HHsearch alignment for GI: 254780934 and conserved domain: cd01482

>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.80  E-value=6.9e-18  Score=125.11  Aligned_cols=157  Identities=20%  Similarity=0.286  Sum_probs=124.1

Q ss_pred             EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECC--CCHHHHHHHHHHC
Q ss_conf             49999657864511313531379999998876322100236656734899998268505610204--7868999998601
Q gi|254780934|r  173 DMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLE--WGVSHLQRKIKYL  250 (374)
Q Consensus       173 di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~~~i~~l  250 (374)
T Consensus         2 DlvfllD~S~Si~~~------~f~~~k~fi~~lv~~f~i---~~~~~rvgvv~ys~~~~~~~~l~~~~~~~~l~~~i~~i   72 (164)
T cd01482           2 DIVFLVDGSWSIGRS------NFNLVRSFLSSVVEAFEI---GPDGVQVGLVQYSDDPRTEFDLNAYTSKEDVLAAIKNL   72 (164)
T ss_pred             CEEEEEECCCCCCHH------HHHHHHHHHHHHHHHCCC---CCCCEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHC
T ss_conf             799999698998889------999999999999996476---88862899999447512787343469989999998640


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             33687744420367677643222333310257886564279998068778888806899999999978987999992482
Q gi|254780934|r  251 SKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVI  330 (374)
Q Consensus       251 ~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~~~~  330 (374)
T Consensus        73 ~~~~g~t~~~~AL~~~~~~~f~~~~g------~R~~~~kvlvliTDG~s~-----d~~~~~a~~lr~~gv~i~~VGVg~-  140 (164)
T cd01482          73 PYKGGNTRTGKALTHVREKNFTPDAG------ARPGVPKVVILITDGKSQ-----DDVELPARVLRNLGVNVFAVGVKD-  140 (164)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCHHCC------CCCCCCEEEEEECCCCCC-----CHHHHHHHHHHHCCCEEEEEECCC-
T ss_conf             26689972899999999986150028------988886079996079884-----338999999998893899997883-


Q ss_pred             CCHHHHHHHCCC---CCEEEECC
Q ss_conf             227889982389---81798389
Q gi|254780934|r  331 RSHEFLRACASP---NSFYLVEN  350 (374)
Q Consensus       331 ~~~~~L~~~As~---~~~~~a~~  350 (374)
T Consensus       141 ~~~~eL~~IAs~P~~~hvf~~~~  163 (164)
T cd01482         141 ADESELKMIASKPSETHVFNVAD  163 (164)
T ss_pred             CCHHHHHHHHCCCCHHCEEECCC
T ss_conf             78999999968985661797479