HHsearch results for GI: 254780934 and protein with PDBid: 3efo_B

>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=96.95  E-value=0.016  Score=32.39  Aligned_cols=165  Identities=10%  Similarity=0.107  Sum_probs=94.9

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCCEEEEEEEECCCCEE---------------
Q ss_conf             78724999965786451131353137999999887632210023-66567348999982685056---------------
Q gi|254780934|r  169 DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLI-PDVNNVVQSGLVTFSNKIEE---------------  232 (374)
Q Consensus       169 ~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------  232 (374)
                      ..+--++||+|.|.+--..   +  -.+.+++++...++.+... .......+++++.|+..+..               
T Consensus       175 ~~pp~~vfvIDvS~~av~~---g--~~~~~~~~l~~~l~~lp~~~~~~~~~~~VglItf~~~v~~~~~~~~~~~~~~~v~  249 (770)
T 3efo_B          175 PNPPAFIFMIDVSYSNIKN---G--LVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVV  249 (770)
T ss_dssp             CCCCEEEEEEECSHHHHHT---T--HHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEE
T ss_pred             CCCCEEEEEEECCHHHHHH---H--HHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEEECCEEEEECCCCCCCCCEEEEC
T ss_conf             9997899999897577664---5--9999999999999856222303677537999981671899557888675403411


Q ss_pred             --------------EEECCCCHHHHHHHHHHCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf             --------------10204786899999860133-----68774442036767764322233331025788656427999
Q gi|254780934|r  233 --------------FFLLEWGVSHLQRKIKYLSK-----FGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVF  293 (374)
Q Consensus       233 --------------~~~~t~~~~~~~~~i~~l~~-----~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iil  293 (374)
                                    ..++...+..+.+.++.|..     ....+..+.++..+...+.....           .- .|++
T Consensus       250 ~d~~~~~~p~~~~~l~~l~e~~~~i~~~L~~l~~~~~~~~~~~~~~g~Al~~a~~~l~~~~~-----------gG-kii~  317 (770)
T 3efo_B          250 TDVGEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADC-----------PG-KLFI  317 (770)
T ss_dssp             CCTTSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTC-----------CE-EEEE
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCC-----------CC-EEEE
T ss_conf             58543465564452120899899999998623122057888874389999999999715699-----------96-3999


Q ss_pred             EECCCCCC-CC-----------------------CCHHHHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHC--CCCCEE
Q ss_conf             80687788-88-----------------------806899999999978987999992482-2278899823--898179
Q gi|254780934|r  294 MTDGENLS-TK-----------------------EDQQSLYYCNEAKKRGAIVYAIGIRVI-RSHEFLRACA--SPNSFY  346 (374)
Q Consensus       294 lTDG~~~~-~~-----------------------~~~~~~~~~~~~k~~gi~IytIg~~~~-~~~~~L~~~A--s~~~~~  346 (374)
                      +++|.++. +.                       ...-...++..+.+.||.|....+..+ .+-..|..++  |+|..|
T Consensus       318 f~s~~P~~~gpg~l~~r~~~~~~~~~~e~~~~~~~~~fY~~La~~~~~~~isvDlf~~s~~~~~l~~l~~l~~~TGG~v~  397 (770)
T 3efo_B          318 FHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLY  397 (770)
T ss_dssp             EECSCCCSSSTTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEE
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEE
T ss_conf             96579988887444465432235772234303621799999999999859469999944876787999999986496699


Q ss_pred             EECC
Q ss_conf             8389
Q gi|254780934|r  347 LVEN  350 (374)
Q Consensus       347 ~a~~  350 (374)
                      ..++
T Consensus       398 ~~~~  401 (770)
T 3efo_B          398 KYNN  401 (770)
T ss_dssp             ECTT
T ss_pred             EECC
T ss_conf             9689