RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(947 letters)
>gnl|CDD|180225 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 1317 bits (3410), Expect = 0.0
Identities = 448/951 (47%), Positives = 608/951 (63%), Gaps = 86/951 (9%)
Query: 1 MMIDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNT 60
M + KTYD +E K +KW F+ D K F I +PPPNVTGSLHMGHA N
Sbjct: 3 MELPKTYDPKEVEAKWYQKWEEKGYFKPDDNSK---KPFSIVIPPPNVTGSLHMGHALNN 59
Query: 61 TIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWE 120
T+QDI+IR++RM+G N LW PGTDHAGIATQ+ VE +L A+ +R D+GR+ F+EKVWE
Sbjct: 60 TLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEG-KSRHDLGREKFLEKVWE 118
Query: 121 WKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWD 180
WK+ESGG+I +QL+RLGASCDWSRERFTMDEG+S AVR FV LY+ GLIYR KR+VNWD
Sbjct: 119 WKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWD 178
Query: 181 PSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTT 240
P L+T++SDLEV KEV G LW++RYPL +G DY++V+TT
Sbjct: 179 PKLQTALSDLEVEYKEVKGKLWHIRYPLADG--------------------SDYLVVATT 218
Query: 241 RPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAH 300
RPETM GD A+AV+P+D RYK LIGK LP+VGR IPI++D Y DPEFG GAVK+TPAH
Sbjct: 219 RPETMLGDTAVAVNPEDERYKHLIGKTVILPLVGREIPIIADEYVDPEFGTGAVKITPAH 278
Query: 301 DFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARS 360
D NDFE+ KRH L INI+ + I NE+ E++GLD F AR
Sbjct: 279 DPNDFEVGKRHNLPMINIMDEDGTI----NENPG--------------EYQGLDRFEARK 320
Query: 361 KIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCL 420
IV+ LE+ LL K + + H V H +RSGV IEP +++QW++ K LA+ A+ + +NG +
Sbjct: 321 AIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEI 380
Query: 421 SFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYY 480
F+P+ W+K+Y+ W+ENIQ WCISRQ+WWGH+IP WY DG+++V E A A
Sbjct: 381 KFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDEDGEVYVGREEPEAREKA---- 436
Query: 481 LSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPT 540
LL +DEDVLDTWFSSALWPF++LGWPE+T +LK +YPT
Sbjct: 437 ----------------------LLTQDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYPT 474
Query: 541 SVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNV 600
SVLVTGFDI+FFWVARM+MMGL+F PF VY+H LVRD+ G+KMSKSKGNV
Sbjct: 475 SVLVTGFDIIFFWVARMIMMGLHFTGQV------PFKDVYIHGLVRDEQGRKMSKSKGNV 528
Query: 601 VDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARH 660
+DP+D+ID+YGADALRF + +A GRDI D ER+ GYRNF K WNA RF M
Sbjct: 529 IDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGA 588
Query: 661 SVSFVPQDVKW-IVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEF 719
V +P + + ++WI+ RL + +VT ++ +RF++ + LY F+W+E CDWY+E
Sbjct: 589 DVGELPDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLEL 648
Query: 720 IKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCH 779
K +L + T + +YVL + +LLHP +PF+TE+L+ ++P + + +
Sbjct: 649 AKPVLQEAAKR---ATRATLAYVLEQILRLLHPFMPFITEELWQKLAP---LGIEESIML 702
Query: 780 AQWPSLIID-DSESIEEVNWIIDLISKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLEC 838
A WP D + E W+ +LI+ +R+IR EMN+P +PL+ DA R RLE
Sbjct: 703 APWPEADEAIDEAAEAEFEWLKELITAIRNIRAEMNIPPSKKLPLLLKGADAEDRARLEA 762
Query: 839 HKCIIDRLSSGNII----FADCPPDRSIQIILDGMVLFLAIGDFVDFVKERSRLKKSLEK 894
++ I RL+ + + P+ + ++ G LFL + +D E +RL+K L K
Sbjct: 763 NEAYIKRLARLESLEILADDEEAPEGAASAVVGGAELFLPLEGLIDVEAELARLEKELAK 822
Query: 895 VLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIR 945
+ E+ ++KKL N FV KAP +++ E+E+ ++ E+K L+ L R++
Sbjct: 823 LEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARLK 873
>gnl|CDD|161872 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase.
Length = 861
Score = 969 bits (2507), Expect = 0.0
Identities = 394/929 (42%), Positives = 563/929 (60%), Gaps = 77/929 (8%)
Query: 5 KTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQD 64
K YD +E+K +KW F+ D FCI +PPPNVTGSLH+GHA N +IQD
Sbjct: 3 KDYDPHEVEKKWYKKWEKSGFFKPDGNSNKPP--FCIDIPPPNVTGSLHIGHALNWSIQD 60
Query: 65 IMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKE 124
I+ R++RM+G NVLW PGTDHAGIATQ+ VE +L A+ T+ D+GR+ F EK+WEWK+E
Sbjct: 61 IIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGK-TKHDLGREEFREKIWEWKEE 119
Query: 125 SGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLK 184
SGG+I +Q+KRLGAS DWSRERFTMDEG+S AV+ AFV LY+ GLIYR + +VNWDP L
Sbjct: 120 SGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLN 179
Query: 185 TSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPET 244
T++SD+EV KEV G L+Y+RYPL + +K DY++V+TTRPET
Sbjct: 180 TAISDIEVEYKEVKGKLYYIRYPL------------ANGSK-------DYLVVATTRPET 220
Query: 245 MFGDVAIAVHPDDYRYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFND 304
MFGD A+AVHP+D RYK LIGK LP+ GR IPI++D Y D EFG GAVKVTPAHDFND
Sbjct: 221 MFGDTAVAVHPEDERYKHLIGKKVILPLTGRKIPIIADEYVDMEFGTGAVKVTPAHDFND 280
Query: 305 FEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVS 364
+E KRH L FINIL E+ +L++ A +++GL F AR KIV
Sbjct: 281 YEWGKRHNLEFINILD--------------EDGLLNENA----GKYQGLTRFEARKKIVE 322
Query: 365 LLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIP 424
L++ LL K + + H V C RSG +EP +++QW++ + LA+ A+ +A+ G + F+P
Sbjct: 323 DLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVP 382
Query: 425 QSWDKSYYEWLENIQPWCISRQIWWGHQIPVWY-SPDGKLFVENTEDAALRSAIDYYLSQ 483
+ +K Y WL NI+ WCISRQ+ WGH+IPVWY G+++V E
Sbjct: 383 KRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPL------------ 430
Query: 484 DNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTSVL 543
G + L++D DVLDTWFSS+LWPF++LGWP++T +LK +YPT +L
Sbjct: 431 -------PDDKTNTGPSVE-LEQDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLL 482
Query: 544 VTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDP 603
VTG+DI+FFWVARM+ L PF VY+H LVRD+ G+KMSKS GNV+DP
Sbjct: 483 VTGYDIIFFWVARMIFRSLALTGQV------PFKEVYIHGLVRDEQGRKMSKSLGNVIDP 536
Query: 604 IDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSVS 663
+DVI++YGADALRF + + G DIN D +R+ RNF+ K WNA RF M +
Sbjct: 537 LDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLEL 596
Query: 664 FVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSI 723
++ + ++WI+ +L I +V ++ +RF + + LY F+W++ CDWY+E +K
Sbjct: 597 SGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYR 656
Query: 724 LNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWP 783
L + YVL +LLHP +PF+TE+++ H D + +P
Sbjct: 657 LYNGNEAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEGADS-----IMLQSYP 711
Query: 784 SLI--IDDSESIEEVNWIIDLISKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLECHKC 841
+ D E+ + + ++I +R+++ E N+P A + ++ +A +RL+ +
Sbjct: 712 VVDAEFVDEEAEKAFELLKEIIVSIRNLKAESNIPPNAPLKVLLIYTEAETAERLKLNAV 771
Query: 842 IIDRLSSGNIIF--ADCPPDRS-IQIILDGMVLFLAIGDFVDFVKERSRLKKSLEKVLDE 898
I + + + + P + ++ G + + + ++ KE +RL+K L+K E
Sbjct: 772 DIKGAINFSEVEVVIEKPEVTEAVVELVPGFEIIIPVKGLINKAKELARLQKQLDKEKKE 831
Query: 899 LSSIKKKLENNQFVEKAPPSILQAEKERF 927
+ I+ KLEN FV+KAP +++ EKE+
Sbjct: 832 VIRIEGKLENEGFVKKAPKEVIEKEKEKL 860
>gnl|CDD|185605 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 861 bits (2226), Expect = 0.0
Identities = 388/1035 (37%), Positives = 556/1035 (53%), Gaps = 159/1035 (15%)
Query: 5 KTYDFAFIEQKSVEKWNSVDAFRI--DVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTI 62
+YD +E E W F+ D F I +PPPNVTG LH+GHA I
Sbjct: 26 ASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAI 85
Query: 63 QDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWK 122
QD +IR+ RM+G LW PGTDHAGIATQ+ VE +L + + TR D+GR+ F++KVWEWK
Sbjct: 86 QDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWK 145
Query: 123 KESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPS 182
+ G +I +QL+RLG+S DWSRE FTMDE S AV+ AFV LY+DGLIYRD R+VNW
Sbjct: 146 DKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCY 205
Query: 183 LKTSVSDLEVIQKEVD----------------GNLWYVRYPLVEGVTYRHPIKFDDDAKP 226
LKT++SD+EV +E++ G LW+ YPL +
Sbjct: 206 LKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQ------------- 252
Query: 227 IDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLP-IVGRLIPIVSD-VY 284
+ I+V+TTR ETM GDVA+AVHP D RYK+L GK P I R IPI++D
Sbjct: 253 ------EEIVVATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKIPIIADDEL 306
Query: 285 PDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEAR 344
D EFG GAVK+TPAHD ND+EIAKRH L FINI T + KI +EN
Sbjct: 307 VDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKI--NEN-------------- 350
Query: 345 NIFSEFEGLDCFAARSKIVSLLEKSNLL-DKTDSYRHIVPHCERSGVTIEPCITEQWYLD 403
EF G+ F R KI L++ LL DK +P C RSG +EP + QWY++
Sbjct: 351 --GGEFAGMHRFDCRRKIEEELKEMGLLRDKVP-NPMRLPRCSRSGDIVEPMLIPQWYVN 407
Query: 404 AKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVW------- 456
K +A+ A+ + +NG L IP S + +Y WLENIQ WCISRQ+WWGH+IP +
Sbjct: 408 CKDMAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGP 467
Query: 457 -YSPDG--KLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDT 513
P V +E+ AL A + + D L++DEDVLDT
Sbjct: 468 ETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFE---------------LEQDEDVLDT 512
Query: 514 WFSSALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGI 573
WFSS L+PF++LGWP+QT +L+ ++PTS+L TG DILFFWVARM+MM L+
Sbjct: 513 WFSSGLFPFSTLGWPDQTDDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKL----- 567
Query: 574 EPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVID------------------------- 608
PF V++HA+VRD G+KMSKSKGNV+DP++VI+
Sbjct: 568 -PFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAI 626
Query: 609 ------------QYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMK 656
+ G DALRF QGR+INLD+ R+ GYR+F K WNA++F+ MK
Sbjct: 627 ELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMK 686
Query: 657 --NARHSVSFV------PQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFV 708
+ + + + W +KWI+ RL I +VT G + + F++ + Y F
Sbjct: 687 LLKDFNLPNSTLFKPNNVESLPWE-DKWILHRLNVAIKEVTEGFKEYDFSEATQATYNFW 745
Query: 709 WDELCDWYVEFIKSILN----QKDSELVSETLS-CFSYVLYNVCKLLHPIIPFVTEDLYS 763
ELCD Y+E IK L+ + + + L L +LLHP++PF+TE+LY
Sbjct: 746 LYELCDVYLELIKPRLSKQSDGERKQHAQDVLHTVLDIGL----RLLHPMMPFITEELYQ 801
Query: 764 HVSPQDDMDKQGLLCHAQWP--SLIIDDSESIEEVNWIIDLISKVRSIRTEMNVPLKAVV 821
+ P K + A++P + ++ EE+ I+ ++ +RS+ + +P K
Sbjct: 802 RL-PNYL-RKSESISIAKYPQPNPGWNNEALDEEMKIIMSIVKSIRSLIATLGIPNK-TK 858
Query: 822 PLVF-ANIDAHVRKRLECHKCIID---RLSSGNIIFADCP----PDRSIQIILDG-MVLF 872
P + DA + + +E + +I ++ S ++I P ++D ++++
Sbjct: 859 PDCYVTAKDAELIELIESAENLISTLAKIGSVSVIPPIEEEAEVPKGCGFDVVDNKVIIY 918
Query: 873 LAIGDFVDFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEK 932
L + +F+D KE ++L+K L K+ L S KK+ + +K P + + E+ ++ +
Sbjct: 919 LNLDEFIDLKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNE 978
Query: 933 KRISLENSLERIRML 947
+ LE ++E ++ L
Sbjct: 979 EIKQLEQAIEELKSL 993
>gnl|CDD|184893 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 843 bits (2178), Expect = 0.0
Identities = 390/960 (40%), Positives = 541/960 (56%), Gaps = 93/960 (9%)
Query: 5 KTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQD 64
K Y+ +E + W F D + F I +PPPNVTGSLH+GHA T+QD
Sbjct: 17 KGYEHREVEARWYPFWQERGYFHGDEHDR-TRPPFSIVLPPPNVTGSLHLGHALTATLQD 75
Query: 65 IMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKE 124
++IR++RM G N LW PGTDHAGIATQ+ VE L +R D+GR+AF+E+VW WK++
Sbjct: 76 VLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQ 135
Query: 125 SGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLK 184
G I Q K LGAS DW RERFTMDEG+S AVR FV L+++GLIYR+K+++NW P +
Sbjct: 136 YGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCR 195
Query: 185 TSVSDLEVIQKEV-DGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPE 243
T++SDLEV +E G LW YPL +G I+V+TTRPE
Sbjct: 196 TALSDLEVEHEEAHQGELWSFAYPLADGSG--------------------EIVVATTRPE 235
Query: 244 TMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLIPIVSD-VYPDPEFGDGAVKVTPAHDF 302
TM GD A+AVHP D RY L GK PI GR PIV+D + DP+FG GAVKVTPAHDF
Sbjct: 236 TMLGDTAVAVHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKFGTGAVKVTPAHDF 295
Query: 303 NDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKI 362
NDFE+ KRHGL I ++ P+ + ++ EA GLD F AR ++
Sbjct: 296 NDFEVGKRHGLEMITVIGPDGR--------------MTAEA----GPLAGLDRFEARKEV 337
Query: 363 VSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSF 422
LL + L + + C+RS +EP +++QWY+ + LA AI + + G F
