...-. .
T Consensus 87 --~~~~~~~~~~f~~d~~~L~i~~p~~~~r~t---~~i~~~i~~i~~l~~~g~aY~~~~~vyFdv~~~~-------~--- 151 (460)
T PRK00260 87 --KELTERYIAAFHEDMDALGVLRPDIEPRAT---EHIPEIIELIERLIEKGHAYEADGDVYFDVRKFP-------D--- 151 (460)
T ss_pred --HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCHHHHHHHHHHHHHCCCEEEECCEEEECCCCCC-------C---
T ss_conf --999999999999999994899985224301---4799999999999857952884787996355553-------3---
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCC
Q ss_conf 68766999965304530001245555544245688716999826740101024444441000123111542332024865
Q gi|254780933|r 197 VDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRL 276 (947)
Q Consensus 197 ~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~ 276 (947)
|-+|-|.....-..|.+
T Consensus 152 ---------------------------------------------------------------YG~Ls~~~~~~~~~g~r 168 (460)
T PRK00260 152 ---------------------------------------------------------------YGKLSGRNLDDLQAGAR 168 (460)
T ss_pred ---------------------------------------------------------------HHHCCCCCCHHHHCCCC
T ss_conf ---------------------------------------------------------------03005653021211565
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 73210000342122320321247785565664304653111016777521366544455543465546555310015123
Q gi|254780933|r 277 IPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCF 356 (947)
Q Consensus 277 ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 356 (947)
+- ++.+ =.+|.||.+++..
T Consensus 169 v~------~~~~----------K~~p~DFaLWK~~--------------------------------------------- 187 (460)
T PRK00260 169 VE------VAEE----------KRDPLDFVLWKAA--------------------------------------------- 187 (460)
T ss_pred CC------CCCC----------CCCCCCHHHCCCC---------------------------------------------
T ss_conf 67------6634----------4785532212788---------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHH
Q ss_conf 34488899888876433321022322235666553244431222121454202333432002441121443113567641
Q gi|254780933|r 357 AARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLE 436 (947)
Q Consensus 357 ~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~ 436 (947)
..+++
T Consensus 188 -----------------------------------------------------------~~ge~---------------- 192 (460)
T PRK00260 188 -----------------------------------------------------------KPGEP---------------- 192 (460)
T ss_pred -----------------------------------------------------------CCCCC----------------
T ss_conf -----------------------------------------------------------88887----------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCEEE
Q ss_conf 01112321235456310269838998876576234454203455678776555410025688883101882410022020
Q gi|254780933|r 437 NIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFS 516 (947)
Q Consensus 437 ~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtWfd 516 (947)
-|- --||.--|=||-+|.
T Consensus 193 ---~W~----SPWG~GRPGWHIECS------------------------------------------------------- 210 (460)
T PRK00260 193 ---SWD----SPWGKGRPGWHIECS------------------------------------------------------- 210 (460)
T ss_pred ---CCC----CCCCCCCCCCCHHHH-------------------------------------------------------
T ss_conf ---776----988887987422637-------------------------------------------------------
Q ss_pred CCCCCCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCC-CCCCCHHHHHHHH
Q ss_conf 442333201011110001234555301245543210135677766530121133786852000014-4310001225543
Q gi|254780933|r 517 SALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMH-ALVRDKNGQKMSK 595 (947)
Q Consensus 517 Sg~~p~~~l~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~h-G~vld~~G~KMSK 595 (947)
.|....||- +.|++.+|.|++|-|.--=++.+.+++ + .||-+..+| ||+. -+|+||||
T Consensus 211 --aM~~~~LG~-----------~~DIH~GG~DL~FPHHENEiAQs~a~~------~-~~~a~yW~H~g~l~-i~g~KMSK 269 (460)
T PRK00260 211 --AMSTKYLGE-----------TFDIHGGGSDLIFPHHENEIAQSEAAT------G-KPFANYWMHNGFVT-VNGEKMSK 269 (460)
T ss_pred --HHHHHHCCC-----------CCEEEECCCCCCCCCCCCHHHHHHHHH------C-CCCCCEEEEEEEEE-ECCEEEEC
T ss_conf --999987599-----------754762452677899610999998864------8-98652456510576-36717503
Q ss_pred HCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 12456530233202540344454312335567754341101110000123444333320244457767677433315556
Q gi|254780933|r 596 SKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNK 675 (947)
Q Consensus 596 S~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~~~~~~~~~~Dr 675 (947)
|+||++++.+++++|+++++||++++.... ..++||++.+++.++.+.||.++.+-+.... . ..
T Consensus 270 SlgN~iti~dll~~y~~~~lR~~lLs~hYR-~pl~fs~e~L~~a~~~l~rl~~~~~~~~~~~-----~---~~------- 333 (460)
T PRK00260 270 SLGNFFTIRDLLKKYDPEVLRFFLLSAHYR-SPLNFSEEALEEAKKALERLYNALRNLEPAV-----A---PA------- 333 (460)
T ss_pred CCCCCCCHHHHHHHHCHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-----C---CC-------
T ss_conf 578700199999870779999999854689-9667799999999999999999999755402-----5---53-------
Q ss_pred HHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHCCHHHHHH
Q ss_conf 77999999998889987-5310010245777653100136889
Q gi|254780933|r 676 WIIKRLATVINDVTVGM-ENHRFNDVSAVLYRFVWDELCDWYV 717 (947)
Q Consensus 676 wils~l~~~i~~v~~~~-e~~~f~~a~~~i~~F~~~~~~~~Yi 717 (947)
....+.+.+.++| ++++...|+..|++++-. .|-|+
T Consensus 334 ----~~~~~~~~F~~AL~DDLNTP~Ala~Lfelvk~--iN~~l 370 (460)
T PRK00260 334 ----GGEEFEERFIEAMDDDFNTPEALAVLFELAKE--INRLL 370 (460)
T ss_pred ----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHHH
T ss_conf ----22789999999875227869999999999999--99875
No 41
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.90 E-value=6.6e-24 Score=193.19 Aligned_cols=117 Identities=20% Similarity=0.365 Sum_probs=103.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCH
Q ss_conf 11011100001234443333202444577676774333155567799999999888998753100102457776531001
Q gi|254780933|r 633 LERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDEL 712 (947)
Q Consensus 633 ~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~ 712 (947)
+++++|+|+|+|||||++||+.++........ +...+..+||||++++++++++|+++|++|+|++|++.||+|+|++
T Consensus 1 eerve~~r~F~nKLWNa~rF~~~~~~~~~~~~-~~~~l~~~DrWIls~l~~~i~~v~~~~e~y~f~~a~~~l~~F~w~~- 78 (117)
T cd07375 1 EERLKQARAFLNRLYRLLSFFRKALGGTQPKW-DNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNEL- 78 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_conf 99999999999899999999985688788865-6322776279999999899999999999278999999999999936-
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 368898647653056714443210001456764034567744
Q gi|254780933|r 713 CDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPII 754 (947)
Q Consensus 713 ~~~Yie~~K~~l~~~~~~~~~~~~~~l~~vl~~~l~ll~P~~ 754 (947)
|||||++|+++++++ .+.+++.+|++||+.+++|||||+
T Consensus 79 -dwYie~~K~r~~~e~--~~~~~~~~L~~vl~~~lkLlhPFt 117 (117)
T cd07375 79 -NWYLDELKPALQTEE--LREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred -HHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf -999999656304827--579999999999999999819999
No 42
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.6e-20 Score=166.91 Aligned_cols=146 Identities=19% Similarity=0.335 Sum_probs=112.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCC-CCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHH
Q ss_conf 53012455432101356777665301211337868520000144-31000122554312456530233202540344454
Q gi|254780933|r 540 TSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHA-LVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFY 618 (947)
Q Consensus 540 ~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG-~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~ 618 (947)
.|.+.+|.|++|-|---=++.|-+.+ |..||-+..+|. ||. -+|+|||||+||++...+++++|+..++||+
T Consensus 222 ~DIHgGG~DLiFPHHENEiAQsea~~------g~~~~a~yWmH~G~l~-i~geKMSKSLGNfiti~d~l~~~~p~~lR~~ 294 (464)
T COG0215 222 FDIHGGGSDLIFPHHENEIAQSEAAT------GVKPFAKYWMHNGFLN-IDGEKMSKSLGNFITVRDLLKKYDPEVLRLF 294 (464)
T ss_pred CCEECCCCCCCCCCCCCHHHHHHHHH------CCCCCEEEEEECCEEE-ECCCCCCCCCCCEEEHHHHHHHCCHHHHHHH
T ss_conf 51246850255888630899987642------9976005868826452-4672765235776679999865487999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHCC
Q ss_conf 31233556775434110111000012344433332024445776767743331555677999999998889987-53100
Q gi|254780933|r 619 FSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGM-ENHRF 697 (947)
Q Consensus 619 l~~~~~~~~D~~fs~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~-e~~~f 697 (947)
+++.... ..++||++.++..++.+.+|.|+.+.+......... . .......++.++| ++|++
T Consensus 295 lls~HYR-~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~~~~-----~-----------~~~~~~~~f~~al~DDfnt 357 (464)
T COG0215 295 LLSSHYR-SPLDFSEELLEEAKKALERLYNALRRLRDLAGDAEL-----A-----------DLKEFEARFREALDDDFNT 357 (464)
T ss_pred HHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----C-----------HHHHHHHHHHHHHHHCCCC
T ss_conf 9987757-765668999999999999999999988740132221-----1-----------0678999999998722580
Q ss_pred CHHHHHHHHHHH
Q ss_conf 102457776531
Q gi|254780933|r 698 NDVSAVLYRFVW 709 (947)
Q Consensus 698 ~~a~~~i~~F~~ 709 (947)
..|+..+++++-
T Consensus 358 ~~al~~l~~l~~ 369 (464)
T COG0215 358 PKALAVLFELAK 369 (464)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999999
No 43
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.83 E-value=5e-19 Score=157.53 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=104.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCC-CCCCHHHHHHHHHCCCCCCHHHHHCC-CCHHHHH
Q ss_conf 553012455432101356777665301211337868520000144-31000122554312456530233202-5403444
Q gi|254780933|r 539 PTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHA-LVRDKNGQKMSKSKGNVVDPIDVIDQ-YGADALR 616 (947)
Q Consensus 539 P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG-~vld~~G~KMSKS~GNvidp~e~i~~-yGaDalR 616 (947)
+.|++.+|.|++|-|---=++.+-+++ |..||-+..+|. || .-+|+|||||+||++.+.+++++ |.+.++|
T Consensus 241 ~~DIHgGG~DL~FPHHENEiAQsea~~------g~~~~a~yWmH~g~l-~~~geKMSKSlGN~~ti~dl~~~g~~p~~iR 313 (411)
T TIGR03447 241 GFDIQGGGSDLIFPHHEFSAAHAEAAT------GVRRMARHYVHAGMI-GLDGEKMSKSLGNLVFVSKLRAAGVDPAAIR 313 (411)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHH------CCCHHHHHHHECCEE-EECCEECCCCCCCEEEHHHHHHCCCCHHHHH
T ss_conf 757878860357888530999999866------887376676530023-1287055666887257999986499899999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHH
Q ss_conf 5431233556775434110111000012344433332024445776767743331555677999999998889987-531
Q gi|254780933|r 617 FYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGM-ENH 695 (947)
Q Consensus 617 ~~l~~~~~~~~D~~fs~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~-e~~ 695 (947)
|++++.-.. .+++|+++.+++.++.+.++..+..-. +.. ....++.++.++| +++
T Consensus 314 ~~lL~~HYR-spl~fs~~~L~~A~~~l~r~~~a~~~~------------~~~-----------~~~~~~~~~~~Al~DDl 369 (411)
T TIGR03447 314 LGLLAGHYR-QDRDWTDAVLAEAEARLARWRAALAAT------------DAP-----------DATDLIARLRQHLANDL 369 (411)
T ss_pred HHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHCC------------CCC-----------CHHHHHHHHHHHHHCCC
T ss_conf 999714489-976889899999999999999987266------------775-----------22679999999986016
Q ss_pred CCCHHHHHHHHHHHC
Q ss_conf 001024577765310
Q gi|254780933|r 696 RFNDVSAVLYRFVWD 710 (947)
Q Consensus 696 ~f~~a~~~i~~F~~~ 710 (947)
+...|+.+|++++..
T Consensus 370 NTp~Ala~l~~~~~~ 384 (411)
T TIGR03447 370 DTPAALAAVDNWAAA 384 (411)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 729999999999999
No 44
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.83 E-value=7.6e-19 Score=156.18 Aligned_cols=141 Identities=19% Similarity=0.153 Sum_probs=103.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHCC-CCHHHHHH
Q ss_conf 55301245543210135677766530121133786852000014431000122554312456530233202-54034445
Q gi|254780933|r 539 PTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQ-YGADALRF 617 (947)
Q Consensus 539 P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvidp~e~i~~-yGaDalR~ 617 (947)
+.|++.+|.|++|-|----++.+-+++ |..||-+..+|+=.+.-+|+|||||+||++.+.+++++ |.++++||
T Consensus 214 ~~DIHgGG~DL~FPHHENEiAQsea~~------g~~~~a~yW~H~g~l~~~geKMSKSlGN~i~i~dl~~~g~~p~~~R~ 287 (384)
T PRK12418 214 GFDIQGGGSDLIFPHHEFSAAHAEAAT------GERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRL 287 (384)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHH------CCCHHHHHHHHHCEEEECCEECCCCCCCEEEHHHHHHCCCCHHHHHH
T ss_conf 767846862565888354999999865------89748788860042668886745668871469999863898799999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHC
Q ss_conf 431233556775434110111000012344433332024445776767743331555677999999998889987-5310
Q gi|254780933|r 618 YFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGM-ENHR 696 (947)
Q Consensus 618 ~l~~~~~~~~D~~fs~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~-e~~~ 696 (947)
++++.-.. .+++|+++.+++.++-+.++..+.+- . . .+ ....+...+.++| ++++
T Consensus 288 ~lL~~hYR-~~l~fs~~~l~~A~~~l~r~~~a~~~-------~--~-~~-------------~~~~~~~~~~~al~DDlN 343 (384)
T PRK12418 288 ALLAGHYR-SDREWTDAVLAEAEARLARWRAATAL-------P--A-GP-------------DAADVVARVREYLADDLD 343 (384)
T ss_pred HHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHC-------C--C-CC-------------CHHHHHHHHHHHHHHCCC
T ss_conf 99705679-97688999999999999999998716-------6--7-88-------------668899999999874265
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 0102457776531
Q gi|254780933|r 697 FNDVSAVLYRFVW 709 (947)
Q Consensus 697 f~~a~~~i~~F~~ 709 (947)
...|+.+|.+++.
T Consensus 344 TP~Ala~l~~l~~ 356 (384)
T PRK12418 344 TPGALAAVDGWAT 356 (384)
T ss_pred HHHHHHHHHHHHH
T ss_conf 5899999999999
No 45
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.78 E-value=2.9e-19 Score=159.28 Aligned_cols=117 Identities=21% Similarity=0.321 Sum_probs=88.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 34110111000012344433332024445776767743331555677999999998889987531001024577765310
Q gi|254780933|r 631 LDLERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWD 710 (947)
Q Consensus 631 fs~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~ 710 (947)
||+++++|+++|++|+||....... ..............|+|+++++++++++|+++|++|+|+.|+..+|+|+ +
T Consensus 1 Wse~gIeg~~rFl~KlW~l~~~~~~----~~~~~~~~~~~~~~d~~i~~~l~~~i~~vt~~~e~~~fN~aia~l~ef~-N 75 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAE----ALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELV-N 75 (117)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH----HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-H
T ss_conf 9800699999999999999998886----3134556544667449999999999999999998522059999999999-9
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 0136889864765305671444321000145676403456774489999999743
Q gi|254780933|r 711 ELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHV 765 (947)
Q Consensus 711 ~~~~~Yie~~K~~l~~~~~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l 765 (947)
.+++ .. ..+ .....++.++|+.+++||||||||+|||||+.|
T Consensus 76 ~l~~-------~~--~~~----~~~~~~~~~~l~~ll~lL~P~~PHiaEElW~~L 117 (117)
T cd07958 76 ALYK-------YK--KKD----AQHAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred HHHH-------HH--CCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9988-------46--144----114999999999999998842479999998539
No 46
>KOG2007 consensus
Probab=99.75 E-value=3.9e-16 Score=136.40 Aligned_cols=168 Identities=14% Similarity=0.139 Sum_probs=121.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCC-CCCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHH
Q ss_conf 530124554321013567776653012113378685200001-4431000122554312456530233202540344454
Q gi|254780933|r 540 TSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYM-HALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFY 618 (947)
Q Consensus 540 ~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~-hG~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~ 618 (947)
.|.+-+|.|+-|-|---=|+.+-+.++... +-+.++ .|++- -+|.|||||++|+|+..+++++|.++++|++
T Consensus 259 lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~------wVnYflHtGhL~-i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~ 331 (586)
T KOG2007 259 LDIHGGGIDLAFPHHENEIAQSEAAFDDSQ------WVNYFLHTGHLT-INGEKMSKSLKNFITIKEALKKYSPRQLRLA 331 (586)
T ss_pred CCEECCCCCCCCCCCCCHHHHHHHHHCCCC------CCEEEEECCEEE-ECCCHHHHHHCCCEEHHHHHHHCCHHHHHHH
T ss_conf 420168504337875208888888763875------512578757366-5111043332041439999976398999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHCC
Q ss_conf 31233556775434110111000012344433332024445776767743331555677999999998889987-53100
Q gi|254780933|r 619 FSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGM-ENHRF 697 (947)
Q Consensus 619 l~~~~~~~~D~~fs~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~-e~~~f 697 (947)
++...- ...++|++..++...++...+-|-+.-+...... ..+.+.....+.-++.++..+...|..++ ++++-
T Consensus 332 fl~~~w-r~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~----~~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT 406 (586)
T KOG2007 332 FLLHQW-RSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRG----AKPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDT 406 (586)
T ss_pred HHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 998775-6767843889999999999999999999999825----42021038589999986003789999998742451
Q ss_pred CHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 102457776531001368898647
Q gi|254780933|r 698 NDVSAVLYRFVWDELCDWYVEFIK 721 (947)
Q Consensus 698 ~~a~~~i~~F~~~~~~~~Yie~~K 721 (947)
..+++.+.+++ ..+|-||....
T Consensus 407 ~~v~~~~~~lv--s~~N~~i~~~~ 428 (586)
T KOG2007 407 PRVMEAIRELV--SQGNAYIRESG 428 (586)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHC
T ss_conf 88999999987--34338888731
No 47
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.71 E-value=1.4e-17 Score=147.04 Aligned_cols=89 Identities=20% Similarity=0.379 Sum_probs=76.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 74333155567799999999888998753100102457776531001368898647653056714443210001456764
Q gi|254780933|r 666 PQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYN 745 (947)
Q Consensus 666 ~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~~~~~~~~~~~~l~~vl~~ 745 (947)
+.+..+.+|+||++++++++++++++|++|+|++|++.++.++++++ +||+++++.. ....+|..+++.
T Consensus 29 ~~~~~~~~Dkw~ls~l~~~i~~~~~a~e~~~fr~a~~~~~~~l~~~~-~~Y~~~~~~~----------~~~~~l~~~l~~ 97 (117)
T cd07959 29 ELEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDL-DWYRERGGAG----------MNKDLLRRFIEV 97 (117)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCC----------CHHHHHHHHHHH
T ss_conf 78889776899999999999999999998788789999999999999-9999984554----------149999999999
Q ss_pred HCCCCCCCHHHHHHHHHHHC
Q ss_conf 03456774489999999743
Q gi|254780933|r 746 VCKLLHPIIPFVTEDLYSHV 765 (947)
Q Consensus 746 ~l~ll~P~~PfitEeiw~~l 765 (947)
+++|||||+||+||||||.|
T Consensus 98 ~~~lLaP~~PhiaEEiW~~l 117 (117)
T cd07959 98 WTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHC
T ss_conf 99998473348699998639
No 48
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=4.5e-14 Score=121.30 Aligned_cols=165 Identities=21% Similarity=0.270 Sum_probs=100.2
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCHHHHHCCCC----------------------HHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 1443100012255431245653023320254----------------------034445431233556775434110111
Q gi|254780933|r 581 MHALVRDKNGQKMSKSKGNVVDPIDVIDQYG----------------------ADALRFYFSIMAVQGRDINLDLERIAG 638 (947)
Q Consensus 581 ~hG~vld~~G~KMSKS~GNvidp~e~i~~yG----------------------aDalR~~l~~~~~~~~D~~fs~~~i~~ 638 (947)
.-|++++.+|.||||..||+|...++++.-| .||+||++++..+ ..++.|+++.+..
T Consensus 372 ~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~-~~~~~Fd~d~~ls 450 (577)
T COG0018 372 GVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSR-DKDYVFDWDKALS 450 (577)
T ss_pred EEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCEEEHHHHHH
T ss_conf 775257787763422488657899999999887666765432115777777524067899886289-9994753999974
Q ss_pred CHH-HH-------HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 000-01-------2344433332024445776767743331555677999999998889987531001024577765310
Q gi|254780933|r 639 YRN-FI-------TKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWD 710 (947)
Q Consensus 639 ~r~-f~-------nKLwNa~rf~~~~~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~ 710 (947)
... -+ .++-+..|=......... ............+-++.+|...-.-+.++.+.++.+..+.-+|++. .
T Consensus 451 fegNt~pYvQYA~ARi~SIlrka~e~~~~~~-~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA-~ 528 (577)
T COG0018 451 FEGNTAPYVQYAHARICSILRKAGEDELDLS-TEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLA-G 528 (577)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-H
T ss_conf 4599721599999999999985444345533-2221010682799999999984999999998569559999999999-9
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHH---HHHHHHHHHHHHCCCC
Q ss_conf 013688986476530567144432---1000145676403456
Q gi|254780933|r 711 ELCDWYVEFIKSILNQKDSELVSE---TLSCFSYVLYNVCKLL 750 (947)
Q Consensus 711 ~~~~~Yie~~K~~l~~~~~~~~~~---~~~~l~~vl~~~l~ll 750 (947)
.|.+||=. + +.+..++++.+.+ .......+|++.+.||
T Consensus 529 ~Fn~fY~~-~-~Vl~~~~~~~~~aRL~L~~a~~~vL~ngL~LL 569 (577)
T COG0018 529 SFNSFYNA-C-PVLGAENEELRAARLALVKATRQVLKNGLDLL 569 (577)
T ss_pred HHHHHHHH-C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999850-8-77789957899999999999999999778760
No 49
>cd00802 class_I_aaRS_core Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.67 E-value=5.7e-17 Score=142.48 Aligned_cols=72 Identities=33% Similarity=0.467 Sum_probs=60.7
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHH
Q ss_conf 97284499998654378896779999987670898356778815454089999999976745998777798999999999
Q gi|254780933|r 41 IAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWE 120 (947)
Q Consensus 41 ~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~ 120 (947)
++.++||+||.||+||+++.++.|+++||. +|.++.|+|+||.|++..+++.. ..|.+
T Consensus 2 i~~~~p~ptG~lHiGh~~~~~~~~~~ar~~-----~~~~~~~idd~~~~~~~~a~~~~-----------------~~~~~ 59 (142)
T cd00802 2 ITRPGPYPTGPLHIGHARTALLNDVLARYG-----NVLFILGIDDTGLPIEDKAEKEG-----------------KLPKE 59 (142)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHC-----CCEEEEEECCCCCCCCCHHHHHC-----------------CCCHH
T ss_conf 141488989964188999999999999981-----99899986579920011678844-----------------48899
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780933|r 121 WKKESGGSILSQLK 134 (947)
Q Consensus 121 ~~~~~~~~~~~~~~ 134 (947)
|++++...++++++
T Consensus 60 ~~~~~~~~~~~~~~ 73 (142)
T cd00802 60 EVEENIEEIKEDLK 73 (142)
T ss_pred HHHHHHHHHHHHCE
T ss_conf 99999999998652
No 50
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.67 E-value=1.5e-12 Score=110.19 Aligned_cols=196 Identities=23% Similarity=0.273 Sum_probs=113.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCC---CCCCCHHHHHHHHHCCCCCCHHHHHCC---------
Q ss_conf 01245543210135677766530121133786852000014---431000122554312456530233202---------
Q gi|254780933|r 542 VLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMH---ALVRDKNGQKMSKSKGNVVDPIDVIDQ--------- 609 (947)
Q Consensus 542 ~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~h---G~vld~~G~KMSKS~GNvidp~e~i~~--------- 609 (947)
+++.|.||. ++|.++......+- ... .. ..++.| |+|.+.+|.|||+.+||+|...|++++
T Consensus 331 I~V~g~dq~-~hf~~l~~~l~~lG----~~~-~~-~~~l~h~~~~lv~~~~~~kMStR~G~~v~L~dlldea~~~a~~~~ 403 (570)
T PRK01611 331 IYVVGADHH-GHFKRLKAALKALG----YDP-EK-LEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVERARELV 403 (570)
T ss_pred EEEECCCHH-HHHHHHHHHHHHCC----CCC-CC-CEEEEEEEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHH
T ss_conf 999457588-89999999999869----996-33-447999998754368676442467874589999999999999876
Q ss_pred -------------CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCH-H---HH----HHHHHHHHHHHCCCCCCCCCCCCC-
Q ss_conf -------------5403444543123355677543411011100-0---01----234443333202444577676774-
Q gi|254780933|r 610 -------------YGADALRFYFSIMAVQGRDINLDLERIAGYR-N---FI----TKFWNAIRFSKMKNARHSVSFVPQ- 667 (947)
Q Consensus 610 -------------yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r-~---f~----nKLwNa~rf~~~~~~~~~~~~~~~- 667 (947)
-|.||+||++++..+ ..++.||++.+.... + ++ .++-...|=. ...........
T Consensus 404 ~~~~e~~~~ia~~Vg~~Airy~~L~~~~-~~~~~Fd~d~~l~~~g~t~~YiQYa~AR~~SIlrK~---~~~~~~~~~~~~ 479 (570)
T PRK01611 404 EESEEEKEEIAKAVGIDAVRYFDLSRSR-DSDYDFDLDLALSFEGNNPPYVQYAHARICSILRKA---AEEGLAAAADLS 479 (570)
T ss_pred HCCHHHHHHHHHHHCHHHHHHHHHCCCC-CCCCEECHHHHHHHCCCCCHHHHHHHHHHHHHHHHH---HCCCCCCCCCCC
T ss_conf 3377678899976341040264440688-888222689986323898257889999999999863---123454434333
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHH---HHHHHHHHHHH
Q ss_conf 333155567799999999888998753100102457776531001368898647653056714443---21000145676
Q gi|254780933|r 668 DVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVS---ETLSCFSYVLY 744 (947)
Q Consensus 668 ~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~~~~~~~---~~~~~l~~vl~ 744 (947)
.......+-++..+.....-+..+.++++.+..+.-++++. ..|..||= -+ +.+..++++.+. ........+|.
T Consensus 480 ~l~~~~E~~Li~~l~~fp~vv~~a~~~~~Ph~l~~YL~~La-~~Fn~fY~-~~-~vl~~~~~~~~~~RL~L~~a~~~vL~ 556 (570)
T PRK01611 480 LLTEEEELELIKKLAEFPEVVESAAEELEPHRIANYLYELA-GAFHSFYN-AC-PVLKEEEEEERNARLALVKATAQVLK 556 (570)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHH-CC-CCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 46998999999999887999999999688189999999999-99999985-19-83589998999999999999999999
Q ss_pred HHCCCCC
Q ss_conf 4034567
Q gi|254780933|r 745 NVCKLLH 751 (947)
Q Consensus 745 ~~l~ll~ 751 (947)
..+.||-
T Consensus 557 ~gL~LLG 563 (570)
T PRK01611 557 NGLDLLG 563 (570)
T ss_pred HHHHCCC
T ss_conf 9864039
No 51
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.66 E-value=6.2e-13 Score=112.97 Aligned_cols=167 Identities=14% Similarity=0.155 Sum_probs=101.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-CHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHCC-----------
Q ss_conf 01245543210135677766530121133786852-000014431000122554312456530233202-----------
Q gi|254780933|r 542 VLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPF-HIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQ----------- 609 (947)
Q Consensus 542 ~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pf-k~v~~hG~vld~~G~KMSKS~GNvidp~e~i~~----------- 609 (947)
+.+.|.||. ++|.++.....++-.. .+- -..+..|+|+ .+|+||||.+||+|...+++++
T Consensus 328 I~V~gadh~-~~~~rv~a~l~~lg~~------~~~~~~hv~~~~v~-~~g~kMStR~G~~v~l~dll~e~~~~a~~~~~~ 399 (562)
T PRK12451 328 LYVVGPEQS-LHFNQFFTVLKKLGYT------WVDGMEHVPFGFIL-KDGKKMSTRKGRVILLEEVLEEAIELAKQNIEE 399 (562)
T ss_pred EEEECCCHH-HHHHHHHHHHHHCCCC------CCCCEEEEEEEEEE-CCCCCEEECCCCEEEHHHHHHHHHHHHHHHHHH
T ss_conf 999567476-7999999999974997------54550689889987-488630205787568999999999999999875
Q ss_pred --------------CCHHHHHHHHHCCCCCCCCCCCCCCCCC---CCHH-HHHHHHHHHHHHHC-CCCCCCCCCCCCCCC
Q ss_conf --------------5403444543123355677543411011---1000-01234443333202-444577676774333
Q gi|254780933|r 610 --------------YGADALRFYFSIMAVQGRDINLDLERIA---GYRN-FITKFWNAIRFSKM-KNARHSVSFVPQDVK 670 (947)
Q Consensus 610 --------------yGaDalR~~l~~~~~~~~D~~fs~~~i~---~~r~-f~nKLwNa~rf~~~-~~~~~~~~~~~~~~~ 670 (947)
-|+||+||++++..+ ..++.||.+.+. +..+ ++ .+--+|-... ...............
T Consensus 400 r~~~~~~~~~ia~~VG~~Airy~~L~~~~-~~~~~FD~d~~~~~~~~~~PYi--QYAhARi~SIlrk~~~~~~~~~~~l~ 476 (562)
T PRK12451 400 KNPNLKQKEEVAKQVGVGAVIFHDLKNER-MHNIEFSLENMLKFEGETGPYV--QYTHARACSILRKESVEFETCTFALK 476 (562)
T ss_pred HCCCHHHHHHHHHHHCCCHHHHHHHHCCC-CCCCCCCHHHHHHCCCCCCHHH--HHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 27771328999998531130134443167-8777678999974257887369--99999999999744577554334469
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 155567799999999888998753100102457776531001368898647
Q gi|254780933|r 671 WIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIK 721 (947)
Q Consensus 671 ~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K 721 (947)
....+-++..+......+..+.++++.+..+.-++++. ..|..+| +-++
T Consensus 477 ~~~e~~Li~~L~~fp~vv~~aa~~~~Ph~l~~Yl~~LA-~~Fh~fY-~~~~ 525 (562)
T PRK12451 477 DDHSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVA-QSFNKYY-GNVR 525 (562)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHH-CCCC
T ss_conf 97999999999988999999998499379999999999-9999998-0687
No 52
>TIGR00435 cysS cysteinyl-tRNA synthetase; InterPro: IPR002308 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=99.52 E-value=1.6e-14 Score=124.57 Aligned_cols=163 Identities=18% Similarity=0.265 Sum_probs=116.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCC-CCCCHHHHHHHHHCCCCCCHHHHHC-CCCHHHHH
Q ss_conf 553012455432101356777665301211337868520000144-3100012255431245653023320-25403444
Q gi|254780933|r 539 PTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHA-LVRDKNGQKMSKSKGNVVDPIDVID-QYGADALR 616 (947)
Q Consensus 539 P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG-~vld~~G~KMSKS~GNvidp~e~i~-~yGaDalR 616 (947)
+-|++.+|.|++|-|-===+++|.+++ |..|+-+..+|+ ||. -+|+||||||||++...|+++ .|-+-+||
T Consensus 366 ~~DIH~GG~DL~FPHHENE~Aqs~a~~------gn~~~~~yW~H~G~~~-id~eKMSKSLgNF~~v~D~L~q~~d~~~lR 438 (660)
T TIGR00435 366 QIDIHGGGVDLIFPHHENEIAQSEALF------GNKQLAKYWLHNGFLM-IDNEKMSKSLGNFITVRDVLKQNYDPEVLR 438 (660)
T ss_pred CCEECCCCCCCCCCCCHHHHHHHHHHH------CCCCEEEEEEECCEEE-ECCCCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 430134887788878778999999872------8985689998517789-767216515556888886874276899999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 543123355677543411011100---00123444333320244457-76767743331555677999999998889987
Q gi|254780933|r 617 FYFSIMAVQGRDINLDLERIAGYR---NFITKFWNAIRFSKMKNARH-SVSFVPQDVKWIVNKWIIKRLATVINDVTVGM 692 (947)
Q Consensus 617 ~~l~~~~~~~~D~~fs~~~i~~~r---~f~nKLwNa~rf~~~~~~~~-~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~ 692 (947)
|++++.-.. ..++|+++.|+..+ +-+.+|.++.+.+....... ..+..... .....+-+...+.+.-.+|+.+|
T Consensus 439 ~~~l~~HYr-~pLdf~e~~l~~aksfe~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~F~Eseskvhsa~ 516 (660)
T TIGR00435 439 YLLLSVHYR-SPLDFSEELLEAAKSFENALERLYKALRNLDTDLAYSKEFGENKDP-KNVDEKEFEAAFEESESKVHSAM 516 (660)
T ss_pred HHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 998765531-4567478899999889999999999999875310342223424356-64225657866432035778887
Q ss_pred -HHHCCCHHHHHHHHHHHC
Q ss_conf -531001024577765310
Q gi|254780933|r 693 -ENHRFNDVSAVLYRFVWD 710 (947)
Q Consensus 693 -e~~~f~~a~~~i~~F~~~ 710 (947)
+++.+..|+..|++++-.
