>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

Probab=99.91 E-value=1.7e-22 Score=152.50 Aligned_cols=180 Identities=19% Similarity=0.323 Sum_probs=148.0 Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECC--CCHHHHHHHH Q ss_conf 87249999657864511313531379999998876322100236656734899998268505610204--7868999998 Q gi|254780934|r 170 ARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLE--WGVSHLQRKI 247 (374) Q Consensus 170 ~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~~~i 247 (374) T Consensus 1 gplDlvFllD~S~Svg~~------nF~~~k~Fv~~lv~~f~I---~~~~trVgvv~ys~~~~~~f~l~~~~~k~~l~~aI 71 (224) T cd01475 1 GPTDLVFLIDSSRSVRPE------NFELVKQFLNQIIDSLDV---GPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAV 71 (224) T ss_pred CCEEEEEEEECCCCCCHH------HHHHHHHHHHHHHHHCCC---CCCCEEEEEEEECCCEEEEEECCCCCCHHHHHHHH T ss_conf 974399999488998989------999999999999985687---99852999999658278999668867889999999 Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 60133687744420367677643222333310257886564279998068778888806899999999978987999992 Q gi|254780934|r 248 KYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGI 327 (374) Q Consensus 248 ~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~ 327 (374) T Consensus 72 ~~i~~~gggT~Tg~AL~~~~~~~f~~~~G~Rp---~~~~vpkvlIviTDG~s~D-----~v~~~A~~lr~~GV~ifaVGV 143 (224) T cd01475 72 RRMEYLETGTMTGLAIQYAMNNAFSEAEGARP---GSERVPRVGIVVTDGRPQD-----DVSEVAAKARALGIEMFAVGV 143 (224) T ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCC---CCCCCCEEEEEECCCCCCC-----CHHHHHHHHHHCCCEEEEEEC T ss_conf 86361388446999999999972770239987---5568985999971798766-----389999999987988999963 Q ss_pred CCCCCHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHHHHE Q ss_conf 482227889982389---8179838989999999999984200 Q gi|254780934|r 328 RVIRSHEFLRACASP---NSFYLVENPHSMYDAFSHIGKDIVT 367 (374) Q Consensus 328 ~~~~~~~~L~~~As~---~~~~~a~~~~~L~~~f~~I~~~i~~ 367 (374) T Consensus 144 g~-~~~~eL~~IAs~P~~~hvf~v~~F~~l~~l~~~l~~~iC~ 185 (224) T cd01475 144 GR-ADEEELREIASEPLADHVFYVEDFSTIEELTKKFQGKICV 185 (224) T ss_pred CC-CCHHHHHHHHCCCCHHCEEEECCHHHHHHHHHHHHHHHCC T ss_conf 74-7989999985597375689947988999999998761189

HHsearch alignment for GI: 254780934 and conserved domain: cd01475