HHsearch alignment for GI: 254780934 and conserved domain: pfam03731

>pfam03731 Ku_N Ku70/Ku80 N-terminal alpha/beta domain. The Ku heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the amino terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold.
Probab=94.40  E-value=0.33  Score=25.78  Aligned_cols=187  Identities=16%  Similarity=0.181  Sum_probs=93.1

Q ss_pred             EEEEEECCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCE----------EEEECCC-CH
Q ss_conf             49999657864511313531-379999998876322100236656734899998268505----------6102047-86
Q gi|254780934|r  173 DMMIVLDVSRSMESFFDSSI-TKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIE----------EFFLLEW-GV  240 (374)
Q Consensus       173 di~~VlD~SgSM~~~~~~~~-~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~t~-~~  240 (374)
T Consensus         1 avvf~ID~s~sM~~~~~~~~~s~~~~al~~i~~~~~~kIis---~~kD~vGvv~~~T~~~~n~~~~~ni~vl~~l~~p~a   77 (222)
T pfam03731         1 STVFLIDASPAMFESVKGLEASPFEQALKCIDEILSRKIIS---NDKDLIGVVLYGTDESENSEGFENVTVLRDLDLPGA   77 (222)
T ss_pred             CEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHEEC---CCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCH
T ss_conf             97999979988868788998783999999999999877137---899858899970567777678860698505788788


Q ss_pred             HHHHHHHHHCCC---------CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHH--
Q ss_conf             899999860133---------687744420367677643222333310257886564279998068778888806899--
Q gi|254780934|r  241 SHLQRKIKYLSK---------FGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSL--  309 (374)
Q Consensus       241 ~~~~~~i~~l~~---------~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~--  309 (374)
T Consensus        78 ~~ik~L~~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~~-------~~~k~~~krI~LfTdnD~P~~~~~~~~~~~  150 (222)
T pfam03731        78 ELLKELDQFLEPLADVFGFNGDSSDGDLLSALWVCMDLLQKQT-------GKKKLSKKRILLFTNLDDPFEDDDQLDTIR  150 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH-------CCCCCCCCEEEEECCCCCCCCCCCHHHHHH
T ss_conf             9999999985103444411689776648889999999988510-------343457867999899998988751778999


Q ss_pred             --HHHHHHHHCCCEEEEEEECCCC---CHHHHHHHC---C--CCCEEEECCHHHHHHHHHHHHHHHHEEE
Q ss_conf             --9999999789879999924822---278899823---8--9817983898999999999998420016
Q gi|254780934|r  310 --YYCNEAKKRGAIVYAIGIRVIR---SHEFLRACA---S--PNSFYLVENPHSMYDAFSHIGKDIVTKR  369 (374)
Q Consensus       310 --~~~~~~k~~gi~IytIg~~~~~---~~~~L~~~A---s--~~~~~~a~~~~~L~~~f~~I~~~i~~~~  369 (374)
T Consensus       151 ~~~~a~Dl~d~gi~i~lf~i~~~~~f~~~~FY~dii~~~~~~~~~~~~~~~~~~l~~l~~~i~~k~~~kR  220 (222)
T pfam03731       151 QKLLAEDLRDEGIEFNLIHLPNSGGFDPNIFYKEIIKLGEDEENEVMLDLEGEKLEDLLSRLRAKQTAKR  220 (222)
T ss_pred             HHHHHCCHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             9998523787497799961498888877788886426776434566777303169999999974303565