T Consensus 517 ~dDlN~a~Al~vL~el~~~ 535 (660)
T TIGR00435 517 DDDLNTANALAVLFELAKS 535 (660)
T ss_pred HHCCCHHHHHHHHHHHHHH
T ss_conf 5057806899999999998
No 53
>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.49 E-value=2.8e-13 Score=115.53 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=56.6
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 80899728449999865437889677999998767089835677881545408999999997674599877779899999
Q gi|254780933|r 37 GVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIE 116 (947)
Q Consensus 37 ~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~ 116 (947)
++..++..=|++-+.+||||+++++.-|++.||.+-.||.|.+....--=+=.|-.++ .+.+.+
T Consensus 19 ~~V~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~gy~V~~V~NITDIDDKII~~A-----~~~~~~----------- 82 (213)
T cd00672 19 GLVRMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRA-----REEGLS----------- 82 (213)
T ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH-----HHCCCC-----------
T ss_conf 9788997899688998765342576899999999963993589997267518999999-----983999-----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCE
Q ss_conf 99999999999999999980836
Q gi|254780933|r 117 KVWEWKKESGGSILSQLKRLGAS 139 (947)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~lG~~ 139 (947)
.+++++++.+.+.+++.+||+-
T Consensus 83 -~~ela~~y~~~f~~d~~~Lni~ 104 (213)
T cd00672 83 -IKEVAEYYTAEFFEDMKALNVL 104 (213)
T ss_pred -HHHHHHHHHHHHHHHHHHHCCC
T ss_conf -9999999999999999982899
No 54
>TIGR00456 argS arginyl-tRNA synthetase; InterPro: IPR001278 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Arginyl-tRNA synthetase (6.1.1.19 from EC) has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available . ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=99.48 E-value=6.3e-12 Score=105.62 Aligned_cols=198 Identities=17% Similarity=0.172 Sum_probs=118.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCHHHHH--------------
Q ss_conf 012455432101356777665301211337868520000144310001225543124565302332--------------
Q gi|254780933|r 542 VLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVI-------------- 607 (947)
Q Consensus 542 ~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvidp~e~i-------------- 607 (947)
+.+.|.||. +++++|.+.--.| ..-...|==.++.+|||...+|+|||-.+|++|+..+++
T Consensus 353 i~V~gsdh~-~h~~q~~~~~e~L----G~~~~~~~L~~~~f~~v~~~~GKkmkTR~G~~i~ld~ll~e~~~RA~~~~~~~ 427 (600)
T TIGR00456 353 IYVWGSDHK-LHIAQVFAILEKL----GYLSKKKELEHLEFGMVPLGSGKKMKTRRGNVISLDNLLDEASKRAGNVITKR 427 (600)
T ss_pred EEEEECCHH-HHHHHHHHHHHHC----CCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHH
T ss_conf 987405188-8999999999971----65378861689987643257888543455660223446899999999999611
Q ss_pred --------------CCCCHHHHHHHHHCCCCCCCCCCCCCC-CCCC-CHH------HH-HHHHHHHH-HHHCCCCCCCCC
Q ss_conf --------------025403444543123355677543411-0111-000------01-23444333-320244457767
Q gi|254780933|r 608 --------------DQYGADALRFYFSIMAVQGRDINLDLE-RIAG-YRN------FI-TKFWNAIR-FSKMKNARHSVS 663 (947)
Q Consensus 608 --------------~~yGaDalR~~l~~~~~~~~D~~fs~~-~i~~-~r~------f~-nKLwNa~r-f~~~~~~~~~~~ 663 (947)
+.-|.||+||++++.++ ..|+.|+++ ..-+ .+| ++ .++--..| -..... ....
T Consensus 428 ~~~~~~~e~~e~~a~~vG~gAvry~~l~~~~-~~~~~Fd~d~~~L~f~~n~~pY~QYAhaR~~Silr~~~~~~~--~~~~ 504 (600)
T TIGR00456 428 NTDLEQDEAEEKVADAVGIGAVRYADLSKNR-ETHYVFDWDTAMLSFEGNTAPYIQYAHARICSILRKKAEIDG--EKLI 504 (600)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEECCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCH--HHHH
T ss_conf 0135222037899999736799999997278-988155012011115788743258889999998763102331--3455
Q ss_pred CCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHH---HHHHHH
Q ss_conf 6774333-155567799999999888998753100102457776531001368898647653056714443---210001
Q gi|254780933|r 664 FVPQDVK-WIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVS---ETLSCF 739 (947)
Q Consensus 664 ~~~~~~~-~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~~~~~~~---~~~~~l 739 (947)
..+.... ..-.+-++..|.+.-.-+.++.++.+.+..++-+|++. ..|++||= .+ +.+...+++.+. .....+
T Consensus 505 ~~~~~~~~~~~E~~L~~~L~~fp~~~~~~~~~~~p~~l~~Yly~LA-~~F~sfY~-~~-~v~~~~~~~~~~~RL~L~~~~ 581 (600)
T TIGR00456 505 ADDFLLLKEEKEKELLKLLLQFPEVIEEAAEEREPHVLTNYLYELA-KLFSSFYK-AC-PVLDAENEELAKARLALLKAT 581 (600)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHH-CC-CCCCCCCHHHHHHHHHHHHHH
T ss_conf 3200036888899999998564899999998547188899999997-76423664-17-788986266899999999999
Q ss_pred HHHHHHHCCCC
Q ss_conf 45676403456
Q gi|254780933|r 740 SYVLYNVCKLL 750 (947)
Q Consensus 740 ~~vl~~~l~ll 750 (947)
..+|.+.|.||
T Consensus 582 ~~~L~n~L~LL 592 (600)
T TIGR00456 582 RQTLKNGLELL 592 (600)
T ss_pred HHHHHHHHHHH
T ss_conf 99999988760
No 55
>pfam10458 Val_tRNA-synt_C Valyl tRNA synthetase tRNA binding arm. This domain is found at the C-terminus of Valyl tRNA synthetases.
Probab=99.40 E-value=2.3e-12 Score=108.85 Aligned_cols=65 Identities=37% Similarity=0.612 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998899999999999999866079236785888999999999999999999999999998
Q gi|254780933|r 880 DFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERI 944 (947)
Q Consensus 880 D~~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l 944 (947)
|+++|+.||+|+++++++++.++++||+|++||+|||++||+++|+++.+++.++.+|+.+|++|
T Consensus 1 D~~~E~~RL~Kel~kl~~~i~~~~~kL~N~~Fv~kAP~~VV~~er~kl~~~~~~~~~l~~~L~~L 65 (66)
T pfam10458 1 DVEKERARLEKELAKLQKEIERLQKKLSNPGFVAKAPAEVVEEEKAKLAEYEEQLEKLKERLSQL 65 (66)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 97989998999999999999999987787677770989999999999999999999999999875
No 56
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.35 E-value=2.4e-12 Score=108.72 Aligned_cols=95 Identities=16% Similarity=0.262 Sum_probs=80.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHH-HHCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 3315556779999999988899875310010245777653100136889864765-3056-7144432100014567640
Q gi|254780933|r 669 VKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSI-LNQK-DSELVSETLSCFSYVLYNV 746 (947)
Q Consensus 669 ~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~-l~~~-~~~~~~~~~~~l~~vl~~~ 746 (947)
.....|.++++++.++++++.++|++++|++|++.+++++ ..||.|++..+|+ +.++ +.+....+..++..+++.+
T Consensus 33 ~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~N~y~~~~~PW~l~K~~~~~~~~~vl~~~l~~~~~l 110 (129)
T cd07957 33 GLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELA--RAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRIL 110 (129)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 7764139999999999999999998524999999999999--99999999658798882302999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHC
Q ss_conf 3456774489999999743
Q gi|254780933|r 747 CKLLHPIIPFVTEDLYSHV 765 (947)
Q Consensus 747 l~ll~P~~PfitEeiw~~l 765 (947)
.+||+||||++|++||..|
T Consensus 111 ~ilL~P~mP~~s~~i~~~L 129 (129)
T cd07957 111 AILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHHHHHHCCHHHHHHHHHC
T ss_conf 9999757018999999719
No 57
>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.29 E-value=4.1e-11 Score=99.65 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=66.4
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--------HHHHHHHHHHHHHHCCCCH
Q ss_conf 99808997284499998654378896779999987670898356778815454--------0899999999767459987
Q gi|254780933|r 35 GSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAG--------IATQITVESRLFAQSSLTR 106 (947)
Q Consensus 35 ~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~G--------lPiE~~vek~l~~~~~~~~ 106 (947)
+++.+++-.|. .+||.+|||+++-....|++.|-.+-+|+.|.+.+.||..- ||-+ .++.+|..=..-+
T Consensus 17 ~k~~~v~~tG~-~PSG~~HIGn~rEv~~~~~V~ral~~~g~~~~~i~~~DD~D~lRKVp~~lpe~--~~~ylg~PL~~IP 93 (354)
T cd00674 17 GKEKYVVASGI-SPSGLIHIGNFREVVTADAVRRALRDLGFEVRLIYSWDDYDPLRKVPDNVPES--LEQYIGMPLSSVP 93 (354)
T ss_pred CCCCEEEECCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHCCCCCCCCHH--HHHHCCCCCEECC
T ss_conf 89858994787-99988632055017889999999997599679999840555100375578799--9986299630068
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
Q ss_conf 77798999999999999999999999998083664
Q gi|254780933|r 107 EDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCD 141 (947)
Q Consensus 107 ~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~D 141 (947)
...| .|..|++.+...+.+.+.++|+-+.
T Consensus 94 dP~G------~~~SyaeHf~~~f~~~L~~~gi~~e 122 (354)
T cd00674 94 DPFG------CHESYAEHFNAPFEESLDRFGIEVE 122 (354)
T ss_pred CCCC------CCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 9777------7545999999999999998498289
No 58
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.27 E-value=1.8e-10 Score=94.90 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=70.9
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCC--------CHHHHHHHHHHHHHHCCCC
Q ss_conf 998089972844999986543788967799999876708-9835677881545--------4089999999976745998
Q gi|254780933|r 35 GSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMR-GKNVLWQPGTDHA--------GIATQITVESRLFAQSSLT 105 (947)
Q Consensus 35 ~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~-G~~Vl~~~G~D~~--------GlPiE~~vek~l~~~~~~~ 105 (947)
+++.+++-.|+ .+||.+|||+.+-....|+++|=.|-+ |+.|.+.+.||.. ++|-.-..++.+|..=..-
T Consensus 27 ~~~~vv~~tG~-~pSG~~HiG~~~Ev~~~~~V~~al~~~~g~~~~~i~~~Dd~D~lRkvp~~~p~~e~~~~~lg~Pl~~i 105 (513)
T PRK00750 27 KKGEVLFETGY-GPSGLPHIGTFGEVARTTMVRRALRDLTGIKTRLIYFSDDMDGLRKVPDNVPNQEMLAEHLGKPLTSV 105 (513)
T ss_pred CCCEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
T ss_conf 88739993686-89988623045226669999999998459966899985177654346889998499998749966407
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEC
Q ss_conf 7777989999999999999999999999980836642
Q gi|254780933|r 106 REDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDW 142 (947)
Q Consensus 106 ~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw 142 (947)
+...| .|..|++.|...+.+.+.++|+-+++
T Consensus 106 PdP~g------~~~Sya~h~~~~~~~~l~~~gi~~e~ 136 (513)
T PRK00750 106 PDPFG------THESYAEHNNARLREFLDKFGFEYEF 136 (513)
T ss_pred CCCCC------CCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99888------75769999999999999983983399
No 59
>pfam01921 tRNA-synt_1f tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes.
Probab=99.23 E-value=1.1e-10 Score=96.59 Aligned_cols=101 Identities=17% Similarity=0.161 Sum_probs=72.3
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--------HHHHHHHHHHHHHHCCCCH
Q ss_conf 99808997284499998654378896779999987670898356778815454--------0899999999767459987
Q gi|254780933|r 35 GSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAG--------IATQITVESRLFAQSSLTR 106 (947)
Q Consensus 35 ~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~G--------lPiE~~vek~l~~~~~~~~ 106 (947)
++.++++-.|+ .+||.+|||+++-....|++.|-.|-+|+.|.+...||..- +|-+-..++.||..=..-+
T Consensus 17 ~~~~~v~~tG~-~PSG~~HIGnfrEv~~~~~V~~al~~~g~~~~~i~~~DD~D~lRKVP~nlp~~e~~~~ylg~Pl~~IP 95 (355)
T pfam01921 17 KKGEILVETGI-GPSGLPHIGNFREVLRTDAVRRALRKRGFETRLIYFSDDMDGLRKVPDNVPNSEMLEKYLGKPLTRIP 95 (355)
T ss_pred CCCCEEEECCC-CCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEECC
T ss_conf 79858995266-89988642156017999999999997498769999821565101378899998999873697521347
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEC
Q ss_conf 777989999999999999999999999980836642
Q gi|254780933|r 107 EDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDW 142 (947)
Q Consensus 107 ~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw 142 (947)
...| .+..|++.+.....+.+.++|+-+.+
T Consensus 96 dP~g------~~~Sya~h~~~~~~~~L~~~gi~~ef 125 (355)
T pfam01921 96 DPFG------CHESYAEHFNAPFLEFLDRFGIEYEF 125 (355)
T ss_pred CCCC------CCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9888------74559999999999999983982899
No 60
>pfam00750 tRNA-synt_1d tRNA synthetases class I (R). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase.
Probab=98.87 E-value=3.2e-08 Score=78.55 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=51.7
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9980899728449999865437889677999998767089835677881545408999
Q gi|254780933|r 35 GSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQI 92 (947)
Q Consensus 35 ~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~ 92 (947)
..++.++-+.=||++|+||+||+||-++.|.++|-.+-.||+|....-..-.|..+-.
T Consensus 17 k~kkI~vE~~S~Np~kplHvGHlR~aiiGdslarll~~~G~~V~r~~yvnD~G~Qi~~ 74 (345)
T pfam00750 17 ENKKVVVEFSSPNPAKPIHVGHLRSTIIGDALSRLLEFLGYDVVRENYVGDWGTQFGM 74 (345)
T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHH
T ss_conf 9988999853899998850410152799999999999879959899876864899999
No 61
>cd00671 ArgRS_core This is the catalytic core domain of Arginyl tRNA synthetase (ArgRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The other subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=98.47 E-value=2.9e-06 Score=64.18 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=47.9
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 8997284499998654378896779999987670898356778815454089999
Q gi|254780933|r 39 FCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQIT 93 (947)
Q Consensus 39 f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~ 93 (947)
.++-+.=||++|+||+||+||-++.|.++|-.+-.|++|....-..-.|..+-.-
T Consensus 2 I~vEf~S~Np~kplHvGHlR~aiiGdslaril~~~G~~V~r~~yvnD~G~Qi~~l 56 (267)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFAGYDVTREYYINDWGRQIGLL 56 (267)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHH
T ss_conf 5988558999998503103638999999999998799588988507860999999
No 62
>PRK00574 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.23 E-value=2.6e-05 Score=57.22 Aligned_cols=88 Identities=25% Similarity=0.331 Sum_probs=58.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 49999865437889677999998767089835677881545408999999997674599877779899999999999999
Q gi|254780933|r 46 PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKES 125 (947)
Q Consensus 46 P~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~ 125 (947)
|.+||.||+|+++|-..-=.+||= ..|.-+|+.=-+|..= .+.++
T Consensus 11 PSPTG~lHiG~~rtAl~n~l~Ar~--~~G~fiLRIEDTD~~R---------------------------------~~~~~ 55 (489)
T PRK00574 11 PSPTGYLHIGNARTALFNYLFAKH--NNGKFILRIEDTDQER---------------------------------NVEGG 55 (489)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCCCCC---------------------------------CCHHH
T ss_conf 899984224789999999999996--4998999867789877---------------------------------87699
Q ss_pred HHHHHHHHHHHCCEEECCC---------CEECCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 9999999998083664279---------8115886799999999999998894331
Q gi|254780933|r 126 GGSILSQLKRLGASCDWSR---------ERFTMDEGMSNAVRNAFVVLYKDGLIYR 172 (947)
Q Consensus 126 ~~~~~~~~~~lG~~~Dw~r---------~y~T~d~~y~~~v~~~F~~L~~~gliy~ 172 (947)
.+.|.+.++.+|+. |+- +|+-.. ....=+....+|.++|++|+
T Consensus 56 ~~~I~~~L~wlgl~--~DE~p~~~g~~gPY~QS~--R~~~Y~~~a~~Ll~~G~AY~ 107 (489)
T PRK00574 56 EESQLENLKWLGID--WDEGPDKGGEYGPYRQSE--RLDIYQKYADQLLEEGKAYY 107 (489)
T ss_pred HHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHCCCCEE
T ss_conf 99999999987988--877877788888835126--89999999999997499745
No 63
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=98.20 E-value=3.2e-05 Score=56.56 Aligned_cols=88 Identities=28% Similarity=0.358 Sum_probs=58.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 49999865437889677999998767089835677881545408999999997674599877779899999999999999
Q gi|254780933|r 46 PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKES 125 (947)
Q Consensus 46 P~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~ 125 (947)
|.+||.||+||++|-.+.-.+|| +..|.-+|+.=-.|.. + .+..+
T Consensus 9 PSPTG~lHiG~~rtAl~n~l~Ar--~~~G~fiLRIEDtD~~--------------------------R-------~~~~~ 53 (461)
T PRK12558 9 PSPTGYIHIGNARTALFNWLFAR--AHGGKFILRYDDTDVE--------------------------R-------SKQEY 53 (461)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEECCCCCC--------------------------C-------CCHHH
T ss_conf 89898532789999999999999--6199899987768987--------------------------6-------88799
Q ss_pred HHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 99999999980836642798115886799999999999998894331
Q gi|254780933|r 126 GGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYR 172 (947)
Q Consensus 126 ~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~ 172 (947)
.+.|.+.++.+|+ +|+.+|+-.. ....-+....+|.++|++|+
T Consensus 54 ~~~i~~~L~WlGl--~wDe~~~QS~--r~~~Y~~~~~~L~~~g~aY~ 96 (461)
T PRK12558 54 ADAIADDLRWLGL--DPDRVEYQSK--RFDRYAEAAEKLKAAGLLYA 96 (461)
T ss_pred HHHHHHHHHHCCC--CCCCCCHHHC--CHHHHHHHHHHHHHCCCCEE
T ss_conf 9999999998799--9998741643--99999999999998699365
No 64
>pfam00749 tRNA-synt_1c tRNA synthetases class I (E and Q), catalytic domain. Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organisms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln).
Probab=98.20 E-value=3.3e-05 Score=56.53 Aligned_cols=89 Identities=31% Similarity=0.427 Sum_probs=60.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHH
Q ss_conf 44999986543788967799999876708983567788154540899999999767459987777989999999999999
Q gi|254780933|r 45 PPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKE 124 (947)
Q Consensus 45 pP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~ 124 (947)
+|.+||.||+||+++..+.-.+|| ...|.-+|+.=-.|..- -..+
T Consensus 7 APSPTG~lHiG~~rtAl~n~l~Ar--~~~G~fiLRIEDtD~~R---------------------------------~~~e 51 (314)
T pfam00749 7 APSPTGYLHIGHARTALFNYLFAK--NYNGKFILRFDDTDPER---------------------------------EKPE 51 (314)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH--HHCCEEEEEECCCCCCC---------------------------------CCHH
T ss_conf 889898644899999999999999--80998999968789886---------------------------------8768
Q ss_pred HHHHHHHHHHHHCCEEECCCC-EECCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 999999999980836642798-115886799999999999998894331
Q gi|254780933|r 125 SGGSILSQLKRLGASCDWSRE-RFTMDEGMSNAVRNAFVVLYKDGLIYR 172 (947)
Q Consensus 125 ~~~~~~~~~~~lG~~~Dw~r~-y~T~d~~y~~~v~~~F~~L~~~gliy~ 172 (947)
+.+.|.++++.||+ +|+.. |+-.+ ....-.....+|.++|++|.
T Consensus 52 ~~~~I~~dL~wLGl--~wDe~~~~QS~--r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T pfam00749 52 YEESILEDLKWLGI--KWDEKPYYQSD--RFDIYYKYAEELIEKGLAYV 96 (314)
T ss_pred HHHHHHHHHHHHCC--CCCCCCEEHHC--CHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999537--89988355202--09999999999997499522
No 65
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.18 E-value=4.2e-05 Score=55.72 Aligned_cols=88 Identities=28% Similarity=0.363 Sum_probs=57.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 49999865437889677999998767089835677881545408999999997674599877779899999999999999
Q gi|254780933|r 46 PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKES 125 (947)
Q Consensus 46 P~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~ 125 (947)
|.+||.||+|+++|-.+.=.+|| .-.|.-+++.=-.|..- .+..+
T Consensus 9 PSPtG~lH~G~~rtal~n~l~a~--~~~g~f~lRieDtD~~R---------------------------------~~~~~ 53 (467)
T PRK01406 9 PSPTGYLHVGGARTALFNWLFAR--HHGGKFILRIEDTDLER---------------------------------STPEA 53 (467)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH--HHCCEEEEEECCCCCCC---------------------------------CCHHH
T ss_conf 99998422478999999999999--72996999968799887---------------------------------87799
Q ss_pred HHHHHHHHHHHCCEEECCC-CEECCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 9999999998083664279-8115886799999999999998894331
Q gi|254780933|r 126 GGSILSQLKRLGASCDWSR-ERFTMDEGMSNAVRNAFVVLYKDGLIYR 172 (947)
Q Consensus 126 ~~~~~~~~~~lG~~~Dw~r-~y~T~d~~y~~~v~~~F~~L~~~gliy~ 172 (947)
.+.|.+.++.+|+ +|+. +|.-... ...-+....+|.++|++|+
T Consensus 54 ~~~i~~~l~wlgi--~~de~p~~QS~r--~~~y~~~~~~L~~~g~aY~ 97 (467)
T PRK01406 54 VDAILDGLKWLGL--DWDEGPYRQSER--FDRYKEVAEQLLEKGKAYY 97 (467)
T ss_pred HHHHHHHHHHCCC--CCCCCCEEHHCC--HHHHHHHHHHHHHCCCCEE
T ss_conf 9999999998799--999888617448--9999999999998499864
No 66
>pfam00750 tRNA-synt_1d tRNA synthetases class I (R). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase.
Probab=98.04 E-value=2.8e-06 Score=64.29 Aligned_cols=82 Identities=28% Similarity=0.340 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-CH--HCCCCCCCCHHHHHHHHHCCCCCCHHHHHCC---------
Q ss_conf 01245543210135677766530121133786852-00--0014431000122554312456530233202---------
Q gi|254780933|r 542 VLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPF-HI--VYMHALVRDKNGQKMSKSKGNVVDPIDVIDQ--------- 609 (947)
Q Consensus 542 ~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pf-k~--v~~hG~vld~~G~KMSKS~GNvidp~e~i~~--------- 609 (947)
+++.|.||. ++|.++.....++ |..|. .. .+.+|+|+.++|+|||+.+||+|...+++++
T Consensus 234 I~V~g~dq~-~h~~~l~~~l~~l-------g~~~~~~~~~h~~~g~v~~~dgkkMStR~G~~v~l~dLl~ea~~~a~~~~ 305 (345)
T pfam00750 234 IYVLGADQH-GHIQRLFAAAAAL-------GYDPESVEVLHIGFGVVLGKDGKRMSTRAGNVVTLDDLLDEALERAMDIK 305 (345)
T ss_pred EEECCCCHH-HHHHHHHHHHHHC-------CCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHH
T ss_conf 886474275-6999999999985-------99942361789999738768996167788775789999999999999999
Q ss_pred -----------------CCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf -----------------54034445431233556775434
Q gi|254780933|r 610 -----------------YGADALRFYFSIMAVQGRDINLD 632 (947)
Q Consensus 610 -----------------yGaDalR~~l~~~~~~~~D~~fs 632 (947)
-|.+|+||++++..+ ..++.||
T Consensus 306 ~~~~~~~~~~~~~ia~~Vgi~Airy~~L~~~~-~k~i~FD 344 (345)
T pfam00750 306 EKNRDLTADELEAVATAIGVDAARYADLSSNR-DTDYIFD 344 (345)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCC
T ss_conf 73668987789999987707676599986588-9898358
No 67
>PRK12410 glutamyl-tRNA synthetase; Provisional
Probab=98.02 E-value=0.00018 Score=51.15 Aligned_cols=88 Identities=17% Similarity=0.261 Sum_probs=59.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 49999865437889677999998767089835677881545408999999997674599877779899999999999999
Q gi|254780933|r 46 PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKES 125 (947)
Q Consensus 46 P~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~ 125 (947)
|.+||.||+||++|-...=.+||- ..|.-+|+.=-.|..= -+.++
T Consensus 6 PSPTG~lHiG~~rtAl~n~l~Ar~--~~G~fiLRIEDtD~~R---------------------------------~~~~~ 50 (433)
T PRK12410 6 PSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFIIRIEDTDKER---------------------------------NIEGK 50 (433)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCCCCC---------------------------------CCHHH
T ss_conf 797996427899999999999985--5998999878789998---------------------------------98699
Q ss_pred HHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 99999999980836642798115886799999999999998894331
Q gi|254780933|r 126 GGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYR 172 (947)
Q Consensus 126 ~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~ 172 (947)
.+.|.+.++.+|+ +|+.+|+-.+.- ..=.....+|.++|.+|.
T Consensus 51 ~~~i~~~L~wlGl--~wDe~~~QS~R~--~~Y~~~~~~L~~~g~aY~ 93 (433)
T PRK12410 51 DKEILEILNLFGI--SWDKLVYQSENL--KFHRQMAEKLLSEKKAFA 93 (433)
T ss_pred HHHHHHHHHHCCC--CCCCCEECCCCH--HHHHHHHHHHHHCCCEEE
T ss_conf 9999999998599--999883125789--999999999998099689
No 68
>TIGR00396 leuS_bact leucyl-tRNA synthetase; InterPro: IPR002302 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes the eubacterial and mitochondrial synthetases. The crystal structure of leucyl-tRNA synthetase from the hyperthermophile Thermus thermophilus has an overall architecture that is similar to that of isoleucyl-tRNA synthetase, except that the putative editing domain is inserted at a different position in the primary structure. This feature is unique to prokaryote-like leucyl-tRNA synthetases, as is the presence of a novel additional flexibly inserted domain . ; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=98.01 E-value=1.5e-06 Score=66.22 Aligned_cols=53 Identities=23% Similarity=0.409 Sum_probs=47.1
Q ss_pred CCC--CCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCC--EECCCCCHHHHHHHH
Q ss_conf 222--35666553244431222121454202333432002441--121443113567641
Q gi|254780933|r 381 IVP--HCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLS--FIPQSWDKSYYEWLE 436 (947)
Q Consensus 381 ~~p--~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~--~~P~~~~~~~~~wl~ 436 (947)
|=+ .||||+.+|+-+..+||||+.+++++++|+.++ ++. | |++.+.+=+|||.
T Consensus 174 S~Gna~SwR~~~~Vekk~l~QW~LKIT~YAe~LL~dLe--~L~D~W-P~~VK~MQrNWIG 230 (916)
T TIGR00396 174 SDGNARSWRGGTPVEKKELKQWFLKITAYAEELLNDLE--ELDDHW-PESVKEMQRNWIG 230 (916)
T ss_pred CCCCCEEECCCCCEEEEECCCCEEHHHHHHHHHHHHHH--CCCCCC-CHHHHHCCCCCCC
T ss_conf 78985322487844663067510113378898541142--046788-7313640454565
No 69
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.90 E-value=5.2e-05 Score=55.03 Aligned_cols=98 Identities=29% Similarity=0.292 Sum_probs=63.5
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHH
Q ss_conf 98089972844999986543788967799999876708983567788154540899999999767459987777989999
Q gi|254780933|r 36 SGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFI 115 (947)
Q Consensus 36 ~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~ 115 (947)
+.+.+.=+ ||.+||.||||||++-.+-..+||- -.|.-+|+.=-+|- ..+ +
T Consensus 98 ~gkV~tRF-aP~P~G~LHiGhar~al~N~~~Ak~--~~G~~iLR~eDTdp---~~~--------------r--------- 148 (566)
T PRK04156 98 KGKVVMRF-APNPSGPLHLGHARAAILNDEYAKR--YGGKFILRFEDTDP---RTK--------------R--------- 148 (566)
T ss_pred CCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCCC---CCC--------------C---------
T ss_conf 88389952-8699987618999999996999998--09989999658883---325--------------5---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCC--HHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf 99999999999999999998083664279811588--67999999999999988943313
Q gi|254780933|r 116 EKVWEWKKESGGSILSQLKRLGASCDWSRERFTMD--EGMSNAVRNAFVVLYKDGLIYRD 173 (947)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d--~~y~~~v~~~F~~L~~~gliy~~ 173 (947)
-..++.+.|.++++.||+ +|+..|.+.| +.|++.. .+|.++|+.|..
T Consensus 149 -----~~~e~~~~I~~dl~WLG~--~~de~~~qSdr~~~y~~~a----~~Li~~G~AY~c 197 (566)
T PRK04156 149 -----PDPEAYDMIREDLKWLGV--KPDEVVIQSDRLEIYYEYA----RKLIEMGGAYVC 197 (566)
T ss_pred -----CCHHHHHHHHHHHHHHCC--CCCCCEEHHHHHHHHHHHH----HHHHHCCCEEEC
T ss_conf -----637899999999998299--9780166576199999999----999987992777
No 70
>cd00807 Gln_GluRS_non_core Glutaminyl-tRNA synthetase (GlnRS) and non-descriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Gln or Glu, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.82 E-value=0.00011 Score=52.72 Aligned_cols=86 Identities=28% Similarity=0.278 Sum_probs=61.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHH
Q ss_conf 44999986543788967799999876708983567788154540899999999767459987777989999999999999
Q gi|254780933|r 45 PPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKE 124 (947)
Q Consensus 45 pP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~ 124 (947)
+|.+||.||+||+++-.+.-.+||- ..|.-+|+.=-.|.- . -..+
T Consensus 7 APsPtG~lHiG~artal~n~l~Ar~--~~G~~iLRiEDTD~~-----------------r----------------~~~e 51 (238)
T cd00807 7 PPEPNGYLHIGHAKAAILNFEYAKR--YGGKLILRFDDTNPK-----------------K----------------EDEE 51 (238)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCCCC-----------------C----------------CCCH
T ss_conf 8898986438999999999999998--299699986778987-----------------6----------------7616
Q ss_pred HHHHHHHHHHHHCCEEECCCCEECCCH--HHHHHHHHHHHHHHHCCCEE
Q ss_conf 999999999980836642798115886--79999999999999889433
Q gi|254780933|r 125 SGGSILSQLKRLGASCDWSRERFTMDE--GMSNAVRNAFVVLYKDGLIY 171 (947)
Q Consensus 125 ~~~~~~~~~~~lG~~~Dw~r~y~T~d~--~y~~~v~~~F~~L~~~gliy 171 (947)
+.+.|.+.++.||+ +|+..|++.+. .|++ ...+|.++|++|
T Consensus 52 ~~~~I~~~L~wLGl--~~De~~~QS~r~~~y~~----~a~~Li~~G~AY 94 (238)
T cd00807 52 AYDSILEDLEWLGI--KPDEITYASDYFDLYYE----YAEKLIKMGKAY 94 (238)
T ss_pred HHHHHHHHHHHHCC--CCCCCEECCCCHHHHHH----HHHHHHHCCCCC
T ss_conf 89999999998489--99931563667999999----999999879987
No 71
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.74 E-value=0.00047 Score=48.06 Aligned_cols=88 Identities=24% Similarity=0.361 Sum_probs=57.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 49999865437889677999998767089835677881545408999999997674599877779899999999999999
Q gi|254780933|r 46 PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKES 125 (947)
Q Consensus 46 P~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~ 125 (947)
|++||.||+||+++-...-.+||- ..|.-+++.=-.|..= -..++
T Consensus 11 PSPTG~LHlG~~rtAl~n~l~Ar~--~~G~~iLRIEDtD~~R---------------------------------~~~~~ 55 (299)
T PRK05710 11 PSPSGPLHFGSLVSALLSYLDARA--QGGRWLVRIEDIDPPR---------------------------------EVPGA 55 (299)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCCCCC---------------------------------CCHHH
T ss_conf 699985328999999999999998--2998999867789765---------------------------------87689
Q ss_pred HHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 9999999998083664279811588679999999999999889433
Q gi|254780933|r 126 GGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIY 171 (947)
Q Consensus 126 ~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy 171 (947)
.+.|.++++.||+ +|+.+... .-.....=+....+|.++|++|
T Consensus 56 ~~~Il~~L~wlGl--~wD~~~~~-QS~R~~~Y~~~~~~L~~~g~aY 98 (299)
T PRK05710 56 AAAILADLEWLGL--HWDGPVRR-QSERHDAYRAALDRLAAAGLVY 98 (299)
T ss_pred HHHHHHHHHHHCC--CCCCCCHH-HHHHHHHHHHHHHHHHHCCCCE
T ss_conf 9999999999568--88874048-8858999999999999769902
No 72
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.63 E-value=0.00027 Score=49.83 Aligned_cols=95 Identities=27% Similarity=0.360 Sum_probs=59.9
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHH
Q ss_conf 08997284499998654378896779999987670898356778815454089999999976745998777798999999
Q gi|254780933|r 38 VFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEK 117 (947)
Q Consensus 38 ~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~ 117 (947)
+.+.=+ ||.+||-||||||....+-+-+|+.+ .|+-.|+ ||-+- |. + +
T Consensus 29 kVvtRF-pPePnG~LHiGHaka~~lN~~~a~~y--~G~~~LR---fDDTN-P~------------~---e---------- 76 (556)
T PRK05347 29 KVHTRF-PPEPNGYLHIGHAKSICLNFGLAQDY--GGKCNLR---FDDTN-PE------------K---E---------- 76 (556)
T ss_pred EEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEE---ECCCC-CC------------C---C----------
T ss_conf 399804-98999876188889998669999970--9989998---35899-87------------4---5----------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCEEECCC-CEECCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 999999999999999998083664279-8115886799999999999998894331
Q gi|254780933|r 118 VWEWKKESGGSILSQLKRLGASCDWSR-ERFTMDEGMSNAVRNAFVVLYKDGLIYR 172 (947)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~lG~~~Dw~r-~y~T~d~~y~~~v~~~F~~L~~~gliy~ 172 (947)
..++.+.|+++++.||+. |.. .+.|.| |.......-.+|-++|+.|-
T Consensus 77 ----~~e~~~~I~~d~~wLg~~--~~~~i~~~Sd--~f~~~y~~a~~LI~~g~AYv 124 (556)
T PRK05347 77 ----DQEYVDSIKEDVRWLGFD--WGGELRYASD--YFDQLYEYAVELIKKGKAYV 124 (556)
T ss_pred ----CHHHHHHHHHHHHHCCCC--CCCEEEEEHH--HHHHHHHHHHHHHHCCCCEE
T ss_conf ----489999999999874998--8982788134--29999999999986488135
No 73
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00036 Score=48.88 Aligned_cols=89 Identities=29% Similarity=0.408 Sum_probs=58.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHH
Q ss_conf 44999986543788967799999876708983567788154540899999999767459987777989999999999999
Q gi|254780933|r 45 PPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKE 124 (947)
Q Consensus 45 pP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~ 124 (947)
+|.+||.|||||+++-.+--.+||- ..|.-+++.=-.|- .+ -..+
T Consensus 15 APsPtG~LHiG~artAl~n~~~Ar~--~~G~fiLRiEDTD~-------------------~R--------------~~~e 59 (472)
T COG0008 15 APSPTGYLHIGHARTALLNYLYARK--YGGKFILRIEDTDP-------------------ER--------------ETPE 59 (472)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCCC-------------------CC--------------CCHH
T ss_conf 9599985426889999997999998--39979999647998-------------------87--------------8878
Q ss_pred HHHHHHHHHHHHCCEEECCCC-EECCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 999999999980836642798-115886799999999999998894331
Q gi|254780933|r 125 SGGSILSQLKRLGASCDWSRE-RFTMDEGMSNAVRNAFVVLYKDGLIYR 172 (947)
Q Consensus 125 ~~~~~~~~~~~lG~~~Dw~r~-y~T~d~~y~~~v~~~F~~L~~~gliy~ 172 (947)
+.+.|.++++.|| ++|+.+ |...+ +...-...-.+|.++|+.|.
