Query gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 374 No_of_seqs 175 out of 2058 Neff 9.7 Searched_HMMs 23785 Date Wed Jun 1 00:04:23 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780934.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2odp_A Complement C2; C3/C5 co 99.9 7.2E-24 3E-28 159.4 19.4 189 167-364 5-212 (509) 2 1rrk_A Complement factor B; BB 99.9 5.4E-23 2.3E-27 154.2 17.1 184 171-366 1-206 (497) 3 1q0p_A Complement factor B; VO 99.9 8.5E-23 3.6E-27 153.0 16.7 189 168-368 12-222 (223) 4 1shu_X Anthrax toxin receptor 99.9 2.8E-21 1.2E-25 144.1 20.2 175 169-366 4-182 (182) 5 3ibs_A Conserved hypothetical 99.9 4.8E-21 2E-25 142.6 18.7 176 168-366 8-213 (218) 6 1v7p_C Integrin alpha-2; snake 99.9 4.5E-21 1.9E-25 142.8 17.2 181 168-368 3-198 (200) 7 1pt6_A Integrin alpha-1; X-RAY 99.9 7E-21 3E-25 141.6 17.4 180 169-368 5-199 (213) 8 2b2x_A Integrin alpha-1; compu 99.9 5.7E-21 2.4E-25 142.2 16.4 182 169-370 20-216 (223) 9 3gxb_A VON willebrand factor; 99.9 2E-20 8.3E-25 139.0 18.1 172 171-367 2-176 (184) 10 3hrz_D Complement factor B; se 99.9 2.6E-20 1.1E-24 138.2 18.3 190 168-369 240-451 (741) 11 1atz_A VON willebrand factor; 99.9 1.7E-20 7E-25 139.4 16.5 178 170-367 4-189 (189) 12 1n3y_A Integrin alpha-X; alpha 99.9 4.5E-21 1.9E-25 142.8 13.4 183 167-368 5-196 (198) 13 1mf7_A Integrin alpha M; cell 99.9 1.3E-20 5.3E-25 140.1 14.3 180 169-367 3-191 (194) 14 1ijb_A VON willebrand factor; 99.8 1.3E-18 5.4E-23 128.1 19.3 182 169-368 11-198 (202) 15 2x5n_A SPRPN10, 26S proteasome 99.8 2.4E-17 1E-21 120.6 17.0 153 172-340 3-156 (192) 16 2xgg_A Microneme protein 2; A/ 99.7 6.9E-17 2.9E-21 117.8 15.5 156 167-340 13-172 (178) 17 1mjn_A Integrin alpha-L; rossm 99.7 6.1E-17 2.5E-21 118.2 11.7 170 170-365 1-179 (179) 18 2x31_A Magnesium-chelatase 60 99.6 9.6E-18 4E-22 123.0 -0.1 169 170-360 4-185 (189) 19 2iue_A Pactolus I-domain; memb 99.6 2.2E-13 9.1E-18 97.0 19.9 168 170-356 2-203 (212) 20 3k6s_A Integrin alpha-X; cell 99.6 2.1E-15 8.7E-20 109.1 7.1 183 169-370 128-319 (1095) 21 2vdr_B Integrin beta-3; cell a 99.4 8.7E-10 3.7E-14 75.6 21.6 189 164-371 104-357 (461) 22 3fcs_B Integrin beta-3; beta p 99.2 2.7E-09 1.1E-13 72.6 17.6 186 164-365 104-355 (690) 23 1jey_B KU80; double-strand DNA 99.0 2.9E-08 1.2E-12 66.5 16.2 147 171-329 7-168 (565) 24 2nvo_A RO sixty-related protei 98.9 3.5E-08 1.5E-12 66.0 13.8 136 170-329 361-499 (535) 25 3k6s_B Integrin beta-2; cell r 98.7 3E-07 1.3E-11 60.5 10.8 186 164-365 97-345 (687) 26 1yvr_A RO autoantigen, 60-kDa 98.6 4E-06 1.7E-10 53.8 15.0 134 170-329 367-503 (538) 27 1jey_A KU70; double-strand DNA 97.5 0.0033 1.4E-07 36.4 13.0 147 172-330 36-208 (609) 28 3eh1_A Protein