HHsearch alignment for GI: 254780934 and conserved domain: cd01459

>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=95.15  E-value=0.21  Score=26.92  Aligned_cols=151  Identities=15%  Similarity=0.151  Sum_probs=82.6

Q ss_pred             CCCEEEEEEECCCCCCCCCC---------CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEE----EE
Q ss_conf             78724999965786451131---------353137999999887632210023665673489999826850561----02
Q gi|254780934|r  169 DARLDMMIVLDVSRSMESFF---------DSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEF----FL  235 (374)
Q Consensus       169 ~~~~di~~VlD~SgSM~~~~---------~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  235 (374)
T Consensus        29 G~einlivaIDFT~SNg~p~~~~SLHy~~~~~~N~Y~~aI~~vg~iL~~YD~------Dk~~p~yGFGa~~~~~~~~~~~  102 (254)
T cd01459          29 GLESNLIVAIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQPYDS------DKLIPAFGFGAIVTKDQSVFSF  102 (254)
T ss_pred             CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC------CCCEEEECCCCCCCCCCEEECC
T ss_conf             9688589999707868998999885458999989999999999999863277------8811301123113999757357


Q ss_pred             C--------CCCHH----HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf             0--------47868----99999860133687744420367677643222333310257886564279998068778888
Q gi|254780934|r  236 L--------EWGVS----HLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTK  303 (374)
Q Consensus       236 ~--------t~~~~----~~~~~i~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~  303 (374)
T Consensus       103 ~~~~~~~p~~~G~~gvl~aY~~~l~~v~lsG-PT~FapiI~~a~~~a~~~~---------~~~~Y~ILlIiTDG~i~D--  170 (254)
T cd01459         103 FPGYSESPECQGFEGVLRAYREALPNVSLSG-PTNFAPVIRAAANIAKASN---------SQSKYHILLIITDGEITD--  170 (254)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCCCEECC-CCCHHHHHHHHHHHHHHHC---------CCCEEEEEEEECCCCCCC--
T ss_conf             7799999965599999999998607437648-8605999999999999732---------487089999980796367--


Q ss_pred             CCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHH
Q ss_conf             806899999999978987999992482227889982
Q gi|254780934|r  304 EDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRAC  339 (374)
Q Consensus       304 ~~~~~~~~~~~~k~~gi~IytIg~~~~~~~~~L~~~  339 (374)
T Consensus       171 -~~~Ti~aIv~AS~~PlSIIiVGVGd-~dF~~M~~l  204 (254)
T cd01459         171 -MNETIKAIVEASKYPLSIVIVGVGD-GPFDAMERL  204 (254)
T ss_pred             -HHHHHHHHHHHCCCCEEEEEEEECC-CCHHHHHHH
T ss_conf             -8999999999717981799997368-882778873