>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.

Probab=99.84 E-value=1.2e-18 Score=129.64 Aligned_cols=178 Identities=17% Similarity=0.241 Sum_probs=132.7 Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEC----CCCHHHHHHH Q ss_conf 24999965786451131353137999-999887632210023665673489999826850561020----4786899999 Q gi|254780934|r 172 LDMMIVLDVSRSMESFFDSSITKIDM-AIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLL----EWGVSHLQRK 246 (374) Q Consensus 172 ~di~~VlD~SgSM~~~~~~~~~ki~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----t~~~~~~~~~ 246 (374) T Consensus 1 ~DivFllD~S~SIg~~------nf~~~v~~F~~~lv~~f~---Ig~~~~rvgvv~yS~~~~~~~~f~~~~~~~k~~~l~~ 71 (192) T cd01473 1 YDLTLILDESASIGYS------NWRKDVIPFTEKIINNLN---ISKDKVHVGILLFAEKNRDVVPFSDEERYDKNELLKK 71 (192) T ss_pred CCEEEEEECCCCCCHH------HHHHHHHHHHHHHHHHCC---CCCCCEEEEEEEECCCCCEEEECCCCCCCCHHHHHHH T ss_conf 9789999389986667------769999999999998756---5989619999995588740132355443489999999 Q ss_pred HHHCC---CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEE Q ss_conf 86013---368774442036767764322233331025788656427999806877888880689999999997898799 Q gi|254780934|r 247 IKYLS---KFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVY 323 (374) Q Consensus 247 i~~l~---~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~Iy 323 (374) T Consensus 72 i~~l~~~~~~gg~T~tg~AL~~~~~~~~~~~-------g~R~~vpkv~IvlTDG~s~~~-~~~~~~~~a~~lr~~gV~i~ 143 (192) T cd01473 72 INDLKNSYRSGGETYIVEALKYGLKNYTKHG-------NRRKDAPKVTMLFTDGNDTSA-SKKELQDISLLYKEENVKLL 143 (192) T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC-------CCCCCCCEEEEEEECCCCCCC-CHHHHHHHHHHHHHCCCEEE T ss_conf 9998731468982479999999999863467-------888899749999956998873-16789999999998797899 Q ss_pred EEEECCCCCHHHHHHHCC-C--C---CEEEECCHHHHHHHHHHHHHHHHE Q ss_conf 999248222788998238-9--8---179838989999999999984200 Q gi|254780934|r 324 AIGIRVIRSHEFLRACAS-P--N---SFYLVENPHSMYDAFSHIGKDIVT 367 (374) Q Consensus 324 tIg~~~~~~~~~L~~~As-~--~---~~~~a~~~~~L~~~f~~I~~~i~~ 367 (374) T Consensus 144 avGVg~-~~~~eL~~iag~~~~~~~c~~~~~~~fd~l~~i~~~l~~~vC~ 192 (192) T cd01473 144 VVGVGA-ASENKLKLLAGCDINNDNCPNVIKTEWNNLNGISKFLTDKICD 192 (192) T ss_pred EEEECC-CCHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCC T ss_conf 998063-7999999986999889977579947978999999999997249

HHsearch alignment for GI: 254780934 and conserved domain: cd01473