T Consensus 60 ~~~~I~~~L~WLG--l~wde~~~~QS~--r~~~Y~~~~~~Li~~G~AY~ 104 (472)
T COG0008 60 AEDAILEDLEWLG--LDWDEGPYYQSE--RFDIYYEYAEKLIEKGKAYV 104 (472)
T ss_pred HHHHHHHHHHHCC--CCCCCCEEEHHH--HHHHHHHHHHHHHHCCCEEE
T ss_conf 9999999998668--888976143642--39999999999998799688
No 74
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=3.4e-05 Score=56.39 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=73.9
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--------HHHHHHHHHHHHHHCCCCHHH
Q ss_conf 808997284499998654378896779999987670898356778815454--------089999999976745998777
Q gi|254780933|r 37 GVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAG--------IATQITVESRLFAQSSLTRED 108 (947)
Q Consensus 37 ~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~G--------lPiE~~vek~l~~~~~~~~~~ 108 (947)
..++|-.|. .+||.+|||.++-....|++.|=.|-+|+.|.+..=||..- ||-.-..++-+|..=..-+..
T Consensus 19 ~~~~v~tGi-sPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVATGI-SPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CCEEEECCC-CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 868983476-8988732142898989999999999748865799981487510127999998689998709964348997
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEC
Q ss_conf 7989999999999999999999999980836642
Q gi|254780933|r 109 IGRDAFIEKVWEWKKESGGSILSQLKRLGASCDW 142 (947)
Q Consensus 109 ~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw 142 (947)
.| -|..|++.|...+.+.+.++|+-+.|
T Consensus 98 ~G------~~~Sya~hf~~~f~~~l~~~Gi~~E~ 125 (521)
T COG1384 98 FG------CCDSYAEHFLRPFEEFLDEFGIEVEF 125 (521)
T ss_pred CC------CCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 66------53359999999999999864986499
No 75
>cd00418 GlxRS_core Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The descriminating form of GluRS differs from GlnRS and the non-descriminating form of GluRS in their C-terminal anti-codon binding domains.
Probab=97.34 E-value=0.0013 Score=44.73 Aligned_cols=83 Identities=30% Similarity=0.430 Sum_probs=55.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHH
Q ss_conf 44999986543788967799999876708983567788154540899999999767459987777989999999999999
Q gi|254780933|r 45 PPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKE 124 (947)
Q Consensus 45 pP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~ 124 (947)
+|.+||.||+||+++-.+...+||- -.|.-+++.=-.|. + .-..+
T Consensus 7 APsPtG~LHiG~ar~al~n~~~Ak~--~~G~~~LRieDTD~--------------------------~-------r~~~e 51 (223)
T cd00418 7 APSPTGYLHIGHARAALLNYLYAKK--YGGKFILRFDDTDP--------------------------E-------REVEE 51 (223)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCCC--------------------------C-------CCHHH
T ss_conf 8898985428999999999999998--59989997236886--------------------------4-------01888
Q ss_pred HHHHHHHHHHHHCCEEECCC-CEECCC--HHHHHHHHHHHHHHHHCC
Q ss_conf 99999999998083664279-811588--679999999999999889
Q gi|254780933|r 125 SGGSILSQLKRLGASCDWSR-ERFTMD--EGMSNAVRNAFVVLYKDG 168 (947)
Q Consensus 125 ~~~~~~~~~~~lG~~~Dw~r-~y~T~d--~~y~~~v~~~F~~L~~~g 168 (947)
+.+.|.++++.||+ +|+. .|++.+ +.|++. ..+|.++|
T Consensus 52 ~~~~I~~dL~wLGl--~~d~~~~~QS~r~~~y~~~----~~~Li~~G 92 (223)
T cd00418 52 AEDSILEDLKWLGI--KWDEGPYYQSDRFDIYYEY----AEKLIEEG 92 (223)
T ss_pred HHHHHHHHHHHHCC--CCCCCEEEHHHHHHHHHHH----HHHHHHCC
T ss_conf 99999999999189--9998685387589999999----99997569
No 76
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.0016 Score=44.21 Aligned_cols=55 Identities=29% Similarity=0.393 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCC-CCCCCCCCCCCC
Q ss_conf 4310001225543124565302332025403444543123355-677543411011
Q gi|254780933|r 583 ALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQ-GRDINLDLERIA 637 (947)
Q Consensus 583 G~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~-~~D~~fs~~~i~ 637 (947)
-++.++.|.|||||+||+|.+.|+++-+....+||+++..-|. .-|++|+...++
T Consensus 268 E~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~kP~r~~~~d~~~~il~ 323 (521)
T COG1384 268 EWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPNRHIDFDFDLGILK 323 (521)
T ss_pred EEEEECCCCCCCCCCCCEECHHHHHHHCCHHHEEEEEEECCCCCCEECCCCCCHHH
T ss_conf 88985488665568785785999987539847332354058874433178877447
No 77
>TIGR00463 gltX_arch glutamyl-tRNA synthetase; InterPro: IPR004526 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=97.27 E-value=0.00042 Score=48.42 Aligned_cols=101 Identities=29% Similarity=0.359 Sum_probs=59.2
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 80899728449999865437889677999998767089835677881545408999999997674599877779899999
Q gi|254780933|r 37 GVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIE 116 (947)
Q Consensus 37 ~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~ 116 (947)
.+-++=| ||++||.||||||+.-++=+=+||-+ .|+-+++.==+| .+..+
T Consensus 100 G~VV~RF-aPnPsGpLhiGhArAa~lN~~fa~~Y--~GklIlR~dDTd-----------------P~tkr---------- 149 (600)
T TIGR00463 100 GEVVMRF-APNPSGPLHIGHARAAILNQYFAKKY--EGKLILRFDDTD-----------------PRTKR---------- 149 (600)
T ss_pred CCEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEECCC-----------------CCCCC----------
T ss_conf 7357731-85454587523354223204668541--881799975587-----------------88788----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCC--HHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCC
Q ss_conf 9999999999999999998083664279811588--67999999999999988943313320220377678
Q gi|254780933|r 117 KVWEWKKESGGSILSQLKRLGASCDWSRERFTMD--EGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKT 185 (947)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d--~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T 185 (947)
-..++-+.|.+++..||+-.| +-....| +.||.... +|-+.|..| |+.|.|
T Consensus 150 ----~~~Eayd~i~eDLdwLG~k~D--ev~y~Sdr~~~yYdY~~----kLIe~G~AY--------~C~c~~ 202 (600)
T TIGR00463 150 ----VKPEAYDMILEDLDWLGVKGD--EVVYQSDRIEIYYDYAR----KLIEMGKAY--------VCDCSP 202 (600)
T ss_pred ----CCHHHHHHHHHHHHHCCCCEE--EEEEEECCHHHHHHHHH----HHHHCCCCE--------ECCCCC
T ss_conf ----872466524877875284200--68983053015689999----998669834--------327984
No 78
>TIGR00464 gltX_bact glutamyl-tRNA synthetase; InterPro: IPR004527 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=97.10 E-value=0.0014 Score=44.50 Aligned_cols=89 Identities=31% Similarity=0.389 Sum_probs=49.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 49999865437889677999998767089835677881545408999999997674599877779899999999999999
Q gi|254780933|r 46 PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKES 125 (947)
Q Consensus 46 P~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~ 125 (947)
|.+||.||||-+||=..-=++|| ...|..+++. ||-..+ ....+.
T Consensus 8 PSPTG~LHiGg~RTAlFNyLfAr--~~~G~F~lRi--------------------------EDTD~e-------R~~~e~ 52 (513)
T TIGR00464 8 PSPTGYLHIGGARTALFNYLFAR--HTGGKFILRI--------------------------EDTDLE-------RNIEEA 52 (513)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH--HCCCCEEEEE--------------------------EECCCC-------CCCHHH
T ss_conf 88875435336899999999998--6389379987--------------------------536710-------072446
Q ss_pred HHHHHHHHHHHCCEEECCC-CEEC--CCHHHHHHH-----HHHHHHHHHCCCEEE
Q ss_conf 9999999998083664279-8115--886799999-----999999998894331
Q gi|254780933|r 126 GGSILSQLKRLGASCDWSR-ERFT--MDEGMSNAV-----RNAFVVLYKDGLIYR 172 (947)
Q Consensus 126 ~~~~~~~~~~lG~~~Dw~r-~y~T--~d~~y~~~v-----~~~F~~L~~~gliy~ 172 (947)
.+.|.+.|+.||+..| - .+.- +.|- +.+. .....+|.++|+.||
T Consensus 53 ~~~i~e~LkWlGi~wD--Es~~~gG~Y~Py-~QS~R~~~Y~~~~~~Ll~~g~AYr 104 (513)
T TIGR00464 53 EESILEGLKWLGISWD--ESVYVGGNYGPY-YQSQRLDIYKKYIKELLEEGLAYR 104 (513)
T ss_pred HHHHHHHHHHCCCCCC--CCCCCCCCCEEE-HHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 8999988874586746--675689863011-101367899999999974599344
No 79
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=96.89 E-value=0.00023 Score=50.29 Aligned_cols=57 Identities=26% Similarity=0.362 Sum_probs=40.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHH-HHHHHHCCCCCCHHH
Q ss_conf 530124554321013567776653012113378685200001443100012-255431245653023
Q gi|254780933|r 540 TSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNG-QKMSKSKGNVVDPID 605 (947)
Q Consensus 540 ~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G-~KMSKS~GNvidp~e 605 (947)
+|+-++|.||.++ |+.+.-|.++.. ..| .-+++..++.+.+| +|||||.||+|+..+
T Consensus 186 ~~iqiGGsDQ~gN-----i~~G~dL~r~~~---~~~-~~~lT~PLL~~~dG~~KmgKS~gnaIwLd~ 243 (405)
T PRK13354 186 ADIELGGTDQWFN-----ILMGRDLQRKLG---EEK-QVGITMPLLEGLDGTEKMSKSLGNYIGLDE 243 (405)
T ss_pred CCEEEECHHHHHH-----HHHHHHHHHHHC---CCC-CEEEEECCEECCCCCCCCCCCCCCCEECCC
T ss_conf 8379950868889-----997999999857---898-359960615788775532501278631479
No 80
>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.87 E-value=0.00021 Score=50.56 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=34.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 5530124554321013567776653012113378685200001443100012255431245653
Q gi|254780933|r 539 PTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVD 602 (947)
Q Consensus 539 P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvid 602 (947)
-+|+.+.|.||... +.++.-+.++.+ .+.| -++.+.++.+.+|+|||||.||.+.
T Consensus 150 ~~~~vpvG~DQ~~h-----iel~Rdia~r~n--~~~~--~~l~~pll~g~dG~KMSKS~~N~i~ 204 (268)
T cd00805 150 DVDIQLGGSDQRGN-----ITLGRDLIRRLG--YKKV--VGLTTPLLTGLDGGKMSKSEGNAIW 204 (268)
T ss_pred CCCCEECCHHHHHH-----HHHHHHHHHHHC--CCCC--EEEEECEEECCCCCCCCCCCCCCCC
T ss_conf 37714606008999-----999999999828--9761--4553110008998744678999501
No 81
>TIGR00440 glnS glutaminyl-tRNA synthetase; InterPro: IPR004514 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutaminyl-tRNA synthetase (6.1.1.18 from EC) is a class Ic synthetase and shows several similarities with glutamyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. Glutaminyl-tRNA synthetase is a relatively rare synthetase, found in the cytosolic compartment of eukaryotes, in Escherichia coli and a number of other Gram-negative bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln.; GO: 0000166 nucleotide binding, 0004819 glutamine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006425 glutaminyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=96.87 E-value=0.00091 Score=45.95 Aligned_cols=90 Identities=26% Similarity=0.322 Sum_probs=55.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCHHHCCHHHHHHHHHHHHH
Q ss_conf 4499998654378896779999987670898356778815454089999999976745-998777798999999999999
Q gi|254780933|r 45 PPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQS-SLTREDIGRDAFIEKVWEWKK 123 (947)
Q Consensus 45 pP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~-~~~~~~~g~~~f~~~~~~~~~ 123 (947)
||=+||-|||||+-...+ .|=..=++.|+= .|.... .-.+| .-
T Consensus 6 PPEPNGYLHIGHaK~I~~---------------NFG~Ak~y~G~C-------~LRFDDTNP~KE--------------~~ 49 (564)
T TIGR00440 6 PPEPNGYLHIGHAKSICL---------------NFGLAKEYKGTC-------NLRFDDTNPVKE--------------DV 49 (564)
T ss_pred CCCCCCCEEHHHHHHHHH---------------HCCCCCCCCCCE-------EEECCCCCCCCC--------------CC
T ss_conf 855787300102431344---------------203202017636-------442167888646--------------60
Q ss_pred HHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf 99999999999808366427981158867999999999999988943313
Q gi|254780933|r 124 ESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRD 173 (947)
Q Consensus 124 ~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~ 173 (947)
+|.+.|+++...||+.-.|.- |+...|....-..=..|-++|+.|-+
T Consensus 50 EY~eSIK~~V~WLGFkw~g~~---~YsSDYFD~Ly~~A~~LI~~G~AYV~ 96 (564)
T TIGR00440 50 EYVESIKRDVEWLGFKWEGKI---RYSSDYFDELYRYAVELIKKGLAYVD 96 (564)
T ss_pred HHHHHHHHHHHHCCCCCCCCE---EECHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 178887522222251247731---33304688999999999867960675
No 82
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.00056 Score=47.48 Aligned_cols=75 Identities=25% Similarity=0.271 Sum_probs=53.5
Q ss_pred EEEEECCCCHHCHHHHHHHHHCCHHHH--------------------------HHCCCEEEECCCCCCC--C--CCCCCC
Q ss_conf 999826740101024444441000123--------------------------1115423320248657--3--210000
Q gi|254780933|r 235 IIVSTTRPETMFGDVAIAVHPDDYRYK--------------------------ELIGKYATLPIVGRLI--P--IVSDVY 284 (947)
Q Consensus 235 l~v~TtrPeTl~g~~a~~v~P~d~~y~--------------------------~l~G~~~~~Pl~~~~i--p--i~~~~~ 284 (947)
..++|.+|||++|.++.||+|+.-... .+++.-..|||.++.+ | +..++|
T Consensus 208 ~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~f 287 (814)
T COG0495 208 DKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEF 287 (814)
T ss_pred HHHCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHH
T ss_conf 65424795669989872707888758998517764410024466357311674899970786678987418651669999
Q ss_pred CCCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 3421223203212477855656643
Q gi|254780933|r 285 PDPEFGDGAVKVTPAHDFNDFEIAK 309 (947)
Q Consensus 285 V~~~~GTG~V~~~Pah~~~Dy~~~~ 309 (947)
|+...|||+|+++|+|.+.|+....
T Consensus 288 v~~~~~~~~~~~~~~~~~k~gv~~g 312 (814)
T COG0495 288 VDECKGTGVVESVPAHAEKDGVFLG 312 (814)
T ss_pred HHHHCCCCCEEEEECCCCCCCEECC
T ss_conf 9886178715630456877631136
No 83
>KOG4426 consensus
Probab=96.86 E-value=0.0014 Score=44.68 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=38.8
Q ss_pred CCHH--CCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
Q ss_conf 2000--0144310001225543124565302332025403444543123355677543411011100
Q gi|254780933|r 576 FHIV--YMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYR 640 (947)
Q Consensus 576 fk~v--~~hG~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r 640 (947)
+.+| +.-|+|++++|+|.--.-|-+|-..+++++- +.-.....-..|+|-.|+.+.+.+.+
T Consensus 429 ~~RV~HvgFGlVLGeD~KkFkTRsgetVrL~DLLdEg----~kRs~~~Liergrdk~~tpeeL~~a~ 491 (656)
T KOG4426 429 YPRVEHVGFGLVLGEDKKKFKTRSGETVRLLDLLDEG----KKRSKEKLIERGRDKVLTPEELDAAQ 491 (656)
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCEEEHHHHHHHH----HHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 6420001333687467620004566514289888788----88899999971666548999999999
No 84
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=96.47 E-value=0.001 Score=45.65 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC--------------CCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEEC
Q ss_conf 4888998888764333210223--------------22235666553244431222121454202333432002441121
Q gi|254780933|r 359 RSKIVSLLEKSNLLDKTDSYRH--------------IVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIP 424 (947)
Q Consensus 359 ~~~ii~~L~~~g~l~~~~~~~h--------------~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P 424 (947)
-.-+...|-++|++.+....++ .-++||||+.+|+.+-.+|||++.+..++++++.++ .+.-.|
T Consensus 135 ~qw~F~~l~ekGliyr~~~~V~Wcp~~~T~LAn~eV~~G~~~r~~~~V~~k~~~qw~~kit~Ya~~Ll~~l~--~l~~wP 212 (822)
T PRK00390 135 TQWLFLKLYEKGLAYRKESPVNWCPVDQTVLANEQVIDGRSWRSGAPVEKKELPQWFLKITDYADELLDDLD--ELDGWP 212 (822)
T ss_pred HHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCEEEEEHHHHHHHHHHCCC--CCCCCC
T ss_conf 999999999889979523242007976877650444147643468704663044035520075888750210--024660
Q ss_pred CCCCHHHHHHHH
Q ss_conf 443113567641
Q gi|254780933|r 425 QSWDKSYYEWLE 436 (947)
Q Consensus 425 ~~~~~~~~~wl~ 436 (947)
++.+..-+|||.
T Consensus 213 ~~vk~mQ~nWIG 224 (822)
T PRK00390 213 EKVKTMQRNWIG 224 (822)
T ss_pred HHHHHHHCCCCC
T ss_conf 777665304334
No 85
>KOG1147 consensus
Probab=96.46 E-value=0.012 Score=37.76 Aligned_cols=50 Identities=30% Similarity=0.353 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf 999999999999808366427981158867999999999999988943313320
Q gi|254780933|r 123 KESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRI 176 (947)
Q Consensus 123 ~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~ 176 (947)
++|...|++++..||+--| .+|+...|.......-.+|-..|..|-+..|
T Consensus 249 ~eFe~~IleDl~~LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp 298 (712)
T KOG1147 249 EEFEDVILEDLSLLGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTP 298 (712)
T ss_pred HHHHHHHHHHHHHHCCCCC----EEEECHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 7899999877887085764----4453135599999999999863743136996
No 86
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.40 E-value=0.00067 Score=46.91 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHC
Q ss_conf 1000122554312456530233202540344454312
Q gi|254780933|r 585 VRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSI 621 (947)
Q Consensus 585 vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~ 621 (947)
|.+-||+|||||-||.|...+ ..+.+|--++.
T Consensus 195 lpGlDGrKMSKSy~NtI~Lf~-----~~k~l~K~I~~ 226 (436)
T PRK12284 195 LPGLDGRKMSKSYDNTIPLFS-----PREELKKAIFR 226 (436)
T ss_pred CCCCCCCCCCCCCCCCCCCCC-----CHHHHHHHHHC
T ss_conf 249998705578898064878-----96999998505
No 87
>TIGR00435 cysS cysteinyl-tRNA synthetase; InterPro: IPR002308 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=96.21 E-value=0.0019 Score=43.65 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=39.8
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCC
Q ss_conf 0899728449999865437889677999998767-089835677881
Q gi|254780933|r 38 VFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFER-MRGKNVLWQPGT 83 (947)
Q Consensus 38 ~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~r-m~G~~Vl~~~G~ 83 (947)
.--++..=|++=-..||||+|+++.=|++.||-+ ..||.|-|+.-+
T Consensus 22 ~V~~Y~CGpTVYd~~HiGhaR~~i~fD~~~R~L~d~~GY~V~yV~Ni 68 (660)
T TIGR00435 22 KVKMYVCGPTVYDYAHIGHARTAIVFDVLRRYLEDYLGYEVQYVQNI 68 (660)
T ss_pred EEEEEEECCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEE
T ss_conf 66799707317621030346630257888999988758867888643
No 88
>cd00808 GluRS_core Descriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The descriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer, that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.14 E-value=0.01 Score=38.33 Aligned_cols=62 Identities=35% Similarity=0.527 Sum_probs=40.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHH
Q ss_conf 44999986543788967799999876708983567788154540899999999767459987777989999999999999
Q gi|254780933|r 45 PPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKE 124 (947)
Q Consensus 45 pP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~ 124 (947)
+|.+||.||+||+++-.+.-.+||- ..|.-+++.=-.|.. + -..+
T Consensus 7 APsPtG~LHiG~~rtal~n~l~Ar~--~~G~f~LRieDtD~~-------------------R--------------~~~e 51 (239)
T cd00808 7 APSPTGYLHIGGARTALFNYLFAKK--HGGKFILRIEDTDQE-------------------R--------------SVEE 51 (239)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCCCC-------------------C--------------CCHH
T ss_conf 8898985338999999999999998--199899984568988-------------------7--------------8769
Q ss_pred HHHHHHHHHHHHCCEEECC
Q ss_conf 9999999999808366427
Q gi|254780933|r 125 SGGSILSQLKRLGASCDWS 143 (947)
Q Consensus 125 ~~~~~~~~~~~lG~~~Dw~ 143 (947)
+.+.|.++++.||+ +|+
T Consensus 52 ~~~~I~~dL~wLGl--~wD 68 (239)
T cd00808 52 AEEAILEDLKWLGI--DWD 68 (239)
T ss_pred HHHHHHHHHHHCCC--CCC
T ss_conf 99999999998188--877
No 89
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.06 E-value=0.013 Score=37.54 Aligned_cols=32 Identities=31% Similarity=0.393 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCC
Q ss_conf 0001225543124565302332025403444543123
Q gi|254780933|r 586 RDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIM 622 (947)
Q Consensus 586 ld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~ 622 (947)
..-+|+|||||.||.|...+ ..|.+|=-++.+
T Consensus 258 ~glDGkKMSKS~~n~I~L~D-----~~~~I~KKI~ka 289 (398)
T PRK12283 258 PGLDGQKMSKSYGNTIGLRE-----DPETVTKKIRTM 289 (398)
T ss_pred CCCCCCCCCCCCCCEEECCC-----CHHHHHHHHHHC
T ss_conf 69998645799999755528-----999999999746
No 90
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.03 E-value=0.03 Score=34.89 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=22.6
Q ss_pred HHHHHHHHCCC---CCCHHHHHCCCCHHHHHHHHHCCCC-CCCCCCCCCCC
Q ss_conf 12255431245---6530233202540344454312335-56775434110
Q gi|254780933|r 589 NGQKMSKSKGN---VVDPIDVIDQYGADALRFYFSIMAV-QGRDINLDLER 635 (947)
Q Consensus 589 ~G~KMSKS~GN---vidp~e~i~~yGaDalR~~l~~~~~-~~~D~~fs~~~ 635 (947)
.|+|||||.|| .|...+ ..|.+|--++..-. +...+.+++..
T Consensus 189 ~~~KMSKS~~n~~s~I~l~d-----~~~~i~kKi~~a~TDs~~~i~~d~~~ 234 (325)
T PRK00927 189 PTKKMSKSDGNDNSTINLLD-----DPKTIAKKIKKAVTDSERPIRYDDPG 234 (325)
T ss_pred CCCCCCCCCCCCCCEEECCC-----CHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 55101446799765565138-----99999999885757998775556899
No 91
>KOG1149 consensus
Probab=95.93 E-value=0.077 Score=31.88 Aligned_cols=126 Identities=25% Similarity=0.351 Sum_probs=60.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 49999865437889677999998767089835677881545408999999997674599877779899999999999999
Q gi|254780933|r 46 PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKES 125 (947)
Q Consensus 46 P~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~ 125 (947)
|.+||.||+|-++|--.-=++|| ...|+.+|+.=-+|-.-+ +...
T Consensus 40 PSPTGfLHlGgLRTALfNYLfAr--k~gGkFiLRiEDTDq~R~---------------------------------v~gs 84 (524)
T KOG1149 40 PSPTGFLHLGGLRTALFNYLFAR--KKGGKFILRIEDTDQKRL---------------------------------IRGS 84 (524)
T ss_pred CCCCCCEEHHHHHHHHHHHHHHH--HCCCEEEEEECCCCCCCC---------------------------------CCCH
T ss_conf 89876322013899999999987--328848998515651000---------------------------------4644
Q ss_pred HHHHHHHHHHHCCEEECCCCE-ECCC-HHHHHHHHHHH-----HHHHHCCCEEECC----------------CEEE-ECC
Q ss_conf 999999999808366427981-1588-67999999999-----9999889433133----------------2022-037
Q gi|254780933|r 126 GGSILSQLKRLGASCDWSRER-FTMD-EGMSNAVRNAF-----VVLYKDGLIYRDK----------------RIVN-WDP 181 (947)
Q Consensus 126 ~~~~~~~~~~lG~~~Dw~r~y-~T~d-~~y~~~v~~~F-----~~L~~~gliy~~~----------------~~v~-w~p 181 (947)
...+.+.++..|+ +|+-.= .--+ -.|..+..-.. .+|.+.|..||-+ +.++ |+-
T Consensus 85 ~e~i~~~L~w~nl--~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~ 162 (524)
T KOG1149 85 EEAIYEDLKWANL--DWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDR 162 (524)
T ss_pred HHHHHHHHHHCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 7789999986299--96558886898885245789999999999998659756741588899999886531478874020
Q ss_pred CCCCCCCHHHHHCCCCCCCEEEEEEEEE
Q ss_conf 7678014868654146876699996530
Q gi|254780933|r 182 SLKTSVSDLEVIQKEVDGNLWYVRYPLV 209 (947)
Q Consensus 182 ~~~T~ls~~Ev~~~~~~~~~~~ik~~l~ 209 (947)
+|.+ ||++|+.++..+|+-+.|+|++.
T Consensus 163 kca~-ls~~ei~~~lakg~pf~iRFrl~ 189 (524)
T KOG1149 163 KCAN-LSDAEIKQKLAKGTPFTIRFRLP 189 (524)
T ss_pred HHCC-CCHHHHHHHHHCCCCEEEEEECC
T ss_conf 2133-57999999974699806997368
No 92
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=95.80 E-value=0.0019 Score=43.60 Aligned_cols=62 Identities=24% Similarity=0.311 Sum_probs=29.7
Q ss_pred CCCCCCCCCCCCCCC-HHHHHHHH---HHHCCCCCCCCCCCCCCHHCC-CC-CCCCHHHHHHHHHCCCCCCHHH
Q ss_conf 555301245543210-13567776---653012113378685200001-44-3100012255431245653023
Q gi|254780933|r 538 YPTSVLVTGFDILFF-WVARMMMM---GLYFMKDAEGKGIEPFHIVYM-HA-LVRDKNGQKMSKSKGNVVDPID 605 (947)
Q Consensus 538 ~P~d~~~~G~Di~r~-W~~~~l~~---~~~l~~~~~~~~~~Pfk~v~~-hG-~vld~~G~KMSKS~GNvidp~e 605 (947)
|-+|...-|.||..- =++|-|+. +.+ .. .=..| +.++. .+ -|-+-+|+|||||.||.|...+
T Consensus 147 y~a~~VPVGeDQ~QHlEltRdiA~rFN~~y--g~---~f~~P-~~~i~~~~~~i~gldgkKMSKS~~n~I~L~D 214 (328)
T PRK12556 147 FQATHVPVGKDQIQHIEIARDIATYFNHTF--GT---TFTLP-EYVIQEEGAILPGLDGRKMSKSYGNVIPLFA 214 (328)
T ss_pred CCCCEECCCCCHHHHHHHHHHHHHHHHHHC--CC---CCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
T ss_conf 266450468106999999999999998755--75---56786-4333765433108998765568788134768
No 93
>KOG1195 consensus
Probab=95.73 E-value=0.17 Score=29.27 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=50.3
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999999876986445345489980899728449999865437889677999998767089835677
Q gi|254780933|r 13 EQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQ 80 (947)
Q Consensus 13 E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~ 80 (947)
+.-.+..|+....|-.. .....++.++-+--||.+-..|+||.++-++.-+++.-.+-+|+.|..+
T Consensus 88 k~~l~~i~~~~~~~g~~--~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~ 153 (567)
T KOG1195 88 KSVLPIIEEQREKYGKN--ELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRV 153 (567)
T ss_pred HHHHHHHHHHHCCCCCC--CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEH
T ss_conf 99999999975235742--2466756999804887666541241134454167651477618714302
No 94
>pfam00579 tRNA-synt_1b tRNA synthetases class I (W and Y).
Probab=95.62 E-value=0.004 Score=41.29 Aligned_cols=57 Identities=25% Similarity=0.241 Sum_probs=31.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC-CCCCCCHHCCCCCCCCHHH-HHHHHHCCC-CCCH
Q ss_conf 53012455432101356777665301211337-8685200001443100012-255431245-6530
Q gi|254780933|r 540 TSVLVTGFDILFFWVARMMMMGLYFMKDAEGK-GIEPFHIVYMHALVRDKNG-QKMSKSKGN-VVDP 603 (947)
Q Consensus 540 ~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~-~~~Pfk~v~~hG~vld~~G-~KMSKS~GN-vidp 603 (947)
+|+.+.|.||-.. .++ +.-+.++.+.. -..| ..+.|.++.+.+| +|||||.|| .|..
T Consensus 150 ~~i~~gG~DQ~~~---~~l--~rdl~~k~~~~~~~~p--~~l~~~ll~~~~G~~KMSKS~~nsaI~L 209 (291)
T pfam00579 150 ADLQPGGSDQWGH---IEL--GRDLARRFNKKVFKKP--VGLTNPLLTGLDGGKKMSKSAGNSAIFL 209 (291)
T ss_pred CCCCCCCCCHHHH---HHH--HHHHHHHHCCCCCCCC--EEEECCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 6756656004899---999--9999999578567883--4874166226678766367899972666
No 95
>cd00395 Tyr_Trp_RS_core Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.61 E-value=0.0041 Score=41.15 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHH-HHHHHHCCCCC
Q ss_conf 530124554321013567776653012113378685200001443100012-25543124565
Q gi|254780933|r 540 TSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNG-QKMSKSKGNVV 601 (947)
Q Consensus 540 ~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G-~KMSKS~GNvi 601 (947)
+|+.+.|.||.... .++.-+.++.+ ....| ..+.+.++.+-+| +|||||.||.+
T Consensus 142 ~~~v~~G~DQ~~~~-----~l~Rdia~k~~-~~~~p--~~l~~~~l~~l~G~~KMSKS~~ns~ 196 (274)
T cd00395 142 ADLVPGGSDQDPHI-----ELGRDLARRFN-GFKKP--VALTSPLLTGLDGGKKMSKSDGNAI 196 (274)
T ss_pred CCCCCCCCCHHHHH-----HHHHHHHHHHC-CCCCC--EEEECCCCCCCCCCCCCCCCCCCCE
T ss_conf 65455561179999-----99999999944-99998--6872377446899767457899844
No 96
>KOG1148 consensus
Probab=95.44 E-value=0.039 Score=34.02 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=13.3
Q ss_pred CCEEEECCCCCHH-HHHHHHHCC
Q ss_conf 3203212477855-656643046
Q gi|254780933|r 291 DGAVKVTPAHDFN-DFEIAKRHG 312 (947)
Q Consensus 291 TG~V~~~Pah~~~-Dy~~~~~~~ 312 (947)
-|+.|+--|-..+ +|..++.+|
T Consensus 258 NG~LHIGHaKAInvNFgyAk~~~ 280 (764)
T KOG1148 258 NGILHIGHAKAINVNFGYAKAHG 280 (764)
T ss_pred CCEEEECCHHHEEECHHHHHHHC
T ss_conf 85656321343010124466509
No 97
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=95.41 E-value=0.051 Score=33.17 Aligned_cols=139 Identities=15% Similarity=0.147 Sum_probs=72.8
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCH-HHHH-HHHHHHHHHHC---CCCC-CCCCCCCCCC-CCHHHHHHHHH
Q ss_conf 025403444543123355677543411011100-0012-34443333202---4445-7767677433-31555677999
Q gi|254780933|r 608 DQYGADALRFYFSIMAVQGRDINLDLERIAGYR-NFIT-KFWNAIRFSKM---KNAR-HSVSFVPQDV-KWIVNKWIIKR 680 (947)
Q Consensus 608 ~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r-~f~n-KLwNa~rf~~~---~~~~-~~~~~~~~~~-~~~~Drwils~ 680 (947)
++-|.||+||++++..+ ..++.||.+.+.... |-.- -.+--+|-... .... .......... .....+-++..
