HHsearch alignment for GI: 254780934 and conserved domain: cd01466
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.92 E-value=9.2e-24 Score=160.08 Aligned_cols=149 Identities=23% Similarity=0.285 Sum_probs=122.0
Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCC----CHHHHHHHH
Q ss_conf 2499996578645113135313799999988763221002366567348999982685056102047----868999998
Q gi|254780934|r 172 LDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEW----GVSHLQRKI 247 (374)
Q Consensus 172 ~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~----~~~~~~~~i 247 (374)
T Consensus 1 ~div~vlD~SGSM~g~------~l~~~k~a~~~~~~~L~~------~d~v~iV~F~~~a~~~~pl~~~~~~~~~~~~~~i 68 (155)
T cd01466 1 VDLVAVLDVSGSMAGD------KLQLVKHALRFVISSLGD------ADRLSIVTFSTSAKRLSPLRRMTAKGKRSAKRVV 68 (155)
T ss_pred CEEEEEEECCCCCCCH------HHHHHHHHHHHHHHHCCC------CCEEEEEEECCCCEEEECCEECCHHHHHHHHHHH
T ss_conf 9399999089898873------899999999999984897------6748999956874262046037999999999987
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 60133687744420367677643222333310257886564279998068778888806899999999978987999992
Q gi|254780934|r 248 KYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGI 327 (374)
Q Consensus 248 ~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~ 327 (374)
T Consensus 69 ~~l~~~G-gT~i~~gl~~a~~~l~~~~---------~~~~~~~IiLlTDG~~n~~-------~~~~~~~~~~i~i~tiGi 131 (155)
T cd01466 69 DGLQAGG-GTNVVGGLKKALKVLGDRR---------QKNPVASIMLLSDGQDNHG-------AVVLRADNAPIPIHTFGL 131 (155)
T ss_pred HCCCCCC-CCCHHHHHHHHHHHHHHCC---------CCCCCEEEEEECCCCCCHH-------HHHHHHHCCCCEEEEEEE
T ss_conf 5377688-8726799999999998436---------6898308999826986405-------778998717973999997
Q ss_pred CCCCCHHHHHHHC--CCCCEEEEC
Q ss_conf 4822278899823--898179838
Q gi|254780934|r 328 RVIRSHEFLRACA--SPNSFYLVE 349 (374)
Q Consensus 328 ~~~~~~~~L~~~A--s~~~~~~a~ 349 (374)
T Consensus 132 G~~~d~~lL~~iA~~~gG~~~~v~ 155 (155)
T cd01466 132 GASHDPALLAFIAEITGGTFSYVK 155 (155)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf 886789999999976997799949