transport prote 97.0 0.014 5.7E-07 32.7 19.1 175 170-367 159-399 (751) 29 3efo_B SEC24 related gene fami 97.0 0.016 6.6E-07 32.4 19.3 165 169-350 175-401 (770) 30 1m2o_A SEC23, protein transpor 96.5 0.036 1.5E-06 30.3 15.0 170 171-364 121-390 (768) 31 1m2v_B SEC24, protein transpor 96.2 0.05 2.1E-06 29.3 18.4 175 170-366 302-549 (926) 32 2nut_A Protein transport prote 96.0 0.059 2.5E-06 28.9 14.6 173 168-364 129-396 (769) 33 1pcx_A Protein transport prote 96.0 0.064 2.7E-06 28.7 19.4 177 169-367 185-434 (810) 34 3eh2_A Protein transport prote 95.8 0.075 3.1E-06 28.3 19.2 181 169-365 171-415 (766) 35 1zk4_A R-specific alcohol dehy 75.3 3.3 0.00014 18.6 6.6 15 315-329 175-189 (251) 36 1uls_A Putative 3-oxoacyl-acyl 73.3 3.6 0.00015 18.3 7.3 52 308-362 159-220 (245) 37 1nff_A Putative oxidoreductase 64.5 5.6 0.00024 17.2 7.0 21 309-329 165-185 (260) 38 2bgk_A Rhizome secoisolaricire 63.7 5.8 0.00025 17.1 9.1 51 310-363 180-245 (278) 39 3o38_A Short chain dehydrogena 62.6 6.1 0.00026 17.0 6.4 22 308-329 185-206 (266) 40 3n74_A 3-ketoacyl-(acyl-carrie 62.0 6.3 0.00026 16.9 7.4 21 309-329 172-192 (261) 41 3gvc_A Oxidoreductase, probabl 60.5 6.7 0.00028 16.7 7.8 21 309-329 187-207 (277) 42 3nyw_A Putative oxidoreductase 58.7 7.1 0.0003 16.5 6.3 54 309-363 170-223 (250) 43 2ehd_A Oxidoreductase, oxidore 58.4 7.2 0.0003 16.5 7.4 71 289-363 130-212 (234) 44 1xg5_A ARPG836; short chain de 57.5 7.5 0.00032 16.4 8.7 53 310-363 200-262 (279) 45 3imf_A Short chain dehydrogena 54.9 8.3 0.00035 16.2 8.3 52 309-363 168-233 (257) 46 3grp_A 3-oxoacyl-(acyl carrier 53.6 8.7 0.00037 16.0 9.2 53 308-363 184-246 (266) 47 3op4_A 3-oxoacyl-[acyl-carrier 52.4 9.1 0.00038 15.9 8.6 51 309-362 167-227 (248) 48 2a4k_A 3-oxoacyl-[acyl carrier 52.2 9.2 0.00039 15.9 8.9 53 308-363 160-222 (263) 49 1hxh_A 3BETA/17BETA-hydroxyste 52.1 9.2 0.00039 15.9 6.4 20 310-329 164-185 (253) 50 1oi4_A Hypothetical protein YH 51.8 9.3 0.00039 15.9 5.5 21 343-363 169-189 (193) 51 1geg_A Acetoin reductase; SDR 50.8 9.7 0.00041 15.8 8.8 21 309-329 164-184 (256) 52 1k2w_A Sorbitol dehydrogenase; 50.0 10 0.00042 15.7 9.0 21 309-329 164-184 (256) 53 2pnf_A 3-oxoacyl-[acyl-carrier 49.2 10 0.00043 15.6 6.2 52 308-362 168-229 (248) 54 3dii_A Short-chain dehydrogena 48.1 11 0.00045 15.5 6.3 50 309-362 158-213 (247) 55 3cxt_A Dehydrogenase with diff 46.5 11 0.00047 15.4 7.7 21 309-329 195-215 (291) 56 2b4q_A Rhamnolipids biosynthes 45.0 12 0.0005 15.2 7.6 51 309-362 194-256 (276) 57 2ae2_A Protein (tropinone redu 44.6 12 0.00051 15.2 5.9 22 308-329 170-191 (260) 58 2zat_A Dehydrogenase/reductase 44.4 12 0.00051 15.2 7.6 22 308-329 175-196 (260) 59 2o23_A HADH2 protein; HSD17B10 44.0 12 