T Consensus 1 e~Ig~~Airy~~L~~~~-~~~~~FD~d~~~~~~gnt~~YiQYa~aR~~SIl~k~~~~~~~~~~~~~~~l~~~~e~~Li~~ 79 (156)
T cd07956 1 EEVGVGAVKYQDLSNKR-IKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILL 79 (156)
T ss_pred CCCCHHHHHHHHHHCCC-CCCCEECHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHHHH
T ss_conf 96423578889986389-99845529998623689851124899999999997245453322254200499899999999
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHH---HHHHHHHHHHHHCCCCC
Q ss_conf 999998889987531001024577765310013688986476530567144432---10001456764034567
Q gi|254780933|r 681 LATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSE---TLSCFSYVLYNVCKLLH 751 (947)
Q Consensus 681 l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~~~~~~~~---~~~~l~~vl~~~l~ll~ 751 (947)
+...-.-+..+.++++.+..+.-++++. ..|.++|= -. +..+.+.+...+ .......+|+..+.+|.
T Consensus 80 l~~fp~vl~~a~~~~~P~~l~~YL~~La-~~F~~fY~-~~--~Ii~~~~~~~~~RL~L~~a~~~vL~~gL~lLG 149 (156)
T cd07956 80 LAKFPEVVKNAAETLEPHTIATYLFDLA-HAFSKFYN-AC--PVLGAEEELRNARLALVAAARQVLANGLDLLG 149 (156)
T ss_pred HHCCHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHH-HC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9657289999999707069999999999-99999997-49--88789889999999999999999999865119
No 98
>KOG0435 consensus
Probab=95.40 E-value=0.0025 Score=42.75 Aligned_cols=51 Identities=18% Similarity=0.384 Sum_probs=41.0
Q ss_pred CCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHH
Q ss_conf 235666553244431222121454202333432002441121443113567641
Q gi|254780933|r 383 PHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLE 436 (947)
Q Consensus 383 p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~ 436 (947)
+.+||||.+|+.....||||++++.++++++.++. --+| |+ .++.-.|||.
T Consensus 199 G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~-L~~W-~~-vk~mQrnWIG 249 (876)
T KOG0435 199 GCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLET-LPEW-PE-VKDMQRNWIG 249 (876)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HH-HHHHHHHHCC
T ss_conf 75534565465778888986316889999999875-0301-66-8999874312
No 99
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=95.21 E-value=0.005 Score=40.52 Aligned_cols=57 Identities=26% Similarity=0.320 Sum_probs=39.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHH-HHHHHCCCCCCHHH
Q ss_conf 5301245543210135677766530121133786852000014431000122-55431245653023
Q gi|254780933|r 540 TSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQ-KMSKSKGNVVDPID 605 (947)
Q Consensus 540 ~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~-KMSKS~GNvidp~e 605 (947)
+|+-++|.||..+ |+.+.-|.++.. ..| .-.++..++.+.+|. +||||.||.|+..+
T Consensus 182 ~~lqiGGsDQwgN-----i~~G~dLir~~~---~~~-~~glT~PLLt~~dG~K~gsKS~gnaIwLd~ 239 (402)
T PRK05912 182 ADLELGGTDQWFN-----ILVGRDLQRRYG---QEP-QFGLTMPLLTGLDGVKKMSKSLGNYIWLDE 239 (402)
T ss_pred CCEEEECHHHHHH-----HHHHHHHHHHHC---CCC-CEEEEECCEECCCCCCCCCCCCCCCEECCC
T ss_conf 3347730548999-----998999999856---898-379984505778768435667998701789
No 100
>cd00806 TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer, which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=94.99 E-value=0.012 Score=37.80 Aligned_cols=12 Identities=50% Similarity=0.498 Sum_probs=9.9
Q ss_pred HHHHHHCCCC-CC
Q ss_conf 2554312456-53
Q gi|254780933|r 591 QKMSKSKGNV-VD 602 (947)
Q Consensus 591 ~KMSKS~GNv-id 602 (947)
+|||||.+|. |.
T Consensus 191 ~KMSKS~~ns~I~ 203 (282)
T cd00806 191 KKMSKSDPNTIIF 203 (282)
T ss_pred CCCCCCCCCCCEE
T ss_conf 7555689997445
No 101
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=94.83 E-value=0.0046 Score=40.82 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=33.8
Q ss_pred CCCCCCCCCCCCCCC-HHHHHHHH--HHHCCCCCCCCCCCCCCHHCC-CCCCCCHHHH-HHHHHCCCCCCHHHHHCCCCH
Q ss_conf 555301245543210-13567776--653012113378685200001-4431000122-554312456530233202540
Q gi|254780933|r 538 YPTSVLVTGFDILFF-WVARMMMM--GLYFMKDAEGKGIEPFHIVYM-HALVRDKNGQ-KMSKSKGNVVDPIDVIDQYGA 612 (947)
Q Consensus 538 ~P~d~~~~G~Di~r~-W~~~~l~~--~~~l~~~~~~~~~~Pfk~v~~-hG~vld~~G~-KMSKS~GNvidp~e~i~~yGa 612 (947)
|-+|+..-|.||... =++|-++. +..+-.+. -..| ..++. .|.|.+-+|+ |||||.||.|...| ..
T Consensus 141 y~a~~VPVG~DQ~qHlELtRdiA~rfN~~yg~~~---f~~P-~~~~~~~~ri~~Ldg~~KMSKS~~n~I~L~D-----~~ 211 (333)
T PRK12282 141 FKATLVPVGDDQLPMIEQTNEIVRRFNHTYGTDV---LVEP-EALLPEAGRLPGLDGKAKMSKSLGNAIYLSD-----SA 211 (333)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC---CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCEECCC-----CH
T ss_conf 3788076665259999999999999998709865---6886-2304545667299985010599999621448-----99
Q ss_pred HHHHHHHHC
Q ss_conf 344454312
Q gi|254780933|r 613 DALRFYFSI 621 (947)
Q Consensus 613 DalR~~l~~ 621 (947)
|.+|--+..
T Consensus 212 ~~I~kKI~k 220 (333)
T PRK12282 212 DTIKKKVMS 220 (333)
T ss_pred HHHHHHHHH
T ss_conf 999999883
No 102
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.75 E-value=0.01 Score=38.24 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=34.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 5301245543210135677766530121133786852000014431000122554312456
Q gi|254780933|r 540 TSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNV 600 (947)
Q Consensus 540 ~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNv 600 (947)
+|+-++|.||-++ . +++.-+.++... ..| -.+++.++.+.+|.|||||.||.
T Consensus 181 ~dlq~GG~DQ~~n---i--~~grdl~rr~g~--~~~--~~lt~PLL~~ldG~KmgKs~~~a 232 (401)
T COG0162 181 KDLQLGGSDQWGN---I--LAGRDLIRRLGQ--KKV--VGLTTPLLTGLDGKKMGKSEGGA 232 (401)
T ss_pred CCHHCCCHHHHHH---H--HHHHHHHHHHCC--CCE--EEEEECCCCCCCCCCCCCCCCCC
T ss_conf 5231187678999---9--999999998089--972--89983550389888156667786
No 103
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=94.43 E-value=0.4 Score=26.67 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998899999999999999866079236785888999999999999999999
Q gi|254780933|r 881 FVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRI 935 (947)
Q Consensus 881 ~~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~ 935 (947)
.++++.+++++|++++.++..++.+|+++.|-+.+...-+.+.-+.+.+++++++
T Consensus 561 ~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 615 (638)
T PRK10636 561 LRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLE 615 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999998439202356578999999999999999999
No 104
>PRK00574 gltX glutamyl-tRNA synthetase; Reviewed
Probab=94.32 E-value=0.23 Score=28.40 Aligned_cols=78 Identities=13% Similarity=0.186 Sum_probs=47.3
Q ss_pred CCCCCCCCC-CCCC--HHHHHHHHHHHCCCCCCCCCCCCCCHHCCC-CCCCCHHHHHHHHHCCCCC-CHHHHHC-CCCHH
Q ss_conf 530124554-3210--135677766530121133786852000014-4310001225543124565-3023320-25403
Q gi|254780933|r 540 TSVLVTGFD-ILFF--WVARMMMMGLYFMKDAEGKGIEPFHIVYMH-ALVRDKNGQKMSKSKGNVV-DPIDVID-QYGAD 613 (947)
Q Consensus 540 ~d~~~~G~D-i~r~--W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~h-G~vld~~G~KMSKS~GNvi-dp~e~i~-~yGaD 613 (947)
+|-+..|+. +||| |+.++- .+..+++-..+ ..| .++| +++++++|+||||..|-+. ...+.-+ -|=++
T Consensus 202 VDD~~M~ITHVIRGedhlsnTp-kqi~ly~Alg~--~~P---~faHlPLi~~~dg~KLSKR~g~~~~sv~~yre~GylPe 275 (489)
T PRK00574 202 VDDHLMEITHVIRGEDHISNTP-KQIMIYEAFGW--EPP---KFGHMPLILNEDRKKLSKRDGATLQFIEDYRELGYLPE 275 (489)
T ss_pred CCCCCCCCCEEECCHHHHHHHH-HHHHHHHHHCC--CCC---EEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCH
T ss_conf 4751258764303521577639-99999998289--997---47851113789998166667970157999998798666
Q ss_pred HHHHHHHCCC
Q ss_conf 4445431233
Q gi|254780933|r 614 ALRFYFSIMA 623 (947)
Q Consensus 614 alR~~l~~~~ 623 (947)
|+.=||+..+
T Consensus 276 Al~NyLa~LG 285 (489)
T PRK00574 276 AIFNFIALLG 285 (489)
T ss_pred HHHHHHHHHC
T ss_conf 9999999807
No 105
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=94.16 E-value=0.013 Score=37.59 Aligned_cols=15 Identities=47% Similarity=0.434 Sum_probs=11.5
Q ss_pred HHHHHH-CCCCCCHHH
Q ss_conf 255431-245653023
Q gi|254780933|r 591 QKMSKS-KGNVVDPID 605 (947)
Q Consensus 591 ~KMSKS-~GNvidp~e 605 (947)
+||||| .+|.|...|
T Consensus 219 ~KMSkS~~~~~I~l~D 234 (333)
T PRK08560 219 IKMSKSKPGSAIFVHD 234 (333)
T ss_pred CCCCCCCCCCCEEECC
T ss_conf 8678899999474158
No 106
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.05 E-value=0.012 Score=37.70 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=15.1
Q ss_pred CCCCHHH-HHHHHHCCC-CCCHH
Q ss_conf 3100012-255431245-65302
Q gi|254780933|r 584 LVRDKNG-QKMSKSKGN-VVDPI 604 (947)
Q Consensus 584 ~vld~~G-~KMSKS~GN-vidp~ 604 (947)
.+.+-+| +|||||.+| +|...
T Consensus 189 ~i~gL~g~~KMSkS~~ns~I~L~ 211 (314)
T COG0180 189 RLPGLDGPGKMSKSDPNSAIFLL 211 (314)
T ss_pred CCCCCCCCCCCCCCCCCCEEECC
T ss_conf 46478999866666999824504
No 107
>cd02156 nt_trans nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=93.77 E-value=0.029 Score=35.01 Aligned_cols=71 Identities=21% Similarity=0.110 Sum_probs=52.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 49999865437889677999998767089835677881545408999999997674599877779899999999999999
Q gi|254780933|r 46 PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKES 125 (947)
Q Consensus 46 P~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~ 125 (947)
|..+|.+|+||.+.....+.++| +++..+.++++++.|.+.... .. ..+.++.
T Consensus 4 ~g~fd~~H~GH~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--------~~-------------~~~~~~r 56 (147)
T cd02156 4 PGPFDPLHLGHLRLIERADELAR------YGGDELIVIDDTDPPIKKLKG--------KP-------------LESLEER 56 (147)
T ss_pred EEECCCCCHHHHHHHHHHHHHHH------HCCCCEEEEECCCCCHHHCCC--------CC-------------CCCHHHH
T ss_conf 86048767899999999999999------769928999789991453378--------76-------------7689999
Q ss_pred HHHHHHHHHHHCCEEECC
Q ss_conf 999999999808366427
Q gi|254780933|r 126 GGSILSQLKRLGASCDWS 143 (947)
Q Consensus 126 ~~~~~~~~~~lG~~~Dw~ 143 (947)
...+......+|+..||.
T Consensus 57 ~~~~~~~~~~~~~~~~~~ 74 (147)
T cd02156 57 LEMLREALKDLGVVLDFD 74 (147)
T ss_pred HHHHHHHCCCEEEEEECC
T ss_conf 999998288814998577
No 108
>TIGR00464 gltX_bact glutamyl-tRNA synthetase; InterPro: IPR004527 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=93.54 E-value=0.034 Score=34.44 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=35.2
Q ss_pred CCCCCCC-CCCCCC--HH---HHHHHHHHHCCCCCCCCCC-CCCCHHCCCC-CCCCHHHHHHHHHCCCCCC
Q ss_conf 5301245-543210--13---5677766530121133786-8520000144-3100012255431245653
Q gi|254780933|r 540 TSVLVTG-FDILFF--WV---ARMMMMGLYFMKDAEGKGI-EPFHIVYMHA-LVRDKNGQKMSKSKGNVVD 602 (947)
Q Consensus 540 ~d~~~~G-~Di~r~--W~---~~~l~~~~~l~~~~~~~~~-~Pfk~v~~hG-~vld~~G~KMSKS~GNvid 602 (947)
+|-+.-| -|+||| |+ ...|++.-|| ... .| .|+|= ||+|++|+||||..|.++.
T Consensus 214 vDD~lM~IThViRGedHisNTPkQI~iy~Al------g~~~iP---~f~H~p~I~~~~gKKLSKRdg~~~~ 275 (513)
T TIGR00464 214 VDDYLMKITHVIRGEDHISNTPKQILIYKAL------GWKRIP---TFAHLPLILNEDGKKLSKRDGKTAT 275 (513)
T ss_pred EECCCCCCCEEEECCHHHCCCHHHHHHHHHC------CCCCCC---CEEEEEEEECCCCCEEECCCCHHHH
T ss_conf 8533255451441202006718999999970------889888---1553535856988400120640257
No 109
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=93.10 E-value=0.42 Score=26.51 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=28.4
Q ss_pred CEEEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 808997284-499998654378896779999987670898356778815454
Q gi|254780933|r 37 GVFCIAMPP-PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAG 87 (947)
Q Consensus 37 ~~f~~~~pp-P~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~G 87 (947)
+++.++.|- | ||.+|+||.... .+ +.+++.+ |++|.+..+ |-|.
T Consensus 29 ~~~rv~~G~~P--TG~lHLGh~v~~-~k--~~~lQd~-g~~~~~~Ia-D~hA 73 (333)
T PRK08560 29 EEPKAYIGFEP--SGFIHLGHLVTM-NK--LADLQKA-GFKVTVLLA-DWHA 73 (333)
T ss_pred CCCEEEECCCC--CCCCHHHHHHHH-HH--HHHHHHC-CCCEEEEEC-CCEE
T ss_conf 99889966178--984538999999-99--9999977-991899961-3223
No 110
>PTZ00248 eukaryotic translation initiation factor 2 alpha subunit; Provisional
Probab=93.02 E-value=0.26 Score=28.04 Aligned_cols=63 Identities=13% Similarity=0.208 Sum_probs=40.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999824454999999988999999999999998-6607923678588899999999999999999999
Q gi|254780933|r 871 LFLAIGDFVDFVKERSRLKKSLEKVLDELSSIK-KKLENNQFVEKAPPSILQAEKERFSKVEKKRISL 937 (947)
Q Consensus 871 ~~i~l~~~iD~~~e~~rl~K~l~~l~~~i~~~~-~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l 937 (947)
+|+-.....|.+.-+..|++.++.++..|.+.+ +++. |.-||+-|-+.+..-|++..++.+.-
T Consensus 228 lYvitt~t~dk~~Gi~~l~~ai~~I~~~I~~~~gG~~~----vk~~Pk~V~~~de~~l~~~me~~e~~ 291 (324)
T PTZ00248 228 QYVIVTTCIDKDAGVKIMKQALEVISNKIKKYKGGDFK----QKGEPKVVGGDDEKHLEDLLEKDESE 291 (324)
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEE----EEECCEECCHHHHHHHHHHHHHHHHH
T ss_conf 17999741578888999999999999998644498179----96487523715489999999998764
No 111
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=92.77 E-value=0.73 Score=24.71 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999998899999999999999866079236785888999999999999999999999999998619
Q gi|254780933|r 881 FVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIRML 947 (947)
Q Consensus 881 ~~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l~~l 947 (947)
.++|..+++++|++++++++.++++|+++.|-.. +.+.+.+--+.+.+.+++++.+.+.-..|+.|
T Consensus 566 ~~~~~~~~e~~i~~~e~~~~~l~~~l~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~W~eL~~l 631 (632)
T PRK11147 566 LQRELEQLPQLLEDLEAEIEALQAQVADADFFSQ-PHEQTQKVLADLADAEQELEVAFERWEELEAL 631 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999899999999999999998579320058-69999999999999999999999999997576
No 112
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=92.32 E-value=0.061 Score=32.59 Aligned_cols=77 Identities=23% Similarity=0.229 Sum_probs=39.1
Q ss_pred CCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCH--HHHHHHHHCC
Q ss_conf 33201011110001234555301245543210135677766530121133786852000014431000--1225543124
Q gi|254780933|r 521 PFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDK--NGQKMSKSKG 598 (947)
Q Consensus 521 p~~~l~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~--~G~KMSKS~G 598 (947)
|.|++=||-...-=..+.-+|....|.||-.- +|++.-+ .+..... ..| .++.|.|+.+- .|.|||||..
T Consensus 208 ~~SqllYP~MQa~Di~~L~vDi~~gGmDQRKi---~mLARey--~~~~~~k-~kp--iil~h~mlpGL~~g~~KMSkSdp 279 (399)
T PTZ00126 208 PCAQLLYPCMQCADIFFLGADICQLGMDQRKV---NMLAREY--CDLKKIK-KKP--IILSHHMLPGLLEGQEKMSKSDP 279 (399)
T ss_pred CHHHHHHHHHHCCCHHHCCCCEEECCHHHHHH---HHHHHHH--HHHCCCC-CCC--EEEECCCCCCCCCCCCCCCCCCC
T ss_conf 46766314554151330567644336019999---9999998--7652887-786--79857777655668765666898
Q ss_pred CC-CCHHH
Q ss_conf 56-53023
Q gi|254780933|r 599 NV-VDPID 605 (947)
Q Consensus 599 Nv-idp~e 605 (947)
|. |+..|
T Consensus 280 ~saI~m~D 287 (399)
T PTZ00126 280 NSAIFMED 287 (399)
T ss_pred CCEEEECC
T ss_conf 77212018
No 113
>KOG2916 consensus
Probab=91.90 E-value=0.28 Score=27.79 Aligned_cols=52 Identities=12% Similarity=0.240 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 24454999999988999999999999998660792367858889999999999999
Q gi|254780933|r 875 IGDFVDFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKV 930 (947)
Q Consensus 875 l~~~iD~~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~ 930 (947)
....-|.++-...|+..+..+...|..-.++.. |.-.|+-|-+..+..|+..
T Consensus 230 TT~tldK~~g~e~l~~Ai~~i~~~I~~~~G~~~----V~~~pk~vte~d~~~l~~~ 281 (304)
T KOG2916 230 TTQTLDKTKGLEVLEEAIEVIISKIEEYGGTFT----VIMEPKLVTETDEAELARR 281 (304)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEE----EEECCEECCCCCHHHHHHH
T ss_conf 886302011199999999999998875097799----9857710243348999988
No 114
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=91.59 E-value=0.16 Score=29.64 Aligned_cols=89 Identities=16% Similarity=0.212 Sum_probs=49.6
Q ss_pred CCCCCCCCC-CCCC--HHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHC-CCCHHHH
Q ss_conf 530124554-3210--13567776653012113378685200001443100012255431245653023320-2540344
Q gi|254780933|r 540 TSVLVTGFD-ILFF--WVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVID-QYGADAL 615 (947)
Q Consensus 540 ~d~~~~G~D-i~r~--W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvidp~e~i~-~yGaDal 615 (947)
+|-+..|+. ++|| |+...- .+..+++-..+ ..| ....+++|++++|+||||..|- ++..+.-+ -|=.+|+
T Consensus 200 VDD~~m~IthviRg~d~l~~t~-~~~~l~~alg~--~~p--~~~h~pli~~~~g~klskR~g~-~sv~~yr~~GylPeAl 273 (461)
T PRK12558 200 VDDIDMGVTHIIRGDDHVTNTG-VQIALFRALGA--EPP--VFGHHNLLTTASGEGLSKRTGA-LSVGSLREAGYEPMAV 273 (461)
T ss_pred ECCCCCCCCEEEECHHHHHHCH-HHHHHHHHHCC--CCC--EEEECCEEECCCCCCCCCCCCC-CCHHHHHHCCCCCHHH
T ss_conf 5575578854463685886159-99999999579--998--0897134568999816666897-5899999879984789
Q ss_pred HHHHHCCC-CCCCCCCCCCC
Q ss_conf 45431233-55677543411
Q gi|254780933|r 616 RFYFSIMA-VQGRDINLDLE 634 (947)
Q Consensus 616 R~~l~~~~-~~~~D~~fs~~ 634 (947)
.=||+..+ +++.+-.|+.+
T Consensus 274 ~NyLalLGWs~~~~Ei~sl~ 293 (461)
T PRK12558 274 ASLAVLLGTSENVDAAPDMA 293 (461)
T ss_pred HHHHHHHCCCCCCHHHHHHH
T ss_conf 99999847999806776488
No 115
>pfam00579 tRNA-synt_1b tRNA synthetases class I (W and Y).
Probab=91.20 E-value=0.21 Score=28.66 Aligned_cols=44 Identities=25% Similarity=0.441 Sum_probs=30.1
Q ss_pred CEEEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 808997284-499998654378896779999987670898356778815454
Q gi|254780933|r 37 GVFCIAMPP-PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAG 87 (947)
Q Consensus 37 ~~f~~~~pp-P~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~G 87 (947)
++|.++.|. | ||.||+||.... -.+.+++.. |.+|.+..| |-|+
T Consensus 4 k~~~vy~G~~P--Tg~lHlGhl~~~---~~~~~lq~~-g~~~~~lia-d~~a 48 (291)
T pfam00579 4 RPLRVYTGFDP--TGPLHLGYLVPL---MKLVQFQQA-GHEVFFLIG-DLTA 48 (291)
T ss_pred CCCEEEEEECC--CCHHHHHHHHHH---HHHHHHHHC-CCCEEEEEC-CCEE
T ss_conf 98189973488--963077989999---999999978-990999973-8331
No 116
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=90.50 E-value=0.25 Score=28.19 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=18.1
Q ss_pred HHCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 00014431000122554312456
Q gi|254780933|r 578 IVYMHALVRDKNGQKMSKSKGNV 600 (947)
Q Consensus 578 ~v~~hG~vld~~G~KMSKS~GNv 600 (947)
....+++|++++|+||||+.|-.
T Consensus 223 ~y~H~pli~~~~G~KLSKr~~a~ 245 (299)
T PRK05710 223 RYLHHPLVLNPDGAKLSKQNGAP 245 (299)
T ss_pred CEEEECCEECCCCCCCCCCCCCC
T ss_conf 57962222786988257879983
No 117
>PRK12410 glutamyl-tRNA synthetase; Provisional
Probab=90.08 E-value=0.36 Score=26.95 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=32.7
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCHHHHHC-CCCHHHHHHHHHCCCCCC
Q ss_conf 01443100012255431245653023320-254034445431233556
Q gi|254780933|r 580 YMHALVRDKNGQKMSKSKGNVVDPIDVID-QYGADALRFYFSIMAVQG 626 (947)
Q Consensus 580 ~~hG~vld~~G~KMSKS~GNvidp~e~i~-~yGaDalR~~l~~~~~~~ 626 (947)
..+.+|++.+|+||||..|.+ +..++-+ -|=..|+.=||+..+...
T Consensus 223 ~H~pli~~~~g~kLSKR~g~~-~i~~yre~GylPeAl~NyLalLG~~~ 269 (433)
T PRK12410 223 AHLPIILNEEGKKMSKRDNAS-SVKWLLEQGFLPEAIANYLILLGNKT 269 (433)
T ss_pred ECCCCEECCCCCCCCCCCCCC-CHHHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf 320100189998556668983-88889767987599999999828999
No 118
>cd00418 GlxRS_core Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The descriminating form of GluRS differs from GlnRS and the non-descriminating form of GluRS in their C-terminal anti-codon binding domains.
Probab=89.72 E-value=0.12 Score=30.36 Aligned_cols=61 Identities=23% Similarity=0.408 Sum_probs=37.6
Q ss_pred HHCCCCCCCCHHHHHHHHHCCCC-CC---------HH----HHHC--CCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 00014431000122554312456-53---------02----3320--254034445431233556775434110111
Q gi|254780933|r 578 IVYMHALVRDKNGQKMSKSKGNV-VD---------PI----DVID--QYGADALRFYFSIMAVQGRDINLDLERIAG 638 (947)
Q Consensus 578 ~v~~hG~vld~~G~KMSKS~GNv-id---------p~----e~i~--~yGaDalR~~l~~~~~~~~D~~fs~~~i~~ 638 (947)
....++++++++|+||||++|-- |+ |. ..+. -|-++|++=|++..+-...|..|+.+.++.
T Consensus 139 ~~~H~p~l~~~~g~kLSKR~~~~~i~~~~~~gwdDprl~tl~~~r~~G~~peai~n~~~~lG~s~~~~~~~~~~l~~ 215 (223)
T cd00418 139 VFAHFGRLNNEDGTKLSKRKLKKLVEEGIVEGWDDPRLPTLRGLRRRGYLPEALRNFIALLGWSKSDATFDWEKLEA 215 (223)
T ss_pred EEEEECCEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEECHHHHHH
T ss_conf 28986207658887140200021045577678878871039999986998999999999958998787466999999
No 119
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=88.74 E-value=0.36 Score=26.99 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=45.3
Q ss_pred CCCCCCCCC-CCCC--HHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHCC-CCHHHH
Q ss_conf 530124554-3210--135677766530121133786852000014431000122554312456530233202-540344
Q gi|254780933|r 540 TSVLVTGFD-ILFF--WVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQ-YGADAL 615 (947)
Q Consensus 540 ~d~~~~G~D-i~r~--W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvidp~e~i~~-yGaDal 615 (947)
+|-+..|.. ++|| |+...- .+..+++-..+ ..| ....++++++++|+||||..|- ++..++.++ |=++|+
T Consensus 192 vDD~~m~it~virg~d~~~~t~-~~~~l~~~l~~--~~p--~~~H~pli~~~~g~kLSKR~~~-~~i~~~~~~GylPeAl 265 (467)
T PRK01406 192 VDDHDMGITHVIRGEDHLSNTP-RQILLYEALGW--EVP--VFAHLPLILGEDGKKLSKRHGA-TSVMQYRDMGYLPEAL 265 (467)
T ss_pred CCCCCCCCCEEECCCCCHHHHH-HHHHHHHHHCC--CCC--EEEEEECEECCCCCCCCCCCCC-CCHHHHHHCCCCHHHH
T ss_conf 5762368865403753588899-99999998389--997--1673011148999815566885-2199999859988999
Q ss_pred HHHHHCCC
Q ss_conf 45431233
Q gi|254780933|r 616 RFYFSIMA 623 (947)
Q Consensus 616 R~~l~~~~ 623 (947)
.=|++..+
T Consensus 266 lNyLa~LG 273 (467)
T PRK01406 266 LNYLARLG 273 (467)
T ss_pred HHHHHHHC
T ss_conf 99999847
No 120
>TIGR00467 lysS_arch lysyl-tRNA synthetase; InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and some eubacteria . Moreover in some eubacteria there is a gene X, which is similar to a part of lysyl-tRNA synthetase from class II. Lysyl-tRNA synthetase is duplicated in some species with, for example in E. coli, as a constitutive gene (lysS) and an induced one (lysU). A refined crystal structures shows that the active site of lysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding .; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=87.99 E-value=1.7 Score=22.08 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=45.4
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99808997284499998654378896779999987670898356778815454
Q gi|254780933|r 35 GSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAG 87 (947)
Q Consensus 35 ~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~G 87 (947)
....|.+..| -..+|.+|+|.++.....|.+.|-.+-.|-.+.+.+-||...
T Consensus 17 ~~~~~~~~~g-~~p~g~~~~g~~~~~~~~d~~~~~l~~~g~~~~~~~~~d~~d 68 (539)
T TIGR00467 17 PANLYTVASG-ITPSGHIHLGNLREVLTADAIARALLDSGGEAKLIYIADDYD 68 (539)
T ss_pred CCCCEEEECC-CCCCCCEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCH
T ss_conf 5321033204-676660330421456768888888750676147888524510
No 121
>PRK11637 hypothetical protein; Provisional
Probab=86.96 E-value=2.1 Score=21.37 Aligned_cols=21 Identities=24% Similarity=0.123 Sum_probs=11.5
Q ss_pred HHHHHCCCCCCHHHHHCCCCH
Q ss_conf 554312456530233202540
Q gi|254780933|r 592 KMSKSKGNVVDPIDVIDQYGA 612 (947)
Q Consensus 592 KMSKS~GNvidp~e~i~~yGa 612 (947)
.++.|.|-.|..-+.|-.-|.
T Consensus 356 ~l~v~~Gq~V~~Gq~Ig~vG~ 376 (404)
T PRK11637 356 SALVSVGAQVRAGQPIALVGS 376 (404)
T ss_pred CCCCCCCCEECCCCEEEEEEC
T ss_conf 588899799899996987326
No 122
>TIGR00255 TIGR00255 conserved hypothetical protein TIGR00255; InterPro: IPR005229 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures .
Probab=85.95 E-value=2.4 Score=21.01 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 244549999999889-----------------999999999999986607923678588899999999999999999999
Q gi|254780933|r 875 IGDFVDFVKERSRLK-----------------KSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISL 937 (947)
Q Consensus 875 l~~~iD~~~e~~rl~-----------------K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l 937 (947)
++.-+|+..|+.||. ++|+.+.+++++-...|+|+.- =..-++-.-+++..|+++
T Consensus 214 lA~R~Di~EEi~RL~~H~~~~~~iL~~g~avGr~LdF~~QElnRE~nTl~sKa~--------d~~it~~~~elK~~iEki 285 (293)
T TIGR00255 214 LAQRIDIAEEIDRLKSHVKEFYNILKKGEAVGRKLDFLMQELNRESNTLASKAI--------DADITNLVVELKVLIEKI 285 (293)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_conf 851057588999999999999998850786422688888888778888876765--------388999999998889988
Q ss_pred HHHHHHHH
Q ss_conf 99999986
Q gi|254780933|r 938 ENSLERIR 945 (947)
Q Consensus 938 ~~~l~~l~ 945 (947)
++|+..++
T Consensus 286 kEQiqN~E 293 (293)
T TIGR00255 286 KEQIQNIE 293 (293)
T ss_pred HHHHCCCC
T ss_conf 88630589
No 123
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.40 E-value=2.5 Score=20.83 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999
Q gi|254780933|r 918 SILQAEKERFSKVEKKRISLE 938 (947)
Q Consensus 918 ~vv~~er~kl~~~~~~i~~l~ 938 (947)
.++.....+.+....+...|+
T Consensus 197 ~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 197 ALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998987988688899899
No 124
>KOG0994 consensus
Probab=84.18 E-value=2.8 Score=20.45 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=8.5
Q ss_pred CCCCCCCHH----HHHHHHHHHC
Q ss_conf 345677448----9999999743
Q gi|254780933|r 747 CKLLHPIIP----FVTEDLYSHV 765 (947)
Q Consensus 747 l~ll~P~~P----fitEeiw~~l 765 (947)
|.|--|..| ++|++|=..+
T Consensus 1502 L~l~lp~tpeqi~~L~~~I~e~v 1524 (1758)
T KOG0994 1502 LALELPLTPEQIQQLTGEIQERV 1524 (1758)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 85327899899999999999999
No 125
>KOG2623 consensus
Probab=82.54 E-value=0.44 Score=26.34 Aligned_cols=61 Identities=21% Similarity=0.163 Sum_probs=38.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCHHH
Q ss_conf 55530124554321013567776653012113378685200001443100012255431245653023
Q gi|254780933|r 538 YPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPID 605 (947)
Q Consensus 538 ~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvidp~e 605 (947)
|-+.+-++|.||.-+ |+.++-+.++.......+| =++-.++.+..|.|.-||-||.|+...