Sbjct: 338 KRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRTRF 397
Query: 423 IPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLS 482
IP+ W +Y W+ NI WCISRQ+WWGHQIP WY PDG + V A + L
Sbjct: 398 IPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPDGHVTVARETPEACSTCGKAELR 457
Query: 483 QDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTSV 542
Q DEDVLDTWFSS LWPF+++GWPEQT L+T+YPTSV
Sbjct: 458 Q-----------------------DEDVLDTWFSSGLWPFSTMGWPEQTDTLRTFYPTSV 494
Query: 543 LVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVD 602
+ TG DI+FFWVARMMMMGL+FM + PF VY+H +VRD+ GQKMSK+KGNV+D
Sbjct: 495 METGHDIIFFWVARMMMMGLHFMGEV------PFRTVYLHPMVRDEKGQKMSKTKGNVID 548
Query: 603 PIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSV 662
P+ + +QYGADALRF + + QGRDI L ERI GYR F K WNA RF+ M + +
Sbjct: 549 PLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGYQE 608
Query: 663 SFVP--QDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFI 720
+ + ++WI+ RL +N+ +E RFND + +Y FVW ELCDWY+E
Sbjct: 609 RGEDPARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELA 668
Query: 721 KSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLY----SHVSPQDDMDKQGL 776
K L +D E + + L +LLHP +PF+TE+L+ + V D
Sbjct: 669 KEALASEDPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGASAWADS--- 725
Query: 777 LCHAQWPSLIIDDSESIEEVNWIIDLISKVRSIRTEMNVPLKAVV----PLVFANIDAHV 832
+ A++P D + ++ +I VR+IR EM +P K + P+ A D +
Sbjct: 726 VLAAEYPRKGEADEAAEAAFRPVLGIIDAVRNIRGEMGIPWKVKLGAQAPVEIAVADPAL 785
Query: 833 RKRLE------CHKCIIDRLSSGNIIF--ADCPPDRSIQIILDGMVLFLAIGDFVDFVKE 884
R L+ H+ + + ++ A P +S + G + + + +D E
Sbjct: 786 RDLLQAGELARVHR--VAGVEGSRLVVAAATAPAPQSAVGVGPGFEVRVPLAGVIDLAAE 843
Query: 885 RSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERI 944
+R+ K + KV +L+ +++KL+N FV+ APP++++ ++ R ++ +KR LE +
Sbjct: 844 TARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARAEELREKRGKLEAHRAML 903
>gnl|CDD|166584 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 740 bits (1911), Expect = 0.0
Identities = 381/974 (39%), Positives = 561/974 (57%), Gaps = 117/974 (12%)
Query: 1 MMIDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNT 60
K++DF E++ W S F+ + G F I MPPPNVTGSLHMGHA
Sbjct: 55 PETAKSFDFTS-EERIYNWWESQGYFKPNF--DRGGDPFVIPMPPPNVTGSLHMGHAMFV 111
Query: 61 TIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWE 120
T++DIM+R+ RM+G+ LW PGTDHAGIATQ+ VE ++ A + R D+GRD F ++VWE
Sbjct: 112 TLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVE-KMLASEGIKRTDLGRDEFTKRVWE 170
Query: 121 WKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWD 180
WK++ GG+I +Q+KRLGASCDWSRERFT+DE +S AV AFV L++ GLIY+ +VNW
Sbjct: 171 WKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWS 230
Query: 181 PSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTT 240
P+L+T+VSDLEV E G L+Y++Y + G D++ ++TT
Sbjct: 231 PNLQTAVSDLEVEYSEEPGTLYYIKYRVAGGSE-------------------DFLTIATT 271
Query: 241 RPETMFGDVAIAVHPDDYRYKELIGKYATLPIV-GRLIPIVSDVYPDPEFGDGAVKVTPA 299
RPET+FGDVAIAV+P+D RY + IGK A +P+ GR +PI++D Y D +FG G +K++P
Sbjct: 272 RPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLKISPG 331
Query: 300 HDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAAR 359
HD ND+ +A++ GL +N++ + + +E GL F AR
Sbjct: 332 HDHNDYLLARKLGLPILNVMNKDGTL----------------------NEVAGLYWFEAR 369
Query: 360 SKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGC 419
K+ S LE++ L K + + VP +R G IEP +++QW++ + LAE A+++ +NG
Sbjct: 370 EKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGE 429
Query: 420 LSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWY----SPDGKLFVENTEDAALRS 475
L+ IP+ ++K Y WL NI+ WCISRQ+WWGH+IPVWY + V + + AL
Sbjct: 430 LTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEALEK 489
Query: 476 AIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAE-L 534
A + Y +D ++ +D DVLDTWFSSALWPF++LGWP+ +AE
Sbjct: 490 AREKY-GKDVEIY-----------------QDPDVLDTWFSSALWPFSTLGWPDVSAEDF 531
Query: 535 KTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMS 594
K +YPT+VL TG DILFFWVARM+MMG+ F G PF VY+H L+RD G+KMS
Sbjct: 532 KKFYPTTVLETGHDILFFWVARMVMMGIEF------TGTVPFSYVYLHGLIRDSQGRKMS 585
Query: 595 KSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRF-- 652
K+ GNV+DP+D I ++G DALRF + + G+D+NL ER+ + F K WNA +F
Sbjct: 586 KTLGNVIDPLDTIKEFGTDALRFTLA-LGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVL 644
Query: 653 ---------SKMKNARH-------SVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHR 696
S ++ S+ +P W+V+K L +I+ VT + +
Sbjct: 645 QNLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVSK-----LHELIDSVTTSYDKYF 699
Query: 697 FNDVSAVLYRFVWDELCDWYVEFIKSILNQK-DSELVSETLSCFSYVLYNVCKLLHPIIP 755
F DV +Y F W + DWY+E K+ L D+ +S + YV N+ KLLHP +P
Sbjct: 700 FGDVGREIYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQAVLLYVFENILKLLHPFMP 759
Query: 756 FVTEDLYSHVSPQDDMDKQGLLCHAQWPSL-IIDDSESIEEVNWIIDLISKVRSIRTEMN 814
FVTE+L+ Q ++ L + WP + D +SI+ + L +R+ R E +
Sbjct: 760 FVTEELW-----QALPYRKEALIVSPWPQTSLPKDLKSIKRFENLQSLTRAIRNARAEYS 814
Query: 815 V-PLKAVVPLVFANIDAHVRKRLECHK---CIIDRLSSGNIIFADCPP---DRSIQIILD 867
V P K + + A+ A V + + K ++ RL N+ F D PP ++S+ ++
Sbjct: 815 VEPAKRISASIVAS--AEVIEYISKEKEVLALLSRLDLQNVHFTDSPPGDANQSVHLVAS 872
Query: 868 -GMVLFLAIGDFVDFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKER 926
G+ +L + D VD E RL K L K+ E ++ +L + +FVEKAP +++ +E+
Sbjct: 873 EGLEAYLPLADMVDISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREK 932
Query: 927 FSKVEKKRISLENS 940
++ E+K I L +
Sbjct: 933 AAEAEEK-IKLTKN 945
>gnl|CDD|178007 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 688 bits (1778), Expect = 0.0
Identities = 367/1005 (36%), Positives = 543/1005 (54%), Gaps = 104/1005 (10%)
Query: 5 KTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQD 64
K Y + +E+ W F D K F I +PPPNVTG+LH+GHA I+D
Sbjct: 98 KQYSPSAVEKSWYAWWEKSGYFGAD--AKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 155
Query: 65 IMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKE 124
+IR++RM G N LW PG DHAGIATQ+ VE +L + LTR DIGR+ F+ +VW+WK E
Sbjct: 156 TIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDE 215
Query: 125 SGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLK 184
GG+IL+QL+RLGAS DWSRE FTMDE S AV AFV LYK+GLIYRD R+VNWD +L+
Sbjct: 216 YGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLR 275
Query: 185 TSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFD---DDAKPIDWEVRDYIIVSTTR 241
T++SD+EV ++ L++ Y P++F A P++ + + I+V+TTR
Sbjct: 276 TAISDVEVDYIDIK------ERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGE-IVVATTR 328
Query: 242 PETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLIPIVSD-VYPDPEFGDGAVKVTPAH 300
ETM GD AIA+HPDD RYK L GK+A P GR +PI+ D + DP FG GAVK+TPAH
Sbjct: 329 IETMLGDTAIAIHPDDERYKHLHGKFAVHPFNGRKLPIICDAILVDPNFGTGAVKITPAH 388
Query: 301 DFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARS 360
D NDFE+ KRH L FINI T + KI N SEF G+ FAAR
Sbjct: 389 DPNDFEVGKRHNLEFINIFTDDGKI-----------------NSNGGSEFAGMPRFAARE 431
Query: 361 KIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNG-- 418
++ L+K L + + C R+ +EP I QW+++ +A+ A+ +A +G
Sbjct: 432 AVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGEN 491
Query: 419 -CLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAI 477
L FIP+ + + WLENI+ WCISRQ+WWGH+IP WY + +E+ + L S
Sbjct: 492 KKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWY-----VTLEDDQLKELGSYN 546
Query: 478 DYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTY 537
D+++ N+ + K L +D DVLDTWFSS L+P + LGWP+ T +LK +
Sbjct: 547 DHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAF 606
Query: 538 YPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSK 597
YPTSVL TG DILFFWVARM+MMG+ D PF VY+H ++RD +G+KMSKS
Sbjct: 607 YPTSVLETGHDILFFWVARMVMMGMQLGGDV------PFRKVYLHPMIRDAHGRKMSKSL 660
Query: 598 GNVVDPIDVID-------------------------------------QYGADALRFYFS 620
GNV+DP++VI+ + G DALRF
Sbjct: 661 GNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALV 720
Query: 621 IMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWI--VNKWII 678
Q INLD+ R+ GYR + K WNA+RF+ K V+ + KWI+
Sbjct: 721 SYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPATLSVETMPFSCKWIL 780
Query: 679 KRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSC 738
L I+ ++ + F+D ++ +Y + + CD ++E IK + E SE +
Sbjct: 781 SVLNKAISKTVSSLDAYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAA 840
Query: 739 FSYV---LYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLIID-DSESIE 794
+ L +LLHP +PFVTE+L+ + D ++ + +++PS + +E +E
Sbjct: 841 QDTLWICLDTGLRLLHPFMPFVTEELWQRLPQPKDHTRKDSIMISEYPSAVEAWTNEKVE 900
Query: 795 -EVNWIIDLISKVRSIRTEMNVPLKAVVPLVFANIDAH-VRKRLECHKCII---DRLSSG 849
E++ ++ + +RS+R E+ K FA + ++ H+ I LSS
Sbjct: 901 YEMDLVLSTVKCLRSLRAEVLEKQKNERLPAFALCRNQEIAAIIKSHQLEILTLANLSSL 960
Query: 850 NIIFAD---CPPDRSIQIILDGMVLFLAIGDFVDFVKERSRLKKSLEKVLDELSSIKKKL 906
++ ++ P + + + + + ++L V+ E +L+ ++++ + ++KK+
Sbjct: 961 KVLLSENDAPPAGCAFENVNENLKVYLQAQGAVNAEAELEKLRNKMDEIQKQQEKLEKKM 1020
Query: 907 ENNQFVEKAPPSILQAEKERFSKV---------EKKRISLENSLE 942
+ + EK P +I + + + +K+ E KR+ E S
Sbjct: 1021 NASGYKEKVPANIQEEDARKLTKLLQELEFFEKESKRLEAETSNS 1065
>gnl|CDD|183895 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 492 bits (1268), Expect = e-139
Identities = 249/836 (29%), Positives = 387/836 (46%), Gaps = 93/836 (11%)
Query: 1 MMIDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNT 60
+ K YD +E+K + W ++ D + V+ I PPP V+GSLH+GH F+
Sbjct: 4 PELPKKYDPEELEEKWQKIWEEEGTYKFDPDER--KPVYSIDTPPPTVSGSLHIGHVFSY 61
Query: 61 TIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWE 120
T D + R++RMRG NV + G D G+ T+ VE + ++DI R+ FIE E
Sbjct: 62 THTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYY----GIRKDDISREEFIELCRE 117
Query: 121 WKKESGGSILSQLKRLGASCDWSRERFTMDE---GMSNAVRNAFVVLYKDGLIYRDKRIV 177
E +RLG S DWS E T+ +S +F+ LYK GLIYR + V
Sbjct: 118 LTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQK---SFLDLYKKGLIYRAEAPV 174
Query: 178 NWDPSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIV 237
W P +T+++ EV +E +G L Y+++P+ +G + I +
Sbjct: 175 LWCPRCETAIAQAEVEYREREGKLNYIKFPVEDG---------------------EEIEI 213
Query: 238 STTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVT 297
+TTRPE + VA+ VHPDD RYK L+GK A +P+ G +PI++D DP+FG GAV +
Sbjct: 214 ATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMIC 273
Query: 298 PAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFA 357
D D + L I+ + ++ E + GL
Sbjct: 274 TFGDKTDVTWWRELNLPTRIIIDEDGRM----TE--------------AAGKLAGLTIEE 315
Query: 358 ARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKN 417
AR KIV L+ LL K + +H V CER +E +T QW++ L E + K
Sbjct: 316 ARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGKE 375
Query: 418 GCLSFIPQSWDKSYYEWLENIQ-PWCISRQIWWGHQIPVWYSPD-GKLFVENTEDAALRS 475
+++ P+ W+E + WCISRQ ++G IPVWY D G + + ED +
Sbjct: 376 --INWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVDP 433
Query: 476 AIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELK 535
D K S + + DV+DTW +S++ P GW +
Sbjct: 434 TKD---------EPPGYK--CPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDEDLFE 482
Query: 536 TYYPTSVLVTGFDILFFW----VARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQ 591
+P + G DI+ W + R ++ G P+ + + +V D +G+
Sbjct: 483 KVFPMDLRPQGHDIIRTWLFYTILRAYLL----------TGKLPWKNIMISGMVLDPDGK 532
Query: 592 KMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIR 651
KMSKSKGNVV P +++++YGADA+R Y++ A G D D +++ R +TK WNA R
Sbjct: 533 KMSKSKGNVVTPEELLEKYGADAVR-YWAASARLGSDTPFDEKQVKIGRRLLTKLWNASR 591
Query: 652 FSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDE 711
F +A +V +++WI+ +LA V+ T +EN+ F + F W
Sbjct: 592 FVLHFSADPEPD--KAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHV 649
Query: 712 LCDWYVEFIKSIL-NQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDD 770
CD Y+E +KS + + E VL + +LL P +PF+TE+++S +
Sbjct: 650 FCDDYLELVKSRAYGEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLYGGSV 709
Query: 771 MDKQGLLCHAQWPSLIID--DSESIEEVNWIIDLISKVRSIRTEMNVPLKAVVPLV 824
A WP + D E E +++S VR ++E + L A + V
Sbjct: 710 H-------RASWPEPDEELIDEEDEELGELAKEILSAVRKYKSEAGLSLNAPLKKV 758
>gnl|CDD|161854 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms.
