HHsearch results for GI: 254780934 and protein with PDBid: 2vdr_B
>2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing, platelet integrin ALPHAIIBBETA3, polymorphism, glycoprotein, cell adhesion, calcium; HET: NAG MAN; 2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=99.36 E-value=8.7e-10 Score=75.57 Aligned_cols=189 Identities=14% Similarity=0.138 Sum_probs=125.8
Q ss_pred EECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCE------------
Q ss_conf 31037787249999657864511313531379999998876322100236656734899998268505------------
Q gi|254780934|r 164 VNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIE------------ 231 (374)
Q Consensus 164 ~~~~~~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 231 (374)
.....+.|+|++|++|.||||... |+.+|..+..+.+.+.... ..+|+++..|.++..
T Consensus 104 v~~~~~yPvDL~fLmD~TgSM~dd-------I~~lk~~~~~l~~~l~~~t---~~~rlGfgsf~Dk~~~p~~~~~~~~~l 173 (461)
T 2vdr_B 104 VRQVEDYPVDIYYLMDLSYSMKDD-------LWSIQNLGTKLATQMRKLT---SNLRIGFGAFVDKPVSPYMYISPPEAL 173 (461)
T ss_dssp EECCSCCCEEEEEEEECSGGGGGG-------HHHHHHHHHHHHHHHHHHC---TTEEEEEEEECCCSSTTTSCCCSTHHH
T ss_pred EECCCCCCCCEEEEEECCCCHHHH-------HHHHHHHHHHHHHHHHHHC---CCCEEEEEEEEEECCCCCCCCCCHHHH
T ss_conf 751677874479999477466999-------9999999999999998528---884799999897347764444666550
Q ss_pred ------------------EEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH-HHHHHHHCCCCCCCCCCEEEE
Q ss_conf ------------------6102047868999998601336877444203676776432-223333102578865642799
Q gi|254780934|r 232 ------------------EFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIF-DMQGMRQHCNTEDANYKKIIV 292 (374)
Q Consensus 232 ------------------~~~~~t~~~~~~~~~i~~l~~~g~~T~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~k~ii 292 (374)
...++|.+...+...++.+.+.| |-+..++...|..+.. -.....| ..+.+|++|
T Consensus 174 ~~Pc~~~~~~c~~~f~~~~~l~lT~d~~~F~~~V~~~~~sG-ggD~PE~~~dAL~qa~vc~~~igW-----R~~a~rilv 247 (461)
T 2vdr_B 174 ENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSR-NRDAPEGGFDAIMQATVCDEKIGW-----RNDASHLLV 247 (461)
T ss_dssp HCTTGGGTSCCCCCCSEEEEEEEESCHHHHHHHHHTCCCCC-CSBSSBCHHHHHHHHHHCHHHHTC-----CTTSEEEEE
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCEECCC-CCCCCCCHHHHHHHHHHHHHHCCC-----CCCCEEEEE
T ss_conf 48664678776787330452468878999999875036547-986776689999999986310787-----868759999
Q ss_pred EEECCCCCCC-----------------------------CCCHHHHHHHHHHHHCCC-EEEEEEECCCCCHHHHHHHCC-
Q ss_conf 9806877888-----------------------------880689999999997898-799999248222788998238-
Q gi|254780934|r 293 FMTDGENLST-----------------------------KEDQQSLYYCNEAKKRGA-IVYAIGIRVIRSHEFLRACAS- 341 (374)
Q Consensus 293 llTDG~~~~~-----------------------------~~~~~~~~~~~~~k~~gi-~IytIg~~~~~~~~~L~~~As- 341 (374)
|+||...+.. .++....++...+++++| .||+|.-. ..++.+..+.
T Consensus 248 liTDA~~H~agDgkl~giv~pnDg~Chl~~~~~y~~s~~~DYPSv~ql~~~l~e~~i~pIFAVt~~---~~~~Y~~L~~~ 324 (461)
T 2vdr_B 248 FTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTEN---VVNLYQNYSEL 324 (461)
T ss_dssp EEESSCBCCTTGGGGGTCCSCCCCCCCCCTTSBCTTTTTSCCCCHHHHHHHHHHTTCEEEEEEEGG---GHHHHHHHHTT
T ss_pred EECCCCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCC---CHHHHHHHHHH
T ss_conf 989788433687544104438876315379887665555778999999999986496799996553---22268999974
Q ss_pred -CCCE--EEECCHHHHHHHHHHHHHHHHEEEEE
Q ss_conf -9817--98389899999999999842001666
Q gi|254780934|r 342 -PNSF--YLVENPHSMYDAFSHIGKDIVTKRIW 371 (374)
Q Consensus 342 -~~~~--~~a~~~~~L~~~f~~I~~~i~~~~~~ 371 (374)
++.. -..++...+.+..++--++|.+.-.+
T Consensus 325 i~~s~vg~L~~dSsNiv~LI~~aY~~i~s~v~l 357 (461)
T 2vdr_B 325 IPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVEL 357 (461)
T ss_dssp STTCEEEEESSCCHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHCEEEE
T ss_conf 687536774477376999999999876307999