HHsearch alignment for GI: 254780934 and conserved domain: pfam03731
>pfam03731 Ku_N Ku70/Ku80 N-terminal alpha/beta domain. The Ku heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the amino terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold.
Probab=94.40 E-value=0.33 Score=25.78 Aligned_cols=187 Identities=16% Similarity=0.181 Sum_probs=93.1
Q ss_pred EEEEEECCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCE----------EEEECCC-CH
Q ss_conf 49999657864511313531-379999998876322100236656734899998268505----------6102047-86
Q gi|254780934|r 173 DMMIVLDVSRSMESFFDSSI-TKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIE----------EFFLLEW-GV 240 (374)
Q Consensus 173 di~~VlD~SgSM~~~~~~~~-~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~t~-~~ 240 (374)
T Consensus 1 avvf~ID~s~sM~~~~~~~~~s~~~~al~~i~~~~~~kIis---~~kD~vGvv~~~T~~~~n~~~~~ni~vl~~l~~p~a 77 (222)
T pfam03731 1 STVFLIDASPAMFESVKGLEASPFEQALKCIDEILSRKIIS---NDKDLIGVVLYGTDESENSEGFENVTVLRDLDLPGA 77 (222)
T ss_pred CEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHEEC---CCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCH
T ss_conf 97999979988868788998783999999999999877137---899858899970567777678860698505788788
Q ss_pred HHHHHHHHHCCC---------CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHH--
Q ss_conf 899999860133---------687744420367677643222333310257886564279998068778888806899--
Q gi|254780934|r 241 SHLQRKIKYLSK---------FGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSL-- 309 (374)
Q Consensus 241 ~~~~~~i~~l~~---------~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~-- 309 (374)
T Consensus 78 ~~ik~L~~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~~-------~~~k~~~krI~LfTdnD~P~~~~~~~~~~~ 150 (222)
T pfam03731 78 ELLKELDQFLEPLADVFGFNGDSSDGDLLSALWVCMDLLQKQT-------GKKKLSKKRILLFTNLDDPFEDDDQLDTIR 150 (222)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH-------CCCCCCCCEEEEECCCCCCCCCCCHHHHHH
T ss_conf 9999999985103444411689776648889999999988510-------343457867999899998988751778999
Q ss_pred --HHHHHHHHCCCEEEEEEECCCC---CHHHHHHHC---C--CCCEEEECCHHHHHHHHHHHHHHHHEEE
Q ss_conf --9999999789879999924822---278899823---8--9817983898999999999998420016
Q gi|254780934|r 310 --YYCNEAKKRGAIVYAIGIRVIR---SHEFLRACA---S--PNSFYLVENPHSMYDAFSHIGKDIVTKR 369 (374)
Q Consensus 310 --~~~~~~k~~gi~IytIg~~~~~---~~~~L~~~A---s--~~~~~~a~~~~~L~~~f~~I~~~i~~~~ 369 (374)
T Consensus 151 ~~~~a~Dl~d~gi~i~lf~i~~~~~f~~~~FY~dii~~~~~~~~~~~~~~~~~~l~~l~~~i~~k~~~kR 220 (222)
T pfam03731 151 QKLLAEDLRDEGIEFNLIHLPNSGGFDPNIFYKEIIKLGEDEENEVMLDLEGEKLEDLLSRLRAKQTAKR 220 (222)
T ss_pred HHHHHCCHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 9998523787497799961498888877788886426776434566777303169999999974303565