HHsearch alignment for GI: 254780934 and conserved domain: cd01467
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.96 E-value=3.7e-27 Score=180.27 Aligned_cols=164 Identities=21% Similarity=0.264 Sum_probs=136.7
Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCCCHHHHHHHHHHC
Q ss_conf 72499996578645113135313799999988763221002366567348999982685056102047868999998601
Q gi|254780934|r 171 RLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQRKIKYL 250 (374)
Q Consensus 171 ~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~i~~l 250 (374)
T Consensus 2 G~dvvlvlD~SgSM~~~d~~~~~rl~~ak~~~~~~i~~~~-------~drvglv~Fs~~a~~~~plT~d~~~~~~~l~~i 74 (180)
T cd01467 2 GRDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDRRE-------NDRIGLVVFAGAAFTQAPLTLDRESLKELLEDI 74 (180)
T ss_pred CCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-------CCEEEEEEECCCCEEECCCCCCHHHHHHHHHCC
T ss_conf 6279999989847578666785899999999999997199-------975999997287367337665689999998622
Q ss_pred CC--CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 33--6877444203676776432223333102578865642799980687788888068999999999789879999924
Q gi|254780934|r 251 SK--FGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIR 328 (374)
Q Consensus 251 ~~--~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~~ 328 (374)
T Consensus 75 ~~~~~~ggT~i~~al~~a~~~l~~~-----------~~~~~~ivLlTDG~~n~g~~~--~~~~~~~a~~~gi~v~tIGvG 141 (180)
T cd01467 75 KIGLAGQGTAIGDAIGLAIKRLKNS-----------EAKERVIVLLTDGENNAGEID--PATAAELAKNKGVRIYTIGVG 141 (180)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCC-----------CCCCCEEEEEECCCCCCCCCC--HHHHHHHHHHCCCEEEEEEEC
T ss_conf 4453236860899999999976424-----------766637999805886678769--999999999769989999977
Q ss_pred CCC-----------CHHHHHHHC--CCCCEEEECCHHHH
Q ss_conf 822-----------278899823--89817983898999
Q gi|254780934|r 329 VIR-----------SHEFLRACA--SPNSFYLVENPHSM 354 (374)
Q Consensus 329 ~~~-----------~~~~L~~~A--s~~~~~~a~~~~~L 354 (374)
T Consensus 142 ~~~~~~~~~~~~~~d~~~L~~iA~~tgG~yy~a~~~~eL 180 (180)
T cd01467 142 KSGSGPKPDGSTILDEDSLVEIADKTGGRIFRALDGFEL 180 (180)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCHHHC
T ss_conf 898887688876559999999999619979972874649