HHsearch alignment for GI: 254780934 and conserved domain: smart00327
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=99.84 E-value=2.8e-19 Score=133.38 Aligned_cols=160 Identities=27% Similarity=0.388 Sum_probs=127.8
Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEC--CCCHHHHHHHHH
Q ss_conf 724999965786451131353137999999887632210023665673489999826850561020--478689999986
Q gi|254780934|r 171 RLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLL--EWGVSHLQRKIK 248 (374)
Q Consensus 171 ~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~i~ 248 (374)
T Consensus 1 ~~di~~vvD~S~SM~~------~~~~~~k~~~~~~i~~l~~~~---~~~~v~vv~f~~~~~~~~~~~~~~~~~~~~~~i~ 71 (177)
T smart00327 1 PLDVVFLLDGSGSMGP------NRFEKAKEFVLKLVEQLDIGP---DGDRVGLVTFSDDATVLFPLNDSRSKDALLEALA 71 (177)
T ss_pred CCEEEEEEECCCCCCC------HHHHHHHHHHHHHHHHHHCCC---CCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 9489999928899882------899999999999999864179---9878999996372689976888689999999997
Q ss_pred HCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 0133-687744420367677643222333310257886564279998068778888806899999999978987999992
Q gi|254780934|r 249 YLSK-FGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGI 327 (374)
Q Consensus 249 ~l~~-~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~ 327 (374)
T Consensus 72 ~l~~~~~g~t~~~~al~~a~~~~~~~~~~~------~~~~~~~iil~TDG~~~~~---~~~~~~~~~~~~~~v~i~~ig~ 142 (177)
T smart00327 72 SLSYKLGGGTNLGAALQYALENLFSKSAGS------RRGAPKVLILITDGESNDG---GDLLKAAKELKRSGVKVFVVGV 142 (177)
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHCCC------CCCCCEEEEEEECCCCCCC---HHHHHHHHHHHHCCCEEEEEEE
T ss_conf 141557887764289999999997665037------7887428999805887872---5299999999867948999995
Q ss_pred CCCCCHHHHHHHCC--CCCEEEE
Q ss_conf 48222788998238--9817983
Q gi|254780934|r 328 RVIRSHEFLRACAS--PNSFYLV 348 (374)
Q Consensus 328 ~~~~~~~~L~~~As--~~~~~~a 348 (374)
T Consensus 143 g~~~~~~~l~~ia~~~~~~~~~~ 165 (177)
T smart00327 143 GNDVDEEELKKLASAPGGVYVFL 165 (177)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEE
T ss_conf 88479999999984899659995