T Consensus 226 ~g~~~QlGGsDQwGN-----itaG~dlI~ki~~~~~~vf--GlT~PLlTsstG~KlGKSaGnAvWLdp 286 (467)
T KOG2623 226 YGCRFQLGGSDQWGN-----ITAGTDLIRKIMPIQAFVF--GLTFPLLTSSTGAKLGKSAGNAVWLDP 286 (467)
T ss_pred CCEEEEECCCCCCCC-----CCHHHHHHHHHCCCCCCEE--EEEEEEEECCCCHHHCCCCCCEEEECC
T ss_conf 485698516432366-----2207899998520313400--356655765751132347786288467
No 126
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=81.87 E-value=3.4 Score=19.83 Aligned_cols=10 Identities=20% Similarity=0.249 Sum_probs=4.7
Q ss_pred CCCCCCCCEE
Q ss_conf 2354563102
Q gi|254780933|r 445 RQIWWGHQIP 454 (947)
Q Consensus 445 Rqr~WG~pIP 454 (947)
...-+|.|.|
T Consensus 127 ~~~~~~eP~~ 136 (474)
T PRK13729 127 PVTATGEPVP 136 (474)
T ss_pred CCCCCCCCCC
T ss_conf 1346889888
No 127
>pfam06447 consensus
Probab=79.57 E-value=4 Score=19.30 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=7.2
Q ss_pred CCHHHHHHHHHH
Q ss_conf 001368898647
Q gi|254780933|r 710 DELCDWYVEFIK 721 (947)
Q Consensus 710 ~~~~~~Yie~~K 721 (947)
+.++|+||++..
T Consensus 371 ~~ladyyik~Ae 382 (407)
T pfam06447 371 ERLSDYYIKRAE 382 (407)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999998
No 128
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=79.47 E-value=1.8 Score=21.83 Aligned_cols=53 Identities=25% Similarity=0.224 Sum_probs=25.9
Q ss_pred CCCCCCCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 0124554321-0135677766530121133786852000014431000122554312456
Q gi|254780933|r 542 VLVTGFDILF-FWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNV 600 (947)
Q Consensus 542 ~~~~G~Di~r-~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNv 600 (947)
+++.|.||-- |-++|.++--. .. ...-..| ..+.|-|+-.-+|.|||-|.+|.
T Consensus 208 LiP~giDQDP~fRltRDiA~r~-~~---~lg~~kP--a~ih~~flpgL~G~KMSsS~p~s 261 (369)
T PRK12285 208 VVPVGIDQDPHIRLTRDIAERM-RI---SLGFIKP--ASTYHKFMTGLTGGKMSSSKPES 261 (369)
T ss_pred EEECCCCCCHHHHHHHHHHHHH-HH---CCCCCCC--HHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 6540345446889999888874-01---1488872--77751145677889876899985
No 129
>PRK06798 fliD flagellar capping protein; Validated
Probab=76.02 E-value=5 Score=18.60 Aligned_cols=60 Identities=12% Similarity=0.252 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 445499999998899999999999999866079236785888999999999999999999999999998619
Q gi|254780933|r 876 GDFVDFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIRML 947 (947)
Q Consensus 876 ~~~iD~~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l~~l 947 (947)
.|+|+.. ..-|+++++.++++++.++.++. .+.+.-+++...++..+.+++.++.+|++|
T Consensus 374 ~G~i~~r--~~sl~~~i~~l~~q~~~l~~r~~----------~~~~r~~~Qf~ald~~~a~Lnsq~~~l~sm 433 (440)
T PRK06798 374 EGIIGER--SKSIDSRVSKLDKKIKDIDTQNK----------QKQDEIVDKYQKLESTLAALDSQLKTIKAM 433 (440)
T ss_pred CCEEEEH--HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9602207--77899999999999999999999----------999999999999999999999999999998
No 130
>pfam11559 ADIP Afadin- and alpha -actinin-Binding. This family is found in mammals where it is localized at cell-cell adherens junctions, and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins localized at Cell-Cell Adherens Junctions.
Probab=72.14 E-value=6.2 Score=17.94 Aligned_cols=64 Identities=16% Similarity=0.283 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999988999999999999998660792367858889999999999999999999999999986
Q gi|254780933|r 882 VKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIR 945 (947)
Q Consensus 882 ~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l~ 945 (947)
+.+..++++.+.+++..++.++..++....-.++-..-+.....++....+++.++...+...+
T Consensus 65 ~~d~~~l~~~i~rL~~~~~~~~re~~~~~~~~~~l~~~l~~~~~~~k~~keelqR~k~~~qq~~ 128 (151)
T pfam11559 65 EADIERLQNTIERLKTQLEDLERELALLQEKERQLEAKLKTLEQKLKNEKEEVQRLKNIIQQRK 128 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7369999999999999999999899899999999999999999999999999999998999999
No 131
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=71.35 E-value=6.4 Score=17.82 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=3.3
Q ss_pred HHHHHHHHHC
Q ss_conf 9999987670
Q gi|254780933|r 63 QDIMIRFERM 72 (947)
Q Consensus 63 ~Di~~Ry~rm 72 (947)
.++-.|+..+
T Consensus 10 ~~l~~rl~~l 19 (367)
T PRK00578 10 KDLDERLENI 19 (367)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 132
>TIGR00233 trpS tryptophanyl-tRNA synthetase; InterPro: IPR002306 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Tryptophanyl-tRNA synthetase (6.1.1.2 from EC) is an alpha2 dimer that belongs to class Ib. The crystal structure of tryptophanyl-tRNA synthetase is known .; GO: 0000166 nucleotide binding, 0004830 tryptophan-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006436 tryptophanyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=70.99 E-value=4 Score=19.29 Aligned_cols=55 Identities=24% Similarity=0.216 Sum_probs=29.2
Q ss_pred CCHHH--HHHHHHCCC---CCCHHHHHCCCCHHHHHHHHHCCCCCCC--CCCCCCCCCCCCHHHHH
Q ss_conf 00012--255431245---6530233202540344454312335567--75434110111000012
Q gi|254780933|r 586 RDKNG--QKMSKSKGN---VVDPIDVIDQYGADALRFYFSIMAVQGR--DINLDLERIAGYRNFIT 644 (947)
Q Consensus 586 ld~~G--~KMSKS~GN---vidp~e~i~~yGaDalR~~l~~~~~~~~--D~~fs~~~i~~~r~f~n 644 (947)
.+-+| +|||||.=| +|-..|==+.-.-=+-|.+ -..++ .+.++....-|+.|.++
T Consensus 215 ~gl~~P~kKMSkS~p~~~~~IfL~D~p~~~~kKI~~~~----tds~~P~~~~~~~~~~pGv~~~~~ 276 (366)
T TIGR00233 215 MGLQGPKKKMSKSDPNQNSAIFLTDTPKQIKKKIKKAA----TDSGRPDVTLFEHREKPGVPNLLV 276 (366)
T ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHC----CCCCCCCHHHHHHCCCCCCCCHHH
T ss_conf 68787853555567888820207989899999977520----484567111320013789862577
No 133
>pfam07106 TBPIP Tat binding protein 1(TBP-1)-interacting protein (TBPIP). This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation.
Probab=69.90 E-value=6.9 Score=17.60 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998899999999999999
Q gi|254780933|r 881 FVKERSRLKKSLEKVLDELSSI 902 (947)
Q Consensus 881 ~~~e~~rl~K~l~~l~~~i~~~ 902 (947)
+..++..|.+++..++..+..+
T Consensus 114 l~~~i~~L~~e~~~l~~kL~~l 135 (169)
T pfam07106 114 LQEEIQELKKEVREIEEKLESL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999998
No 134
>pfam02403 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain. This domain is found associated with the Pfam tRNA synthetase class II domain (pfam00587) and represents the N-terminal domain of seryl-tRNA synthetase.
Probab=69.37 E-value=7 Score=17.53 Aligned_cols=67 Identities=18% Similarity=0.333 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 24454999999988999999999999998660792367858889999999999999999999999999986
Q gi|254780933|r 875 IGDFVDFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIR 945 (947)
Q Consensus 875 l~~~iD~~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l~ 945 (947)
+..+++.+.++..+..+++.++.+...+.+.++... +..++ .+.-+++..++.+++..++..+..++
T Consensus 28 ~~~i~~ld~~~r~~~~~~e~L~~~~N~~sk~ig~~~---~~~~~-~~~l~~~~~~lk~~i~~le~~~~~~e 94 (108)
T pfam02403 28 VDELLELDEERRELQVELEELQAERNELSKEIGKAK---KKKED-AEALIAEVKELKDELKALEAELRELE 94 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999859899999987---57741-68899999999999999999999999
No 135
>KOG2911 consensus
Probab=67.97 E-value=7.5 Score=17.33 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=4.0
Q ss_pred HHHHHHCCCCC
Q ss_conf 44543123355
Q gi|254780933|r 615 LRFYFSIMAVQ 625 (947)
Q Consensus 615 lR~~l~~~~~~ 625 (947)
.-+.++..+..
T Consensus 191 ~~l~l~~l~~~ 201 (439)
T KOG2911 191 KDLVLCWLAYQ 201 (439)
T ss_pred HHHHHHHHHHH
T ss_conf 99999998753
No 136
>KOG3990 consensus
Probab=67.52 E-value=7.6 Score=17.27 Aligned_cols=23 Identities=17% Similarity=0.253 Sum_probs=13.8
Q ss_pred CCCCCCCCCCCCEEEEECCCCCEEEC
Q ss_conf 23212354563102698389988765
Q gi|254780933|r 441 WCISRQIWWGHQIPVWYSPDGKLFVE 466 (947)
Q Consensus 441 W~ISRqr~WG~pIPvw~~~~~~~~v~ 466 (947)
||----|-+|+|-| |..|+++.+
T Consensus 59 kCah~~~kfG~P~p---C~~CkiiaA 81 (305)
T KOG3990 59 KCAHNVRKFGTPKP---CQYCKIIAA 81 (305)
T ss_pred HHHHHHHHCCCCCC---CHHHHHHHH
T ss_conf 99999985289870---101034565
No 137
>KOG2145 consensus
Probab=67.42 E-value=3 Score=20.24 Aligned_cols=11 Identities=45% Similarity=0.371 Sum_probs=8.1
Q ss_pred HHHHHHHCCCC
Q ss_conf 22554312456
Q gi|254780933|r 590 GQKMSKSKGNV 600 (947)
Q Consensus 590 G~KMSKS~GNv 600 (947)
..|||-|.-|.
T Consensus 276 ~~KMSASdpns 286 (397)
T KOG2145 276 QTKMSASDPNS 286 (397)
T ss_pred CCCCCCCCCCC
T ss_conf 44555679974
No 138
>pfam03962 Mnd1 Mnd1 family. This family of proteins includes MND1 from S. cerevisiae. The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair.
Probab=66.77 E-value=7.9 Score=17.17 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999889999999999999986607923678588899999999999999999999999999861
Q gi|254780933|r 884 ERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIRM 946 (947)
Q Consensus 884 e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l~~ 946 (947)
++..+-.++..++.++..+...|. .|-.. -++.|++-+.....+.+..+.-...|-.|++
T Consensus 104 er~~ll~~l~~l~~~~~~L~~el~--~~~~~-Dp~~i~~~~~~~~~~~~aanrWTDNI~~l~~ 163 (188)
T pfam03962 104 ERTELLEELKQLEKELKKLKAELE--KYEKN-DPERIEKLKEETKVAKEAANRWTDNIFSLES 163 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 699999999999999999999999--98836-9999999999999999999998831999999
No 139
>pfam09755 DUF2046 Uncharacterized conserved protein H4 (DUF2046). This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=65.76 E-value=8.2 Score=17.03 Aligned_cols=24 Identities=8% Similarity=0.252 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999889999999999999986
Q gi|254780933|r 881 FVKERSRLKKSLEKVLDELSSIKK 904 (947)
Q Consensus 881 ~~~e~~rl~K~l~~l~~~i~~~~~ 904 (947)
+...+..|..+..++..++...+.
T Consensus 225 l~~hi~~LR~Ev~rLr~ql~~~q~ 248 (308)
T pfam09755 225 IASHITSLRSEVRRLRQNLAKSEA 248 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999899
No 140
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=64.81 E-value=8.6 Score=16.91 Aligned_cols=50 Identities=8% Similarity=0.152 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999998660792367858889999999999999999999999999986
Q gi|254780933|r 888 LKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIR 945 (947)
Q Consensus 888 l~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l~ 945 (947)
.+++|+.+.++..+-.+.|++++.-. .-.+.--+++..|+++.+|+..++
T Consensus 241 vGRkLDFl~QE~nREaNTl~SKS~~~--------~it~~~vElK~~IEqmREQVQNiE 290 (290)
T COG1561 241 VGRKLDFLMQEFNREANTLGSKSNAA--------EITAAVVELKVLIEQMREQVQNIE 290 (290)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 10468999999857887662122369--------999999999999999999985579
No 141
>PRK09429 mepA penicillin-insensitive murein endopeptidase; Reviewed
Probab=64.78 E-value=2.2 Score=21.17 Aligned_cols=13 Identities=38% Similarity=0.915 Sum_probs=11.4
Q ss_pred CCCCCCCCCCEEE
Q ss_conf 2123545631026
Q gi|254780933|r 443 ISRQIWWGHQIPV 455 (947)
Q Consensus 443 ISRqr~WG~pIPv 455 (947)
.||+||||||.=|
T Consensus 59 ~sRnR~wGHP~lI 71 (270)
T PRK09429 59 LSRNRYWGHPDLI 71 (270)
T ss_pred CCCCCCCCCHHHH
T ss_conf 4457677874999
No 142
>pfam03411 Peptidase_M74 Penicillin-insensitive murein endopeptidase.
Probab=62.23 E-value=2.6 Score=20.66 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=11.2
Q ss_pred CCCCCCCCCCEEE
Q ss_conf 2123545631026
Q gi|254780933|r 443 ISRQIWWGHQIPV 455 (947)
Q Consensus 443 ISRqr~WG~pIPv 455 (947)
.||+||||+|.=|
T Consensus 29 ~sRnR~wGHP~lI 41 (240)
T pfam03411 29 TDRNRYFGHPDMI 41 (240)
T ss_pred CCCCCCCCCHHHH
T ss_conf 6566677887999
No 143
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=62.06 E-value=3.1 Score=20.10 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=21.4
Q ss_pred CEEECCCCCCCEE--CHHHHHHC-CCCCCCCCCCCCCC
Q ss_conf 2020442333201--01111000-12345553012455
Q gi|254780933|r 513 TWFSSALWPFASL--GWPEQTAE-LKTYYPTSVLVTGF 547 (947)
Q Consensus 513 tWfdSg~~p~~~l--~~p~~~~e-~~~~~P~d~~~~G~ 547 (947)
+||||+ ||+.- +-|.--+| |++-+|||||+-|-
T Consensus 204 VFLdSA--YY~s~~pniP~hI~dIFqnGlPADFRLiGA 239 (532)
T TIGR02902 204 VFLDSA--YYSSEDPNIPSHIRDIFQNGLPADFRLIGA 239 (532)
T ss_pred CHHHCC--CCCCCCCCCCHHHHHHHCCCCCCCEECCCC
T ss_conf 000012--358777865427899720678734012133
No 144
>KOG2185 consensus
Probab=60.70 E-value=10 Score=16.40 Aligned_cols=58 Identities=26% Similarity=0.283 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 549999999889999999999999986607923678588899999999999999999999999999861
Q gi|254780933|r 878 FVDFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIRM 946 (947)
Q Consensus 878 ~iD~~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l~~ 946 (947)
+++.+.|+.|++.++.+++.-+.+=.+ -..++++-..+|++...+++.|+++...|++
T Consensus 415 lv~~edeirrlkrdm~klkq~l~RN~g-----------d~v~s~~lqe~L~ev~~~Lasl~aqea~ls~ 472 (486)
T KOG2185 415 LVEYEDEIRRLKRDMLKLKQMLNRNKG-----------DLVVSEALQERLKEVRKALASLLAQEAALSN 472 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 778899999999999999999862453-----------1789999999999999999999999988768
No 145
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772 This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process.
Probab=60.46 E-value=4.9 Score=18.70 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=5.4
Q ss_pred CCCEEEEEEECCCHH
Q ss_conf 777465999649989
Q gi|254780933|r 817 LKAVVPLVFANIDAH 831 (947)
Q Consensus 817 ~k~~i~i~~~~~~~~ 831 (947)
||+-...........
T Consensus 437 PKAl~~ypf~~~~f~ 451 (506)
T TIGR02026 437 PKALLRYPFQKNKFK 451 (506)
T ss_pred CHHHHHCCCCCCCCC
T ss_conf 148874257899742
No 146
>KOG0977 consensus
Probab=60.28 E-value=10 Score=16.35 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCH
Q ss_conf 012345553012455432101
Q gi|254780933|r 533 ELKTYYPTSVLVTGFDILFFW 553 (947)
Q Consensus 533 e~~~~~P~d~~~~G~Di~r~W 553 (947)
++.+-||..+.+.+.-.+.-|
T Consensus 477 ~i~~~f~~~~~~~~g~~v~i~ 497 (546)
T KOG0977 477 EIVFKFPSGYVLKPGASVTIW 497 (546)
T ss_pred EEEEECCCCCEECCCCEEEEE
T ss_conf 589977877363388548885
No 147
>PRK11820 hypothetical protein; Provisional
Probab=58.87 E-value=11 Score=16.18 Aligned_cols=48 Identities=10% Similarity=0.163 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999866079236785888999999999999999999999999998
Q gi|254780933|r 889 KKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERI 944 (947)
Q Consensus 889 ~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l 944 (947)
+|+|+.+-+++.+--+.++++.- .. .-.+..-+.+.++++|.+|+..+
T Consensus 240 GkkLdFl~QEm~RE~NTigsK~~-----~~---~i~~~vv~~K~~lEkiREQvqNi 287 (288)
T PRK11820 240 GRRLDFLMQELNREANTLGSKSN-----DA---EITNAVVELKVLIEQMREQVQNI 287 (288)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCC-----CH---HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 86320999987589998888038-----69---99999999999999999998558
No 148
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=58.42 E-value=10 Score=16.37 Aligned_cols=15 Identities=20% Similarity=0.534 Sum_probs=9.7
Q ss_pred HCCCCCCCCCCCCCC
Q ss_conf 102232223566655
Q gi|254780933|r 376 DSYRHIVPHCERSGV 390 (947)
Q Consensus 376 ~~~~h~~p~c~R~~~ 390 (947)
.+....+-||||+|-
T Consensus 84 ~~~~~~~vyC~RGGm 98 (128)
T cd01520 84 ERDPKLLIYCARGGM 98 (128)
T ss_pred CCCCCEEEEEECCCH
T ss_conf 469988999825770
No 149
>KOG0250 consensus
Probab=58.32 E-value=11 Score=16.12 Aligned_cols=58 Identities=14% Similarity=0.239 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 988999999999999998660792367858----88999999999999999999999999998
Q gi|254780933|r 886 SRLKKSLEKVLDELSSIKKKLENNQFVEKA----PPSILQAEKERFSKVEKKRISLENSLERI 944 (947)
Q Consensus 886 ~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kA----P~~vv~~er~kl~~~~~~i~~l~~~l~~l 944 (947)
+.+.++++++..++...+.-+.+..=+..+ -+. -.++...+.-+.+.+..+.+.+.+.
T Consensus 867 ~eik~ei~rlk~~i~~~ee~~~~~~e~~~~~~~~~~~-~~k~~~~k~~~~e~L~~l~~~l~~R 928 (1074)
T KOG0250 867 AEIKREIKRLKRQIQMCEESLGELEELHRGLHEARKE-LKKEDELKVTLDELLKALGEALESR 928 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999988323299999999997466-5536789999999999999999879
No 150
>PRK12765 flagellar capping protein; Provisional
Probab=58.23 E-value=11 Score=16.11 Aligned_cols=56 Identities=13% Similarity=0.215 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999998899999999999999866079236785888999999999999999999999999998619
Q gi|254780933|r 882 VKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIRML 947 (947)
Q Consensus 882 ~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l~~l 947 (947)
..-..-|..+++.|++++.+.+.+|. ..-+.-++|...++..|++++.+...|++|
T Consensus 533 ~~~~~~l~~~~~~L~~~~~~~~~rl~----------~~~~~m~~qfa~~d~~ia~~~~~~s~l~~~ 588 (597)
T PRK12765 533 TKYDESLTNEIKSLTTSKESTQKLID----------TKYDTMANQWLQYESIIAKLEQQFSTLKNM 588 (597)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99887777888888878999999999----------999999999999999999998799999999
No 151
>COG3770 MepA Murein endopeptidase [Cell envelope biogenesis, outer membrane]
Probab=58.06 E-value=3.5 Score=19.78 Aligned_cols=13 Identities=38% Similarity=0.912 Sum_probs=9.5
Q ss_pred CCCCCCCCCCEEE
Q ss_conf 2123545631026
Q gi|254780933|r 443 ISRQIWWGHQIPV 455 (947)
Q Consensus 443 ISRqr~WG~pIPv 455 (947)
.||+||||||==|
T Consensus 68 ~~rnR~~GHP~mi 80 (284)
T COG3770 68 LSRNRYWGHPDMI 80 (284)
T ss_pred CCCCCCCCCHHHH
T ss_conf 3556556883899
No 152
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.90 E-value=11 Score=16.07 Aligned_cols=62 Identities=15% Similarity=0.254 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998899999999999999866079236785888999999999999999999999999998
Q gi|254780933|r 883 KERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERI 944 (947)
Q Consensus 883 ~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l 944 (947)
.-+.||+.+.+.+..+++-+=+-++.-+|-.||-..+|.--+.-.++.+++-+-|+..+..|
T Consensus 21 erIERlEeEk~~i~~dikdvy~eakg~GFDvKa~r~iirlrK~D~~er~EedAildlY~~aL 82 (85)
T COG3750 21 ERIERLEEEKKTIADDIKDVYAEAKGHGFDVKAVRTIIRLRKLDKAERQEEDAILDLYMDAL 82 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998889999999763786199999999999603888888889999999985
No 153
>pfam08340 DUF1732 Domain of unknown function (DUF1732). This domain of unknown function is found at the C-terminus of bacterial proteins, many of whom are hypothetical, including proteins of the YicC family.
Probab=57.24 E-value=11 Score=15.99 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4549999999889-----------------99999999999998660792367858889999999999999999999999
Q gi|254780933|r 877 DFVDFVKERSRLK-----------------KSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLEN 939 (947)
Q Consensus 877 ~~iD~~~e~~rl~-----------------K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~ 939 (947)
+-.|+..|+.||. |+|+.+-.++.+--+.++++. ... .-....-+.+.+++++.+
T Consensus 9 ~K~DI~EEi~Rl~sHl~~~~~~l~~~~~~GrkLdFl~QE~~RE~NTi~SKs-----~~~---~i~~~~v~~K~~iEkiRE 80 (86)
T pfam08340 9 DKADITEELDRLKSHLEQFRELLESGGPVGRKLDFLMQEMNREANTIGSKS-----NDL---EITQLVVELKVEIEKIRE 80 (86)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC-----CCH---HHHHHHHHHHHHHHHHHH
T ss_conf 981429999999999999999984699977204589999808999888711-----749---999999999999999999
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780933|r 940 SLERI 944 (947)
Q Consensus 940 ~l~~l 944 (947)
|+..+
T Consensus 81 QvqNi 85 (86)
T pfam08340 81 QVQNI 85 (86)
T ss_pred HHHCC
T ss_conf 99657
No 154
>pfam11853 DUF3373 Protein of unknown function (DUF3373). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=56.21 E-value=12 Score=15.88 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=8.9
Q ss_pred HHHCCEEECCCCEEC-CCHH
Q ss_conf 980836642798115-8867
Q gi|254780933|r 134 KRLGASCDWSRERFT-MDEG 152 (947)
Q Consensus 134 ~~lG~~~Dw~r~y~T-~d~~ 152 (947)
+.+|-++-|.-.|+| +|.-
T Consensus 60 ~~a~~~l~~~~DfRt~~D~l 79 (485)
T pfam11853 60 KSAGDRLTFSGDFRFRVDSL 79 (485)
T ss_pred HHCCCCEEEEEEEEEEEECC
T ss_conf 53036379800788887100
No 155
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase; InterPro: IPR011981 This enzyme catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. 4-hydroxyphenylacetate arises from the degradation of tyrosine. The substrate, 3,4-dihydroxyphenylacetate (homoprotocatechuate) arises from the action of a hydroxylase on 4-hydroxyphenylacetate. The aromatic ring is opened by this dioxygenase exo to the 3,4-diol resulting in 2-hydroxy-5-carboxymethylmuconate semialdehyde..
Probab=56.17 E-value=3.7 Score=19.60 Aligned_cols=10 Identities=40% Similarity=0.620 Sum_probs=4.4
Q ss_pred HCCCCHHHHH
Q ss_conf 2025403444
Q gi|254780933|r 607 IDQYGADALR 616 (947)
Q Consensus 607 i~~yGaDalR 616 (947)
||-|..|-++
T Consensus 267 IElYt~DY~t 276 (312)
T TIGR02295 267 IELYTGDYLT 276 (312)
T ss_pred EEEECCCCEE
T ss_conf 9998288225
No 156
>pfam04111 APG6 Autophagy protein Apg6. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway.
Probab=55.86 E-value=12 Score=15.84 Aligned_cols=12 Identities=33% Similarity=0.576 Sum_probs=5.6
Q ss_pred HHHHHCCCCCCH
Q ss_conf 554312456530
Q gi|254780933|r 592 KMSKSKGNVVDP 603 (947)
Q Consensus 592 KMSKS~GNvidp 603 (947)
+|++.+|+..|+
T Consensus 301 ~I~~dk~~i~d~ 312 (356)
T pfam04111 301 QMESEKGKINDV 312 (356)
T ss_pred ECCCCCCCCCCC
T ss_conf 104455665554
No 157
>KOG2144 consensus
Probab=54.95 E-value=3.9 Score=19.44 Aligned_cols=69 Identities=23% Similarity=0.236 Sum_probs=35.8
Q ss_pred CEECHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHH-HHHHHHHCCCC
Q ss_conf 2010111100012345553012455432101356777665301211337868520000144310001-22554312456
Q gi|254780933|r 523 ASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKN-GQKMSKSKGNV 600 (947)
Q Consensus 523 ~~l~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~-G~KMSKS~GNv 600 (947)
+++-||-....=+.+.-+|..-.|.||-.- .+++ --++ .... .. -+..++|.||=+-. |.|||+|--|.
T Consensus 161 s~llYP~MQalDe~~L~vD~qfgGvDQRKI---f~~A-~eyl-p~l~---yk-KrihLmnpMvPGL~q~~KMSsSd~~S 230 (360)
T KOG2144 161 SGLLYPGMQALDEFYLEVDAQFGGVDQRKI---FVLA-EEYL-PDLG---YK-KRIHLMNPMVPGLAQGEKMSSSDPLS 230 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHH---HHHH-HHHH-HHHC---CC-CCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 655400387766998730377548119999---9999-9861-5417---66-55232377785534457666678523
No 158
>pfam06009 Laminin_II Laminin Domain II. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure.
Probab=54.62 E-value=13 Score=15.70 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8999999999999999888980899777
Q gi|254780933|r 792 SIEEVNWIIDLISKVRSIRTEMNVPLKA 819 (947)
Q Consensus 792 ~~~~~~~~~~ii~~iR~~R~~~~i~~k~ 819 (947)
+-..++.+++.|...|..-+..+++.+-
T Consensus 90 ls~ni~~ik~~I~~AR~~An~Ikv~~~f 117 (140)
T pfam06009 90 LSRNISRIKELIAQARKAANSIKVSVSF 117 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_conf 9878999999999999998850021355
No 159
>pfam00509 Hemagglutinin Hemagglutinin. Hemagglutinin from influenza virus causes membrane fusion of the viral membrane with the host membrane. Fusion occurs after the host cell internalises the virus by endocytosis. The drop of pH causes release of a hydrophobic fusion peptide and a large conformational change leading to membrane fusion.
Probab=52.71 E-value=13 Score=15.49 Aligned_cols=39 Identities=13% Similarity=0.342 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHH
Q ss_conf 3331555677999999998889987531--001024577765
Q gi|254780933|r 668 DVKWIVNKWIIKRLATVINDVTVGMENH--RFNDVSAVLYRF 707 (947)
Q Consensus 668 ~~~~~~Drwils~l~~~i~~v~~~~e~~--~f~~a~~~i~~F 707 (947)
.....+|+ |-.+++++|+++.+.|+.. .|++.-..|..+
T Consensus 368 STQ~AId~-It~KlN~iiek~N~qf~~i~~EF~evE~rI~~l 408 (550)
T pfam00509 368 STQKAIDQ-ITGKLNSLIEKMNTQFEAIEKEFSELERRINNL 408 (550)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999998-877888899987767888777899999999999
No 160
>PRK10426 alpha-glucosidase; Provisional
Probab=52.50 E-value=13 Score=15.47 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=7.2
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 77448999999974
Q gi|254780933|r 751 HPIIPFVTEDLYSH 764 (947)
Q Consensus 751 ~P~~PfitEeiw~~ 764 (947)
.=++|++.+..++.
T Consensus 566 ~~L~PYi~~la~ea 579 (682)
T PRK10426 566 TALKPYLKELVAEA 579 (682)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 98899999999999
No 161
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=51.01 E-value=8.2 Score=17.03 Aligned_cols=13 Identities=0% Similarity=-0.176 Sum_probs=4.8
Q ss_pred CCCCCCCCCCEEE
Q ss_conf 2568888310188
Q gi|254780933|r 494 MIKDGNISDLLKR 506 (947)
Q Consensus 494 ~~~~~~~~~~~~r 506 (947)
...|..|+....+
T Consensus 245 GepC~~CGt~I~k 257 (273)
T COG0266 245 GEPCRRCGTPIEK 257 (273)
T ss_pred CCCCCCCCCEEEE
T ss_conf 9988745887679
No 162
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=50.62 E-value=5.8 Score=18.16 Aligned_cols=15 Identities=33% Similarity=0.487 Sum_probs=13.2
Q ss_pred EECCCEEEECCCCCC
Q ss_conf 313320220377678
Q gi|254780933|r 171 YRDKRIVNWDPSLKT 185 (947)
Q Consensus 171 y~~~~~v~w~p~~~T 185 (947)
|+...|..|||.|+-
T Consensus 9 y~~~~~~~WCpGCG~ 23 (286)
T PRK11866 9 YAVKRPPIWCPGCGN 23 (286)
T ss_pred CCCCCCCCCCCCCCC
T ss_conf 088999866899971
No 163
>pfam06428 Sec2p GDP/GTP exchange factor Sec2p. In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion.
Probab=50.51 E-value=14 Score=15.25 Aligned_cols=65 Identities=22% Similarity=0.278 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999988999999999999998660792--367858889------99999999999999999999999998619
Q gi|254780933|r 883 KERSRLKKSLEKVLDELSSIKKKLENN--QFVEKAPPS------ILQAEKERFSKVEKKRISLENSLERIRML 947 (947)
Q Consensus 883 ~e~~rl~K~l~~l~~~i~~~~~kL~N~--~Fv~kAP~~------vv~~er~kl~~~~~~i~~l~~~l~~l~~l 947 (947)
+.+...+++..+++.++..+...|=.+ +-|..|-.+ --++-++.+.+.+..+..++.+|+.||.+
T Consensus 8 ~~r~~aE~~~~~~~~E~e~Lta~LF~eAn~MV~~ar~e~~~~e~kn~qL~eqL~e~e~ll~slQ~QL~~LK~v 80 (101)
T pfam06428 8 KKRLRAEKEKKKLEQEVEDLTASLFDEANKMVADARKEREAVEIKNEKLEEQLKEKETLLDSLQAQLKELKQV 80 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899999999999989999999999999999999999999999988999999976998999999999999999
No 164
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.20 E-value=15 Score=15.11 Aligned_cols=13 Identities=0% Similarity=-0.191 Sum_probs=6.4
Q ss_pred CCCCCCEEEEECC
Q ss_conf 5456310269838
Q gi|254780933|r 447 IWWGHQIPVWYSP 459 (947)
Q Consensus 447 r~WG~pIPvw~~~ 459 (947)
|-=-+|+|.+-|.
T Consensus 216 ~~~q~pl~~~ec~ 228 (758)
T COG4694 216 RHNQTPLALLECN 228 (758)
T ss_pred CCCCCCCCEEEEC
T ss_conf 8798876414553
No 165
>TIGR02836 spore_IV_A stage IV sporulation protein A; InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis . A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. .
Probab=48.90 E-value=14 Score=15.33 Aligned_cols=95 Identities=20% Similarity=0.310 Sum_probs=51.0
Q ss_pred EEEECCCCHHCHHHHHHHHHCC-----HHHHHHCC---------------CEEEECCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 9982674010102444444100-----01231115---------------423320248657321000034212232032
Q gi|254780933|r 236 IVSTTRPETMFGDVAIAVHPDD-----YRYKELIG---------------KYATLPIVGRLIPIVSDVYPDPEFGDGAVK 295 (947)
Q Consensus 236 ~v~TtrPeTl~g~~a~~v~P~d-----~~y~~l~G---------------~~~~~Pl~~~~ipi~~~~~V~~~~GTG~V~ 295 (947)
.|-||-|--+| |.|+-||=++ -|..+.|| +.+..|=++.+||.-.+ +|-||==
T Consensus 67 timTTEPKFvP-n~Avei~in~~~k~~vRLVDcVGY~V~GA~GY~ee~kprMv~TPWYd~eIPF~EA----AEIGTrK-- 139 (492)
T TIGR02836 67 TIMTTEPKFVP-NEAVEININEGTKFKVRLVDCVGYIVKGALGYEEEDKPRMVSTPWYDEEIPFEEA----AEIGTRK-- 139 (492)
T ss_pred EEEECCCCCCC-CCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHH----HHCCCEE--
T ss_conf 02104878668-8518998648820789999862301578545002786401158888888872355----1237710--
Q ss_pred ECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 1247785565664304653111016777521366544455543465546555310015123344888998888764
Q gi|254780933|r 296 VTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNL 371 (947)
Q Consensus 296 ~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~a~~~ii~~L~~~g~ 371 (947)
+-..|. -+--+++.||++.. -.-.++-+|-+.+|+.||+-|.