Length = 861
Score = 353 bits (907), Expect = 1e-97
Identities = 219/834 (26%), Positives = 351/834 (42%), Gaps = 115/834 (13%)
Query: 7 YDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIM 66
+ + E+K + W D F G F PP GS+H+GHA N ++DI+
Sbjct: 6 GNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDII 65
Query: 67 IRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEK----VWEWK 122
+R++ M+G NV +PG D G+ + VE +L + + F EK +
Sbjct: 66 LRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQI 125
Query: 123 KESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPS 182
+E Q +RLG DW TMD + F ++ GL+YR + V W P
Sbjct: 126 EEQRE----QFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPR 181
Query: 183 LKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRP 242
+T++++ EV KE N V+ P + + P+K D K +++ TT P
Sbjct: 182 CRTALAEAEVEYKE---NYKDVKDP---SIYVKFPVK--KDKKTYLKVKLSSLLIWTTTP 233
Query: 243 ETMFGDVAIAVHPD-DYRY------------------------------------KELIG 265
T+ ++AIAVHPD +Y +L G
Sbjct: 234 WTLPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEG 293
Query: 266 KYATLPIVGRLIP-------IVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINI 318
P+ + ++ + E G G V P H D+EI K++GL +
Sbjct: 294 LEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGL---EV 350
Query: 319 LTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSY 378
L+P + E + E + D F + D A I+ L+ LL K +
Sbjct: 351 LSP-----VDEKGVYTEGVN--DFQ-GRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKI 402
Query: 379 RHIVPHCERSGVTIEPCI---TEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWL 435
H PHC R+ P I TEQW++ K + + + K ++++P+ + + WL
Sbjct: 403 THSYPHCWRTK---TPVIYRATEQWFIKTKDIKDQMLEQIKK--VNWVPEWGEGRFGNWL 457
Query: 436 ENIQPWCISRQIWWGHQIPVWYSPD-GKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKM 494
EN WCISRQ +WG IP+WY D G+ V + L I+ D R
Sbjct: 458 ENRPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSI-EELIELIELK-GIDAWFEDLHRDF 515
Query: 495 IKDGNISD----LLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTSVLVTGFDIL 550
+ + +R DVLD WF S P+AS+ +P + + K +P ++ G D
Sbjct: 516 LDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIHYPFENEKFKEVFPADFILEGSDQT 575
Query: 551 FFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQY 610
W + +G G P+ V H D+ G+KMSKS GNVVDP+ VI++Y
Sbjct: 576 RGWFYSSLAIGTAL------FGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKY 629
Query: 611 GADALRFYFSIMAVQGRDINLD---LERIA-GYRNFITKFWNAIRF-------SKMKNAR 659
GAD LR Y + D+ L+++ YR WN RF K
Sbjct: 630 GADILRLYV-ASSDPWEDLRFSDEILKQVVEKYRKIR---WNTYRFLLTYANLDKFDPLF 685
Query: 660 HSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEF 719
+SV+ ++WI+ RL +++ +V +E + F+ V L F+ +EL +WY+
Sbjct: 686 NSVAVEKFPE---EDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRI 742
Query: 720 IKSILNQKDSELVSETLSC---FSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDD 770
I+ L ++ + Y L + +LL P +P E++Y ++ ++
Sbjct: 743 IRDRL--YCEAKDNDKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGGEE 794
>gnl|CDD|180364 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 320 bits (824), Expect = 9e-88
Identities = 239/917 (26%), Positives = 387/917 (42%), Gaps = 192/917 (20%)
Query: 3 IDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTI 62
+D DF +E++ ++ W D F + + G F PP G H GH TI
Sbjct: 7 VDSQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTI 66
Query: 63 QDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEK----V 118
+D++ R++ M+G V + G D G+ ++ VE L E+ G + F EK V
Sbjct: 67 KDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESV 126
Query: 119 W----EWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDK 174
EW++ +RLG D+ T+D +V A LY GL+Y+
Sbjct: 127 LRYTDEWEE--------YTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGY 178
Query: 175 RIVNWDPSLKTSVSDLEVIQ--KEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVR 232
R+V + P +T +S+ EV Q K+V YV++ L K +++
Sbjct: 179 RVVPYCPRCETPLSNHEVAQGYKDVKDPSVYVKFKL----------KGEENE-------- 220
Query: 233 DYIIVSTTRPETMFGDVAIAVHPD-DY--------RY---KELIGKYATLP--IVGR--- 275
Y++ TT P T+ ++A+AVHPD DY Y + L+ K +V
Sbjct: 221 -YLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVETFKG 279
Query: 276 ----------LIPIVSD------VYPDPEF-----GDGAVKVTPAHDFNDFEIAKRHGLG 314
P +D V +F G G V + PA +DFE+ K++GL
Sbjct: 280 SELEGLEYEPPFPYFADEKNAFRVVLA-DFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLP 338
Query: 315 FINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDK 374
+ + + + F E ++ G A +I+ L++ LL K
Sbjct: 339 VVCPVDDDGR-FTEE-----------------VPDYAGKFVKDADKEIIRDLKERGLLFK 380
Query: 375 TDSYRHIVPHCERSGVTIEPCI---TEQWYLDAKVLAESAIRS---AKNGCLSFIPQSW- 427
++Y H PHC R P I TE W++ +V + I+ N +++ P+
Sbjct: 381 AETYEHSYPHCWRCDT---PLIYYATESWFI--RV---TKIKDRMLELNQKINWYPE-HI 431
Query: 428 -DKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDG-------------KLFVENTEDAAL 473
D + +WLEN + W ISR +WG +P+W D +LF E+ E L
Sbjct: 432 KDGRFGKWLENARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDL 491
Query: 474 -RSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTA 532
R +D ++T+ DG ++R DV+D WF S P+A L +P +
Sbjct: 492 HRPYVD-------EVTLPC----PDGGT---MRRVPDVIDVWFDSGSMPYAQLHYPFENK 537
Query: 533 EL-KTYYPTSVLVTGFDILFFWVARMMMMG-LYFMKDAEGKGIEPFHIVYMHALVRDKNG 590
E + ++P +V G D W ++ + F + P+ V +H V D++G
Sbjct: 538 EWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDR-------PPYKNVLVHGHVLDEDG 590
Query: 591 QKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIA-GYRNFITKFWNA 649
QKMSKS GN VDP +V D+YGADALR+Y + D+ + + R F+ WN
Sbjct: 591 QKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNV 650
Query: 650 IRFSKM----KNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLY 705
F + + + D +++WI+ RL +++ +VT ++N+ + +
Sbjct: 651 YSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIR 710
Query: 706 RFVWDELCDWYVE-----FIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTED 760
FV D+L +WY+ F K + D TL VL + +L P PF+ E+
Sbjct: 711 DFV-DDLSNWYIRRSRRRFWKEEDDP-DKLAAYATL---YTVLETLSRLAAPFTPFIAEE 765
Query: 761 LYSHVSPQDDMDKQGLLC-------H-AQWP----SLIIDDSESIEEVNWIIDLISKVRS 808
+Y Q L H A WP SLI D E E ++ + +++S RS
Sbjct: 766 IY-----------QNLTREDAPESVHLADWPEVDESLI--DEELEEAMDLVREIVSLGRS 812
Query: 809 IRTEMNV----PLKAVV 821
R + + PL +
Sbjct: 813 ARKKAGIKVRQPLSKIT 829
>gnl|CDD|180231 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 220 bits (563), Expect = 2e-57
Identities = 220/871 (25%), Positives = 351/871 (40%), Gaps = 220/871 (25%)
Query: 45 PPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSL 104
PP G +H+GHA N ++DI+++ + M G + + PG D G+ ++ VE +L +
Sbjct: 57 PPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKK--- 113
Query: 105 TREDIGRDAFIEKVWEWKKESGGSILSQ---LKRLGASCDWSRERFTMD-EGMSNAVRNA 160
+ + F +K E+ E + Q KRLG DW TMD + +N +R A
Sbjct: 114 -GKKLSAAEFRKKCREYALEQ---VDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIR-A 168
Query: 161 FVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKF 220
+ K G +Y+ + V W P +++++ EV + YV +P+V+G
Sbjct: 169 LGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSIYVAFPVVDGKL----AAA 224
Query: 221 DDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPD-DY--------RY----------- 260
DA +++ TT P T+ + AIAVHP+ DY +
Sbjct: 225 FKDA---------SLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVL 275
Query: 261 ----------------KELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFND 304
KEL G A P R P++ + + G G V P H +D
Sbjct: 276 ERFGWEDYEVLATFKGKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDD 335
Query: 305 FEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVS 364
+ + +++GL +L P + ++ + E F GL F A KI+
Sbjct: 336 YVVGQKYGLE---VLNP-----VDDDGRYTEEA----------PLFAGLFVFKANPKIIE 377
Query: 365 LLEKSNLLDKTDSYRHIVPHCERSGVTIEPCI---TEQWY--LDAKVLAESAIRSAKNGC 419
LE+ L K + H PHC R T +P I T QW+ +D K L E A+++ +
Sbjct: 378 KLEEKGALLKEEKITHSYPHCWR---TKKPVIFRATPQWFISMDKKGLREQALKAIEK-- 432
Query: 420 LSFIPQSWDKS-YYEWLENIQPWCISRQIWWGHQIPVWYSPDG--------------KLF 464
+ +IP +W K+ +EN WCISRQ WG IP++Y + KLF
Sbjct: 433 VKWIP-AWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLF 491
Query: 465 VENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWF---SSALWP 521
+ DA L + D K D+LD WF SS
Sbjct: 492 EKEGIDAWFELDAKELLPDEADEYEKET----------------DILDVWFDSGSS---- 531
Query: 522 FASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEG----------- 570
A++ EQ EL YP D LY EG
Sbjct: 532 HAAV--LEQRPELG--YP-------AD-------------LYL----EGSDQHRGWFQSS 563
Query: 571 -------KGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRF------ 617
+G P+ V H D G+KMSKS GNV+DP DVI +YGAD LR
Sbjct: 564 LLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVASTD 623
Query: 618 YFSIMAVQGRDINLDLERIA-GYRNFITKFWNAIRF-----SKMKNARHSVSF---VPQD 668
Y + + +I L+++A YR + N +RF + A+ +V + + D
Sbjct: 624 YSGDVRI-SDEI---LKQVAEAYR----RIRNTLRFLLGNLNDFDPAKDAVPYEELLELD 675
Query: 669 VKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSIL--NQ 726
+W + RLA + ++ EN+ F+ V L+ F +L +Y++ IK L +
Sbjct: 676 ------RWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDA 729
Query: 727 KDSELVSETLSC---FSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWP 783
DS S ++L + + L PI+ F E+++ ++ + + +WP
Sbjct: 730 ADSL---ARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPGEREESVF----LEEWP 782
Query: 784 SLIIDDSESIEEVNWIIDLISKVRSIRTEMN 814
+ + W ++ +R E+N
Sbjct: 783 EVPELADDEELLAKW-----EELLEVRDEVN 808
>gnl|CDD|184337 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 193 bits (492), Expect = 2e-49
Identities = 197/864 (22%), Positives = 333/864 (38%), Gaps = 167/864 (19%)
Query: 45 PPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAG--IATQITVESRLFAQS 102
PP G++H+GHA N ++D+++R ++M G + + PG D G I +I + R ++
Sbjct: 62 PPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKN 121
Query: 103 SLTREDIGRDAFIEKVWEWKKESGGSILSQL-------KRLGASCDWSRERFTMDEGMSN 155
+D V E++KE LS + KRLG DW TMD
Sbjct: 122 --------KDEV--PVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEA 171
Query: 156 AVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYR 215
+ F G +YR + V W +T++++ E+ +++ + +V++P+ +G
Sbjct: 172 RIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESDTIWVKFPVKDG---- 227
Query: 216 HPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDD----YRYKELIGKYATLP 271
D Y+++ TT P T+ + AI+ PD Y + P
Sbjct: 228 -KGILDSGT---------YVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKP 277
Query: 272 IVGRLI------------------PIVSDV-------------------YPDPEF---GD 291
RL+ ++DV Y GD
Sbjct: 278 -GERLVVADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGD 336
Query: 292 --------GAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEA 343
G V P H DF + ++G I + E + F V+ D
Sbjct: 337 HVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTENAPGFGGARVIDD-- 394
Query: 344 RNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCI---TEQW 400
EG A ++ L ++ LL +H PH RS +P I T QW
Sbjct: 395 -------EGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSK---KPVIFRNTPQW 444
Query: 401 --YLDAKVLAESAIRSAKNGCLS---FIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPV 455
+D + + +RS + F+P + Y +E+ W ISRQ WG IP+
Sbjct: 445 FISMDKDLGDGTTLRSRALDAIDKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPI 504
Query: 456 WYSPDGKLFV-----ENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDV 510
+ + DG++ + DA D + ++ K R + + + + D+
Sbjct: 505 FVAEDGEILMDEEVNARIADAFEEEGADAWFAEG----AKER-FLGGFHPNGEFTKVTDI 559
Query: 511 LDTWFSS-ALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAE 569
LD WF S + F E +LK +P + + G D W ++
Sbjct: 560 LDVWFDSGSTHAFVL----EDRPDLK--WPADLYLEGSDQHRGWFNSSLLES------CG 607
Query: 570 GKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQ---- 625
+G P+ V H D+ G+KMSKS GN V P DVI Q GAD LR + + +V
Sbjct: 608 TRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLW--VASVDYSDD 665
Query: 626 ---GRDINLDLERIA-GYRNFITKFWNAIRFSKMKNARHSVSFVP-QDVKWI-----VNK 675
G++I L++++ YR K N +R+ + N H F P +DV + +
Sbjct: 666 QRIGKEI---LKQVSETYR----KLRNTLRWL-LGNLAH---FDPGEDVVAYADLPELER 714
Query: 676 WIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSIL--NQKDSELVS 733
+++ RL + V + + F + L FV +L +Y + K L + S
Sbjct: 715 YMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLRRR 774
Query: 734 ETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLIIDDSESI 793
+ F + + K L PI+PF E+ + + P +++ + Q+P +
Sbjct: 775 AAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYP----EEEVSVHLEQFPETPAFWRDDA 830
Query: 794 EEVNWIIDLISKVRSIRTEMNVPL 817
W K R++R + L
Sbjct: 831 LAEKW-----RKFRAVRDVVTGAL 849
>gnl|CDD|178470 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 192 bits (490), Expect = 4e-49
Identities = 228/910 (25%), Positives = 384/910 (42%), Gaps = 150/910 (16%)
Query: 5 KTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQD 64
K + F E+K + W+ +DAF+ + G + PP TG H GH TI+D
Sbjct: 6 KDFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKD 65
Query: 65 IMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDI---GRDAFIEK---- 117
I+ R++ M G +V + G D G+ + ++ +L + R+D+ G D + E+
Sbjct: 66 IVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKR---RDDVLKMGIDKYNEECRSI 122
Query: 118 ----VWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRD 173
EW+K + R G D+ + TMD +V F L++ GL+Y+
Sbjct: 123 VTRYSKEWEK--------TVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKG 174
Query: 174 KRIVNWDPSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDD-AKPIDW--- 229
+++ + + KT +S+ E D V P V V++ PI D D A + W
Sbjct: 175 FKVMPYSTACKTPLSNFEAGLNYKD-----VSDPAVM-VSF--PIVGDPDNASFVAWTTT 226
Query: 230 -------------------EVRD-----YIIVSTTRPETMFGDVAIAVH-------PDDY 258
+VR+ IV+ +R + + + Y
Sbjct: 227 PWTLPSNLALCVNPNFTYVKVRNKYTGKVYIVAESRLSALPTAKPKSKKGSKPENAAEGY 286
Query: 259 RYKELIGKYATLPIVG-RLIPI--------------VSDVYPDPEFGDGAVKVTPAHDFN 303
E++ K +VG + P+ V+D Y + G G V PA +
Sbjct: 287 ---EVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPAFGED 343
Query: 304 DFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIV 363
D+ + +G+ P + ++ F E + ++F G A I+
Sbjct: 344 DYRVCLANGIIEKGGNLPVP---VDDDGCFTEKV----------TDFSGRYVKDADKDII 390
Query: 364 SLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCI---TEQWYLDAKVLAESAIRSAKNGCL 420
+ ++ L K+ S H P C RS P I W++ + + + + + K
Sbjct: 391 AAIKAKGRLVKSGSITHSYPFCWRSDT---PLIYRAVPSWFVKVEEIKDRLLENNKQ--T 445
Query: 421 SFIP-QSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFV-----ENTEDAALR 474
++P +K ++ WLEN + W +SR +WG +P+W S DG+ V E +
Sbjct: 446 YWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPIWISDDGEEVVVIGSIAELEKLSGV 505
Query: 475 SAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAEL 534
D + + +T+ + + G +L+R +DV D WF S P+A + +P + EL
Sbjct: 506 KVTDLHRHFIDHITIPSSRGPEFG----VLRRVDDVFDCWFESGSMPYAYIHYPFENKEL 561
Query: 535 -KTYYPTSVLVTGFDILFFWVARMMMMGL-YFMKDAEGKGIEPFHIVYMHALVRDKNGQK 592
+ +P + G D W +M++ F K A F + + LV ++G+K
Sbjct: 562 FEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPA-------FKNLICNGLVLAEDGKK 614
Query: 593 MSKSKGNVVDPIDVIDQYGADALRFYF-SIMAVQGRDINLDLERIAG-YRNFITKFWNAI 650
MSKS N DP +VID+YGADALR Y + V+ + E + G ++ ++NA
Sbjct: 615 MSKSLKNYPDPNEVIDKYGADALRLYLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAY 674
Query: 651 RFSKMKNARH-----SVSFVP------QDVKWIVNKWIIKRLATVINDVTVGMENHRFND 699
RF ++NA+ FVP Q+ ++++WI +++ V M +R
Sbjct: 675 RFL-VQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYT 733
Query: 700 VSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSET-LSCFSYVLYNVCKLLHPIIPFVT 758
V L +F+ D L + YV F + L + E T LS VL CK++ P PF T
Sbjct: 734 VVPYLVKFI-DNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPFFT 792
Query: 759 EDLYSH---VSPQDDMDKQGLLCHAQWPSLIIDD-SESIEE-VNWIIDLISKVRSIRTEM 813
E LY + V P ++ C +P + + E IE+ V+ + +I R+IR
Sbjct: 793 EVLYQNLRKVLP--GSEESIHYC--SFPQVDEGELDERIEQSVSRMQTVIELARNIRERH 848
Query: 814 NVPLKAVVPL 823
N PLK PL
Sbjct: 849 NKPLKT--PL 856
>gnl|CDD|161856 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong to
two families so broadly different that they are
represented by separate models. This model includes both
archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS.
Length = 938
Score = 163 bits (415), Expect = 1e-40
Identities = 207/1028 (20%), Positives = 379/1028 (36%), Gaps = 210/1028 (20%)
Query: 12 IEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFER 71
IE+K ++W F D + F + M P + G +H GH TI ++ RFER
Sbjct: 3 IEKKWQKRWEEAHIFEADPDDREK---FFLTMAYPYLNGVMHAGHCRTFTIPEVSARFER 59
Query: 72 MRGKNVLWQ-----PGTDHAGIATQITVESRLFAQS-----SLTREDIGRDAFIEKVWEW 121
M+GKNVL+ GT G+A I L ++ ++ RE++ + E + E+
Sbjct: 60 MKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEY 119
Query: 122 -KKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWD 180
+E+ S K +G S DW R T D + L + GLI + + V +
Sbjct: 120 FSREA----ESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYC 175
Query: 181 PSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTT 240
P V D +++ E + V Y L++ + +D A Y + +T
Sbjct: 176 PKDGNPVEDHDLLSGE---GVTIVEYILIK-------FELEDGAF--------YFVAATL 217
Query: 241 RPETMFGDVAIAVHPD----------------------------------DYRYKELIGK 266
RPET++G V+P + K+ IGK
Sbjct: 218 RPETVYGVTNCWVNPTITYVIAEVGGEKWITSKEAFENLSYQKLKYKPIEEVPGKQFIGK 277
Query: 267 YATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDF----EIAKRHGL--------- 313
P+VG +PI+ + D G G V PAH +D+ ++
Sbjct: 278 KVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVID 337
Query: 314 -GFINI-------------LTPEAKIFLSENESFLEN----IVLSDEARNIFSE----FE 351
+ + + E I ++++ LE + + + ++
Sbjct: 338 IEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYK 397
Query: 352 GLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCIT----EQWYLDAKVL 407
G+ A+ K+ + L + L D + C R G CI +QW++
Sbjct: 398 GMKVSEAKEKVKADLIDAGLADVMYEFSESPVIC-RCG---TDCIVKVVEDQWFVK---Y 450
Query: 408 AESAIRSAKNGCLS---FIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLF 464
++ + + + CL IP+ ++ ++ ++ W R+ G ++P W D K
Sbjct: 451 SDESWKELAHECLEGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLP-W---DEKWL 506
Query: 465 VENTEDAALRSA---IDYYLSQDNDMTVKVRKMIKDGNISD-----LLKRDEDVLDTWFS 516
+E+ D+ + A I +YL++D + ++D + DV +T
Sbjct: 507 IESLSDSTIYMAYYTIAHYLNKDY---------YGNEQMTDEFFDYIFLGKGDVKNTNIP 557
Query: 517 SALWPFASLGWPEQTAELKTYYPTSVLVTGFDI----LFFWVARMMMMGLYFMKDAEGKG 572
L E + +YP ++G D+ L F++ + + F + +G
Sbjct: 558 LPA--IQKL-----RREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAI---FPEKFWPRG 607
Query: 573 IEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLD 632
I V + G+KMSKSKGNV+ ++++GAD R Y + A +D +
Sbjct: 608 IVVNGYVML-------EGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWK 660
Query: 633 LERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGM 692
+ G + + + F++ + + S ++ +I ++W+ R+ I + M
Sbjct: 661 ESEVEGTILRLERLYE---FAE-EITKESNLETGEETSFI-DRWLESRMNAAIKETYEAM 715
Query: 693 ENHRF-NDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLH 751
EN + V L+ D DWY + +N KD + L KLL
Sbjct: 716 ENFQTRKAVKYALFDLQAD--VDWYRR--RGGVNHKD---------VLARYLETWIKLLA 762
Query: 752 PIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWP----SLIIDDSESIEEVNWIIDLISKVR 807
P P E+++ V +G + A++P + + E+ EE L + VR
Sbjct: 763 PFAPHFAEEMWEEVG------NEGFVSLAKFPEASEPAVDKEVEAAEEY-----LRNLVR 811
Query: 808 SIRTEMNVPLKAVVPLVFANIDAHVRKRLECHKCIIDRLSSGNIIFADCPPDRSIQIILD 867
I+ + + + + L+ I G D
Sbjct: 812 DIQEIAKIDASKPKRVYLYTSEDWKSQCLK-----IVAELFGEDTGEDMKKVMEEPEERK 866
Query: 868 GMVLFLAIGDFVDFVKERSR-LKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKER 926
+ + VK+ + KK E + E+ +K F++K +++ E
Sbjct: 867 RGK------EVISLVKQIIKDEKKEDELQISEIEVLKAAAR---FIKKEVGALVIIEFSA 917
Query: 927 FSKVEKKR 934
S E K+
Sbjct: 918 DSFPENKK 925
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 150 bits (379), Expect = 2e-36
Identities = 198/870 (22%), Positives = 355/870 (40%), Gaps = 166/870 (19%)
Query: 13 EQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERM 72
E+K ++ W S+DAF + PP TG H GH I+D + R+
Sbjct: 78 EEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQ 137
Query: 73 RGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDI---GRDAFIEK----VWEWKKES 125
G +V + G D G+ + +E + +EDI G D + EK V ++ E
Sbjct: 138 CGFSVERKFGWDCHGLPIEYEIEKE---NNINKKEDILKMGIDVYNEKCRGIVLKYSNE- 193
Query: 126 GGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNW------ 179
+ ++R+G D+ + TMD+ +V F LYK+ +Y+ +++ +
Sbjct: 194 ---WVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNT 250
Query: 180 ---------------DPSLKTS---VSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFD 221
DPS+ S SD +++E + + L E + + K +
Sbjct: 251 PISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIE--EDKQLLGEKYSVLYNNKRE 308
Query: 222 D-------DAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPD------------------ 256
+ + + I+ TT P T+ ++A+ V+
Sbjct: 309 NSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVG 368
Query: 257 ----DYRYKELIGKYATLPIVGRLI----------PIVSDVYPDPEFGDGAVKVTPAHDF 302
++ KEL L IV R P+ ++ Y F + A K+ A DF
Sbjct: 369 ECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKIL-ADDF 427
Query: 303 ------------------NDFEIAKRHGLGFINILTPEAKIF---LSENESFLENIVLSD 341
+DF + K++G ++ PE IF L N F + +
Sbjct: 428 VTDDAGTGIVHCAPTYGEDDFRVCKKNG-----VIDPEKNIFIDPLDANGYFTNEV---E 479
Query: 342 EARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWY 401
E +N++ + A + I L+ N L ++ H P C RS + W+
Sbjct: 480 EVQNLYIK-------EADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWF 532
Query: 402 LDAKVLAESAIRSAKNGCLSF-IPQSW-DKSYYEWLENIQPWCISRQIWWGHQIPVWYSP 459
+ ++ S KN ++ IP +K ++ W+++ + WCISR +WG IP+W
Sbjct: 533 IR---VSNSTNELVKNNETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIW--A 587