0.00052 15.1 10.4 53 308-363 181-244 (265) 60 1fmc_A 7 alpha-hydroxysteroid 42.7 13 0.00054 15.0 7.2 51 309-362 171-232 (255) 61 3gem_A Short chain dehydrogena 41.5 14 0.00057 14.9 7.4 51 309-363 182-240 (260) 62 1zem_A Xylitol dehydrogenase; 41.3 14 0.00057 14.9 8.3 22 308-329 168-189 (262) 63 3m1a_A Putative dehydrogenase; 41.3 14 0.00057 14.9 10.0 21 309-329 163-183 (281) 64 2c07_A 3-oxoacyl-(acyl-carrier 40.8 14 0.00058 14.8 8.0 53 308-363 204-266 (285) 65 1iy8_A Levodione reductase; ox 40.8 14 0.00058 14.8 8.7 22 308-329 176-197 (267) 66 1sy7_A Catalase 1; heme oxidat 40.6 14 0.00059 14.8 5.9 41 283-328 530-570 (715) 67 1hdc_A 3-alpha, 20 beta-hydrox 40.2 14 0.0006 14.8 8.6 74 289-363 131-225 (254) 68 2cfc_A 2-(R)-hydroxypropyl-COM 40.1 14 0.0006 14.8 8.7 53 308-363 166-230 (250) 69 3ioy_A Short-chain dehydrogena 38.9 15 0.00062 14.6 8.7 12 314-325 182-193 (319) 70 3lyl_A 3-oxoacyl-(acyl-carrier 38.5 15 0.00063 14.6 7.4 51 309-362 166-226 (247) 71 1yb1_A 17-beta-hydroxysteroid 38.2 15 0.00064 14.6 7.6 19 311-329 194-215 (272) 72 2k21_A Potassium voltage-gated 37.9 15 0.00065 14.6 2.7 39 9-47 41-79 (138) 73 2gdz_A NAD+-dependent 15-hydro 37.5 16 0.00066 14.5 8.6 19 311-329 169-187 (267) 74 3ijr_A Oxidoreductase, short c 36.4 16 0.00069 14.4 9.4 22 308-329 207-228 (291) 75 2wsb_A Galactitol dehydrogenas 35.9 17 0.0007 14.4 6.2 21 309-329 171-191 (254) 76 2nwq_A Probable short-chain de 34.5 17 0.00074 14.2 4.6 50 311-364 185-245 (272) 77 2bd0_A Sepiapterin reductase; 33.8 18 0.00076 14.2 7.1 21 309-329 170-190 (244) 78 2w8t_A SPT, serine palmitoyltr 33.8 9.8 0.00041 15.7 0.7 60 305-366 356-416 (427) 79 2jah_A Clavulanic acid dehydro 31.9 19 0.00081 14.0 8.2 52 309-363 167-229 (247) 80 1w6u_A 2,4-dienoyl-COA reducta 30.4 21 0.00086 13.8 7.5 21 309-329 189-209 (302) 81 1h5q_A NADP-dependent mannitol 30.1 21 0.00087 13.8 8.9 22 308-329 183-204 (265) 82 3gaf_A 7-alpha-hydroxysteroid 28.4 22 0.00093 13.6 9.0 53 308-363 171-234 (256) 83 3ftp_A 3-oxoacyl-[acyl-carrier 27.9 23 0.00095 13.6 9.4 51 309-362 189-249 (270) 84 3k31_A Enoyl-(acyl-carrier-pro 27.6 23 0.00097 13.5 5.9 22 308-329 193-214 (296) 85 3h7a_A Short chain dehydrogena 27.0 24 0.00099 13.5 9.7 56 309-364 167-229 (252) 86 3gk0_A PNP synthase, pyridoxin 25.9 25 0.001 13.3 6.2 69 293-364 129-206 (278) 87 2d1y_A Hypothetical protein TT 25.4 25 0.0011 13.3 8.6 22 308-329 160-181 (256) 88 2rhc_B Actinorhodin polyketide 25.3 25 0.0011 13.3 9.8 21 309-329 185-205 (277) 89 1yde_A Retinal dehydrogenase/r 24.6 26 0.0011 13.2 7.1 22 308-329 165-186 (270) 90 1bdb_A CIS-biphenyl-2,3-dihydr 24.3 26 0.0011 13.2 8.8 10 319-328 176-185 (277) 91 1spx_A Short-chain reductase f 24.2 27 0.0011 