HHsearch results for GI: 254780934 and protein with PDBid: 1pcx_A
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=95.98 E-value=0.064 Score=28.74 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=100.5
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEE---------------
Q ss_conf 78724999965786451131353137999999887632210023665673489999826850561---------------
Q gi|254780934|r 169 DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEF--------------- 233 (374)
Q Consensus 169 ~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 233 (374)
..+.-.+||+|.|.+-... .-++.+++++...++.+. ......+++++.|+..+...
T Consensus 185 p~pp~~vFvIDvS~~av~~-----g~l~~~~~~i~~~L~~lp---~~~~~~~Vg~Itfd~~v~~~~l~~~~~~~~~~~~~ 256 (810)
T 1pcx_A 185 PPPATYCFLIDVSQSSIKS-----GLLATTINTLLQNLDSIP---NHDERTRISILCVDNAIHYFKIPLDSENNEESADQ 256 (810)
T ss_dssp CCCCEEEEEEECSHHHHHH-----THHHHHHHHHHHHTTTSC---CTTSCCEEEEEEESSSEEEEECCCGGGC-------
T ss_pred CCCCEEEEEEECCHHHHHH-----HHHHHHHHHHHHHHHHCC---CCCCCEEEEEEEECCCEEEEECCCCCCCCCCCCCC
T ss_conf 9985899999897788664-----799999999999875143---67876059999958828999656777764333344
Q ss_pred ---------------------EECCCCHHHHHHHHHHCCCCC-----CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf ---------------------020478689999986013368-----774442036767764322233331025788656
Q gi|254780934|r 234 ---------------------FLLEWGVSHLQRKIKYLSKFG-----VSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANY 287 (374)
Q Consensus 234 ---------------------~~~t~~~~~~~~~i~~l~~~g-----~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 287 (374)
.++...+..+...++.|+... .++..+.++..|...+...
T Consensus 257 ~~~~~~~dl~~~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~alG~Al~~a~~ll~~~-------------- 322 (810)
T 1pcx_A 257 INMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV-------------- 322 (810)
T ss_dssp CEEECCCCTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTT--------------
T ss_pred CCCCCCCCHHHCCCCCCCCCEEEHHHHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHCC--------------
T ss_conf 432444442331467876651206897999999998554531698887322999999999987457--------------
Q ss_pred CEEEEEEECCCCCCCCC------------------------CHHHHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHC--
Q ss_conf 42799980687788888------------------------06899999999978987999992482-2278899823--
Q gi|254780934|r 288 KKIIVFMTDGENLSTKE------------------------DQQSLYYCNEAKKRGAIVYAIGIRVI-RSHEFLRACA-- 340 (374)
Q Consensus 288 ~k~iillTDG~~~~~~~------------------------~~~~~~~~~~~k~~gi~IytIg~~~~-~~~~~L~~~A-- 340 (374)
--.|++++.|.++.|.. ..-.+.++..+.+.||.|....+..+ .+-..|..++
T Consensus 323 gGkI~~f~s~~pt~GpG~l~~r~~~~~~~~~~~~~~l~~~~~~fY~~la~~~~~~~isvDlF~~s~~~~dlatl~~l~~~ 402 (810)
T 1pcx_A 323 GGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRF 402 (810)
T ss_dssp CEEEEEEESSCCCSSTTCCCC--------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 98699995779867886321045544457734556532537899999999999879359998604777772888888874
Q ss_pred CCCCEEEE-----CCHHHHHHHHHHHHHHHHE
Q ss_conf 89817983-----8989999999999984200
Q gi|254780934|r 341 SPNSFYLV-----ENPHSMYDAFSHIGKDIVT 367 (374)
Q Consensus 341 s~~~~~~a-----~~~~~L~~~f~~I~~~i~~ 367 (374)
|+|..|+- ....+....+.++.+.++.
T Consensus 403 TGG~v~~y~~F~~~~~~d~~~l~~dl~~~l~~ 434 (810)
T 1pcx_A 403 TAGQTHFYPGFSGKNPNDIVKFSTEFAKHISM 434 (810)
T ss_dssp TTCCEEEEETCCTTSHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 58469980686644345789999999986566