Query: 460 DGKL----FVENT----EDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVL 511
D K+ VE+ E + +++ D + + + +K K G LKR +V
Sbjct: 588 DEKMETVICVESIKHLEELSGVKNINDLHRHFIDHIEIKNPK----GKTYPKLKRIPEVF 643
Query: 512 DTWFSSALWPFASLGWPEQTA--ELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAE 569
D WF S P+A + +P T + +P + G D W ++++ A
Sbjct: 644 DCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWFYTLLVISTLLFDKA- 702
Query: 570 GKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDI 629
PF + + LV +G+KMSK N DP+ ++D+YGAD+LR Y I +V R
Sbjct: 703 -----PFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYL-INSVAVRAE 756
Query: 630 NLDLERIAG---YRNFITKFWNAIRFSKMKNARHSV----SFVPQDVKW------IVNKW 676
NL + ++FI F+++ RF + R+ F+ + I+++W
Sbjct: 757 NLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTD-YIYKNDNIMDQW 815
Query: 677 IIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEF----IKSILNQKDSELV 732
I + ++ V M+ ++ +V L +F+ + L +WY+ ++ L +++ L
Sbjct: 816 IFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFI-ENLTNWYIRLNRDRMRGSLGEENC-LQ 873
Query: 733 SETLSCFSYVLYNVCKLLHPIIPFVTEDLY 762
S + + L+ V L+ P PF+TE +Y
Sbjct: 874 SLCTTYRTLHLFTV--LMAPFTPFITEYIY 901
>gnl|CDD|178996 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 141 bits (359), Expect = 6e-34
Identities = 126/481 (26%), Positives = 183/481 (38%), Gaps = 179/481 (37%)
Query: 7 YDFAFIEQKSVEKWNSVDAFRI--DVAPKLGSGVFCIAM-PPPNVTGSLHMGHAFNTTIQ 63
Y+ IE+K + W F+ D + K + + M P P +G LHMGH N TI
Sbjct: 5 YNPKEIEKKWQKYWEENKTFKTTEDSSKKY----YVLDMFPYP--SGGLHMGHVRNYTIG 58
Query: 64 DIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAF--------I 115
D++ R++RM+G NVL P +G DAF I
Sbjct: 59 DVIARYKRMQGYNVL-HP---------------------------MGWDAFGLPAENAAI 90
Query: 116 E-----KVWEWK-----KESGGSILSQLKRLGASCDWSRERFTMDEG-------MSNAVR 158
+ W ++ K+ QLK LG S DWSRE T D +
Sbjct: 91 KTGTHPAEWTYENIANMKK-------QLKSLGFSYDWSREIATCDPEYYKWTQWI----- 138
Query: 159 NAFVVLYKDGLIYRDKRIVNWDPSLKTSV-------------SDLEVIQKEVDGNLWYVR 205
F+ LY+ GL YR + VNW P T V V +KE+ W+++
Sbjct: 139 --FLKLYEKGLAYRKESPVNWCPVDGT-VLANEQVIDGRCWRCGAPVEKKELRQ--WFLK 193
Query: 206 ---Y--PLV------------------------EGVTYRHPIKF--DDDAKPIDWEVRDY 234
Y L+ EG + F +D + I+
Sbjct: 194 ITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAE----VTFKVEDSDEKIE------ 243
Query: 235 IIVSTTRPETMFGD--VAIAV-HP------------DDYR--------------YKE--- 262
V TTRP+T+FG + +A HP + KE
Sbjct: 244 --VFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQTETKEKTG 301
Query: 263 -LIGKYATLPIVGRLIPI-VSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILT 320
G YA P+ G IP+ ++D Y ++G GAV PAHD DFE AK++GL ++
Sbjct: 302 VFTGLYAIHPLTGEKIPVWIAD-YVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIE 360
Query: 321 PEAKIFLSENESFLENIVL--SDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSY 378
P E++ + VL S E +GLD A+ I++ LE+ L + +Y
Sbjct: 361 PGDGDEDISEEAYTGDGVLINSG-------ELDGLDSEEAKEAIIAWLEEKGLGKRKVNY 413
Query: 379 R 379
R
Sbjct: 414 R 414
Score = 96.3 bits (241), Expect = 3e-20
Identities = 67/255 (26%), Positives = 111/255 (43%), Gaps = 48/255 (18%)
Query: 592 KMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIR 651
KMSKSKGNVVDP D+I++YGAD R + +D+ + G F+ + W +
Sbjct: 570 KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVV 629
Query: 652 FSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDE 711
+K + V+ + +D K + ++L I VT +E RFN A L
Sbjct: 630 DAKGEAGALDVAALSED------KELRRKLHKTIKKVTEDIERLRFNTAIAALMEL---- 679
Query: 712 LCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDM 771
V + +++D ++ E L + +LL P P + E+L+ +
Sbjct: 680 -----VNALYKAEDEQDKAVLRE-------ALEILVRLLAPFAPHLAEELWEK------L 721
Query: 772 DKQGLLCHAQWP----SLIIDDS-ESIEEVNWIIDLISKVRSIRTEMNVPLKA----VVP 822
+G + +A WP + +++D + +VN KVR ++ VP A +
Sbjct: 722 GHEGSIANAPWPTADEAALVEDEVTIVVQVNG------KVRG---KIEVPADASKEEIEA 772
Query: 823 LVFANIDAHVRKRLE 837
L A D V+K LE
Sbjct: 773 LALA--DEKVQKFLE 785
Score = 30.4 bits (70), Expect = 2.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 441 WCISRQIWWGHQIPVWYSPDG 461
W ISRQ +WG IP+ + D
Sbjct: 418 WGISRQRYWGEPIPIIHCEDC 438
>gnl|CDD|161857 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches.
Length = 842
Score = 137 bits (346), Expect = 2e-32
Identities = 114/441 (25%), Positives = 178/441 (40%), Gaps = 99/441 (22%)
Query: 7 YDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAM-PPPNVTGSLHMGHAFNTTIQDI 65
Y+ IE+K +KW F+ + + M P P +G+LHMGH N TI D+
Sbjct: 1 YNHIEIEEKWQQKWKENKVFKFTDDSNK-PKYYILDMFPYP--SGALHMGHVRNYTITDV 57
Query: 66 MIRFERMRGKNVLWQPGTDHAGI-ATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKE 124
+ R+ RM+G NVL G D G+ A ++ + T E+I +
Sbjct: 58 LSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKW-TYENI--ANMKK-------- 106
Query: 125 SGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLK 184
QL+ LG S DW RE T D + F+ L++ GL Y + VNW P+
Sbjct: 107 -------QLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDG 159
Query: 185 TSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPI--------DW------- 229
T +++ +V DG W P+ + + +K A+ + W
Sbjct: 160 TVLANEQVDS---DGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEM 216
Query: 230 ---------------EVRDY---IIVSTTRPETMFGDVAIAVHPDDYRYKELI------- 264
++ D+ I V TTRP+T+FG +A+ P+ +++
Sbjct: 217 QRNWIGKSEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVA 276
Query: 265 --------------------------GKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTP 298
G A P+ G IPI Y +G GAV P
Sbjct: 277 AFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLTGEKIPIWVANYVLASYGTGAVMGVP 336
Query: 299 AHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAA 358
AHD DFE A+++ L ++ P K + ++F E+ VL + EF GL+ A
Sbjct: 337 AHDERDFEFAQKYKLPIKVVIDPAGKN--LKTQAFTEDGVLVNSG-----EFNGLNSSEA 389
Query: 359 RSKIVSLLEKSNLLDKTDSYR 379
R I+++LEK + +YR
Sbjct: 390 REAIIAMLEKEGKGKRKVNYR 410
Score = 89.0 bits (221), Expect = 5e-18
Identities = 94/453 (20%), Positives = 171/453 (37%), Gaps = 94/453 (20%)
Query: 438 IQPWCISRQIWWGHQIPVWY--------SPDGKLFVENTEDAALRSAIDYYLSQDNDMTV 489
++ W SRQ +WG IP+ + P+ L V E + LS+ + V
Sbjct: 411 LRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEW-V 469
Query: 490 KVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAE------LKTYYPTSVL 543
V + R+ D +DT+ S+ W + P+ T + + + P +
Sbjct: 470 NV----TCPSCGKPALRETDTMDTFAGSS-WYYLRYLDPKNTDQPFDKEKAEYWLPVDLY 524
Query: 544 VTGFD--ILFFWVARM------------------------MMMGLYFMKDAEGKGIEPFH 577
+ G + IL AR M++G Y+ + + P
Sbjct: 525 IGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGK---SPPDE 581
Query: 578 IVYMHALVRDKNG--------QKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDI 629
+ +DK+G +KMSKSKGN +DP +++ ++GADALR Y M +
Sbjct: 582 LTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASL 641
Query: 630 NLDLERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVT 689
+ + G R F+ + WN F + +++ + K + + + + VT
Sbjct: 642 EWNDSGLEGARRFLDRVWN--LFYNILGELDGKTYLTPTILEEAQKELRRDVHKFLKKVT 699
Query: 690 VGMENHR-FNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCK 748
+E FN + + + ++ K L E L F VL
Sbjct: 700 EDLEKLESFNTAISA------------MMILLNALYKAKKDALYLEYLKGFLTVLS---- 743
Query: 749 LLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWP----SLIIDDSESIEEVNWIIDLIS 804
P P + E+L+ + + + KQ A+WP + +++D +I ++ +
Sbjct: 744 ---PFAPHLAEELWEKLGSEPFIIKQ-----AKWPKVDETALVEDKVTI-----VLQVNG 790
Query: 805 KVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLE 837
K ++ +T + V A D V+K LE
Sbjct: 791 KFKAKKTVPKDADEEQV-EELAKQDPEVKKYLE 822
>gnl|CDD|178436 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 135 bits (341), Expect = 7e-32
Identities = 147/596 (24%), Positives = 258/596 (43%), Gaps = 85/596 (14%)
Query: 271 PIVGRLIPIV--SDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLS 328
P+ R P+V D Y E G G V P H D+ ++GL +L+P +
Sbjct: 317 PLYNRESPVVIGGD-YITTESGTGLVHTAPGHGQEDYITGLKYGL---PLLSP-----VD 367
Query: 329 ENESFLENIVLSDEARNIFSEFEGLDCFAARSK-IVSLLEKSNLLDKTDSYRHIVPHCER 387
+ F ++EA +F GL + +V L+++ L ++Y H P+ R
Sbjct: 368 DAGKF------TEEA----GQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWR 417
Query: 388 SGVTIEPCI---TEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCIS 444
T +P I TEQW+ + ++A+ + + +IP + + WCIS
Sbjct: 418 ---TKKPTIFRATEQWFASVEGFRQAALDAIDK--VKWIPAQGENRIRAMVSGRSDWCIS 472
Query: 445 RQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDG--NISD 502
RQ WG IPV+Y + K + N E A +I D + V ++ + + +
Sbjct: 473 RQRTWGVPIPVFYHVETKEPLMNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKAS 532
Query: 503 LLKRDEDVLDTWFSS-ALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMG 561
++ D +D WF S + W G L YP + + G D W ++
Sbjct: 533 DYEKGTDTMDVWFDSGSSWA----GVLGSREGLS--YPADLYLEGSDQHRGWFQSSLLTS 586
Query: 562 LYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVID---------QYGA 612
+ KG P+ V H V D+ G KMSKS GNVVDP VI+ YGA
Sbjct: 587 V------ATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGA 640
Query: 613 DALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKN-----ARHSVSFVPQ 667
D LR + + + G D+ + + + + K +R+ + N ++V + +
Sbjct: 641 DVLRLWVASVDYTG-DVLIGPQILKQMSDIYRKLRGTLRY-LLGNLHDWKPDNAVPY--E 696
Query: 668 DVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQK 727
D+ ++K+ + +L V+N++ +N++F + +L RF +L ++Y++ K
Sbjct: 697 DLP-SIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDV------AK 749
Query: 728 DSELVSETL-----SC---FSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCH 779
D V T SC + L ++ + + PI+P + ED + ++ Q+D +
Sbjct: 750 DRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQEDGSAAESVFE 809
Query: 780 AQWPSLIID-DSESIEEVNWIIDLISKVRSIRTEMNVPLKAV--VPLVFANIDAHV 832
A WP+ + S E+V D S + +R E+N L++ L+ A+++A V
Sbjct: 810 AGWPTPNEEWLSFPAEDV----DFWSLLLEVRDEVNKVLESARNGKLIGASLEAKV 861
Score = 81.7 bits (202), Expect = 8e-16
Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 32/226 (14%)
Query: 45 PPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSL 104
PP G LH+GHA N ++D + R++ ++GK V + PG D G+ ++ V L +
Sbjct: 40 PPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQE--- 96
Query: 105 TREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVL 164
R+++ K ++ K++ + KR G DW T+D A F +
Sbjct: 97 ARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQM 156
Query: 165 YKDGLIYRDKRIVNWDPSLKTSVSDLEV------IQKEVDGNLWYVRYPLVEGVTYRHPI 218
+ +G IYR ++ V+W PS +T++++ E+ + K + YV +P+V
Sbjct: 157 FLNGYIYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSI-----YVAFPVVSP------- 204
Query: 219 KFDDDAKPIDWEVRD-----YIIVSTTRPETMFGDVAIAVHPD-DY 258
++ E+ + + + TT P TM + A+AV+ Y
Sbjct: 205 -----SETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVNDKLQY 245
>gnl|CDD|149360 pfam08264, Anticodon_1, Anticodon-binding domain. This domain is
found valyl and leucyl tRNA synthetases. It binds to the
anticodon of the tRNA.