T Consensus 140 -----------VI~dHS-TiG~lvTTDGsI~d----------------------I~RedYv~AEERVveELKe~~K 181 (492)
T TIGR02836 140 -----------VISDHS-TIGLLVTTDGSITD----------------------IPREDYVEAEERVVEELKELNK 181 (492)
T ss_pred -----------ECCCCC-EEEEEEECCCCCCC----------------------CCCCCCHHHHHHHHHHHHCCCC
T ss_conf -----------115775-07899711784034----------------------6731340033577677640799
No 166
>KOG0614 consensus
Probab=48.66 E-value=14 Score=15.27 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=16.4
Q ss_pred EEEEECCCCHHCHHHHHHHHH
Q ss_conf 999826740101024444441
Q gi|254780933|r 235 IIVSTTRPETMFGDVAIAVHP 255 (947)
Q Consensus 235 l~v~TtrPeTl~g~~a~~v~P 255 (947)
-++.|-.|+|+||-.|+..|-
T Consensus 213 ~ll~~m~~gtvFGELAILync 233 (732)
T KOG0614 213 KLLGKMGAGTVFGELAILYNC 233 (732)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 666314772145678998578
No 167
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=48.37 E-value=16 Score=15.02 Aligned_cols=53 Identities=15% Similarity=0.340 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999889999999999999986607923678588899999999999999999999999999861
Q gi|254780933|r 884 ERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIRM 946 (947)
Q Consensus 884 e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l~~ 946 (947)
....|++++..+.+++..++.||. ...+.-+++...++.-+++++.+-..|.+
T Consensus 408 ~~~~l~~~i~~l~~~i~~l~~rl~----------~~e~~~~~QFtame~~~~~mnsq~s~L~q 460 (463)
T PRK08032 408 ATDGVNKTLKKLTKQYNAVSDSID----------ATVARYKAQFTQLDKMMTSLNSTSSYLTQ 460 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 766799999999999999999999----------99999999999999999999989999998
No 168
>KOG2264 consensus
Probab=47.68 E-value=16 Score=14.95 Aligned_cols=14 Identities=36% Similarity=0.563 Sum_probs=10.7
Q ss_pred CHHHHHHHHHCC-CC
Q ss_conf 001225543124-56
Q gi|254780933|r 587 DKNGQKMSKSKG-NV 600 (947)
Q Consensus 587 d~~G~KMSKS~G-Nv 600 (947)
+.-|+..||++| |+
T Consensus 632 gGsGkEF~~aLGGN~ 646 (907)
T KOG2264 632 GGSGKEFSKALGGNR 646 (907)
T ss_pred CCCHHHHHHHHCCCC
T ss_conf 886678899866997
No 169
>PRK12338 hypothetical protein; Provisional
Probab=47.49 E-value=16 Score=14.93 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 111232123545631
Q gi|254780933|r 438 IQPWCISRQIWWGHQ 452 (947)
Q Consensus 438 ~~DW~ISRqr~WG~p 452 (947)
++||.|+|-.-.|+|
T Consensus 172 Iqd~L~~~Adeh~iP 186 (320)
T PRK12338 172 IHDFLVSQADEHGIP 186 (320)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999998416761997
No 170
>KOG2713 consensus
Probab=47.11 E-value=10 Score=16.38 Aligned_cols=12 Identities=50% Similarity=0.418 Sum_probs=9.4
Q ss_pred HHHHHHHCCCCC
Q ss_conf 225543124565
Q gi|254780933|r 590 GQKMSKSKGNVV 601 (947)
Q Consensus 590 G~KMSKS~GNvi 601 (947)
-+|||||-+|--
T Consensus 209 ekKMSKSd~n~~ 220 (347)
T KOG2713 209 EKKMSKSDPNPK 220 (347)
T ss_pred HHHCCCCCCCCC
T ss_conf 554145799975
No 171
>pfam04568 IATP Mitochondrial ATPase inhibitor, IATP. ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP. The minimum inhibitory region for bovine inhibitor is from residues 39 to 72. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH, the inhibitor forms a dimer via antiparallel coiled coil interactions between the C terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity.
Probab=47.09 E-value=16 Score=14.89 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999986
Q gi|254780933|r 919 ILQAEKERFSKVEKKRISLENSLERIR 945 (947)
Q Consensus 919 vv~~er~kl~~~~~~i~~l~~~l~~l~ 945 (947)
+.++|+++|..+.++++.-++.|+.|+
T Consensus 60 ~rq~ekEqL~~Lk~~l~~q~~~i~~le 86 (90)
T pfam04568 60 FRQKEKEQLAALKEKLEEHKKEIEELE 86 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999998
No 172
>pfam01927 DUF82 Protein of unknown function DUF82. This prokaryotic protein family has no known function. The protein contains four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=46.60 E-value=8 Score=17.14 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=16.4
Q ss_pred HHHHHHCCCCCCCCCCCCCC
Q ss_conf 99876708983567788154
Q gi|254780933|r 66 MIRFERMRGKNVLWQPGTDH 85 (947)
Q Consensus 66 ~~Ry~rm~G~~Vl~~~G~D~ 85 (947)
+|||-||.||++.+..+.+-
T Consensus 12 LAr~LR~lG~Dt~~~~~~~D 31 (146)
T pfam01927 12 LARWLRLLGYDTLYDNDFED 31 (146)
T ss_pred HHHHHHHCCCCEEECCCCCH
T ss_conf 99999986988701599985
No 173
>pfam11376 DUF3179 Protein of unknown function (DUF3179). This family of proteins has no known function.
Probab=46.24 E-value=16 Score=15.01 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=21.7
Q ss_pred HHHCCCEEEECCCCCCCCCCCCCCCC-----CCCCCCEEEECCCCCHHHH
Q ss_conf 31115423320248657321000034-----2122320321247785565
Q gi|254780933|r 261 KELIGKYATLPIVGRLIPIVSDVYPD-----PEFGDGAVKVTPAHDFNDF 305 (947)
Q Consensus 261 ~~l~G~~~~~Pl~~~~ipi~~~~~V~-----~~~GTG~V~~~Pah~~~Dy 305 (947)
+++.|.-..=|+.|+++..++....+ ...-.|.|++.|..-.++|
T Consensus 108 ~Q~~g~ai~Gpl~G~~L~~~p~~~~tw~~~~~~~P~~~Vl~~~tg~~R~Y 157 (261)
T pfam11376 108 QQATGEAIVGPLTGTQLEQLPVWLTTWGKWKERYPDGLVLSEPTGYRRNY 157 (261)
T ss_pred HHHCCEEEECCCCCCCCCCCEEEEEEHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 33033571058899782123238974999998789955972688766555
No 174
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=45.82 E-value=6.5 Score=17.80 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=33.5
Q ss_pred CCCCCHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 68520000144310001225543124565302332025403444543123355677543
Q gi|254780933|r 573 IEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINL 631 (947)
Q Consensus 573 ~~Pfk~v~~hG~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~f 631 (947)
..||..-+.|||..-+-.-+|+.+..-+-...-.+ .||.|-+||- +--+.|..++-
T Consensus 51 ~~pfg~tIAHGfltLSl~~~~~~~~~~~~~~~~~v-NYG~dkvRF~--~PV~vGs~vR~ 106 (149)
T cd03450 51 AEPFGGTIAHGFLTLSLLPALTPQLFRVEGVKMGV-NYGLDKVRFP--APVPVGSRVRG 106 (149)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE-ECCCCCEEEC--CCCCCCCEEEE
T ss_conf 39888734650669999998875266767843333-0033526706--87567999999
No 175
>pfam09728 Taxilin Myosin-like coiled-coil protein. Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca2+-dependent exocytosis in neuroendocrine cells. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localizes to the nucleus in osteoblasts and dimerizes with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription.
Probab=45.71 E-value=17 Score=14.74 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998899999999999999866079236785888999999---9999999999999999999986
Q gi|254780933|r 880 DFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAE---KERFSKVEKKRISLENSLERIR 945 (947)
Q Consensus 880 D~~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~e---r~kl~~~~~~i~~l~~~l~~l~ 945 (947)
.+..|..+++|++.+++++...+..|+.+.+.. =.+.++.- ...+..+..++.+|+.....|+
T Consensus 241 ~fk~Emekm~kk~kklEkE~~~lk~k~E~~n~~---l~~m~eEr~~~~~e~~~~~~q~e~Le~Lcr~lq 306 (309)
T pfam09728 241 TFKQEMEKMSKKIKKLEKENLAWKRKHEKSNKA---LLEMAEERQKRKKEIEKLKKKIEKLEKLCRALQ 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999899999999988799---999999999999999999999999999999976
No 176
>TIGR00354 polC DNA polymerase II, large subunit DP2; InterPro: IPR004475 This family represents the large subunit, DP2, of a two subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0006308 DNA catabolic process.
Probab=45.67 E-value=12 Score=15.76 Aligned_cols=11 Identities=36% Similarity=0.600 Sum_probs=5.6
Q ss_pred HHHHHHHHHHC
Q ss_conf 89864765305
Q gi|254780933|r 716 YVEFIKSILNQ 726 (947)
Q Consensus 716 Yie~~K~~l~~ 726 (947)
|+|-+++||.+
T Consensus 1003 ~~e~VedRLgk 1013 (1173)
T TIGR00354 1003 YVEKVEDRLGK 1013 (1173)
T ss_pred HHHHHHHHCCC
T ss_conf 88888865488
No 177
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=45.30 E-value=17 Score=14.70 Aligned_cols=56 Identities=9% Similarity=0.090 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHC
Q ss_conf 999999999999866079236785888999999999999999--------99999999999861
Q gi|254780933|r 891 SLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEK--------KRISLENSLERIRM 946 (947)
Q Consensus 891 ~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~--------~i~~l~~~l~~l~~ 946 (947)
....++.-+=..++||+.++|.+++.++-.++-+.++.+.+. ..+.+++.++.|++
T Consensus 540 akN~lE~yiy~~r~kl~d~~~~~~~~~~ek~~i~~~l~e~~~WL~~g~da~k~~y~~kl~eL~~ 603 (657)
T PTZ00009 540 AKNGLENYAYSMKNTLSDPNVKGKLDDAEKDTANKAIDEALEWLESNQEASKEEYEHKQKELES 603 (657)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 8878999999998663560011018999999999999999999755997558999999999998
No 178
>PRK07737 fliD flagellar capping protein; Validated
Probab=45.12 E-value=17 Score=14.68 Aligned_cols=50 Identities=18% Similarity=0.245 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 889999999999999986607923678588899999999999999999999999999861
Q gi|254780933|r 887 RLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIRM 946 (947)
Q Consensus 887 rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l~~ 946 (947)
-|++++..+++++..++.+|. .+.+.-+++...++.-+++++.+-..|.+
T Consensus 446 ~l~~~i~~~~~~i~~l~~rl~----------~~e~rl~~QFtame~~~s~lns~~s~L~~ 495 (502)
T PRK07737 446 AIGKNLNSIETRISRMQDRLK----------QIEDRYYKKFSAMEKAIQKANEQSMYLMQ 495 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 788899999999999999999----------99999999999999999999989999999
No 179
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=44.62 E-value=18 Score=14.62 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHC-CCEEECCCEEEE
Q ss_conf 9999999999988-943313320220
Q gi|254780933|r 155 NAVRNAFVVLYKD-GLIYRDKRIVNW 179 (947)
Q Consensus 155 ~~v~~~F~~L~~~-gliy~~~~~v~w 179 (947)
--+|..|.-|+++ |+|-+..+|--+
T Consensus 138 GGQwdM~v~l~eKYGvVpK~~ypes~ 163 (444)
T COG3579 138 GGQWDMFVSLFEKYGVVPKSVYPESF 163 (444)
T ss_pred CCHHHHHHHHHHHHCCCCHHHCCCCC
T ss_conf 83478999999984877566464101
No 180
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.00 E-value=18 Score=14.56 Aligned_cols=33 Identities=36% Similarity=0.561 Sum_probs=18.8
Q ss_pred CCCCEEEEC--CCCCHHHHHHHHHCCCCCCCEECC
Q ss_conf 223203212--477855656643046531110167
Q gi|254780933|r 289 FGDGAVKVT--PAHDFNDFEIAKRHGLGFINILTP 321 (947)
Q Consensus 289 ~GTG~V~~~--Pah~~~Dy~~~~~~~l~~~~~~~~ 321 (947)
.||-+|-+| |+|-.-=-+++++||+++-..+++
T Consensus 78 ~~tkLVQVTg~~g~~~sL~~lArr~G~~~~~~~~P 112 (652)
T COG2433 78 EGTKLVQVTGRPGEQESLWELARRHGIRVNGKLNP 112 (652)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCH
T ss_conf 98608998389887232899999849877998885
No 181
>pfam09726 Macoilin Transmembrane protein. This entry is a highly conserved protein present in eukaryotes.
Probab=43.58 E-value=18 Score=14.51 Aligned_cols=14 Identities=14% Similarity=0.499 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999998889808
Q gi|254780933|r 801 DLISKVRSIRTEMN 814 (947)
Q Consensus 801 ~ii~~iR~~R~~~~ 814 (947)
++=++++.+|.+.+
T Consensus 537 qLE~E~kkLr~eLk 550 (680)
T pfam09726 537 DLEMEIKKLEHDLK 550 (680)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999998
No 182
>pfam05809 consensus
Probab=43.42 E-value=18 Score=14.50 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=12.5
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 145676403456774489999999743566
Q gi|254780933|r 739 FSYVLYNVCKLLHPIIPFVTEDLYSHVSPQ 768 (947)
Q Consensus 739 l~~vl~~~l~ll~P~~PfitEeiw~~l~~~ 768 (947)
+...++.....--||.|+- +-|.+.++
T Consensus 100 l~s~Feg~vVaKLPF~Pi~---~~~~lTHr 126 (172)
T pfam05809 100 LNSIFEGRVVAKLPFVPIG---IIQGLSHR 126 (172)
T ss_pred HHHHCCCCEEEEECCCCHH---HHHHHHHC
T ss_conf 9987089558970784516---88744116
No 183
>KOG1850 consensus
Probab=43.03 E-value=19 Score=14.46 Aligned_cols=59 Identities=24% Similarity=0.373 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999988999999999999998660792367858889999999------999999999999999999986
Q gi|254780933|r 881 FVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEK------ERFSKVEKKRISLENSLERIR 945 (947)
Q Consensus 881 ~~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er------~kl~~~~~~i~~l~~~l~~l~ 945 (947)
+..|..|++|++.+++++--.-.+|-.|.| +.|++-.. +..+.++.+|..|+.....|+
T Consensus 248 fK~E~ekmtKk~kklEKE~l~wr~K~e~aN------k~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq 312 (391)
T KOG1850 248 FKQEMEKMTKKIKKLEKETLIWRTKWENAN------KAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQ 312 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999998888888776421------89999998868888888999999999999999998
No 184
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=43.01 E-value=19 Score=14.45 Aligned_cols=52 Identities=15% Similarity=0.309 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99889999999999999986607923678588899999999999999999999999999861
Q gi|254780933|r 885 RSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIRM 946 (947)
Q Consensus 885 ~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l~~ 946 (947)
..+|++++..+.++|..++++|+ ...++-+.+...+...+.+++.+...|++
T Consensus 424 ~~~l~~~i~~l~~~i~~~~~rl~----------~~e~~~~~qf~~m~~~~~~m~sq~~~L~q 475 (483)
T COG1345 424 TDSLNKQIKSLDKDIKSLDKRLE----------AAEERYKTQFNTLDDMMTQMNSQSSYLTQ 475 (483)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34176789889989999998899----------99999999999999999999999999999
No 185
>TIGR02039 CysD sulfate adenylyltransferase, small subunit; InterPro: IPR011784 Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through reaction of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS). In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids. Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules.; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0019421 sulfate reduction APS pathway.
Probab=42.98 E-value=16 Score=14.90 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=25.0
Q ss_pred HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 001234555301245543210135677766530121133786852000
Q gi|254780933|r 532 AELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIV 579 (947)
Q Consensus 532 ~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v 579 (947)
.+|++ |+=++..|+| +.+|+|++. +...+|..||.-+
T Consensus 17 a~F~~--PV~LyS~GKD-------S~VlLHLA~--KaF~Pg~~PFplL 53 (295)
T TIGR02039 17 AEFER--PVLLYSIGKD-------SSVLLHLAR--KAFYPGRLPFPLL 53 (295)
T ss_pred HCCCC--CEEEEECCCH-------HHHHHHHHH--HCCCCCCCCCCEE
T ss_conf 30379--7689865734-------799999876--4058888797357
No 186
>pfam05537 DUF759 Borrelia burgdorferi protein of unknown function (DUF759). This family consists of several uncharacterized proteins from the Lyme disease spirochete Borrelia burgdorferi.
Probab=42.66 E-value=19 Score=14.42 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999998083
Q gi|254780933|r 116 EKVWEWKKESGGSILSQLKRLGA 138 (947)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~lG~ 138 (947)
+..++-+++|.-++..-+..-|.
T Consensus 65 EsLrErVEKYRLtqTKKLmKQGM 87 (439)
T pfam05537 65 ESLRERVEKYRLTQTKKLIKQGM 87 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88999999996899999998133
No 187
>PRK11020 hypothetical protein; Provisional
Probab=42.16 E-value=19 Score=14.36 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999988999999999999998
Q gi|254780933|r 883 KERSRLKKSLEKVLDELSSIK 903 (947)
Q Consensus 883 ~e~~rl~K~l~~l~~~i~~~~ 903 (947)
.|+.+|+..|++.+-.+..+.
T Consensus 5 ~Elq~L~drLD~~r~Klaaa~ 25 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAAAS 25 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999889999999889999
No 188
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=40.77 E-value=20 Score=14.22 Aligned_cols=106 Identities=15% Similarity=0.240 Sum_probs=57.9
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHH
Q ss_conf 8997284499998654378896779999987670898356778-815454089999999976745998777798999999
Q gi|254780933|r 39 FCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQP-GTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEK 117 (947)
Q Consensus 39 f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~-G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~ 117 (947)
|.|.. |..+|.+-..-..+. +.+ +.+-.+.+|-+|+.-. ||+..+-+. . + .+. -.|.+|++.
T Consensus 28 yaFa~--~~~dG~l~~~~~~~~-~~~-~~~~a~~~~~kvllsiGG~~~~~f~~-~-~---------~~~--~~R~~Fi~~ 90 (253)
T cd06545 28 LAFAN--PDANGTLNANPVRSE-LNS-VVNAAHAHNVKILISLAGGSPPEFTA-A-L---------NDP--AKRKALVDK 90 (253)
T ss_pred EEEEE--ECCCCEEEECCCHHH-HHH-HHHHHHCCCCEEEEEEECCCCCCHHH-H-H---------CCH--HHHHHHHHH
T ss_conf 97588--669983983686889-999-99986457963999994798983165-6-4---------599--999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCE
Q ss_conf 99999999999999999808366427981158867999999999999988943
Q gi|254780933|r 118 VWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLI 170 (947)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gli 170 (947)
|.++..++ .-=|+-+||+.+-.+ -.+|..+++..-..|...|++
T Consensus 91 ~~~~~~~~--------~~DGvDiDwEyP~~~-~~n~~~~l~eLr~~l~~~g~l 134 (253)
T cd06545 91 IINYVVSY--------NLDGIDVDLEGPDVT-FGDYLVFIRALYAALKKEGKL 134 (253)
T ss_pred HHHHHHHC--------CCCCEEEECCCCCCC-HHHHHHHHHHHHHHHCCCCCE
T ss_conf 99999980--------997289806688887-779999999999753435908
No 189
>pfam04918 DltD_M DltD central region. DltD is and integral membrane protein involved in the biosynthesis of D-alanyl-lipoteichoic acid. This is important in controlling the net ionic charge in lipoteichoic acid (LTA). This family is found in bacteria of the Bacillus/Clostridium group. DltD binds Dcp and ligates it with D-alanine. DltD does not ligate acyl carrier protein (ACP) with D-alanine. It also has thioesterase activity for mischarged D-alanyl-acyl carrier protein (ACP). DltD is thought to be responsible for discriminating between Dcp involved in the D-alanylation of LTA, and ACP involved in fatty acid biosynthesis. This family consists of the central region of DltD.
Probab=40.58 E-value=12 Score=15.80 Aligned_cols=16 Identities=25% Similarity=0.518 Sum_probs=11.5
Q ss_pred CCCCEEEEEEHHHEEC
Q ss_conf 6553244431222121
Q gi|254780933|r 388 SGVTIEPCITEQWYLD 403 (947)
Q Consensus 388 ~~~~i~~~~~~QWfi~ 403 (947)
-|.-+++++++|||..
T Consensus 23 k~kK~vfiiSpQWF~k 38 (163)
T pfam04918 23 KGKKAVFVISPQWFTK 38 (163)
T ss_pred CCCEEEEEECCCCCCC
T ss_conf 4884898878755468
No 190
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (). It catalyzes the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex () is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: Biotin carrier protein + ATP + HCO_3^- -> Carboxybiotin carrier protein + ADP + P_i Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=39.26 E-value=21 Score=14.06 Aligned_cols=20 Identities=20% Similarity=0.384 Sum_probs=14.9
Q ss_pred HHHHHCCCCCCCEECCCCCC
Q ss_conf 66430465311101677752
Q gi|254780933|r 306 EIAKRHGLGFINILTPEAKI 325 (947)
Q Consensus 306 ~~~~~~~l~~~~~~~~~g~~ 325 (947)
+.+.|.++|++..||..|-+
T Consensus 153 ~~AerF~~PIi~fiDT~GAY 172 (329)
T TIGR00513 153 KMAERFNLPIITFIDTPGAY 172 (329)
T ss_pred HHHHHCCCCEEEEECCCCCC
T ss_conf 87776179858865388887
No 191
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=39.04 E-value=13 Score=15.66 Aligned_cols=47 Identities=26% Similarity=0.483 Sum_probs=32.1
Q ss_pred CCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC---CHHHHHHH
Q ss_conf 45653023320254034445431233556775434110111---00001234
Q gi|254780933|r 598 GNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAG---YRNFITKF 646 (947)
Q Consensus 598 GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~---~r~f~nKL 646 (947)
|-.|++.++.++||-||+ |+...|-.+.=+|+.=+.+.+ ..+|+.++
T Consensus 216 Gkt~TL~eL~~~YGfDAV--FIgtGAG~pkl~NipG~~L~gvysA~dfLtR~ 265 (462)
T TIGR01316 216 GKTVTLEELLEKYGFDAV--FIGTGAGLPKLLNIPGEELKGVYSANDFLTRV 265 (462)
T ss_pred CCCHHHHHHHHHCCCCEE--EEEECCCCCEECCCCCHHHCCHHHHHHHHHHH
T ss_conf 051128888875197079--99506898700167843434002234688777
No 192
>pfam09730 BicD Microtubule-associated protein Bicaudal-D. BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER). For full functioning they bind with GSK-3beta pfam05350 to maintain the anchoring of microtubules to the centromere. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells.
Probab=38.98 E-value=21 Score=14.03 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999988999999999999998
Q gi|254780933|r 882 VKERSRLKKSLEKVLDELSSIK 903 (947)
Q Consensus 882 ~~e~~rl~K~l~~l~~~i~~~~ 903 (947)
+.|+.-..--+.++..+++.++
T Consensus 626 E~EK~~v~ETM~KLRnELKaLK 647 (711)
T pfam09730 626 ENEKAMVTETMMKLRNELKALK 647 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7688899999999999999987
No 193
>pfam00038 Filament Intermediate filament protein.
Probab=38.85 E-value=21 Score=14.01 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999988999999999999998660792367858889999999999999999999999999986
Q gi|254780933|r 881 FVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIR 945 (947)
Q Consensus 881 ~~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l~ 945 (947)
...|+.++..++..++.+|..+.++.. -.++.-.++-......+.+++..|..++..+..++
T Consensus 214 ~k~E~~~lr~~i~~L~~el~~l~~~~~---~Le~~l~e~e~~~~~e~~~~q~~i~~lE~el~~lr 275 (312)
T pfam00038 214 AKEEITELRRQIQSLEIELQSLKKQKA---SLERQLAELEERYELELADYQDTISELEEELQQLK 275 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999---99989999999799999999999999999999999
No 194
>KOG0804 consensus
Probab=38.50 E-value=22 Score=13.97 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999998
Q gi|254780933|r 919 ILQAEKERFSKVEKKRISLENSLERI 944 (947)
Q Consensus 919 vv~~er~kl~~~~~~i~~l~~~l~~l 944 (947)
..+.++.......++|.-|++||..|
T Consensus 422 ~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804 422 LEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999877888888899999768
No 195
>KOG2129 consensus
Probab=38.49 E-value=22 Score=13.97 Aligned_cols=10 Identities=20% Similarity=0.052 Sum_probs=5.9
Q ss_pred HHHHHHCCCC
Q ss_conf 2554312456
Q gi|254780933|r 591 QKMSKSKGNV 600 (947)
Q Consensus 591 ~KMSKS~GNv 600 (947)
-||+-|-||.
T Consensus 437 s~a~~s~~~~ 446 (552)
T KOG2129 437 SKAEASFAVL 446 (552)
T ss_pred HHHHHHHHHH
T ss_conf 2666767666
No 196
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=37.68 E-value=12 Score=15.73 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=14.1
Q ss_pred CEEECCCEEEECCCCCC
Q ss_conf 43313320220377678
Q gi|254780933|r 169 LIYRDKRIVNWDPSLKT 185 (947)
Q Consensus 169 liy~~~~~v~w~p~~~T 185 (947)
..|++..++.|||.|+-
T Consensus 4 ~dr~~~~~~~WCPGCG~ 20 (284)
T PRK11869 4 FDRPGSIDIAWCPGCGN 20 (284)
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 43678998757899975
No 197
>TIGR02169 SMC_prok_A chromosome segregation protein SMC; InterPro: IPR011891 The SMC (structural maintenance of chromosomes) family of proteins, exist in virtually all organisms including both bacteria and archaea. The SMC proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms and form three types of heterodimer (SMC1SMC3, SMC2SMC4, SMC5SMC6), which are core components of large multiprotein complexes. The best known complexes are cohesin, which is responsible for sister-chromatid cohesion, and condensin, which is required for full chromosome condensation in mitosis. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and share a five-domain structure, with globular N- and C-terminal (IPR003395 from INTERPRO) domains separated by a long (circa 100 nm or 900 residues) coiled coil segment in the centre of which is a globular ''hinge'' domain, characterised by a set of four highly conserved glycine residues that are typical of flexible regions in a protein. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif (XXXXD, where X is any hydrophobic residue), and a LSGG motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases . All SMC proteins appear to form dimers, either forming homodimers with themselves, as in the case of prokaryotic SMC proteins, or heterodimers between different but related SMC proteins. The dimers are arranged in an antiparallel alignment. This orientation brings the N- and C-terminal globular domains (from either different or identical protamers) together, which unites an ATP binding site (Walker A motif) within the N-terminal domain with a Walker B motif (DA box) within the C-terminal domain, to form a potentially functional ATPase. Protein interaction and microscopy data suggest that SMC dimers form a ring-like structure which might embrace DNA molecules. Non-SMC subunits associate with the SMC amino- and carboxy-terminal domains. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. SMCs share not only sequence similarity but also structural similarity with ABC proteins. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression . This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by IPR011890 from INTERPRO. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent ..
Probab=36.81 E-value=23 Score=13.79 Aligned_cols=59 Identities=27% Similarity=0.450 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999988999999999999998660792367858889999999999999999999999999986
Q gi|254780933|r 880 DFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIR 945 (947)
Q Consensus 880 D~~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l~ 945 (947)
|++.++..|.+++..+++++..++.+.+.=+ .-++..+.++..++++++.+...++.|.
T Consensus 915 ~L~~~l~~L~~~r~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 973 (1202)
T TIGR02169 915 DLEKELKDLKKERDELEAQLRELERKIEELE-------AEIEKKRERLKELKAKLEALEEELSEIE 973 (1202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7899987699999999999999999999999-------9999999999999999999998987420
No 198
>smart00313 PXA Domain associated with PX domains. unpubl. observations
Probab=36.67 E-value=23 Score=13.78 Aligned_cols=11 Identities=9% Similarity=0.208 Sum_probs=4.9
Q ss_pred HHHCCHHHHHH
Q ss_conf 66079236785
Q gi|254780933|r 904 KKLENNQFVEK 914 (947)
Q Consensus 904 ~kL~N~~Fv~k 914 (947)
.+|++|.|++.
T Consensus 156 ~~lsdPD~iN~ 166 (176)
T smart00313 156 THLSDPDTINL 166 (176)
T ss_pred HHHCCHHHHHH
T ss_conf 98569599999
No 199
>KOG2369 consensus
Probab=36.64 E-value=18 Score=14.47 Aligned_cols=75 Identities=13% Similarity=0.068 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHH-HHHHHC
Q ss_conf 888998888764333210223222356665-532444312221214542023334320024411214431135-676410
Q gi|254780933|r 360 SKIVSLLEKSNLLDKTDSYRHIVPHCERSG-VTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSY-YEWLEN 437 (947)
Q Consensus 360 ~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~-~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~-~~wl~~ 437 (947)
..+|+.|..-|. ...+..+.+||+||=. +. .--.+|.|.++++.-+.+.+.-.++++..++-++.+.+ +.+|+.
T Consensus 127 ~~~i~~lv~~GY--e~~~~l~ga~YDwRls~~~--~e~rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~l~~lyFl~w 202 (473)
T KOG2369 127 HELIENLVGIGY--ERGKTLFGAPYDWRLSYHN--SEERDQYLSKLKKKIETMYKLNGGKKVVLISHSMGGLYVLYFLKW 202 (473)
T ss_pred HHHHHHHHHHCC--CCCCEEECCCCCHHHCCCC--HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHC
T ss_conf 999999876172--1686255055333005687--557779999999999999987289746999537741799998740
Q ss_pred C
Q ss_conf 1
Q gi|254780933|r 438 I 438 (947)
Q Consensus 438 ~ 438 (947)
.
T Consensus 203 ~ 203 (473)
T KOG2369 203 V 203 (473)
T ss_pred C
T ss_conf 6
No 200
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=36.26 E-value=23 Score=13.73 Aligned_cols=19 Identities=21% Similarity=-0.015 Sum_probs=11.8
Q ss_pred CCCCEEEECCCCCHHHHHH
Q ss_conf 2232032124778556566
Q gi|254780933|r 289 FGDGAVKVTPAHDFNDFEI 307 (947)
Q Consensus 289 ~GTG~V~~~Pah~~~Dy~~ 307 (947)
.|.|+.--.|+.+..|+.-
T Consensus 201 ~gyg~~~~n~~~~~fd~~~ 219 (772)
T COG1501 201 RGYGLFVDNSAYGSFDVGS 219 (772)
T ss_pred CCEEEEEECCCCEEEECCC
T ss_conf 6548999778746887688
No 201
>pfam02450 LACT Lecithin:cholesterol acyltransferase. Lecithin:cholesterol acyltransferase (LACT) is involved in extracellular metabolism of plasma lipoproteins, including cholesterol.
Probab=35.64 E-value=22 Score=13.89 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHH-HHHH
Q ss_conf 8889988887643332102232223566655324443122212145420233343200244112144311356-7641
Q gi|254780933|r 360 SKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYY-EWLE 436 (947)
Q Consensus 360 ~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~-~wl~ 436 (947)
..|++.|.+.|. ........-||+||=. +...+++|.+++.+-+.+.+. .++++-++.-++...+. .+|+
T Consensus 68 ~~li~~L~~~GY--~~~~~l~~ApYDwR~~----p~~~~~yf~~LK~lIE~~y~~-ng~kVvli~HSmG~~~~~~FL~ 138 (382)
T pfam02450 68 HKVVKNLVNIGY--ERNKTVSAAPYDWRLS----PAERDDYFKKLKQLIEEALKL-SGQKVVLIGHSMGNLLVLYFLL 138 (382)
T ss_pred HHHHHHHHHCCC--CCCCEEEECCCCCCCC----CHHHHHHHHHHHHHHHHHHHH-CCCEEEEEEECCCCHHHHHHHH
T ss_conf 999999998098--7897133066332468----405668999999999999997-0986999975785289999975
No 202
>KOG0996 consensus
Probab=35.58 E-value=24 Score=13.66 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=11.1
Q ss_pred HHHHHHCCCCCCCCCCC
Q ss_conf 99876708983567788
Q gi|254780933|r 66 MIRFERMRGKNVLWQPG 82 (947)
Q Consensus 66 ~~Ry~rm~G~~Vl~~~G 82 (947)
+--|+--.|..++-||-
T Consensus 91 ~~NFKSYaG~~ilGPFH 107 (1293)
T KOG0996 91 VENFKSYAGKQILGPFH 107 (1293)
T ss_pred HHHHHHHCCCEEECCCC
T ss_conf 54006416864216778
No 203
>TIGR01063 gyrA DNA gyrase, A subunit; InterPro: IPR005743 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively. This entry represents the A subunit (gyrA) as found predominantly in bacteria, but does not include the topoisomerase II enzymes composed of a single polypeptide, as are found in most eukaryotes. GyrA has two functional domains: an N-terminal that forms the covalent DNA-protein bridge that is responsible for the breaking- and rejoining function, and a C-terminal that can bind DNA non-specifically . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=35.51 E-value=24 Score=13.65 Aligned_cols=43 Identities=21% Similarity=0.407 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 99998899999999999999866079236785888999999999999
Q gi|254780933|r 883 KERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSK 929 (947)
Q Consensus 883 ~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~ 929 (947)
-|..||+++++.|...|+-++.=|+++.=+ .+||.+|-.++.+
T Consensus 454 LE~~Kl~~E~~~L~~~I~~l~~iL~~~~r~----~~iireEL~~i~~ 496 (864)
T TIGR01063 454 LEREKLEEEYKELLELIADLEDILASEERV----LEIIREELEEIKE 496 (864)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHH----HHHHHHHHHHHHH
T ss_conf 889999999999999999999750377689----9999999999999
No 204
>pfam08657 DASH_Spc34 DASH complex subunit Spc34. The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis. In Saccharomyces cerevisiae DASH forms both rings and spiral structures on microtubules in vitro. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules.
