HHsearch alignment for GI: 254780934 and conserved domain: TIGR01651
>TIGR01651 CobT cobaltochelatase, CobT subunit; InterPro: IPR006538 These proteins are CobT subunits of the aerobic cobalt chelatase (aerobic cobalamin biosynthesis pathway). Pseudomonas denitrificans CobT has been experimentally characterised , . Aerobic cobalt chelatase consists of three subunits, CobT, CobN (IPR003672 from INTERPRO) and CobS (IPR006537 from INTERPRO). Cobalamin (vitamin B12) can be complexed with metal via the ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. However, aerobic cobalt chelatase subunits CobN and CobS are homologous to Mg-chelatase subunits BchH and BchI, respectively . CobT, too, has been found to be remotely related to the third subunit of Mg-chelatase, BchD (involved in bacteriochlorophyll synthesis, e.g., in Rhodobacter capsulatus) . Nomenclature note: CobT of the aerobic pathway Pseudomonas denitrificans is not a homolog of CobT of the anaerobic pathway (Salmonella typhimurium, Escherichia coli). Therefore, annotation of any members of this family as nicotinate-mononucleotide--5,6-dimethylbenzimidazole phosphoribosyltransferases is erroneous. .
Probab=96.68 E-value=0.0054 Score=36.43 Aligned_cols=83 Identities=16% Similarity=0.262 Sum_probs=47.5
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCC--------CCCCCH-HHHHHHHHH-HHCCCEEEEEE
Q ss_conf 44-20367677643222333310257886564279998068778--------888806-899999999-97898799999
Q gi|254780934|r 258 NS-TPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENL--------STKEDQ-QSLYYCNEA-KKRGAIVYAIG 326 (374)
Q Consensus 258 ~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~--------~~~~~~-~~~~~~~~~-k~~gi~IytIg 326 (374)
T Consensus 502 NIDGEAL~WAH~RliAR-----------~EQRrILM~ISDGAPVDDSTLSVN~G~YLERHLR~VI~~IEtrSPVELlAIG 570 (606)
T TIGR01651 502 NIDGEALLWAHERLIAR-----------PEQRRILMMISDGAPVDDSTLSVNPGNYLERHLRAVIEEIETRSPVELLAIG 570 (606)
T ss_pred CCCHHHHHHHHHHHHCC-----------HHHCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 56467999886664147-----------2047587776278886645235478506789999999862377870002323
Q ss_pred ECCCCCHHHHHHHCCCCCEEEECCHHHHHHHH
Q ss_conf 24822278899823898179838989999999
Q gi|254780934|r 327 IRVIRSHEFLRACASPNSFYLVENPHSMYDAF 358 (374)
Q Consensus 327 ~~~~~~~~~L~~~As~~~~~~a~~~~~L~~~f 358 (374)
T Consensus 571 IGHDVTR-YYRRAVT------IVD~e~LaG~~ 595 (606)
T TIGR01651 571 IGHDVTR-YYRRAVT------IVDAEELAGAL 595 (606)
T ss_pred CCCCCCC-EECCEEE------EEEHHHHHHHH
T ss_conf 4434220-0000143------76144530189