13.1 7.4 21 309-329 174-194 (278) 92 3i4f_A 3-oxoacyl-[acyl-carrier 24.1 27 0.0011 13.1 6.5 52 309-363 173-234 (264) 93 3lf2_A Short chain oxidoreduct 23.9 27 0.0011 13.1 8.7 22 308-329 170-191 (265) 94 1xhl_A Short-chain dehydrogena 22.7 29 0.0012 13.0 8.0 21 309-329 192-212 (297) 95 2pd6_A Estradiol 17-beta-dehyd 22.0 29 0.0012 12.9 7.4 51 309-362 177-237 (264) 96 3gk3_A Acetoacetyl-COA reducta 21.8 30 0.0012 12.9 8.5 22 308-329 186-207 (269) 97 3ctm_A Carbonyl reductase; alc 21.8 30 0.0012 12.9 6.2 18 311-329 201-218 (279) 98 1ae1_A Tropinone reductase-I; 21.7 30 0.0013 12.8 7.7 21 309-329 183-203 (273) 99 1xkq_A Short-chain reductase f 21.6 30 0.0013 12.8 6.3 22 308-329 173-194 (280) 100 2c71_A Glycoside hydrolase, fa 20.8 31 0.0013 12.7 2.9 37 289-325 149-185 (216) 101 1xq1_A Putative tropinone redu 20.5 32 0.0013 12.7 6.3 22 308-329 175-196 (266) No 1 >2odp_A Complement C2; C3/C5 convertase, complement serine protease, human complement system, glycoprotein, SP, VWFA, hydrolase; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Probab=99.93 E-value=7.2e-24 Score=159.41 Aligned_cols=189 Identities=15% Similarity=0.220 Sum_probs=145.0 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECC----CCHHH Q ss_conf 37787249999657864511313531379999998876322100236656734899998268505610204----78689 Q gi|254780934|r 167 QTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLE----WGVSH 242 (374) Q Consensus 167 ~~~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t----~~~~~ 242 (374) ...+.+||+||||.||||.. .+++.+++++..+++.+... ....|++++.|++.+....+++ .+... T Consensus 5 ~~~g~~DivfvlD~SgSm~~------~~~~~~k~~~~~~i~~~~~~---~~~~rv~lv~fs~~~~~~~~l~~~~~~~~~~ 75 (509) T 2odp_A 5 QRSGHLNLYLLLDASQSVSE------NDFLIFKESASLMVDRIFSF---EINVSVAIITFASEPKVLMSVLNDNSRDMTE 75 (509) T ss_dssp CSSSEEEEEEEEECSTTSCH------HHHHHHHHHHHHHHHHHHTT---CCCEEEEEEEESSSEEEEECTTSGGGGCHHH T ss_pred CCCCCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHCCC---CCCCEEEEEEECCEEEEEEECCCCCCCCHHH T ss_conf 67898659999978699998------99999999999999961448---9974899999888357997178887557999 Q ss_pred HHHHHHHCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH----- Q ss_conf 9999860133----6877444203676776432223333102578865642799980687788888068999999----- Q gi|254780934|r 243 LQRKIKYLSK----FGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCN----- 313 (374) Q Consensus 243 ~~~~i~~l~~----~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~----- 313 (374) +...|+.+.. .+++|+++.|+..+++.+..............++.+|++||||||..|.+.