Probab=35.30 E-value=24 Score=13.63 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4999999988999999999999
Q gi|254780933|r 879 VDFVKERSRLKKSLEKVLDELS 900 (947)
Q Consensus 879 iD~~~e~~rl~K~l~~l~~~i~ 900 (947)
++.++.+.|=+++|..|+.++.
T Consensus 188 ~~~de~I~rEe~EIreLE~~~~ 209 (212)
T pfam08657 188 DDIDELIEKEEEEIRELERQLR 209 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4389999999999999999998
No 205
>KOG0995 consensus
Probab=35.27 E-value=24 Score=13.62 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 34488899888876
Q gi|254780933|r 357 AARSKIVSLLEKSN 370 (947)
Q Consensus 357 ~a~~~ii~~L~~~g 370 (947)
.+-..|...|.+.|
T Consensus 74 ~c~~~I~~fL~eng 87 (581)
T KOG0995 74 QCIRQIYNFLVENG 87 (581)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999998748
No 206
>pfam11499 DUF3214 Protein of unknown function (DUF3214). This family of proteins with unknown function appears to be restricted to Thermotogae.
Probab=35.17 E-value=24 Score=13.61 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 899999999999999999999999999861
Q gi|254780933|r 917 PSILQAEKERFSKVEKKRISLENSLERIRM 946 (947)
Q Consensus 917 ~~vv~~er~kl~~~~~~i~~l~~~l~~l~~ 946 (947)
.+++|+.+.++..+++..+.|....+.++.
T Consensus 41 ~ei~EkDk~R~e~ik~~~~~l~q~~~~ir~ 70 (77)
T pfam11499 41 QEIVEKDKKRIEKIKKHMAQLKQNAKNIRN 70 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999997789999999999999999988874
No 207
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=35.15 E-value=24 Score=13.61 Aligned_cols=55 Identities=13% Similarity=0.341 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98899999999999999866079236785888999----99999999999999999999999861
Q gi|254780933|r 886 SRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSIL----QAEKERFSKVEKKRISLENSLERIRM 946 (947)
Q Consensus 886 ~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv----~~er~kl~~~~~~i~~l~~~l~~l~~ 946 (947)
..++.++..+.+.+..++.+|+.+. .+|| -+.|.-+++....|.+|++.|+.++.
T Consensus 91 E~le~~l~~~~~Rl~~LE~qL~qKA------DDVVSyQLLqHRrEiEEm~~~lq~Le~ri~klE~ 149 (178)
T PRK13182 91 EQLEAQLNTITRRLDELEEQLQQKA------DDVVSYQLLQHRREMEEMLERIQKLEARLKKLEP 149 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC------CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999998642------3200189998799999999999999999998615
No 208
>pfam01576 Myosin_tail_1 Myosin tail. The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Probab=35.10 E-value=24 Score=13.61 Aligned_cols=26 Identities=8% Similarity=0.300 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999986
Q gi|254780933|r 920 LQAEKERFSKVEKKRISLENSLERIR 945 (947)
Q Consensus 920 v~~er~kl~~~~~~i~~l~~~l~~l~ 945 (947)
++..++....++..+.+++..++.|+
T Consensus 787 ~ee~~k~~~~~~~~~~k~~~~~~~~k 812 (859)
T pfam01576 787 VEEDKKNLERLQDLVDKLQAKIKTYK 812 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67778878987989999999999999
No 209
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=34.59 E-value=13 Score=15.48 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=19.2
Q ss_pred HHCCCEEECCCEEEECCCCCCCCC
Q ss_conf 988943313320220377678014
Q gi|254780933|r 165 YKDGLIYRDKRIVNWDPSLKTSVS 188 (947)
Q Consensus 165 ~~~gliy~~~~~v~w~p~~~T~ls 188 (947)
++++-.+-|+-|++||-.|+-+|-
T Consensus 2 ~kk~~~~~gk~~iyWCe~cNlPl~ 25 (202)
T COG5270 2 RKKMPVVLGKFPIYWCEKCNLPLL 25 (202)
T ss_pred CCCCCEEECCCCEEEHHHCCCCCC
T ss_conf 755530305430641322887435
No 210
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=34.24 E-value=25 Score=13.51 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 98899999999999999866079236785888999999999999999999999999998619
Q gi|254780933|r 886 SRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIRML 947 (947)
Q Consensus 886 ~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l~~l 947 (947)
.-|++++..+++++..++.||. ++-+.-+.+...++.-+.++++|=..|.++
T Consensus 626 ~~l~~~i~~~~~~i~~~~~rl~----------~~e~ry~~QF~ame~~~~~mnsqs~~L~~~ 677 (684)
T PRK06664 626 KSLDEKIANNNKKVEEYEKKLE----------SRERKLKGKFLTMDQTVKKNKKQGNYLKNF 677 (684)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6799999899999999999999----------999999999999999999999999999987
No 211
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=33.95 E-value=21 Score=14.12 Aligned_cols=74 Identities=12% Similarity=0.263 Sum_probs=42.9
Q ss_pred CCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHH-HHHHHHCCCCCCCEE
Q ss_conf 7401010244444410001231115423320248657321000034212232032124778556-566430465311101
Q gi|254780933|r 241 RPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFND-FEIAKRHGLGFINIL 319 (947)
Q Consensus 241 rPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D-y~~~~~~~l~~~~~~ 319 (947)
||+-+.- ||.+++.++|+++.-..... -| ....|.--.-|+.|..+|..++.. -.+-+..+.+.+-++
T Consensus 214 TPdeIL~------NPaneyVe~F~~~~dl~qv~---~P--~~~~i~~~~~~~~i~~t~~~gp~~Al~Lm~~~~~~s~yvv 282 (372)
T TIGR01186 214 TPDEILR------NPANEYVEEFIGKVDLSQVL---SP--DAERIAKRMNTVPITKTADKGPRSALKLMRDERVDSLYVV 282 (372)
T ss_pred CCHHHHC------CCCHHHHHHHHCCCEEEEEC---CC--CHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 8468742------88067999873751157523---88--8899996527732686589887899999986597179999
Q ss_pred CCCCCC
Q ss_conf 677752
Q gi|254780933|r 320 TPEAKI 325 (947)
Q Consensus 320 ~~~g~~ 325 (947)
+..-++
T Consensus 283 ~~~~~l 288 (372)
T TIGR01186 283 DRQNKL 288 (372)
T ss_pred ECCCEE
T ss_conf 728548
No 212
>PRK08724 fliD flagellar capping protein; Validated
Probab=33.61 E-value=26 Score=13.44 Aligned_cols=50 Identities=12% Similarity=0.291 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 889999999999999986607923678588899999999999999999999999999861
Q gi|254780933|r 887 RLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIRM 946 (947)
Q Consensus 887 rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l~~ 946 (947)
=|+++++++..+...++.||. .+-+.-+++....+.-+.+++.|+..|-+
T Consensus 634 sl~~~~~~l~d~~~~l~~Rm~----------~~e~rl~~QF~AMd~~v~~m~sQ~~~~~~ 683 (686)
T PRK08724 634 SLREQNYRLNDDQVALDRRME----------SLEKRTHAKFAAMQDATGKMQGQLGGMMN 683 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 799999888989999999999----------99999999999999999999988999887
No 213
>TIGR02890 spore_yteA sporulation protein, yteA family; InterPro: IPR014240 This entry contains predicted regulatory proteins that are found in nearly every species of the endospore-forming bacteria within the Firmicutes (low-GC Gram-positive bacteria), with the exception of Clostridium perfringens. Some (but not all) of these proteins contain an unusual DksA/TraR C4-type zinc finger, where only one of the four key Cys residues is conserved. All members of this entry share an additional C-terminal domain. The function of proteins in this family is unknown. YteA is found in mature spores of Bacillus subtilis and its expression appeasr to be regulated by sigma-K ..
Probab=33.36 E-value=15 Score=15.07 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCE
Q ss_conf 222356665532
Q gi|254780933|r 381 IVPHCERSGVTI 392 (947)
Q Consensus 381 ~~p~c~R~~~~i 392 (947)
.||.|..||.+|
T Consensus 87 tYGICe~cG~~I 98 (167)
T TIGR02890 87 TYGICEVCGKPI 98 (167)
T ss_pred CCEEECCCCCCC
T ss_conf 970004487879
No 214
>TIGR00092 TIGR00092 GTP-binding protein YchF; InterPro: IPR004396 This is a family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined . This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and a C-terminal domain composed of a six-stranded half-barrel curved around an alpha helix. The central and C-terminal domains are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; GO: 0005525 GTP binding.
Probab=32.77 E-value=26 Score=13.35 Aligned_cols=12 Identities=8% Similarity=0.108 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHC
Q ss_conf 489999999743
Q gi|254780933|r 754 IPFVTEDLYSHV 765 (947)
Q Consensus 754 ~PfitEeiw~~l 765 (947)
+|--|=.|+.-|
T Consensus 324 APqAAG~IH~Df 335 (390)
T TIGR00092 324 APQAAGVIHTDF 335 (390)
T ss_pred HHHHHHHHHHHH
T ss_conf 146774530153
No 215
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089 This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=32.58 E-value=25 Score=13.54 Aligned_cols=48 Identities=27% Similarity=0.258 Sum_probs=29.3
Q ss_pred HCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 12456530233202540344454312335567754341101110000123444333
Q gi|254780933|r 596 SKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIR 651 (947)
Q Consensus 596 S~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r~f~nKLwNa~r 651 (947)
|+||=.|..+ +|.++|+ ...+..+-+-+-.|.+..+++|+.+...++|
T Consensus 185 S~GNkAD~~e------~Dlley~--~~D~~T~~I~~Y~Eg~~DG~~Fl~~A~~~s~ 232 (457)
T TIGR02717 185 SLGNKADIDE------SDLLEYL--ADDPDTKVILLYLEGIKDGRKFLKTAKEISK 232 (457)
T ss_pred ECCCCEECCH------HHHHHHH--HCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 2674111165------7788898--5398940899971787041689999888630
No 216
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=32.50 E-value=27 Score=13.32 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999889999999999999986
Q gi|254780933|r 880 DFVKERSRLKKSLEKVLDELSSIKK 904 (947)
Q Consensus 880 D~~~e~~rl~K~l~~l~~~i~~~~~ 904 (947)
++..++.+|++++.-+...+...+.
T Consensus 114 ~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 114 ELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999889889988999999998
No 217
>pfam06172 Cupin_5 Cupin superfamily (DUF985). Family of uncharacterized proteins found in bacteria and eukaryotes that belongs to the Cupin superfamily.
Probab=32.46 E-value=17 Score=14.70 Aligned_cols=25 Identities=40% Similarity=0.586 Sum_probs=15.7
Q ss_pred CCCCCCCCEE--EECCCCCHHHHHHHH
Q ss_conf 3421223203--212477855656643
Q gi|254780933|r 285 PDPEFGDGAV--KVTPAHDFNDFEIAK 309 (947)
Q Consensus 285 V~~~~GTG~V--~~~Pah~~~Dy~~~~ 309 (947)
+...-+-++| +++|+.++.||++++
T Consensus 113 l~~~~~~~Lvsc~VaPGF~f~Dfela~ 139 (139)
T pfam06172 113 LESLGGFSLVGCTVAPGFDFEDFELAE 139 (139)
T ss_pred ECCCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf 879998199997734979676589369
No 218
>COG1084 Predicted GTPase [General function prediction only]
Probab=32.19 E-value=12 Score=15.90 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 1555677999999998889987531001024577765310013688986-476530567144432100014567640345
Q gi|254780933|r 671 WIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEF-IKSILNQKDSELVSETLSCFSYVLYNVCKL 749 (947)
Q Consensus 671 ~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~-~K~~l~~~~~~~~~~~~~~l~~vl~~~l~l 749 (947)
..+-|-...|+.++++++.+.++-.+ .|-..+-.+= . |+. .....-+|-++-- .++|...+.+---=
T Consensus 127 ~~lrR~a~GR~aSiik~i~~~L~fL~--~~r~~l~~LP-----~--Idp~~pTivVaG~PNVG---KSSlv~~lT~AkpE 194 (346)
T COG1084 127 NQLRRQAFGRVASIIKKIDDDLEFLR--KARDHLKKLP-----A--IDPDLPTIVVAGYPNVG---KSSLVRKLTTAKPE 194 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCC-----C--CCCCCCEEEEECCCCCC---HHHHHHHHHCCCCC
T ss_conf 99999998789999998627899999--9999985088-----7--79999738985699875---89999887548976
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 6774489999999743566676756536635787877477898999999-9999999998889
Q gi|254780933|r 750 LHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLIIDDSESIEEVNW-IIDLISKVRSIRT 811 (947)
Q Consensus 750 l~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~~~d~~~~~~~~~-~~~ii~~iR~~R~ 811 (947)
.+|. ||+|-.|. +|+...... -+-.-+=| ..-|.-+. +++. =++.|.++|.++.
T Consensus 195 vA~Y-PFTTK~i~--vGhfe~~~~--R~QvIDTP--GlLDRPl~-ErN~IE~qAi~AL~hl~~ 249 (346)
T COG1084 195 VAPY-PFTTKGIH--VGHFERGYL--RIQVIDTP--GLLDRPLE-ERNEIERQAILALRHLAG 249 (346)
T ss_pred CCCC-CCCCCCEE--EEEEECCCC--EEEEECCC--CCCCCCHH-HHCHHHHHHHHHHHHHCC
T ss_conf 6788-85336546--765504870--58984288--64578857-736899999999997428
No 219
>PRK13795 hypothetical protein; Provisional
Probab=31.99 E-value=26 Score=13.35 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=17.9
Q ss_pred CCEEECCCEEEECCCCCCCCC
Q ss_conf 943313320220377678014
Q gi|254780933|r 168 GLIYRDKRIVNWDPSLKTSVS 188 (947)
Q Consensus 168 gliy~~~~~v~w~p~~~T~ls 188 (947)
+-+|.|+-.++||+.|+.||=
T Consensus 3 ~p~~lgk~~l~WC~~CNvPll 23 (630)
T PRK13795 3 RPVYLGKMYIYWCEKCNLPLL 23 (630)
T ss_pred CCEEEEEEEEEECCCCCCEEC
T ss_conf 852650169998588897321
No 220
>pfam01496 V_ATPase_I V-type ATPase 116kDa subunit family. This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) subunits, as well as V-type ATP synthase subunit i. The V-type ATPases family are proton pumps that acidify intracellular compartments in eukaryotic cells for example yeast central vacuoles, clathrin-coated and synaptic vesicles. They have important roles in membrane trafficking processes. The 116kDa subunit (subunit a) in the V-type ATPase is part of the V0 functional domain responsible for proton transport. The a subunit is a transmembrane glycoprotein with multiple putative transmembrane helices it has a hydrophilic amino terminal and a hydrophobic carboxy terminal. It has roles in proton transport and assembly of the V-type ATPase complex. This subunit is encoded by two homologous gene in yeast VPH1 and STV1.
Probab=31.67 E-value=27 Score=13.22 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=8.7
Q ss_pred CEECCCCCHHHHHHHHC
Q ss_conf 11214431135676410
Q gi|254780933|r 421 SFIPQSWDKSYYEWLEN 437 (947)
Q Consensus 421 ~~~P~~~~~~~~~wl~~ 437 (947)
-|+|+....+..+-|++
T Consensus 287 gWvP~~~~~~v~~~L~~ 303 (707)
T pfam01496 287 GWVPAKDLEKLKAALEN 303 (707)
T ss_pred EEEEHHHHHHHHHHHHH
T ss_conf 98338679999999998
No 221
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=31.48 E-value=23 Score=13.82 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=15.9
Q ss_pred CCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 53023320254034445431233556775434110111
Q gi|254780933|r 601 VDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAG 638 (947)
Q Consensus 601 idp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~ 638 (947)
+||.+ +.+..+.++-.+.....+-..+-.|-..+.|
T Consensus 145 pDpl~--~~~~~~~~~~~l~~~~~~IK~~LlDQ~~iaG 180 (283)
T PRK13945 145 PEPFS--PEFNVEYLKKKLKGRTRSIKTALLDQSIVAG 180 (283)
T ss_pred CCCCC--CCCCHHHHHHHHHHCCCCCCEEEECCCEECC
T ss_conf 87112--3268999998875267543517751885234
No 222
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit; InterPro: IPR005741 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . This entry represents subunit A (parC) of topoisomerase IV from Gram positive bacteria. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication . Topoisomerase IV consists of two polypeptide subunits, parC (subunit A), which is homologous to gyrA of topoisomerase II, and parE (subunit B), which is homologous to gyrB of topoisomerase II. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=31.35 E-value=28 Score=13.18 Aligned_cols=21 Identities=0% Similarity=0.115 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 54341101110000123444333
Q gi|254780933|r 629 INLDLERIAGYRNFITKFWNAIR 651 (947)
Q Consensus 629 ~~fs~~~i~~~r~f~nKLwNa~r 651 (947)
.+|.+++.|+. ...+|+|.++
T Consensus 406 f~FT~~QAEAI--v~LrLY~LTn 426 (745)
T TIGR01061 406 FEFTENQAEAI--VSLRLYRLTN 426 (745)
T ss_pred CCCCHHHHHHH--HHHHHHCCCC
T ss_conf 37772579999--9988603732
No 223
>pfam12621 DUF3779 Phosphate metabolism protein. This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with pfam02714. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=30.48 E-value=28 Score=13.11 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=20.6
Q ss_pred EECCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 31332022037767801486865414
Q gi|254780933|r 171 YRDKRIVNWDPSLKTSVSDLEVIQKE 196 (947)
Q Consensus 171 y~~~~~v~w~p~~~T~ls~~Ev~~~~ 196 (947)
.....|+.|.|++.-.+|..||++-.
T Consensus 41 v~~~~P~lWIPrD~~GvS~~ei~~~~ 66 (95)
T pfam12621 41 VTAPPPLLWIPRDPMGLSRQEIEHTS 66 (95)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 26899858854697775899999965
No 224
>pfam05934 MCLC Mid-1-related chloride channel (MCLC). This family consists of several mid-1-related chloride channels. mid-1-related chloride channel (MCLC) proteins function as a chloride channel when incorporated in the planar lipid bilayer.
Probab=30.00 E-value=29 Score=13.03 Aligned_cols=31 Identities=13% Similarity=0.080 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEECCCEEEE
Q ss_conf 8867999999999999988943313320220
Q gi|254780933|r 149 MDEGMSNAVRNAFVVLYKDGLIYRDKRIVNW 179 (947)
Q Consensus 149 ~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w 179 (947)
..|-|.+++..+++++-+-||=-.+.--+.|
T Consensus 113 s~pvFrRyLnKiL~EagklGLPde~~~dmHY 143 (577)
T pfam05934 113 SNAIFKRYLNKILIEAGKIGLPDENKGDAHY 143 (577)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 4489999999999998752899777665321
No 225
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=29.70 E-value=29 Score=12.99 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 999999889999999999999986607923678588899999999999999999999-999999
Q gi|254780933|r 881 FVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISL-ENSLER 943 (947)
Q Consensus 881 ~~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l-~~~l~~ 943 (947)
++.-..-|.++...++.++. +.+-.++.|++++..++---+++|..++...+... +.+++-
T Consensus 124 ~E~~~~~l~~k~~e~~~~ve--~~~~~~e~f~~~~~~d~eRf~~~K~~Dlk~~l~~~A~~qi~~ 185 (201)
T cd07622 124 LEKAEDALANKKQQGEEAVK--EAKDELNEFVKKALEDVERFKKQKVRDLKEILISYAKLQIKL 185 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999887899999999--999889999999999999999999999999999999999999
No 226
>pfam05863 consensus
Probab=29.50 E-value=8.1 Score=17.08 Aligned_cols=14 Identities=50% Similarity=0.907 Sum_probs=7.8
Q ss_pred EECC-EEECCCCCCC
Q ss_conf 0022-0204423332
Q gi|254780933|r 510 VLDT-WFSSALWPFA 523 (947)
Q Consensus 510 vlDt-WfdSg~~p~~ 523 (947)
.||+ |.||-||||.
T Consensus 162 ~LDv~~VSSlSWYFL 176 (238)
T pfam05863 162 DLDVRWVSSLSWYFL 176 (238)
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 577303457889999
No 227
>KOG3188 consensus
Probab=29.45 E-value=9.9 Score=16.46 Aligned_cols=10 Identities=60% Similarity=1.195 Sum_probs=6.5
Q ss_pred EEECCCCCCC
Q ss_conf 0204423332
Q gi|254780933|r 514 WFSSALWPFA 523 (947)
Q Consensus 514 WfdSg~~p~~ 523 (947)
|.||.||+|.
T Consensus 166 wVSS~SWYFL 175 (246)
T KOG3188 166 WVSSASWYFL 175 (246)
T ss_pred HHHHHHHHHH
T ss_conf 7634578999
No 228
>pfam09139 Mmp37 Mitochondrial matrix Mmp37. MMp37 is a mitochondrial matrix protein that functions in the translocation of proteins across the mitochondrial inner membrane.
Probab=29.33 E-value=21 Score=14.08 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=7.4
Q ss_pred CCCCCCCC-CCCCCCCE
Q ss_conf 11123212-35456310
Q gi|254780933|r 438 IQPWCISR-QIWWGHQI 453 (947)
Q Consensus 438 ~~DW~ISR-qr~WG~pI 453 (947)
+....||+ |.-||..+
T Consensus 73 lG~~~is~vQ~~~GagV 89 (324)
T pfam09139 73 LGPKAISKVQENFGAGV 89 (324)
T ss_pred CCHHHHHHHHHHHCCCE
T ss_conf 38889999999738976
No 229
>TIGR02336 TIGR02336 conserved hypothetical protein TIGR02336; InterPro: IPR012711 The function of proteins in this family is unknown. Members are found so far only in a small number of phylogenetically diverse bacteria, including Clostridium perfringens (in the firmicutes), Bifidobacterium longum (in the actinobacteria), and Vibrio vulnificus (in the proteobacteria)..
Probab=29.21 E-value=15 Score=15.04 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=18.1
Q ss_pred CCEEEECCCCCHHHHHHHHHCCCCCCCEEC
Q ss_conf 320321247785565664304653111016
Q gi|254780933|r 291 DGAVKVTPAHDFNDFEIAKRHGLGFINILT 320 (947)
Q Consensus 291 TG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~ 320 (947)
||+-.++---.-+|||--.=|+|-+-.+++
T Consensus 233 fGy~~tVSPrALedFE~~~GYkLrPEDfVD 262 (767)
T TIGR02336 233 FGYAETVSPRALEDFEKKFGYKLRPEDFVD 262 (767)
T ss_pred ECCCCCCCCHHHHHHHHHCCCCCCCCCEEE
T ss_conf 023675660127889975388668742340
No 230
>pfam01134 GIDA Glucose inhibited division protein A.
Probab=29.12 E-value=26 Score=13.40 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=5.8
Q ss_pred HCCCCHHHHHHH
Q ss_conf 202540344454
Q gi|254780933|r 607 IDQYGADALRFY 618 (947)
Q Consensus 607 i~~yGaDalR~~ 618 (947)
+++.|-+..||.
T Consensus 180 L~~lg~~~~rlk 191 (391)
T pfam01134 180 LKELGFELGRFK 191 (391)
T ss_pred HHHHCCCCEEEC
T ss_conf 998286210320
No 231
>pfam07082 DUF1350 Protein of unknown function (DUF1350). This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=28.98 E-value=30 Score=12.91 Aligned_cols=17 Identities=6% Similarity=0.231 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 89988887643332102
Q gi|254780933|r 362 IVSLLEKSNLLDKTDSY 378 (947)
Q Consensus 362 ii~~L~~~g~l~~~~~~ 378 (947)
.++.|-++|.++...+|
T Consensus 39 lLe~L~~~g~~ViAtpy 55 (250)
T pfam07082 39 LLEHLGEAGYVVIATPF 55 (250)
T ss_pred HHHHHHHCCCEEEEECC
T ss_conf 99999878968999236
No 232
>PRK12704 phosphodiesterase; Provisional
Probab=28.91 E-value=30 Score=12.90 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 31001512334488899888876
Q gi|254780933|r 348 SEFEGLDCFAARSKIVSLLEKSN 370 (947)
Q Consensus 348 ~~~~G~~v~~a~~~ii~~L~~~g 370 (947)
-..+||+..+|++.+++.+++.-
T Consensus 80 E~iAgLT~eEAK~~Ll~~le~e~ 102 (455)
T PRK12704 80 ERISGLTAEEAKEILLEKVEEEL 102 (455)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99849999999999999999999
No 233
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=28.86 E-value=30 Score=12.89 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHCCCEE----ECC-CE-----EEECCCCCCCCCHHHHHCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 9999999999889433----133-20-----220377678014868654146876699996530453000
Q gi|254780933|r 156 AVRNAFVVLYKDGLIY----RDK-RI-----VNWDPSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYR 215 (947)
Q Consensus 156 ~v~~~F~~L~~~gliy----~~~-~~-----v~w~p~~~T~ls~~Ev~~~~~~~~~~~ik~~l~~~~~~~ 215 (947)
....++.-+++.||-. +.. |. -.|-|.-.+++=|+=|- ...-|-.+|||+++-...
T Consensus 47 v~RRily~m~~~~l~~~~~~~KsarivG~v~GkyHPHGD~siY~a~vr----maQ~f~~r~plidg~GNf 112 (745)
T PRK05561 47 VQRRILYAMSELGLTPDAKFKKSARTVGDVLGKYHPHGDSAIYDAMVR----MAQDFSYRYPLVDGQGNF 112 (745)
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEEHHHCCCCCCCCHHHHHHHHHH----HCCHHHHCCCCCCCCCCC
T ss_conf 999999999972899999973631664100557789870479999999----733013157514278877
No 234
>pfam12574 120_Rick_ant 120kDa Rickettsia surface antigen. This domain family is found in bacteria, and is approximately 40 amino acids in length. This family is a Rickettsia surface antigen of 120kDa which may be used as an antigen for immune response against the bacterial species.
Probab=28.80 E-value=14 Score=15.24 Aligned_cols=13 Identities=46% Similarity=0.672 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHCC
Q ss_conf 0001225543124
Q gi|254780933|r 586 RDKNGQKMSKSKG 598 (947)
Q Consensus 586 ld~~G~KMSKS~G 598 (947)
+|++|+|||+|+-
T Consensus 21 ~d~~Gk~p~~~kA 33 (39)
T pfam12574 21 QDEDGKKPSASKA 33 (39)
T ss_pred ECCCCCCCCCCCC
T ss_conf 6267899770010
No 235
>COG3966 DltD Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=28.67 E-value=25 Score=13.49 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=11.1
Q ss_pred CCCEEEEEEHHHEEC
Q ss_conf 553244431222121
Q gi|254780933|r 389 GVTIEPCITEQWYLD 403 (947)
Q Consensus 389 ~~~i~~~~~~QWfi~ 403 (947)
|..|++++++|||.+
T Consensus 120 gKKivfViSPQWFtk 134 (415)
T COG3966 120 GKKIVFVISPQWFTK 134 (415)
T ss_pred CCEEEEEECCHHHCC
T ss_conf 865899978367443
No 236
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial; InterPro: IPR006248 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop , . Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) . Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway . The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) , . As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated . IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis . Although IRP2 is homologous to IRP1, IPR2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes . In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica , . In S.enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents mitochondrial aconitase (mAcn), as well as close homologues such as certain bacterial aconitase A (AcnA) enzymes. More information about these proteins can be found at Protein of the Month: Aconitase .; GO: 0003994 aconitate hydratase activity, 0051539 4 iron 4 sulfur cluster binding, 0006099 tricarboxylic acid cycle.
Probab=28.45 E-value=20 Score=14.21 Aligned_cols=16 Identities=13% Similarity=-0.018 Sum_probs=11.3
Q ss_pred CCCCCCCCCCEEECCC
Q ss_conf 2568888310188241
Q gi|254780933|r 494 MIKDGNISDLLKRDED 509 (947)
Q Consensus 494 ~~~~~~~~~~~~r~~D 509 (947)
...|+-|=+++.|..+
T Consensus 421 aNACGPCIGQW~R~D~ 436 (761)
T TIGR01340 421 ANACGPCIGQWDRKDV 436 (761)
T ss_pred ECCCCCCCCCCCCCCC
T ss_conf 3466888776553146
No 237
>pfam05524 PEP-utilizers_N PEP-utilising enzyme, N-terminal.
Probab=28.44 E-value=31 Score=12.84 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 499999998899999999999999866079
Q gi|254780933|r 879 VDFVKERSRLKKSLEKVLDELSSIKKKLEN 908 (947)
Q Consensus 879 iD~~~e~~rl~K~l~~l~~~i~~~~~kL~N 908 (947)
-|++.|+.||.+-+++...++..+..++..
T Consensus 31 ~~~~~E~~rl~~Al~~~~~~l~~l~~~~~~ 60 (123)
T pfam05524 31 EDVEAEIARLEAALEKAREELEALAERAAE 60 (123)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988999999999999999999999998764
No 238
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=28.31 E-value=22 Score=13.86 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHCCEE
Q ss_conf 9999999999808366
Q gi|254780933|r 125 SGGSILSQLKRLGASC 140 (947)
Q Consensus 125 ~~~~~~~~~~~lG~~~ 140 (947)
..+...+-.+++|+=+
T Consensus 151 s~~ea~~~a~~igyPv 166 (1063)
T PRK05294 151 TMEEALEVAEEIGYPV 166 (1063)
T ss_pred CHHHHHHHHHHCCCCE
T ss_conf 9999999998659988
No 239
>pfam11062 DUF2863 Protein of unknown function (DUF2863). This bacterial family of proteins have no known function.
Probab=27.97 E-value=31 Score=12.79 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=8.7
Q ss_pred CCCEEEECCCCCCCC
Q ss_conf 565366357878774
Q gi|254780933|r 773 KQGLLCHAQWPSLII 787 (947)
Q Consensus 773 ~~~si~~~~wP~~~~ 787 (947)
+.+-++---||-+..
T Consensus 312 ~~~V~yGvVWPLyG~ 326 (398)
T pfam11062 312 SDDVIYGVVWPLYGR 326 (398)
T ss_pred CCCEEEEEECCCCCC
T ss_conf 974799874114466
No 240
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=27.79 E-value=32 Score=12.77 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHH
Q ss_conf 99998899999999999999866079236785888999999
Q gi|254780933|r 883 KERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAE 923 (947)
Q Consensus 883 ~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~e 923 (947)
.++.+|.++++.++++++.+++.|++++- |.+++..|
T Consensus 405 ~e~~kL~~e~~~l~~ei~~L~~~l~~~~~----~~~~~~~E 441 (445)
T cd00187 405 LEREKLLKELKELEAEIEDLEKILASEER----PKDLWKEE 441 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHH
T ss_conf 99999999999999999999998679688----99999999
No 241
>KOG3067 consensus
Probab=27.74 E-value=32 Score=12.76 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 000123444333320
Q gi|254780933|r 640 RNFITKFWNAIRFSK 654 (947)
Q Consensus 640 r~f~nKLwNa~rf~~ 654 (947)
.+|+|++--.+|.+.
T Consensus 170 ~~fi~dlhs~FrlLn 184 (226)
T KOG3067 170 SNFINDLHSGFRLLN 184 (226)
T ss_pred HHHHHHHCCCCEEEE
T ss_conf 887755330226532
No 242
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.37 E-value=30 Score=12.92 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=35.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEE
Q ss_conf 31001512334488899888876-43332102232223566655324443122212
Q gi|254780933|r 348 SEFEGLDCFAARSKIVSLLEKSN-LLDKTDSYRHIVPHCERSGVTIEPCITEQWYL 402 (947)
Q Consensus 348 ~~~~G~~v~~a~~~ii~~L~~~g-~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi 402 (947)
-++-|+++.+|+..+.+.|...- ..+...-+.|-.+. +.++++|....++.|+-
T Consensus 99 LDLHG~tq~eAr~~L~~Fi~~a~~~~~rcv~VihGkG~-s~g~~~vLK~~Vp~WL~ 153 (184)
T COG2840 99 LDLHGLTQEEARQELGAFIARARAEGLRCVLVIHGKGR-SKGSKPVLKSQVPRWLT 153 (184)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-CCCCCHHHHHHHHHHHH
T ss_conf 35467889999999999999999808867999848676-78874267888799997
No 243
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=27.19 E-value=32 Score=12.69 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=5.8
Q ss_pred CCCCCEECCCCCC
Q ss_conf 5311101677752
Q gi|254780933|r 313 LGFINILTPEAKI 325 (947)
Q Consensus 313 l~~~~~~~~~g~~ 325 (947)
+|..-+++.+|.+
T Consensus 140 ~P~t~lId~~G~I 152 (176)
T PRK03147 140 LPTTFLIDKDGKV 152 (176)
T ss_pred CCEEEEECCCCEE
T ss_conf 8869999799979
No 244
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=27.09 E-value=20 Score=14.28 Aligned_cols=111 Identities=20% Similarity=0.154 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHH--------HHHHHHHHHHHHHHHCCEEECCCCEECCC--HHHHHHHHHHHHHHHHCCCEEECCCEEEE
Q ss_conf 989999999999--------99999999999998083664279811588--67999999999999988943313320220
Q gi|254780933|r 110 GRDAFIEKVWEW--------KKESGGSILSQLKRLGASCDWSRERFTMD--EGMSNAVRNAFVVLYKDGLIYRDKRIVNW 179 (947)
Q Consensus 110 g~~~f~~~~~~~--------~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d--~~y~~~v~~~F~~L~~~gliy~~~~~v~w 179 (947)
.|+.|.+..++. .-.....-.+-.+++|+=+= =|+=+|+- =.=......-|+.+-++||- ..|++.
