HHsearch alignment for GI: 254780934 and conserved domain: cd01482
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.80 E-value=6.9e-18 Score=125.11 Aligned_cols=157 Identities=20% Similarity=0.286 Sum_probs=124.1
Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECC--CCHHHHHHHHHHC
Q ss_conf 49999657864511313531379999998876322100236656734899998268505610204--7868999998601
Q gi|254780934|r 173 DMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLE--WGVSHLQRKIKYL 250 (374)
Q Consensus 173 di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~~~i~~l 250 (374)
T Consensus 2 DlvfllD~S~Si~~~------~f~~~k~fi~~lv~~f~i---~~~~~rvgvv~ys~~~~~~~~l~~~~~~~~l~~~i~~i 72 (164)
T cd01482 2 DIVFLVDGSWSIGRS------NFNLVRSFLSSVVEAFEI---GPDGVQVGLVQYSDDPRTEFDLNAYTSKEDVLAAIKNL 72 (164)
T ss_pred CEEEEEECCCCCCHH------HHHHHHHHHHHHHHHCCC---CCCCEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHC
T ss_conf 799999698998889------999999999999996476---88862899999447512787343469989999998640
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 33687744420367677643222333310257886564279998068778888806899999999978987999992482
Q gi|254780934|r 251 SKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVI 330 (374)
Q Consensus 251 ~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~~~~ 330 (374)
T Consensus 73 ~~~~g~t~~~~AL~~~~~~~f~~~~g------~R~~~~kvlvliTDG~s~-----d~~~~~a~~lr~~gv~i~~VGVg~- 140 (164)
T cd01482 73 PYKGGNTRTGKALTHVREKNFTPDAG------ARPGVPKVVILITDGKSQ-----DDVELPARVLRNLGVNVFAVGVKD- 140 (164)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCHHCC------CCCCCCEEEEEECCCCCC-----CHHHHHHHHHHHCCCEEEEEECCC-
T ss_conf 26689972899999999986150028------988886079996079884-----338999999998893899997883-
Q ss_pred CCHHHHHHHCCC---CCEEEECC
Q ss_conf 227889982389---81798389
Q gi|254780934|r 331 RSHEFLRACASP---NSFYLVEN 350 (374)
Q Consensus 331 ~~~~~L~~~As~---~~~~~a~~ 350 (374)
T Consensus 141 ~~~~eL~~IAs~P~~~hvf~~~~ 163 (164)
T cd01482 141 ADESELKMIASKPSETHVFNVAD 163 (164)
T ss_pred CCHHHHHHHHCCCCHHCEEECCC
T ss_conf 78999999968985661797479