Length = 148
Score = 127 bits (322), Expect = 9e-30
Identities = 44/153 (28%), Positives = 78/153 (50%), Gaps = 8/153 (5%)
Query: 674 NKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVS 733
++WI+ RL +I +VT E +RFN ++ LY F W++L DWY+E K L +D +
Sbjct: 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEDPDESK 60
Query: 734 ETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSL--IIDDSE 791
+ VL + +LL P +PF+TE+L+ + +G + A WP D E
Sbjct: 61 RRATTLYEVLETLLRLLAPFMPFITEELWQK------LGLKGSIHLAPWPEADEEALDEE 114
Query: 792 SIEEVNWIIDLISKVRSIRTEMNVPLKAVVPLV 824
EE +++ +R +R+E+ + + ++
Sbjct: 115 LEEEFELRQEIVQAIRKLRSELKIKKSLPLEVI 147
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 116 bits (293), Expect = 2e-26
Identities = 116/450 (25%), Positives = 178/450 (39%), Gaps = 111/450 (24%)
Query: 2 MIDKTYDFAFIEQKSVEKWNSVDAFR----IDVA-PKLGSGVFCIAM-PPPNVTGSLHMG 55
+ Y F IE K W FR +D + PK + + M P P+ G LH+G
Sbjct: 75 AAKRAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKF----YVLDMFPYPSGAG-LHVG 129
Query: 56 HAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGI-ATQITVESRLFAQSSLTREDIGRDAF 114
H T DI+ R++RM+G NVL G D G+ A Q +E+ + + T ++I R
Sbjct: 130 HPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKIT-TLKNIAR--- 185
Query: 115 IEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDK 174
SQLK LG S DW RE T + + F+ L K GL Y+ +
Sbjct: 186 --------------FRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAE 231
Query: 175 RIVNWDPSLKTSVSDLEVIQKEVD-GNLWYVRYPL-----------------VEGVTYRH 216
VNW P+L T +++ EV+ + G +R P+ ++ + +
Sbjct: 232 VPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPE 291
Query: 217 PIK------------FDDDAKPIDWEVRD---YIIVSTTRPETMFGDVAIAVHP------ 255
IK + D +D E ++ I V TTRP+T+FG + V P
Sbjct: 292 SIKEMQRNWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLS 351
Query: 256 ----DDYR-----YKEL--------------------IGKYATLPIVGRLIPI-VSDVYP 285
+ + Y + G YA P G IPI V+D Y
Sbjct: 352 SLTTAEQKEAVEEYVDAASRKSDLERTELQKEKTGVFTGSYAINPATGEAIPIWVAD-YV 410
Query: 286 DPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARN 345
+G GA+ PAHD DFE A++ L ++ P +++ + E
Sbjct: 411 LGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAY------TGEGVI 464
Query: 346 IFS-----EFEGLDCFAARSKIVSLLEKSN 370
+ S + GL A K++ LE++
Sbjct: 465 VNSSSSGLDINGLSSKEAAKKVIEWLEETG 494
Score = 60.6 bits (147), Expect = 2e-09
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 9/127 (7%)
Query: 592 KMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINL-DLERIAGYRNFITKFWNAI 650
KMSKS+GNVV+P DV+ +YGAD+LR Y M RD + G F+ + W +
Sbjct: 723 KMSKSRGNVVNPDDVVSEYGADSLRLYEMFMG-PLRDSKTWSTSGVEGVHRFLGRTWRLV 781
Query: 651 RFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFV-- 708
+ + + V D + + + ++ L I VT +E+ RFN + + F
Sbjct: 782 VGAPLPDGSFRDGTVVTDEEPSLEQ--LRLLHKCIAKVTEEIESTRFNTAISAMMEFTNA 839
Query: 709 ---WDEL 712
WD++
Sbjct: 840 AYKWDKV 846
>gnl|CDD|183418 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 98.4 bits (246), Expect = 7e-21
Identities = 114/445 (25%), Positives = 165/445 (37%), Gaps = 136/445 (30%)
Query: 52 LHMGHAFNTTIQDIMIRFERMRGKNVLW-----QPGTDHAGIATQI------TVESRLFA 100
LH+GH TI D++ R++RMRG NVL+ GT GIA +I T+E
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIE----L 56
Query: 101 QSSLTR--EDIGRDAFIEK-------VWEWKKESGGSILSQLKRLGASCDWSRERFTMDE 151
SL E+ +EK V + +E +KR+G S DW RE T D
Sbjct: 57 YKSLYGIPEEE-----LEKFKDPEYIVEYFSEE----AKEDMKRIGYSIDWRREFTTTDP 107
Query: 152 GMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSD---LEVIQKEVDGNLWYVRYPL 208
S + F L + GLI + V + P+ V D L+ + E+ V Y L
Sbjct: 108 EYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEI------VEYTL 161
Query: 209 VEGVTYRHPIKF--DDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPD-DY------- 258
IKF +D + +T RPET+FG + V+PD Y
Sbjct: 162 ---------IKFEESEDL---------ILPAATLRPETIFGVTNLWVNPDATYVKAEVDG 203
Query: 259 --------------------------RYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDG 292
+ ELIGK P+ G+ +PI+ + DP+ G G
Sbjct: 204 EKWIVSKEAAEKLSFQDRDVEIIEEIKGSELIGKKVKNPVTGKEVPILPADFVDPDNGTG 263
Query: 293 AVKVTPAHDFNDF--------EIAKRHGLGFINILTPE------AKIFL------SENES 332
V PAH D+ + I ++ E AK + S+ +
Sbjct: 264 VVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKSQEDP 323
Query: 333 FLE---NIVLSDE-----ARNIFSEFEGLDCFAARSKIVSLLEKSNLLDK--TDSYRHIV 382
LE V E + E+ G AR KI L + + D S R +
Sbjct: 324 ELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVY 383
Query: 383 PHCERSGVTIEPCIT----EQWYLD 403
C R G C+ +QW++D
Sbjct: 384 --C-RCG---TECVVKVVKDQWFID 402
Score = 92.6 bits (231), Expect = 4e-19
Identities = 74/350 (21%), Positives = 131/350 (37%), Gaps = 68/350 (19%)
Query: 589 NGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWN 648
G+KMSKSKGNV+ I++YGAD +R Y + A +D + + + R + +F+
Sbjct: 574 EGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKEVESVRRQLERFYE 633
Query: 649 AIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFND-VSAVLYRF 707
+ + F ++KW++ RL +I + T ME+ + D V Y
Sbjct: 634 LAKELIEIGGEEELRF--------IDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYEL 685
Query: 708 VWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVC----KLLHPIIPFVTEDLYS 763
WY+ + N VL V +LL P P + E+L+
Sbjct: 686 --LNDLRWYLRRVGEANN---------------KVLREVLEIWIRLLAPFTPHLAEELWH 728
Query: 764 HVSPQDDMDKQGLLCHAQWP----SLIIDDSESIEEVNWIIDLISKVRSIRTEMNVPLKA 819
+ +G + +WP S I +++E EE + LI +R I + K
Sbjct: 729 ------KLGGEGFVSLEKWPEPDESKIDEEAELAEEY--VKRLIEDIREILKVAKIKPKK 780
Query: 820 VVPLVFANIDAHVRKRLECHKCIIDRLSSGNIIFADCPPDRSIQIILDGMVLFLAIGDFV 879
V ++ + LE D I+ ++ +
Sbjct: 781 VY--IYVA-PDWKYEVLEIAAENGDV---KEA----------IKELMKD-------EELR 817
Query: 880 DFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSK 929
KE ++L + + K + +L +KL E+ +L+ K+ K
Sbjct: 818 KHGKEVAKLAQKIVKEVLKLDKEVRKLILKNIDEEE---VLEEAKDFLEK 864
>gnl|CDD|183364 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 92.6 bits (231), Expect = 4e-19
Identities = 71/264 (26%), Positives = 111/264 (42%), Gaps = 38/264 (14%)
Query: 510 VLDTWFSSALWPF-ASLGWPEQTAEL----KTYYPTSVLVTGFDILFF----WVARMMMM 560
V+ WF AL + +LG+P+ L Y+P V + G DIL F W A +M
Sbjct: 221 VIYVWFD-ALTNYLTALGYPDDEELLAELFNKYWPADVHLIGKDILRFHAVYWPA--FLM 277
Query: 561 GLYFMKDAEGKGIEPFHIVYMHA-LVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYF 619
G+ V+ H L D G+KMSKS GNV+DP D++D+YG DA+R++
Sbjct: 278 AA---------GLPLPKRVFAHGFLTLD--GEKMSKSLGNVIDPFDLVDEYGVDAVRYFL 326
Query: 620 SIMAVQGRDINLDLERIAGYRN--FITKFWNAI-RFSKMKNARHSVSFVPQD-VKWIVNK 675
G+D + E N N R M A++ VP+ ++
Sbjct: 327 LREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSM-IAKNFDGKVPEPGALTEADE 385
Query: 676 WIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSET 735
+++ A ++ V M+N F+ + V + E L + D E ++
Sbjct: 386 ALLEAAAALLERVRAAMDNLAFDKALEAILALV-RAANKYIDEQAPWSLAKTDPERLATV 444
Query: 736 LSCFSYVLYNVCK----LLHPIIP 755
L Y L V + LL P++P
Sbjct: 445 L----YTLLEVLRGIAVLLQPVMP 464
Score = 52.2 bits (126), Expect = 7e-07
Identities = 38/137 (27%), Positives = 52/137 (37%), Gaps = 21/137 (15%)
Query: 39 FCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRL 98
F I P G H+GHA+ T D++ RF+R+RG +V + GTD G Q E
Sbjct: 3 FYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEA- 61
Query: 99 FAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCD-WSRERFTMDEGMSNAV 157
G E + + + L S D + R T D AV
Sbjct: 62 -----------GISPQ-----ELADRNSAAFKRLWEALNISYDDFIR---TTDPRHKEAV 102
Query: 158 RNAFVVLYKDGLIYRDK 174
+ F L +G IY K
Sbjct: 103 QEIFQRLLANGDIYLGK 119
>gnl|CDD|183389 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 78.7 bits (195), Expect = 6e-15
Identities = 47/127 (37%), Positives = 61/127 (48%), Gaps = 32/127 (25%)
Query: 525 LGWPEQTAEL-KTYYPTSVLVTGFDILFF----WVARMMMMGLYFMKDAEGKGIEPFHIV 579
LG+ EL K ++P V + G DIL F W M+M L G+ V
Sbjct: 239 LGYGSDDDELFKKFWPADVHLVGKDILRFHAIYWPI--MLMAL---------GLPLPKKV 287
Query: 580 YMHA-LVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFY------------FSIMAVQG 626
+ H + KMSKSKGNVVDP +++D+YG DALR+Y FS A+
Sbjct: 288 FAHGWWLMK--DGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVE 345
Query: 627 RDINLDL 633
R IN DL
Sbjct: 346 R-INSDL 351
Score = 44.4 bits (106), Expect = 2e-04
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 48 VTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTD 84
G H+GHA+ T D + R++R++G +V + GTD
Sbjct: 15 PNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTD 51
>gnl|CDD|183390 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 75.3 bits (186), Expect = 7e-14
Identities = 84/438 (19%), Positives = 132/438 (30%), Gaps = 149/438 (34%)
Query: 369 SNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWD 428
LLD TD I P + SG T E TE ++LD AE +R+ +I S D
Sbjct: 161 GALLDPTDL---INPRSKISGSTPEFRETEHFFLDLPAFAE-RLRA-------WIESSGD 209
Query: 429 -----KSY-YEWL-ENIQPWCISRQIWWGHQIP----------VW-------YSPDGKLF 464
++ WL E ++P I+R + WG +P VW S +
Sbjct: 210 WPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVPWPGFEGKVFYVWFDAVIGYISASKEWA 269
Query: 465 VENTEDAALRS------AIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSA 518
+ A + YY + KD NI
Sbjct: 270 ERTGDPEAWKEFWLDPETKSYYF------------IGKD-NI------------------ 298
Query: 519 LWPFASLGWPEQTAELKTY-----YPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGI 573
PF S+ WP A L P ++ + + + +
Sbjct: 299 --PFHSIIWP---AMLLGSGEPLKLPDEIVSSEY----------LTL------------- 330
Query: 574 EPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDL 633
G K SKS+G + D +++Y D LR+Y + A + D +
Sbjct: 331 ---------------EGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTW 375
Query: 634 ER---------IAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATV 684
E Y N + R VP ++ +I +
Sbjct: 376 EEFVRRVNSELADKYGNLVN------RVLSFIEKYFG-GIVPPGELGDEDRELIAEAEAL 428
Query: 685 INDVTVGMENHRFNDVSAVLYRFV------WDELCDWYVEFIKSILNQKDSELVSETLSC 738
+V +E F + DE W L + D E + L
Sbjct: 429 FKEVGELLEAGEFKKALEEIMELAREANKYLDEKAPW-------KLAKTDRERAATVLYT 481
Query: 739 FSYVLYNVCKLLHPIIPF 756
++ + LL+P +PF
Sbjct: 482 ALNLVRLLAVLLYPFLPF 499
Score = 47.1 bits (113), Expect = 2e-05
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 24/132 (18%)
Query: 42 AMPPPNVTGSLHMGHAFNTTIQ-DIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFA 100
A P N G LH+GH + + D+ R++R++G VL+ G+D G T I + ++
Sbjct: 10 AWPYAN--GPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHG--TPIELAAK--- 62
Query: 101 QSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDW-SRERFTMDEGMSNAVRN 159
+E + +K E KE K+LG S D +R T V+
Sbjct: 63 -----KEGVTPQELADKYHEEHKED-------FKKLGISYDLFTR---TTSPNHHEVVQE 107
Query: 160 AFVVLYKDGLIY 171
F+ LY++G IY
Sbjct: 108 FFLKLYENGYIY 119
>gnl|CDD|161858 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
this model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain.
