>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).

Probab=98.35 E-value=0.00017 Score=45.30 Aligned_cols=185 Identities=17% Similarity=0.197 Sum_probs=107.9 Q ss_pred ECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCE------------- Q ss_conf 1037787249999657864511313531379999998876322100236656734899998268505------------- Q gi|254780934|r 165 NSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIE------------- 231 (374) Q Consensus 165 ~~~~~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 231 (374) T Consensus 93 ~~aedYPVDLYYLMDLS~SM~dD-------l~~l~~LG~~La~~m~~i---T~nfrlGFGsFVDK~v~Py~~t~p~~l~~ 162 (423) T smart00187 93 RQAEDYPVDLYYLMDLSYSMKDD-------LDNLKSLGDDLAREMKGL---TSNFRLGFGSFVDKTVSPFVSTRPEKLEN 162 (423) T ss_pred ECCCCCCCEEEEEEECCHHHHHH-------HHHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCCCHHHHCC T ss_conf 03246971268885054457888-------999999999999999864---00545511112036657754489788549 Q ss_pred ----------------EEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE Q ss_conf ----------------6102047868999998601336877444203676776432223333102578865642799980 Q gi|254780934|r 232 ----------------EFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMT 295 (374) Q Consensus 232 ----------------~~~~~t~~~~~~~~~i~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillT 295 (374) T Consensus 163 PC~~~~~~C~ppfgf~n~l~LT~d~~~F~~~V~~q~iSg-NlD~PEGGfDAlmQ~---avC~~~IGW-R~~arrllVf~T 237 (423) T smart00187 163 PCPNYNLTCEPPYGFKHVLSLTDDTDEFNEEVKKQRISG-NLDAPEGGFDAIMQA---AVCTEQIGW-REDARRLLVFST 237 (423) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC-CCCCCCCCHHHHHHH---HHHCCCCCC-CCCCEEEEEEEC T ss_conf 987889876798130111236788899999986253634-668876127788888---752000376-557438999983 Q ss_pred CCCCC--------------CCC---------------CCHHHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHCCCCCE Q ss_conf 68778--------------888---------------806899999999978987-999992482227889982389817 Q gi|254780934|r 296 DGENL--------------STK---------------EDQQSLYYCNEAKKRGAI-VYAIGIRVIRSHEFLRACASPNSF 345 (374) Q Consensus 296 DG~~~--------------~~~---------------~~~~~~~~~~~~k~~gi~-IytIg~~~~~~~~~L~~~As~~~~ 345 (374) T Consensus 238 Da~fH~AgDGkL~GIv~PNDg~CHLd~~g~Yt~s~~~DYPSi~ql~~kl~ennI~~IFAVT~~~~~~Y~~Ls~~i-pgs~ 316 (423) T smart00187 238 DAGFHFAGDGKLAGIVQPNDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAENNINPIFAVTKKQVSLYKELSALI-PGSS 316 (423) T ss_pred CCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHC-CCCE T ss_conf 786302367624435437887303278885244565678878999999985393279985220456999998757-7540 Q ss_pred E--EECCHH---H-HHHHHHHHHHHH Q ss_conf 9--838989---9-999999999842 Q gi|254780934|r 346 Y--LVENPH---S-MYDAFSHIGKDI 365 (374) Q Consensus 346 ~--~a~~~~---~-L~~~f~~I~~~i 365 (374) T Consensus 317 vg~L~~DSsNVv~LI~~aY~ki~S~V 342 (423) T smart00187 317 VGVLSEDSSNVVELIKDAYNKISSRV 342 (423) T ss_pred EEEECCCCHHHHHHHHHHHHHHCEEE T ss_conf 35524575138999999998750189

HHsearch alignment for GI: 254780934 and conserved domain: smart00187