HHsearch results for GI: 254780934 and protein with PDBid: 3efo_B
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=96.95 E-value=0.016 Score=32.39 Aligned_cols=165 Identities=10% Similarity=0.107 Sum_probs=94.9
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCCEEEEEEEECCCCEE---------------
Q ss_conf 78724999965786451131353137999999887632210023-66567348999982685056---------------
Q gi|254780934|r 169 DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLI-PDVNNVVQSGLVTFSNKIEE--------------- 232 (374)
Q Consensus 169 ~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------------- 232 (374)
..+--++||+|.|.+--.. + -.+.+++++...++.+... .......+++++.|+..+..
T Consensus 175 ~~pp~~vfvIDvS~~av~~---g--~~~~~~~~l~~~l~~lp~~~~~~~~~~~VglItf~~~v~~~~~~~~~~~~~~~v~ 249 (770)
T 3efo_B 175 PNPPAFIFMIDVSYSNIKN---G--LVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVV 249 (770)
T ss_dssp CCCCEEEEEEECSHHHHHT---T--HHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEE
T ss_pred CCCCEEEEEEECCHHHHHH---H--HHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEEECCEEEEECCCCCCCCCEEEEC
T ss_conf 9997899999897577664---5--9999999999999856222303677537999981671899557888675403411
Q ss_pred --------------EEECCCCHHHHHHHHHHCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf --------------10204786899999860133-----68774442036767764322233331025788656427999
Q gi|254780934|r 233 --------------FFLLEWGVSHLQRKIKYLSK-----FGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVF 293 (374)
Q Consensus 233 --------------~~~~t~~~~~~~~~i~~l~~-----~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iil 293 (374)
..++...+..+.+.++.|.. ....+..+.++..+...+..... .- .|++
T Consensus 250 ~d~~~~~~p~~~~~l~~l~e~~~~i~~~L~~l~~~~~~~~~~~~~~g~Al~~a~~~l~~~~~-----------gG-kii~ 317 (770)
T 3efo_B 250 TDVGEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADC-----------PG-KLFI 317 (770)
T ss_dssp CCTTSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTC-----------CE-EEEE
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCC-----------CC-EEEE
T ss_conf 58543465564452120899899999998623122057888874389999999999715699-----------96-3999
Q ss_pred EECCCCCC-CC-----------------------CCHHHHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHC--CCCCEE
Q ss_conf 80687788-88-----------------------806899999999978987999992482-2278899823--898179
Q gi|254780934|r 294 MTDGENLS-TK-----------------------EDQQSLYYCNEAKKRGAIVYAIGIRVI-RSHEFLRACA--SPNSFY 346 (374)
Q Consensus 294 lTDG~~~~-~~-----------------------~~~~~~~~~~~~k~~gi~IytIg~~~~-~~~~~L~~~A--s~~~~~ 346 (374)
+++|.++. +. ...-...++..+.+.||.|....+..+ .+-..|..++ |+|..|
T Consensus 318 f~s~~P~~~gpg~l~~r~~~~~~~~~~e~~~~~~~~~fY~~La~~~~~~~isvDlf~~s~~~~~l~~l~~l~~~TGG~v~ 397 (770)
T 3efo_B 318 FHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLY 397 (770)
T ss_dssp EECSCCCSSSTTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEE
T ss_conf 96579988887444465432235772234303621799999999999859469999944876787999999986496699
Q ss_pred EECC
Q ss_conf 8389
Q gi|254780934|r 347 LVEN 350 (374)
Q Consensus 347 ~a~~ 350 (374)
..++
T Consensus 398 ~~~~ 401 (770)
T 3efo_B 398 KYNN 401 (770)
T ss_dssp ECTT
T ss_pred EECC
T ss_conf 9689