Length = 530
Score = 69.3 bits (170), Expect = 5e-12
Identities = 82/402 (20%), Positives = 140/402 (34%), Gaps = 86/402 (21%)
Query: 381 IVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYY-EWLEN-I 438
I P C+ G E +E ++ + + S P S K+ WL+ +
Sbjct: 165 INPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGL 224
Query: 439 QPWCISRQI-WWGHQIPVWYSPDGKLFVENTEDAALRSAIDY--YLSQDNDMTVKVRKMI 495
+ I+R + +WG IPV P+ ++V + I Y L + T +K
Sbjct: 225 KDLAITRDLVYWG--IPVPNDPNKVVYV------WFDALIGYISSLGILSGDTEDWKKWW 276
Query: 496 KDG---NISDLLKRDEDVLDTWFSSALWP--FASLGWPEQTAELKTYYPTSVLVTGFDIL 550
+ + + +D F + WP LG P PT V G
Sbjct: 277 NNDEDAELIHFIGKD----IVRFHTIYWPAMLMGLGLP---------LPTQVFSHG---- 319
Query: 551 FFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQY 610
++ G KMSKS GNVVDP D++ ++
Sbjct: 320 --------------------------YLTV--------EGGKMSKSLGNVVDPSDLLARF 345
Query: 611 GADALRFYFSIMAVQGRDINLDLERIAGYRN--FITKFWNAI-RFSKMKNARHSVSFVPQ 667
GAD LR+Y G+D + E N K N + R + +
Sbjct: 346 GADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFNGVLPSE 405
Query: 668 DVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFV------WDELCDWYVEFIK 721
D+ +K ++K + + + +E+ F + + DE W +
Sbjct: 406 DITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELF--- 462
Query: 722 SILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYS 763
K S + E L+ S ++ + LL+PI+P ++E +
Sbjct: 463 -----KQSPRLKELLAVCSMLIRVLSILLYPIMPKLSEKILK 499
Score = 54.3 bits (131), Expect = 2e-07
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 23/133 (17%)
Query: 41 IAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFA 100
I P G H+GHA+ T + D+ R++R+RG VL+ GTD G ++ E
Sbjct: 3 ITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE--G 60
Query: 101 QSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERF--TMDEGMSNAVR 158
+ D + F W+W + S +RF T DE V+
Sbjct: 61 LTPKELVDKYHEEFK-DDWKW------------------LNISFDRFIRTTDEEHKEIVQ 101
Query: 159 NAFVVLYKDGLIY 171
F L ++G IY
Sbjct: 102 KIFQKLKENGYIY 114
>gnl|CDD|117876 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 68.4 bits (168), Expect = 8e-12
Identities = 62/276 (22%), Positives = 90/276 (32%), Gaps = 92/276 (33%)
Query: 381 IVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFI---PQSWDKSYYE---- 433
I P SG T E E ++ + L +I P + E
Sbjct: 165 INPRSAISGSTPELKEEEHYFFRLSKFQDK--------LLEWIKENPDEPPSNVNEVVLS 216
Query: 434 WLEN-IQPWCISRQIWWGHQIP--------VWYSPDGKLFVENTEDAALR--SAIDYYLS 482
WL+ ++ I+R + WG +P VW+ DA + SA Y
Sbjct: 217 WLKEGLKDLSITRDLDWGIPVPGDPGKVIYVWF------------DALIGYISATKYLSG 264
Query: 483 QDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWP--FASLGWPEQTAELKTYYPT 540
K D I + +D F + WP + G P PT
Sbjct: 265 NPEKWK-KFWADDPDTEIVHFIGKD----IIRFHAIYWPAMLMAAGLPL---------PT 310
Query: 541 SVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNV 600
V G + G KMSKS+GNV
Sbjct: 311 QVFAHG------------------------------WLTV--------EGGKMSKSRGNV 332
Query: 601 VDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERI 636
VDP +++D+YG DALR+Y + A +G+D + E
Sbjct: 333 VDPDELLDRYGVDALRYYLAREAPEGKDGDFSWEDF 368
Score = 56.9 bits (138), Expect = 3e-08
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 44 PPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSS 103
P V G H+GH + T D+ R+ R+RG +VL+ GTD G ++ E
Sbjct: 6 ALPYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAE-------- 57
Query: 104 LTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERF--TMDEGMSNAVRNAF 161
+E + +++ E + K L + S + F T E V+ F
Sbjct: 58 --KEGVTPQELVDRYHE-----------EFKELFKKFNISFDDFIRTTSERHKELVQEFF 104
Query: 162 VVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVI 193
+ LY+ G IY + + S + + D V
Sbjct: 105 LKLYEKGDIYEGEYEGWYCVSDERFLPDRYVE 136
>gnl|CDD|151031 pfam10458, Val_tRNA-synt_C, Valyl tRNA synthetase tRNA binding arm.
This domain is found at the C-terminus of Valyl tRNA
synthetases.
Length = 66
Score = 62.3 bits (152), Expect = 6e-10
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 880 DFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLEN 939
D KER+RL+K L K+ E+ ++KKL N FV KAP +++ EK + ++ E++ L+
Sbjct: 1 DVEKERARLEKELAKLQKEIERLQKKLSNPGFVAKAPAEVVEEEKAKLAEYEEQLEKLKE 60
Query: 940 SLERIR 945
L ++
Sbjct: 61 RLSQLG 66
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 55.5 bits (133), Expect = 6e-08
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 20/121 (16%)
Query: 507 DEDVLDTWFSSALWPFASLGWPEQTAELKTY----YPTSVLVTGFDILFF----WVARMM 558
D+ + WF + L ++L + L+T +P S+ + G DIL F W A +M
Sbjct: 285 DKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLM 344
Query: 559 MMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFY 618
GL K +V+ H + K+G KM KS GN ++P +++ ++G DA+R++
Sbjct: 345 SAGLELPK-----------MVFGHGFL-TKDGMKMGKSLGNTLEPFELVQKFGPDAVRYF 392
Query: 619 F 619
F
Sbjct: 393 F 393
Score = 42.8 bits (100), Expect = 4e-04
Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 39 FCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAG--IATQITVES 96
F + P V HMG A+ T D + RF+R+ GK V++ GTD G IAT
Sbjct: 71 FVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANG 130
Query: 97 R-------LFAQSSLT---REDIGRDAFI 115
R + +QS T DI D FI
Sbjct: 131 RNPPEHCDIISQSYRTLWKDLDIAYDKFI 159
>gnl|CDD|178544 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 52.8 bits (127), Expect = 5e-07
Identities = 67/253 (26%), Positives = 105/253 (41%), Gaps = 54/253 (21%)
Query: 387 RSGVTIEPCI---TEQWYLDAKVLAESAIRSAKNGCLSFIPQSWD--KSYYE----WLEN 437
RSG + C+ T+QWYL E + CLS + D + +E WL
Sbjct: 523 RSG---DECVVALTDQWYL---TYGEEEWKKKAEKCLSKMNLYSDETRHGFEHTLGWL-- 574
Query: 438 IQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYY----LSQDNDMTVKVRK 493
W SR G +IP W D + +E+ D+ + A YY L Q DM K +
Sbjct: 575 -NQWACSRSFGLGTRIP-W---DEQFLIESLSDSTIYMA--YYTVAHLLQGGDMYGKDKS 627
Query: 494 MIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKT----YYPTSVLVTGFDI 549
IK ++D +V D F P +S E ++K +YP + V+G D+
Sbjct: 628 SIKPEQMTD------EVWDFVFCGGPLPKSSDIPAELLEKMKQEFEYWYPFDLRVSGKDL 681
Query: 550 LFFWVARMMMMGLY-----FMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPI 604
+ + +Y + ++ +G H ++ N +KMSKS GN +
Sbjct: 682 ----IQNHLTFAIYNHTAIWAEEHWPRGFR----CNGHLML---NSEKMSKSTGNFLTLR 730
Query: 605 DVIDQYGADALRF 617
I+++ ADA RF
Sbjct: 731 QAIEEFSADATRF 743
Score = 48.1 bits (115), Expect = 1e-05
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 12 IEQKSVEKWNSVDAFRIDVAPKLGSGV---FCIAMPPPNVTGSLHMGHAFNTTIQDIMIR 68
IE + W F + A F P P + G LH+GHAF+ + +
Sbjct: 18 IEVAVQKWWEEEKVFEAE-AGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAA 76
Query: 69 FERMRGKNVL 78
+ R+RG NVL
Sbjct: 77 YHRLRGANVL 86
Score = 34.7 bits (80), Expect = 0.12
Identities = 44/141 (31%), Positives = 59/141 (41%), Gaps = 25/141 (17%)
Query: 133 LKRLGASCDWSRERFTMDEGMSNAVRNAFV-----VLYKDGLIYRDKRIVNWDPSLKTSV 187
LK G CDW R T D N +AFV L K G I +DKR + P
Sbjct: 198 LKAFGLGCDWRRSFITTD---VNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDGQPC 254
Query: 188 SDLEVIQKEVDGNLWYVRYPLVE-GVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMF 246
+D + E G YV L++ V P K K ++ + + ++ +T RPETM+
Sbjct: 255 ADHDRASGEGVGPQEYV---LIKMEVLPPFPGKL----KALEGK-KVFLAAATLRPETMY 306
Query: 247 GDVAIAVHPDDYRYKELIGKY 267
G V PD GKY
Sbjct: 307 GQTNCWVLPD--------GKY 319
>gnl|CDD|178951 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 49.3 bits (119), Expect = 4e-06
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 589 NGQKMSKSKGNVVDPIDVIDQYGADALRFYF 619
NG+KMSKS GN D++ +Y + LRF+
Sbjct: 263 NGEKMSKSLGNFFTIRDLLKKYDPEVLRFFL 293
>gnl|CDD|178889 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 47.1 bits (113), Expect = 2e-05
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 589 NGQKMSKSKGNVVDPIDVIDQYGADALRFYF-SIMAVQGRDINLDLE 634
G KMSKS+G + +D D LR+Y + + D++ + E
Sbjct: 326 EGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWE 372
Score = 38.2 bits (90), Expect = 0.010
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 46 PNVTGSLHMGHAFNTTIQ-DIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSL 104
P G +H+GH IQ DI +R++RMRG VL+ D G + E
Sbjct: 11 PYANGPIHLGHLV-EYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAE--------- 60
Query: 105 TREDIGRDAFIEKVWE 120
+E I + I +
Sbjct: 61 -KEGITPEELIARYHA 75
Score = 31.7 bits (73), Expect = 0.93
Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 29/92 (31%)
Query: 383 PHCERSGVTIEPCITEQWYLD----AKVLAESAIRS------AKNGCLSFIPQSWDKSYY 432
P SG T +E ++ + L E RS N
Sbjct: 170 PKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSGELQPNVANKMK------------ 217
Query: 433 EWLEN-IQPWCISRQI-WWGHQIP-----VWY 457
EWLE +Q W ISR ++G +IP V+Y
Sbjct: 218 EWLEEGLQDWDISRDAPYFGFEIPGAPGKVFY 249
>gnl|CDD|179109 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed.
Length = 510
Score = 46.3 bits (111), Expect = 4e-05
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 572 GIE-PFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYF 619
G E P VY L DK G+K+SKSKGNV+ D ++ ++LR +
Sbjct: 261 GGEPPEPFVY--ELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFM 307
>gnl|CDD|161877 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln).
