HHsearch alignment for GI: 254780934 and conserved domain: cd01459
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=95.15 E-value=0.21 Score=26.92 Aligned_cols=151 Identities=15% Similarity=0.151 Sum_probs=82.6
Q ss_pred CCCEEEEEEECCCCCCCCCC---------CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEE----EE
Q ss_conf 78724999965786451131---------353137999999887632210023665673489999826850561----02
Q gi|254780934|r 169 DARLDMMIVLDVSRSMESFF---------DSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEF----FL 235 (374)
Q Consensus 169 ~~~~di~~VlD~SgSM~~~~---------~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 235 (374)
T Consensus 29 G~einlivaIDFT~SNg~p~~~~SLHy~~~~~~N~Y~~aI~~vg~iL~~YD~------Dk~~p~yGFGa~~~~~~~~~~~ 102 (254)
T cd01459 29 GLESNLIVAIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQPYDS------DKLIPAFGFGAIVTKDQSVFSF 102 (254)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC------CCCEEEECCCCCCCCCCEEECC
T ss_conf 9688589999707868998999885458999989999999999999863277------8811301123113999757357
Q ss_pred C--------CCCHH----HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 0--------47868----99999860133687744420367677643222333310257886564279998068778888
Q gi|254780934|r 236 L--------EWGVS----HLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTK 303 (374)
Q Consensus 236 ~--------t~~~~----~~~~~i~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~ 303 (374)
T Consensus 103 ~~~~~~~p~~~G~~gvl~aY~~~l~~v~lsG-PT~FapiI~~a~~~a~~~~---------~~~~Y~ILlIiTDG~i~D-- 170 (254)
T cd01459 103 FPGYSESPECQGFEGVLRAYREALPNVSLSG-PTNFAPVIRAAANIAKASN---------SQSKYHILLIITDGEITD-- 170 (254)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCEECC-CCCHHHHHHHHHHHHHHHC---------CCCEEEEEEEECCCCCCC--
T ss_conf 7799999965599999999998607437648-8605999999999999732---------487089999980796367--
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHH
Q ss_conf 806899999999978987999992482227889982
Q gi|254780934|r 304 EDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRAC 339 (374)
Q Consensus 304 ~~~~~~~~~~~~k~~gi~IytIg~~~~~~~~~L~~~ 339 (374)
T Consensus 171 -~~~Ti~aIv~AS~~PlSIIiVGVGd-~dF~~M~~l 204 (254)
T cd01459 171 -MNETIKAIVEASKYPLSIVIVGVGD-GPFDAMERL 204 (254)
T ss_pred -HHHHHHHHHHHCCCCEEEEEEEECC-CCHHHHHHH
T ss_conf -8999999999717981799997368-882778873