T Consensus 127 DRe~F~~~M~ei~~pvp~S~~~~~~eEA~~~a~~~GyPvi-VRpAftLGG~GgGiA~n~eEL~~~~~~aL~---~SpI~q 202 (1089)
T TIGR01369 127 DRELFREAMKEIGEPVPKSEIVHSVEEALKAAKEIGYPVI-VRPAFTLGGTGGGIASNEEELKEIVERALS---ASPINQ 202 (1089)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEE-ECCCHHCCCCCCCEECCHHHHHHHHHHHHH---HCCCCE
T ss_conf 2799999999738998811002788999999962689689-810032388998522577899999998863---088855
Q ss_pred CCCCCCCCCHHHHHC---CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 377678014868654---14687669999653045300012455555442456887169998
Q gi|254780933|r 180 DPSLKTSVSDLEVIQ---KEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVS 238 (947)
Q Consensus 180 ~p~~~T~ls~~Ev~~---~~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 238 (947)
|=-.++...==|+|| +|..|.++.|. .-++..|..-.++++++||
T Consensus 203 vL~EkSl~GWKE~EYEVmRD~~dNCItVC--------------NmEN~DPmGVHTGdSIVVA 250 (1089)
T TIGR01369 203 VLVEKSLAGWKEIEYEVMRDSKDNCITVC--------------NMENFDPMGVHTGDSIVVA 250 (1089)
T ss_pred EEEEEECCCCEEEEEEEEEECCCCEEEEE--------------CCCCCCCCCEEECCCEEEC
T ss_conf 75011003317889889862687889997--------------4547689845707833650
No 245
>pfam09508 Lact_bio_phlase Lacto-N-biose phosphorylase. The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (EC:2.4.1.211), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by bifidobacteria is important for human health, especially in pediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides.
Probab=26.27 E-value=20 Score=14.28 Aligned_cols=11 Identities=27% Similarity=0.208 Sum_probs=5.8
Q ss_pred CCCEEEECCCC
Q ss_conf 56536635787
Q gi|254780933|r 773 KQGLLCHAQWP 783 (947)
Q Consensus 773 ~~~si~~~~wP 783 (947)
+.-++-++..|
T Consensus 626 kGR~VY~aGLp 636 (716)
T pfam09508 626 KGRSVYLAGLP 636 (716)
T ss_pred CCCEEEECCCC
T ss_conf 85479964898
No 246
>KOG0616 consensus
Probab=26.18 E-value=34 Score=12.57 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHCCCEEECCCEE
Q ss_conf 9999999999999889433133202
Q gi|254780933|r 153 MSNAVRNAFVVLYKDGLIYRDKRIV 177 (947)
Q Consensus 153 y~~~v~~~F~~L~~~gliy~~~~~v 177 (947)
|.+.|--++.-|+.+++|||+.+|-
T Consensus 149 YAAeivlAleylH~~~iiYRDLKPE 173 (355)
T KOG0616 149 YAAEIVLALEYLHSLDIIYRDLKPE 173 (355)
T ss_pred HHHHHHHHHHHHHHCCEEECCCCHH
T ss_conf 8999999999987467364368877
No 247
>TIGR00998 8a0101 efflux pump membrane protein; InterPro: IPR005694 emrA and emrB confer resistance to carbonylcyanide m-chlorophenylhydrazone, nalidixic acid, and a number of other toxic compounds. EmrB encodes a highly hydrophobic 56.2-kDa peptide, with 14 potential alpha-helices to span the inner membrane. EmrA encodes a putative 42.7-kDa peptide containing a single hydrophobic domain and a large C-terminal hydrophilic domain.; GO: 0015238 drug transporter activity, 0006855 multidrug transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=26.12 E-value=34 Score=12.56 Aligned_cols=17 Identities=6% Similarity=0.423 Sum_probs=6.8
Q ss_pred CCCEEEEEECCEEEEEE
Q ss_conf 88737999289199998
Q gi|254780933|r 858 PDRSIQIILDGMVLFLA 874 (947)
Q Consensus 858 ~~~~~~~v~~~~~~~i~ 874 (947)
|...+=.+++...+|+.
T Consensus 268 ~g~p~ma~V~~~~~yV~ 284 (379)
T TIGR00998 268 PGQPLMAVVPAEQMYVE 284 (379)
T ss_pred CCCCEEEEECCCCEEEE
T ss_conf 89725777845404898
No 248
>COG3110 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.40 E-value=18 Score=14.47 Aligned_cols=14 Identities=36% Similarity=0.297 Sum_probs=10.5
Q ss_pred HHHHHHHHCCCCCC
Q ss_conf 12255431245653
Q gi|254780933|r 589 NGQKMSKSKGNVVD 602 (947)
Q Consensus 589 ~G~KMSKS~GNvid 602 (947)
||+|||+|++-.-+
T Consensus 35 dG~K~SgsLlk~k~ 48 (216)
T COG3110 35 DGKKVSGSLLKGKD 48 (216)
T ss_pred CCCCCCCCCCCCCC
T ss_conf 28645541005741
No 249
>KOG2760 consensus
Probab=25.27 E-value=25 Score=13.49 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=14.6
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCC
Q ss_conf 5677448999999974356667675653663578787
Q gi|254780933|r 749 LLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSL 785 (947)
Q Consensus 749 ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~ 785 (947)
|++|-==--|=|+|.+|+- =|.+..||+.
T Consensus 326 LiSPedl~~ACe~le~l~~--------pl~L~kf~SG 354 (432)
T KOG2760 326 LISPEDLVNACELLEHLGV--------PLRLRKFNSG 354 (432)
T ss_pred CCCHHHHHHHHHHHHHCCC--------CEEEEECCCC
T ss_conf 7897999999998873688--------5289973784
No 250
>pfam04156 IncA IncA protein. Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA.
Probab=25.23 E-value=35 Score=12.45 Aligned_cols=25 Identities=8% Similarity=0.383 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999986
Q gi|254780933|r 921 QAEKERFSKVEKKRISLENSLERIR 945 (947)
Q Consensus 921 ~~er~kl~~~~~~i~~l~~~l~~l~ 945 (947)
+..+..+..+......++..+..++
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~~~ 180 (186)
T pfam04156 156 EELREELERLQENLQRLQEAIQELQ 180 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999989999999998899
No 251
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=25.18 E-value=35 Score=12.44 Aligned_cols=45 Identities=16% Similarity=0.298 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998899999999999999866079236785888999999999999999999999
Q gi|254780933|r 880 DFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLE 938 (947)
Q Consensus 880 D~~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~ 938 (947)
|.+.-+.-+++.++.++.+|+.+++. ++.-++++.+.+.+|.+++
T Consensus 60 ~~~ea~~~v~~R~E~i~~eik~lekq--------------~~~l~~k~~e~~~~i~~~q 104 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQ--------------EEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_conf 19999999999999999999999999--------------9999999999999999874
No 252
>PRK01474 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=25.18 E-value=20 Score=14.17 Aligned_cols=21 Identities=19% Similarity=0.058 Sum_probs=8.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHC
Q ss_conf 499899999999899999832
Q gi|254780933|r 827 NIDAHVRKRLECHKCIIDRLS 847 (947)
Q Consensus 827 ~~~~~~~~~l~~~~~ii~~L~ 847 (947)
.........+..+..+|..|.
T Consensus 27 Pg~eG~~GILp~Haplit~L~ 47 (112)
T PRK01474 27 PGEEGMFGVLPSHVPMIVSLK 47 (112)
T ss_pred ECCCCCCCCCCCCCCEEEEEC
T ss_conf 887507002678611165531
No 253
>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit; InterPro: IPR012684 This entry represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation . In Escherichia coli and some other species, this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (IPR012686 from INTERPRO). In other species such as Pasteurella multocida, these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).; GO: 0008704 5-carboxymethyl-2-hydroxymuconate delta-isomerase activity, 0018800 5-oxopent-3-ene-125-tricarboxylate decarboxylase activity.
Probab=25.17 E-value=35 Score=12.44 Aligned_cols=14 Identities=43% Similarity=0.669 Sum_probs=8.2
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 01234555301245
Q gi|254780933|r 533 ELKTYYPTSVLVTG 546 (947)
Q Consensus 533 e~~~~~P~d~~~~G 546 (947)
+|..--|-|++.||
T Consensus 205 ~~mTL~PgD~ilTG 218 (249)
T TIGR02303 205 EFMTLEPGDVILTG 218 (249)
T ss_pred HCCCCCCCCEEEEC
T ss_conf 10247856488705
No 254
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=25.13 E-value=10 Score=16.34 Aligned_cols=33 Identities=18% Similarity=0.016 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCC--C---CCCCEEEEE
Q ss_conf 998888764333210223222356--6---655324443
Q gi|254780933|r 363 VSLLEKSNLLDKTDSYRHIVPHCE--R---SGVTIEPCI 396 (947)
Q Consensus 363 i~~L~~~g~l~~~~~~~h~~p~c~--R---~~~~i~~~~ 396 (947)
.+.|-+...-+..+...||. ||. | .+.||+|..
T Consensus 41 AQAL~AA~~Tv~~~~~~hSl-H~YFlr~G~~~~Pi~y~V 78 (286)
T PRK10526 41 GQALYAAKETVPEERLVHSF-HSYFLRPGDSKKPIIYDV 78 (286)
T ss_pred HHHHHHHHHHCCCCCCCEEE-EEECCCCCCCCCCEEEEE
T ss_conf 99999999537999871466-665168889999989997
No 255
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=25.03 E-value=35 Score=12.42 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999861
Q gi|254780933|r 918 SILQAEKERFSKVEKKRISLENSLERIRM 946 (947)
Q Consensus 918 ~vv~~er~kl~~~~~~i~~l~~~l~~l~~ 946 (947)
........++.+...+|..|..+|+.+++
T Consensus 42 k~~~~aq~~l~eS~~Ki~lLr~~L~k~~~ 70 (72)
T cd00089 42 KLLAEAEQMLRESKQKLELLKMQLEKLKQ 70 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67999998899899999999999999763
No 256
>pfam10473 Cenp-F_leu_zip Leucine-rich repeats of kinetochore protein Cenp-F/LEK1. Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance.
Probab=24.98 E-value=35 Score=12.41 Aligned_cols=62 Identities=19% Similarity=0.294 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q ss_conf 4549999999889999999999999986607923678588899999999999---9999999999999998
Q gi|254780933|r 877 DFVDFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFS---KVEKKRISLENSLERI 944 (947)
Q Consensus 877 ~~iD~~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~---~~~~~i~~l~~~l~~l 944 (947)
+++++..|+..|.|++...+..+..++.-.+ .|- | -+-++++.+.. +.+.-...|+.+++.|
T Consensus 74 EL~~~rsEkenL~keLq~~q~rvsELe~~ns--s~~-~---LLeekeqe~~q~~ee~k~a~e~Lqtqlkel 138 (140)
T pfam10473 74 DLVTVRSEKENLTKQLQEKQERVSELEKLNS--STE-N---LLEEKEQEKIQMKEESKTAVEMLQTQLKEL 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8998998899899999999988899999887--899-9---999989999989988899999999998762
No 257
>pfam10243 MIP-T3 Microtubule-binding protein MIP-T3. This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved.
Probab=24.96 E-value=35 Score=12.41 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=12.3
Q ss_pred CCCCCCCHHHHHHHHHCCCCC
Q ss_conf 144310001225543124565
Q gi|254780933|r 581 MHALVRDKNGQKMSKSKGNVV 601 (947)
Q Consensus 581 ~hG~vld~~G~KMSKS~GNvi 601 (947)
.|..+.+.+...|||..-|||
T Consensus 302 ~~~~~~~~~~~~~~~~~~~vi 322 (506)
T pfam10243 302 KEIVTVLQDAQGVGKIVSNVI 322 (506)
T ss_pred CCCEECCCCCCCCCCCCEEEE
T ss_conf 531003565544555330011
No 258
>KOG4061 consensus
Probab=24.46 E-value=36 Score=12.35 Aligned_cols=70 Identities=24% Similarity=0.372 Sum_probs=35.0
Q ss_pred HHHHHHHHHCCCCCCHHHHH---CCCCHHHHH---HHHHCCCCCCCCCC--CCCCC-----CCC------CH-HHHHHHH
Q ss_conf 01225543124565302332---025403444---54312335567754--34110-----111------00-0012344
Q gi|254780933|r 588 KNGQKMSKSKGNVVDPIDVI---DQYGADALR---FYFSIMAVQGRDIN--LDLER-----IAG------YR-NFITKFW 647 (947)
Q Consensus 588 ~~G~KMSKS~GNvidp~e~i---~~yGaDalR---~~l~~~~~~~~D~~--fs~~~-----i~~------~r-~f~nKLw 647 (947)
..|.+.|-|..+.+|-.--+ -++|||-+= ++++...+.|.-+. |+.+. ++. +| -++..+|
T Consensus 36 s~g~~l~~~~~a~~d~iIRVDhAGElGAdrIYaGQ~avL~~~~vgpvi~hmWdqEk~Hl~tf~~l~~k~rVrpT~l~P~w 115 (217)
T KOG4061 36 SRGTHLSASRQALLDRIIRVDHAGELGADRIYAGQMAVLQGTSVGPVIKHMWDQEKEHLKTFENLALKHRVRPTVLTPLW 115 (217)
T ss_pred CCCCCCCCHHHHHHHHHHEECCCCCCCCCHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 27861670468888776300444423410332020343258870558999899889999999999997358940331688
Q ss_pred HHHHHHHCCC
Q ss_conf 4333320244
Q gi|254780933|r 648 NAIRFSKMKN 657 (947)
Q Consensus 648 Na~rf~~~~~ 657 (947)
|+.-|+++.+
T Consensus 116 ~vagfalGaG 125 (217)
T KOG4061 116 NVAGFALGAG 125 (217)
T ss_pred HHHHHHHCCC
T ss_conf 8888874243
No 259
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=23.83 E-value=28 Score=13.15 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=9.0
Q ss_pred ECCCEEEECCCCCCC
Q ss_conf 133202203776780
Q gi|254780933|r 172 RDKRIVNWDPSLKTS 186 (947)
Q Consensus 172 ~~~~~v~w~p~~~T~ 186 (947)
+....+.|||.|+--
T Consensus 11 ~~~~~~~wCPGCG~~ 25 (280)
T PRK11867 11 LRDQEPRWCPGCGDG 25 (280)
T ss_pred CCCCCCCCCCCCCCH
T ss_conf 679997168999549
No 260
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor; InterPro: IPR012781 Members of this family belong the lacI helix-turn-helix family of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterised members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.; GO: 0003677 DNA binding, 0006355 regulation of transcription DNA-dependent, 0009750 response to fructose stimulus, 0045449 regulation of transcription.
Probab=23.56 E-value=37 Score=12.23 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=16.2
Q ss_pred CCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCC
Q ss_conf 71699982674010102444444100012311154
Q gi|254780933|r 232 RDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGK 266 (947)
Q Consensus 232 ~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~ 266 (947)
-+.|+|||+-| |+|..|++|-++
T Consensus 117 ~DaLiVAs~~~------------p~~~~Yqkl~n~ 139 (335)
T TIGR02417 117 VDALIVASCLP------------PEDEYYQKLQNE 139 (335)
T ss_pred CCEEEECCCCC------------CCCHHHHHHCCC
T ss_conf 36588438877------------687488983668
No 261
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=23.44 E-value=38 Score=12.21 Aligned_cols=19 Identities=5% Similarity=-0.013 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 5123344888998888764
Q gi|254780933|r 353 LDCFAARSKIVSLLEKSNL 371 (947)
Q Consensus 353 ~~v~~a~~~ii~~L~~~g~ 371 (947)
..-.+..+.+-+.|+++|.
T Consensus 66 ~g~~e~~~E~~~~L~erGa 84 (186)
T COG1751 66 KGTQEMDEEVRKELKERGA 84 (186)
T ss_pred CCCEECCHHHHHHHHHCCC
T ss_conf 8852058999999997086
No 262
>TIGR02636 galM_Leloir galactose mutarotase; InterPro: IPR013458 Galactose mutarotases (D-galactose 1-epimerase) participate in the Leloir pathway for galactose/glucose interconversion. Genes encoding the proteins found in this entry are found clustered with genes encoding other enzymes of the Leloir pathway. These proteins belong to the aldose 1-epimerase family. However, the aldose 1-epimerase itself (5.1.3.3 from EC) has a relatively broad specificity and can utilise D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genomic context of the genes suggests members should act primarily on D-galactose.; GO: 0004034 aldose 1-epimerase activity, 0006012 galactose metabolic process.
Probab=23.41 E-value=38 Score=12.21 Aligned_cols=49 Identities=20% Similarity=0.153 Sum_probs=34.6
Q ss_pred HHHHHHHHCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 2444444100012311154233202486573210000342122320321
Q gi|254780933|r 248 DVAIAVHPDDYRYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKV 296 (947)
Q Consensus 248 ~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~ipi~~~~~V~~~~GTG~V~~ 296 (947)
+.+..|||-.-.|=-|-|.....++.+.++.|.++.|+=.|.+|||+..
T Consensus 159 Dk~Tp~NlTNHvYFNL~g~~~~~d~~~H~L~lnAd~yLP~D~~tgIP~G 207 (346)
T TIGR02636 159 DKATPVNLTNHVYFNLDGAEAGSDVLSHELQLNADRYLPLDEETGIPLG 207 (346)
T ss_pred CCCCCCCCCCCEEECCCCCCCCCCHHHCEEEEECCCCCCCCCCCCCCCC
T ss_conf 7657658873301126877256864265268864843012574346456
No 263
>pfam04437 RINT1_TIP1 RINT-1 / TIP-1 family. This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control, as well as the TIP-1 protein from yeast that seems to be involved in a complex with Sec20p that is required for golgi transport.
Probab=23.33 E-value=38 Score=12.20 Aligned_cols=28 Identities=4% Similarity=0.061 Sum_probs=17.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHCCCCHHHH
Q ss_conf 0122554312456530233202540344
Q gi|254780933|r 588 KNGQKMSKSKGNVVDPIDVIDQYGADAL 615 (947)
Q Consensus 588 ~~G~KMSKS~GNvidp~e~i~~yGaDal 615 (947)
....++++..|++--....++..|-|.+
T Consensus 242 ~~l~~~~~~lnsa~yi~~~L~eWs~~v~ 269 (485)
T pfam04437 242 AELERTCRKLNAANYLESKLKDWSDDVF 269 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 2399999998359999999998557763
No 264
>PRK13794 hypothetical protein; Provisional
Probab=23.27 E-value=38 Score=12.19 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.2
Q ss_pred EEECCCEEEECCCCCCCCC
Q ss_conf 3313320220377678014
Q gi|254780933|r 170 IYRDKRIVNWDPSLKTSVS 188 (947)
Q Consensus 170 iy~~~~~v~w~p~~~T~ls 188 (947)
.|-|+-..+||..|+.||=
T Consensus 3 ~~lgk~~l~WC~~CNvPll 21 (473)
T PRK13794 3 TYLGKIHLKWCDNCNTPVL 21 (473)
T ss_pred CEEEEEEEEECCCCCCCCC
T ss_conf 4560168888477897114
No 265
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=23.23 E-value=38 Score=12.19 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 9999889999999999999986607923
Q gi|254780933|r 883 KERSRLKKSLEKVLDELSSIKKKLENNQ 910 (947)
Q Consensus 883 ~e~~rl~K~l~~l~~~i~~~~~kL~N~~ 910 (947)
.++.+|+++++.++++++.+++.|+++-
T Consensus 415 ~e~~kL~~E~~~l~~ei~~l~~~l~~~~ 442 (445)
T smart00434 415 LEVEKLEKELKELEKEIEDLEKILASEL 442 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 8999999999999999999984686965
No 266
>pfam00521 DNA_topoisoIV DNA gyrase/topoisomerase IV, subunit A.
Probab=23.19 E-value=38 Score=12.18 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 9999988999999999999998660792
Q gi|254780933|r 882 VKERSRLKKSLEKVLDELSSIKKKLENN 909 (947)
Q Consensus 882 ~~e~~rl~K~l~~l~~~i~~~~~kL~N~ 909 (947)
..++.+|+++++.++++++.+++.|+++
T Consensus 392 ~~e~~kL~~e~~~l~~ei~~l~~~l~s~ 419 (428)
T pfam00521 392 KEEIEKLEKEIEELEKEIAELEKILASE 419 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 8899999999999999999999773899
No 267
>KOG1962 consensus
Probab=23.17 E-value=38 Score=12.18 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780933|r 930 VEKKRISLENSLER 943 (947)
Q Consensus 930 ~~~~i~~l~~~l~~ 943 (947)
+.++-++|++++.+
T Consensus 198 Llee~~~Lq~~i~~ 211 (216)
T KOG1962 198 LLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 98999999999845
No 268
>KOG3361 consensus
Probab=23.12 E-value=31 Score=12.81 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=21.1
Q ss_pred CCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCC
Q ss_conf 00342122320321247785565664304653111016777521366
Q gi|254780933|r 283 VYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSE 329 (947)
Q Consensus 283 ~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~ 329 (947)
+--++..|||+| .+||+|- . . +|. --++++|.+....
T Consensus 47 dK~dpnVGtGlV-GAPACGD--V---M--kLq--Ikvd~~g~I~dak 83 (157)
T KOG3361 47 DKNDPNVGTGLV-GAPACGD--V---M--KLQ--IKVDDSGVIEDAK 83 (157)
T ss_pred CCCCCCCCCCCC-CCCCCCC--E---E--EEE--EEECCCCCEEEEE
T ss_conf 789997655553-5765220--0---0--488--8977998288766
No 269
>pfam10520 Kua-UEV1_localn Kua-ubiquitin conjugating enzyme hybrid localisation domain. This domain is part of the transcript of the fusion of two genes, the UEV1, an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localize to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes.
Probab=23.08 E-value=25 Score=13.52 Aligned_cols=14 Identities=36% Similarity=0.619 Sum_probs=9.9
Q ss_pred CCCCCCCCCEEEEC
Q ss_conf 03421223203212
Q gi|254780933|r 284 YPDPEFGDGAVKVT 297 (947)
Q Consensus 284 ~V~~~~GTG~V~~~ 297 (947)
|+..|+|||+||-.
T Consensus 1 y~lADf~SGvvHW~ 14 (178)
T pfam10520 1 YLLADFGSGLVHWA 14 (178)
T ss_pred CCHHHHHCCCEEEE
T ss_conf 90168532410233
No 270
>TIGR01057 topA_arch DNA topoisomerase I; InterPro: IPR005739 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry describes topoisomerase I from archaea, which is more closely related to bacterial than to eukaryotic topoisomerase I . Topoisomerase I is the major enzyme for relaxing negatively supercoiled DNA, and its presence is balanced by reverse gyrase, which can introduce negative supercoils. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=22.98 E-value=38 Score=12.15 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q ss_conf 78989999999999999998
Q gi|254780933|r 789 DSESIEEVNWIIDLISKVRS 808 (947)
Q Consensus 789 d~~~~~~~~~~~~ii~~iR~ 808 (947)
++++..+||..++-|...|-
T Consensus 541 ~~~LTR~fE~~lE~I~~Gr~ 560 (637)
T TIGR01057 541 SEELTREFEKKLEDIMSGRI 560 (637)
T ss_pred CHHHHHHHHHHHHHHHCCCC
T ss_conf 81323899999888750786
No 271
>COG4905 Predicted membrane protein [Function unknown]
Probab=22.75 E-value=39 Score=12.12 Aligned_cols=10 Identities=20% Similarity=0.823 Sum_probs=4.6
Q ss_pred HCCCCCCCHH
Q ss_conf 0345677448
Q gi|254780933|r 746 VCKLLHPIIP 755 (947)
Q Consensus 746 ~l~ll~P~~P 755 (947)
+++.+||...
T Consensus 123 lv~~ihPlv~ 132 (243)
T COG4905 123 LVQTIHPLVS 132 (243)
T ss_pred HHHHHCCCHH
T ss_conf 9997173012
No 272
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=22.44 E-value=39 Score=12.10 Aligned_cols=19 Identities=21% Similarity=0.552 Sum_probs=15.4
Q ss_pred HHHHHHCCCCCCCCCC-CCC
Q ss_conf 9987670898356778-815
Q gi|254780933|r 66 MIRFERMRGKNVLWQP-GTD 84 (947)
Q Consensus 66 ~~Ry~rm~G~~Vl~~~-G~D 84 (947)
+||+-||.||++.+.- +-|
T Consensus 18 LARwLRllGydt~~~~~~~d 37 (165)
T COG1656 18 LARWLRLLGYDTVYSSNESD 37 (165)
T ss_pred HHHHHHHCCCCEEEECCCCC
T ss_conf 99999980884254236783
No 273
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=22.43 E-value=23 Score=13.74 Aligned_cols=16 Identities=19% Similarity=0.023 Sum_probs=10.6
Q ss_pred EECCCEEEECCCCCCC
Q ss_conf 3133202203776780
Q gi|254780933|r 171 YRDKRIVNWDPSLKTS 186 (947)
Q Consensus 171 y~~~~~v~w~p~~~T~ 186 (947)
-.+.-|..|||.|+--
T Consensus 10 r~~~~P~~wCpGCG~g 25 (281)
T PRK09628 10 RVDKMPTLWCWGCGDG 25 (281)
T ss_pred CCCCCCCCCCCCCCCH
T ss_conf 3568998878899768
No 274
>pfam06844 DUF1244 Protein of unknown function (DUF1244). This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=21.72 E-value=40 Score=11.98 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=18.3
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 45777653100136889864765
Q gi|254780933|r 701 SAVLYRFVWDELCDWYVEFIKSI 723 (947)
Q Consensus 701 ~~~i~~F~~~~~~~~Yie~~K~~ 723 (947)
++.+-.|+.|-|++||.+....+
T Consensus 6 lMnLaGFCRNCLskWy~~aa~~~ 28 (68)
T pfam06844 6 LMNLAGFCRNCLSKWYREAAEER 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99998788998999999999986
No 275
>pfam05700 BCAS2 Breast carcinoma amplified sequence 2 (BCAS2). This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins. BCAS2 is a putative spliceosome associated protein.
Probab=21.37 E-value=41 Score=11.93 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998899999999999999866
Q gi|254780933|r 881 FVKERSRLKKSLEKVLDELSSIKKK 905 (947)
Q Consensus 881 ~~~e~~rl~K~l~~l~~~i~~~~~k 905 (947)
++..+.+++|+++.+.++|..++.+
T Consensus 141 Le~~l~~lekel~~~k~~ie~VN~~ 165 (221)
T pfam05700 141 LEALLKRLQKELAELKEEIEEVNRQ 165 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999
No 276
>KOG0450 consensus
Probab=21.15 E-value=41 Score=11.90 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=14.2
Q ss_pred HHHHHHHCCCCCC--CCCCCC
Q ss_conf 9998767089835--677881
Q gi|254780933|r 65 IMIRFERMRGKNV--LWQPGT 83 (947)
Q Consensus 65 i~~Ry~rm~G~~V--l~~~G~ 83 (947)
.++|-+..+|+++ |-|.|-
T Consensus 133 lLiRaYQirGH~~A~LDPLGi 153 (1017)
T KOG0450 133 LLIRAYQIRGHHKAKLDPLGI 153 (1017)
T ss_pred HHHHHHHHCCCCCCCCCCCCC
T ss_conf 999999854640104786456
No 277
>pfam12252 SidE Dot/Icm substrate protein. This family of proteins is found in bacteria. Proteins in this family are typically between 397 and 1543 amino acids in length. This family is the SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=20.79 E-value=42 Score=11.85 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9988899875310010245777653
Q gi|254780933|r 684 VINDVTVGMENHRFNDVSAVLYRFV 708 (947)
Q Consensus 684 ~i~~v~~~~e~~~f~~a~~~i~~F~ 708 (947)
...+|.+++++-+...|+.++-+.-
T Consensus 1036 aL~qCqdALeKQni~~AL~AL~~ip 1060 (1443)
T pfam12252 1036 ALTQCQDALEKQNIAGALEALKKIP 1060 (1443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999998512799999985499
No 278
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=20.74 E-value=42 Score=11.84 Aligned_cols=14 Identities=14% Similarity=0.470 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999998889987
Q gi|254780933|r 679 KRLATVINDVTVGM 692 (947)
Q Consensus 679 s~l~~~i~~v~~~~ 692 (947)
+.||...+.+...+
T Consensus 206 s~LN~hL~~~M~GL 219 (391)
T smart00435 206 SKLNKHLKELMPGL 219 (391)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 99988799755675
No 279
>KOG0981 consensus
Probab=20.74 E-value=42 Score=11.84 Aligned_cols=20 Identities=10% Similarity=0.260 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 55677999999998889987
Q gi|254780933|r 673 VNKWIIKRLATVINDVTVGM 692 (947)
Q Consensus 673 ~Drwils~l~~~i~~v~~~~ 692 (947)
+||-=-+.||..++.....+
T Consensus 559 FDrLdt~~LN~hL~~lM~GL 578 (759)
T KOG0981 559 FDRLDTSSLNKHLQELMDGL 578 (759)
T ss_pred HHHHCHHHHHHHHHHHHCCC
T ss_conf 55405487899999985310
No 280
>pfam08744 NOZZLE Plant transcription factor NOZZLE. NOZZLE is a transcription factor that plays a role in patterning the proximal-distal and adaxial-abaxial axes.
Probab=20.72 E-value=42 Score=11.84 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=5.4
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 001512334488899
Q gi|254780933|r 350 FEGLDCFAARSKIVS 364 (947)
Q Consensus 350 ~~G~~v~~a~~~ii~ 364 (947)
..||.|......+++
T Consensus 62 lRGMGVAkLER~r~E 76 (333)
T pfam08744 62 LRGMGVAKLERFIAE 76 (333)
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 444108889899889
No 281
>pfam09735 Nckap1 Membrane-associated apoptosis protein. Expression of this protein was found to be markedly reduced in patients with Alzheimer's disease. It is involved in the regulation of actin polymerisation in the brain as part of a WAVE2 signalling complex.
Probab=20.49 E-value=43 Score=11.80 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=11.2
Q ss_pred HHHHHCCCCCCHHHHHCCCCH
Q ss_conf 554312456530233202540
Q gi|254780933|r 592 KMSKSKGNVVDPIDVIDQYGA 612 (947)
Q Consensus 592 KMSKS~GNvidp~e~i~~yGa 612 (947)
+|+|-.-|++. .+.+++|.
T Consensus 601 emak~~~~ii~--~i~se~~~ 619 (1118)
T pfam09735 601 EMAKQLENLIN--ILCSEQGN 619 (1118)
T ss_pred HHHHHHHHHHH--HHHHHHHH
T ss_conf 99999999999--99999986
No 282
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.46 E-value=43 Score=11.80 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999999861
Q gi|254780933|r 932 KKRISLENSLERIRM 946 (947)
Q Consensus 932 ~~i~~l~~~l~~l~~ 946 (947)
.++..|++.+..|++
T Consensus 271 ~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 271 KEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999999
No 283
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein; InterPro: IPR005696 Bacteriocins are antibacterial proteinaceous compounds produced by bacteria. In Gram-positive bacteria, they are divided into four classes. Within the class II, constituted by non-modified peptides produced mainly by lactic acid bacteria, bacteriocins of the subclass IIa, such as mesentericin Y105, are of particular interest. They are active against the foodborne pathogen Listeria monocytogenes and share a similar primary structure, with a conserved N-terminal motif (YGNGV). Subclass IIa bacteriocins induce membrane permeabilization of sensitive strains, but their target specificity and their molecular mode of action remain elusive. This family of proteins is involved in the secretion of such bacteriocins although the mechanism of this process is not well understood. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=20.18 E-value=43 Score=11.76 Aligned_cols=65 Identities=15% Similarity=0.280 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998899999999999999866079236785888999999999999999999999999998
Q gi|254780933|r 880 DFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERI 944 (947)
Q Consensus 880 D~~~e~~rl~K~l~~l~~~i~~~~~kL~N~~Fv~kAP~~vv~~er~kl~~~~~~i~~l~~~l~~l 944 (947)
+++..+.-|++.++..+.+..++.+-=..++..+.-=..+-....+.|+....++..++..|..+
T Consensus 258 ~~~~QId~L~~~~~~y~~Q~a~~~~~~~s~~~~~s~~~k~~~LK~Q~L~~~~~~~~~~~q~l~~~ 322 (476)
T TIGR01000 258 TIQQQIDQLKKSIASYQVQKAGLTKSDASKNYASSQSSKLAQLKEQQLAKVKQELTDLNQKLLEL 322 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 48865999999988764444202477875212245248888789888999999999999879998
No 284
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=20.10 E-value=42 Score=11.88 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=10.5
Q ss_pred EECCCEEEECCCCCCC
Q ss_conf 3133202203776780
Q gi|254780933|r 171 YRDKRIVNWDPSLKTS 186 (947)
Q Consensus 171 y~~~~~v~w~p~~~T~ 186 (947)
.....|..|||.|+-.
T Consensus 12 ~~~~~p~~wCpGCG~~ 27 (306)
T PRK05778 12 RYDGLPTTWCPGCGNF 27 (306)
T ss_pred CCCCCCCCCCCCCCCH
T ss_conf 1689977658999858
Done!