HHsearch alignment for GI: 254780934 and conserved domain: cd01464
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.88 E-value=2.9e-21 Score=145.17 Aligned_cols=173 Identities=18% Similarity=0.205 Sum_probs=131.5
Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCCCHHHHHHHHHHC
Q ss_conf 72499996578645113135313799999988763221002366567348999982685056102047868999998601
Q gi|254780934|r 171 RLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQRKIKYL 250 (374)
Q Consensus 171 ~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~i~~l 250 (374)
T Consensus 3 rlpvvlvlD~SGSM~G~------~i~~~k~al~~~~~~L~~d~~a~~~~~vsVItF~s~a~~~~pl~~~---~~~~~~~L 73 (176)
T cd01464 3 RLPIYLLLDTSGSMAGE------PIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIVPLTPL---ESFQPPRL 73 (176)
T ss_pred CCCEEEEEECCCCCCCH------HHHHHHHHHHHHHHHHHCCCCCHHEEEEEEEEECCCEEEECCCCCH---HHCCCCCC
T ss_conf 35789999789999984------7999999999999997118310113269999978951780586347---66475547
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 33687744420367677643222333310257886564279998068778888806899999999978987999992482
Q gi|254780934|r 251 SKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVI 330 (374)
Q Consensus 251 ~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~~~~ 330 (374)
T Consensus 74 ~a~G-~T~~g~al~~a~~~l~~~~~~~~--~~~~~~~~P~I~LlTDG~PtD--~~~~~~~~~~~~~~~~~~i~a~giG~d 148 (176)
T cd01464 74 TASG-GTSMGAALELALDCIDRRVQRYR--ADQKGDWRPWVFLLTDGEPTD--DLTAAIERIKEARDSKGRIVACAVGPK 148 (176)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCEEEEEECCCCCCC--CHHHHHHHHHHHHHCCCEEEEEEEECC
T ss_conf 7789-98199999999999998652236--556677531799966899887--589999999988863976999997387
Q ss_pred CCHHHHHHHCCCCCEEEECCHHHHHHHHH
Q ss_conf 22788998238981798389899999999
Q gi|254780934|r 331 RSHEFLRACASPNSFYLVENPHSMYDAFS 359 (374)
Q Consensus 331 ~~~~~L~~~As~~~~~~a~~~~~L~~~f~ 359 (374)
T Consensus 149 ad~~~L~~is~~--~~~~~~~~~f~~ff~ 175 (176)
T cd01464 149 ADLDTLKQITEG--VPLLDDALSGLNFFK 175 (176)
T ss_pred CCHHHHHHHHCC--CCCCCCHHHHHHHHC
T ss_conf 189999988577--745345345888508