Length = 465
Score = 42.4 bits (100), Expect = 6e-04
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 589 NGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRD-INLDLERIAGYRNFITKFW 647
+ +KMSKS GN DV+ Y + LR++ ++V R ++ E + +N + + +
Sbjct: 262 DNEKMSKSLGNFFTVRDVLKNYDPEILRYFL--LSVHYRSPLDFSEELLEAAKNALERLY 319
Query: 648 NAIRFSKM 655
A+R
Sbjct: 320 KALRVLDT 327
>gnl|CDD|179308 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 40.5 bits (96), Expect = 0.002
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 20/85 (23%)
Query: 570 GKGIEPFHIVYMHA--LVRDKNGQKMSKSKGNVVDPIDVID-----------------QY 610
G + ++ LVR G KMS GNVV D++D
Sbjct: 298 GYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAV 357
Query: 611 GADALRFYFSIMAVQGRDINLDLER 635
G DA+R++ + + +D++ DL+
Sbjct: 358 GIDAVRYFD-LSRSRDKDLDFDLDL 381
Score = 36.3 bits (85), Expect = 0.033
Identities = 35/135 (25%), Positives = 46/135 (34%), Gaps = 29/135 (21%)
Query: 46 PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDH---AGIATQITVESRLFAQS 102
N TG LH+GH + I D + R G +V + AG TQI + S
Sbjct: 120 ANPTGPLHVGHLRSAVIGDALARILEFAGYDVT---REYYVNDAG--TQI----GMLIAS 170
Query: 103 SLTREDIGRDAFIEKVWEW-KKESGGSILSQLKRLGASCD-WSRERFTMDEGMSNAVRNA 160
+E +W S I L RLG D W E G V
Sbjct: 171 ------------LELLWRKAVDISLDEIKEDLDRLGVHFDVWFSESELYYNGK---VDEV 215
Query: 161 FVVLYKDGLIYRDKR 175
L + GL+Y +
Sbjct: 216 VEDLKEKGLLYVESD 230
>gnl|CDD|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional.
Length = 384
Score = 35.3 bits (82), Expect = 0.081
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 572 GIEPFHIVYMHALVRDKNGQKMSKSKGNVV 601
G F Y+HA + +G+KMSKS+GN+V
Sbjct: 241 GERRFARHYVHAGMIGLDGEKMSKSRGNLV 270
>gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members
of this protein family are MshC,
l-cysteine:1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an
enzyme that uses ATP to ligate a Cys residue to a
mycothiol precursor molecule, in the second to last step
in mycothiol biosynthesis. This enzyme shows
considerable homology to Cys--tRNA ligases, and many
instances are misannotated as such. Mycothiol is found
in Mycobacterium tuberculosis, Corynebacterium
glutamicum, Streptomyces coelicolor, and various other
members of the Actinobacteria. Mycothiol is an analog to
glutathione.
Length = 411
Score = 34.7 bits (80), Expect = 0.12
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 572 GIEPFHIVYMHALVRDKNGQKMSKSKGNVV 601
G+ Y+HA + +G+KMSKS GN+V
Sbjct: 268 GVRRMARHYVHAGMIGLDGEKMSKSLGNLV 297
>gnl|CDD|161886 TIGR00456, argS, arginyl-tRNA synthetase. This model recognizes
arginyl-tRNA synthetase in every completed genome to
date. An interesting feature of the alignment of all
arginyl-tRNA synthetases is a fairly deep split between
two families. One family includes archaeal, eukaryotic
and organellar, spirochete, E. coli, and Synechocystis
sp. The second, sharing a deletion of about 25 residues
in the central region relative to the first, includes
Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and
Mycobacteria, and the Gram-negative bacterium
Helicobacter pylori.
Length = 566
Score = 34.2 bits (79), Expect = 0.17
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 46 PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVL 78
N G LH+GH N I D + R G +V+
Sbjct: 121 ANPAGPLHIGHLRNAIIGDSLARILEFLGYDVI 153
>gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 33.1 bits (76), Expect = 0.38
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 881 FVKERSRLKKSLEKVLDELSSIKKKLE--NNQFVEKAPPSILQAEKERFSKVEKKRISLE 938
+K+ S L K L+++ ++L +++KL+ N + +EK + KE+ K++ + SL+
Sbjct: 488 VLKKESELIK-LKELAEQLKELEEKLKKYNLEELEKKAEE-YEKLKEKLIKLKGEIKSLK 545
Query: 939 NSLERIRML 947
LE++ L
Sbjct: 546 KELEKLEEL 554
Score = 32.3 bits (74), Expect = 0.65
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 879 VDFVKERSRLKKSLEKVLDELSSIKKKL-ENNQFVEKAPPSILQAEK----ERFSKVEKK 933
D KE R +K L+K+ +EL ++L E + +E+ + + EK E + ++ ++
Sbjct: 608 KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREE 667
Query: 934 RISLENSLERIR 945
+ L L +R
Sbjct: 668 YLELSRELAGLR 679
Score = 30.8 bits (70), Expect = 1.6
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 882 VKERSRLKKSLEKVLDELSSIKKKLEN-NQFVEKAPPSILQAE--KERFSKVEKKRISLE 938
+E +L + E+ LDEL I+K+L + + I + E +ER +++KK LE
Sbjct: 292 AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELE 351
Query: 939 NSLERI 944
LE +
Sbjct: 352 KRLEEL 357
Score = 29.6 bits (67), Expect = 4.0
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 883 KERSRLKKSLEK------VLDELSSIKKKLENNQFVEKAPPSILQAEK------ERFSKV 930
K L++ E +EL +KK+L EK + + EK E SK+
Sbjct: 352 KRLEELEERHELYEEAKAKKEELERLKKRLTGLT-PEKLEKELEELEKAKEEIEEEISKI 410
Query: 931 EKKRISLENSLERIR 945
+ L+ ++ ++
Sbjct: 411 TARIGELKKEIKELK 425
Score = 29.3 bits (66), Expect = 5.6
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 883 KERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLE 942
+E + L+ LE++ IKK LE L+ E E K +K+ LE +LE
Sbjct: 673 RELAGLRAELEELEKRREEIKKTLEK-----------LKEELEEREKAKKELEKLEKALE 721
Query: 943 RIRML 947
R+ L
Sbjct: 722 RVEEL 726
Score = 28.5 bits (64), Expect = 7.5
Identities = 14/69 (20%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 880 DFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVE---KKRIS 936
+ K+ + L+K L+++ +EL+ + K+LE F ++ +ER ++E + +
Sbjct: 553 ELKKKLAELEKKLDELEEELAELLKELEELGF------ESVEELEERLKELEPFYNEYLE 606
Query: 937 LENSLERIR 945
L+++ + +
Sbjct: 607 LKDAEKELE 615
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 32.6 bits (74), Expect = 0.53
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 589 NGQKMSKSKGNVVDPIDVIDQYGADALRFYF 619
+ +KMSKS GN VID Y ALR +
Sbjct: 320 DSEKMSKSLGNFFTIRQVIDLYHPLALRLFL 350
>gnl|CDD|178220 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 30.9 bits (70), Expect = 1.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 46 PNVTGSLHMGHAFNTTIQ-DIMIRFERMRGKNVLWQPGTDHAGIATQ 91
P V H+G+ + D+ R+ R+RG N ++ GTD G AT+
Sbjct: 26 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATE 72
>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 699
Score = 30.8 bits (69), Expect = 1.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 589 NGQKMSKSKGNVVDPIDVIDQYGADALRFY 618
+G+KMSKS GN +V+ QY + +RF+
Sbjct: 505 DGEKMSKSLGNFFTIREVLKQYDPEVVRFF 534
>gnl|CDD|180216 PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetase; Reviewed.
Length = 299
Score = 30.2 bits (69), Expect = 2.4
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 579 VYMH-ALVRDKNGQKMSKSKGNVVDPIDVID--QYGADALRF 617
Y+H LV + +GQK+SK G +D A ALRF
Sbjct: 222 RYLHLPLVLNADGQKLSKQNGAP--ALDAAGPLPVLAAALRF 261
>gnl|CDD|131452 TIGR02399, salt_tol_Pase, glucosylglycerol 3-phosphatase. Proteins
in this family are glucosylglycerol-phosphate
phosphatase, with the gene symbol stpA (Salt Tolerance
Protein A). A motif characteristic of acid phosphatases
is found, but otherwise this family shows little
sequence similarity to other phosphatases. This enzyme
acts on the glucosylglycerol phosphate, product of
glucosylglycerol phosphate synthase and immediate
precursor of the osmoprotectant glucosylglycerol.
Length = 389
Score = 30.2 bits (68), Expect = 2.7
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 880 DFVKERSRLKKSLEKVLDEL--SSIKKKLENNQFVEKAP 916
D + R L+KS E +++EL + + LEN+ F+ AP
Sbjct: 166 DDSEIRKILQKSFEDLMNELMYKAKTQGLENSFFLHIAP 204
>gnl|CDD|185597 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 30.0 bits (68), Expect = 3.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 589 NGQKMSKSKGNVVDPIDVIDQYGADALRFYF 619
G KMSKS N + + +Y A +R F
Sbjct: 312 KGLKMSKSLKNFITIRQALSKYTARQIRLLF 342
>gnl|CDD|151091 pfam10546, P63C, P63C domain. This domain was identified by Iyer
and colleagues.
Length = 94
Score = 29.3 bits (66), Expect = 4.8
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 640 RNFITKFWNAI-RFSKMKNARHSVSFVPQDVKWIVNKWIIKRLA 682
+ F F+ I R + S P I N + +RLA
Sbjct: 15 KRFPDDFYEEIFRLRGLPYPPKSPGRRPGVFGKITNDIVYERLA 58
>gnl|CDD|183692 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 29.4 bits (67), Expect = 5.1
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 880 DFVKERSRLKKSLEKVLDELSSIKKKLEN----NQFVEKAPPSILQAEKE---RFSKVEK 932
+ + R+ L+K +++L + ++ +KLE + +EK + Q ++E + ++E+
Sbjct: 76 ELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEE 135
Query: 933 KRISLENSLERI 944
LERI
Sbjct: 136 LIEEQLQELERI 147
>gnl|CDD|183090 PRK11339, abgT, putative aminobenzoyl-glutamate transporter;
Provisional.
Length = 508
Score = 29.0 bits (65), Expect = 5.6
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 532 AELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEP 575
A+L TYY LV + ++F V +M++ Y + G GI P
Sbjct: 465 AKLGTYY---SLVLPYPLIFLVVWLLMLLAWYLVGLPIGPGIYP 505
>gnl|CDD|181914 PRK09502, iscA, iron-sulfur cluster assembly protein; Provisional.
Length = 107
Score = 29.1 bits (65), Expect = 5.7
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 843 IDRLSSGNIIFADCPPDRSIQIILDGMVLFLAIGDFVDFVKE 884
+D + +I+F D + +++++DG L G +DFVKE
Sbjct: 45 VDEPTPEDIVFED----KGVKVVVDGKSLQFLDGTQLDFVKE 82
>gnl|CDD|152908 pfam12474, PKK, Polo kinase kinase. This domain family is found in
eukaryotes, and is approximately 140 amino acids in
length. The family is found in association with
pfam00069. Polo-like kinase 1 (Plx1) is essential during
mitosis for the activation of Cdc25C, for spindle
assembly, and for cyclin B degradation. This family is
Polo kinase kinase (PKK) which phosphorylates Polo
kinase and Polo-like kinase to activate them. PKK is a
serine/threonine kinase.
Length = 142
Score = 28.8 bits (65), Expect = 6.8
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 881 FVKERSRLKKSLEKVLDELSSIKK----KLENNQFVE-KAPPSILQAEKERFSKVEKKRI 935
F ER +L K EK L++L +K KLE Q E + P ++AE++ K+ K+ +
Sbjct: 13 FFLERHQLLKRHEKELEQLERQQKRTIEKLEQRQTQELRRLPKRIRAEQKTRLKMFKESL 72
Query: 936 SLENSL 941
+E
Sbjct: 73 KIEKKE 78
>gnl|CDD|161892 TIGR00467, lysS_arch, lysyl-tRNA synthetase, archaeal and
spirochete. This model represents the lysyl-tRNA
synthetases that are class I amino-acyl tRNA
synthetases. It includes archaeal and spirochete
examples of the enzyme. All other known examples are
class IIc amino-acyl tRNA synthetases and seem to form a
separate orthologous set.
Length = 515
Score = 28.3 bits (63), Expect = 8.5
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 572 GIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINL 631
P + Y ++ K G KMS SKG+V+ DV++ Y + RF F I+
Sbjct: 255 YSPPVTVQYEWISLKGK-GGKMSSSKGDVISVKDVLEVYTPEITRFLF-ARTKPEFHISF 312
Query: 632 DLERIAGYRNF 642
DL+ I Y ++
Sbjct: 313 DLDVIKLYEDY 323
>gnl|CDD|180311 PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.
Length = 408
Score = 28.5 bits (65), Expect = 9.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 589 NGQKMSKSKGNVV 601
+G+KM KS+GN V
Sbjct: 229 DGKKMGKSEGNAV 241
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.138 0.424
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 15,984,184
Number of extensions: 1077779
Number of successful extensions: 2463
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2300
Number of HSP's successfully gapped: 117
Length of query: 947
Length of database: 5,994,473
Length adjustment: 102
Effective length of query: 845
Effective length of database: 3,790,457
Effective search space: 3202936165
Effective search space used: 3202936165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.8 bits)