HHsearch alignment for GI: 254780934 and conserved domain: pfam11265
>pfam11265 Med25_VWA Mediator complex subunit 25 von Willebrand factor type A. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex.
Probab=93.75 E-value=0.45 Score=25.01 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=91.0
Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHCCCC--CCCCCEEEEEEEECCCCE------EEEECCCCHH
Q ss_conf 724999965786451131353137999999887632-2100236--656734899998268505------6102047868
Q gi|254780934|r 171 RLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAML-EEVKLIP--DVNNVVQSGLVTFSNKIE------EFFLLEWGVS 241 (374)
Q Consensus 171 ~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~t~~~~ 241 (374)
T Consensus 5 ~~dvVfviEgTA~~g~y~~~l--kt~Yi~p~ieyF~~g~~~~~~~~~~~~~~~y~LVvf~t~~~~p~~~~q~~gpt~~~~ 82 (219)
T pfam11265 5 VKDVVFVIEGTANLGPYFETL--KTDYILPIIEYFNGGPLAETDFGGEYGGTQYSLVVFNTHASYPECLVQRSGPTRDVD 82 (219)
T ss_pred CEEEEEEEECCCCCCCHHHHH--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCHH
T ss_conf 004899995543452128999--887689999986189965332356678845899996046877623666068858999
Q ss_pred HHHHHHHHCCCCCCCCC----CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCC-------CHHHHH
Q ss_conf 99999860133687744----4203676776432223333102578865642799980687788888-------068999
Q gi|254780934|r 242 HLQRKIKYLSKFGVSTN----STPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKE-------DQQSLY 310 (374)
Q Consensus 242 ~~~~~i~~l~~~g~~T~----~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~-------~~~~~~ 310 (374)
T Consensus 83 ~fl~~Ld~i~f~GGG~es~A~iaEGLa~ALq~Fdd~~~~r~--~~~~~~~qkhCILIcnSpPy~lP~~e~~~y~g~t~dq 160 (219)
T pfam11265 83 EFLQWLSSIPFMGGGFESCALIAEGLAEALQMFDDFSKMRQ--QQGQTDVHRHCILICNSPPYPLPTVESWQYEGKTSDQ 160 (219)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCEEEEEEECCCCCCCCCCHHHHHCCCCHHH
T ss_conf 99999973501678714668899899999987313665164--6898875304899968999768651204343876899
Q ss_pred HHHHHH--HCCCEEEEEE
Q ss_conf 999999--7898799999
Q gi|254780934|r 311 YCNEAK--KRGAIVYAIG 326 (374)
Q Consensus 311 ~~~~~k--~~gi~IytIg 326 (374)
T Consensus 161 la~~~~f~e~~i~lSIis 178 (219)
T pfam11265 161 LAAAINFAERSISLSIIC 178 (219)
T ss_pred HHHHHCCCCCCEEEEEEC
T ss_conf 998741200462589976