HHsearch results for GI: 254780934 and protein with PDBid: 1yvr_A
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=98.59 E-value=4e-06 Score=53.76 Aligned_cols=134 Identities=16% Similarity=0.109 Sum_probs=75.1
Q ss_pred CCEEEEEEECCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECC-CCHHHHHHHH
Q ss_conf 8724999965786451131353-1379999998876322100236656734899998268505610204-7868999998
Q gi|254780934|r 170 ARLDMMIVLDVSRSMESFFDSS-ITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLE-WGVSHLQRKI 247 (374)
Q Consensus 170 ~~~di~~VlD~SgSM~~~~~~~-~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-~~~~~~~~~i 247 (374)
.+..+++++|.||||.....++ ....+.+.-....+.. .. .. ..++.|++...+..... .........+
T Consensus 367 ~~~r~liavDvSGSM~~~~~g~~~~~~~~aa~la~~~~~-~~------~~--~~vv~Fs~~~~~l~~~~~~~l~~~~~~~ 437 (538)
T 1yvr_A 367 TGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVAR-TE------KD--SHMVAFSDEMLPCPITVNMLLHEVVEKM 437 (538)
T ss_dssp CCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHH-HC------SS--EEEEEESSSEECCSCCTTSCHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HC------CC--CEEEEECCCEEECCCCHHHHHHHHHHHH
T ss_conf 786389999764554374448975799999999999998-57------99--8799976935872777101499999998
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHH-HHHHHHHHHHCCCEEEEEE
Q ss_conf 601336877444203676776432223333102578865642799980687788888068-9999999997898799999
Q gi|254780934|r 248 KYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQ-SLYYCNEAKKRGAIVYAIG 326 (374)
Q Consensus 248 ~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~-~~~~~~~~k~~gi~IytIg 326 (374)
..+ .+++|+.+.++.|+.+.- ....++|++|||+.|.+..... ......+-.+.+.+++.|+
T Consensus 438 ~~~--~~ggT~~~~~i~~a~~~~---------------~~~D~~IvlTD~e~~~g~~~p~~al~~Yr~k~~~~ak~v~v~ 500 (538)
T 1yvr_A 438 SDI--TMGSTDCALPMLWAQKTN---------------TAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCA 500 (538)
T ss_dssp TTC--CCSCCCTTHHHHHHHHTT---------------CCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEE
T ss_pred HCC--CCCCCCHHHHHHHHHHCC---------------CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 436--789861899999999615---------------568989998179977898899999999999848997599998
Q ss_pred ECC
Q ss_conf 248
Q gi|254780934|r 327 IRV 329 (374)
Q Consensus 327 ~~~ 329 (374)
+..
T Consensus 501 l~~ 503 (538)
T 1yvr_A 501 MTS 503 (538)
T ss_dssp CSS
T ss_pred CCC
T ss_conf 568