HHsearch alignment for GI: 254780934 and conserved domain: cd01476
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.77 E-value=5.5e-17 Score=119.74 Aligned_cols=153 Identities=21% Similarity=0.284 Sum_probs=116.1
Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEE--EEC--CCCHHHHHHHH
Q ss_conf 24999965786451131353137999999887632210023665673489999826850561--020--47868999998
Q gi|254780934|r 172 LDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEF--FLL--EWGVSHLQRKI 247 (374)
Q Consensus 172 ~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--t~~~~~~~~~i 247 (374)
T Consensus 1 lDl~fllD~S~Sv~~-------~f~~~k~F~~~lv~~f~i---~~~~~rVgvv~ys~~~~~~i~f~l~~~~~~~~l~~~I 70 (163)
T cd01476 1 LDLLFVLDSSGSVRG-------KFEKYKKYIERIVEGLEI---GPTATRVALITYSGRGRQRVRFNLPKHNDGEELLEKV 70 (163)
T ss_pred CCEEEEEECCCCHHH-------HHHHHHHHHHHHHHHHCC---CCCCEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 929999918888667-------399999999999996146---8885389999966987078887577779999999999
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH-CCCEEEEEE
Q ss_conf 6013368774442036767764322233331025788656427999806877888880689999999997-898799999
Q gi|254780934|r 248 KYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKK-RGAIVYAIG 326 (374)
Q Consensus 248 ~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~-~gi~IytIg 326 (374)
T Consensus 71 ~~i~~~~g~T~tg~AL~~a~~~~~~~~-------g~R~~~~kv~vviTDG~s~d~-----~~~~a~~lr~~~gv~v~avg 138 (163)
T cd01476 71 DNLRFIGGTTATGAAIEVALQQLDPSE-------GRREGIPKVVVVLTDGRSHDD-----PEKQARILRAVPNIETFAVG 138 (163)
T ss_pred HHEECCCCCCCHHHHHHHHHHHHHHHC-------CCCCCCEEEEEEEECCCCCCC-----HHHHHHHHHHHCCCEEEEEE
T ss_conf 752036898548999999999721420-------678996169999818987664-----88999999970998999998
Q ss_pred ECC--CCCHHHHHHHCCC-CCEE
Q ss_conf 248--2227889982389-8179
Q gi|254780934|r 327 IRV--IRSHEFLRACASP-NSFY 346 (374)
Q Consensus 327 ~~~--~~~~~~L~~~As~-~~~~ 346 (374)
T Consensus 139 VG~~~~~d~~eL~~Ia~~~~~Vf 161 (163)
T cd01476 139 TGDPGTVDTEELHSITGNEDHIF 161 (163)
T ss_pred ECCCCCCCHHHHHHHCCCCCCCC
T ss_conf 38865015999998649972545