+......... T Consensus 76 ~~~~i~~i~~~~~~~~g~T~~~~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~iillTDG~~n~g~~~~~~~~~~~~~~~~ 155 (509) T 2odp_A 76 VISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNI 155 (509) T ss_dssp HHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTC T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 99999717345677899777999999999999987643023556667886299999488756699848999998766666 Q ss_pred -HHHHCCCEEEEEEECC-CCCHHHHHHHCCC--C--CEEEECCHHHHHHHHHHHHHH Q ss_conf -9997898799999248-2227889982389--8--179838989999999999984 Q gi|254780934|r 314 -EAKKRGAIVYAIGIRV-IRSHEFLRACASP--N--SFYLVENPHSMYDAFSHIGKD 364 (374) Q Consensus 314 -~~k~~gi~IytIg~~~-~~~~~~L~~~As~--~--~~~~a~~~~~L~~~f~~I~~~ 364 (374) ..++.+|.||+||+|. +.+.+.|+.+||. + |+|.++|.++|.++|++|-.+ T Consensus 156 ~~~~~~~v~i~~igvG~~~~d~~~L~~ias~~~~~~h~f~~~~~~~L~~~~~~i~~~ 212 (509) T 2odp_A 156 NQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLDV 212 (509) T ss_dssp CSTTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHEEC T ss_pred HHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCCC T ss_conf 566306965999995886458999999865999971599948888999999740442 No 2 >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Probab=99.91 E-value=5.4e-23 Score=154.24 Aligned_cols=184 Identities=17% Similarity=0.215 Sum_probs=142.6 Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECC----CCHHHHHHH Q ss_conf 7249999657864511313531379999998876322100236656734899998268505610204----786899999 Q gi|254780934|r 171 RLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLE----WGVSHLQRK 246 (374) Q Consensus 171 ~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t----~~~~~~~~~ 246 (374) .+||+||||.||||+. .+++.+|+++..+++.+... ....|++++.|++.+....+++ .++..++.. T Consensus 1 ~lDivfvlD~S~Sm~~------~~~~~~k~~~~~~i~~~~~~---~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~ 71 (497) T 1rrk_A 1 SMNIYLVLDGSDSIGA------SNFTGAKKVLVNLIEKVASY---GVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQ 71 (497) T ss_dssp CEEEEEEEECSTTTCH------HHHHHHHHHHHHHHHHHHHT---TCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHH T ss_pred CCCEEEEEECCCCCCH------HHHHHHHHHHHHHHHHCCCC---CCCEEEEEEEECCEEEEEECCCCCCCCCHHHHHHH T ss_conf 9458999957799986------99999999999999853658---99609999998781789973798775689999999 Q ss_pred HHHCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH--------- Q ss_conf 860133----6877444203676776432223333102578865642799980687788888068999999--------- Q gi|254780934|r 247 IKYLSK----FGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCN--------- 313 (374) Q Consensus 247 i~~l~~----~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~--------- 313 (374) |+.|.. .+++|++..++..+.+.+...... ......+.+|++||||||.+|.+.++........ T Consensus 72 i~~i~~~~~~~~g~T~~~~al~~a~~~~~~~~~~---~~~~~~~~~~viillTDG~~n~~~~p~~~~~~i~~~~~~~~~~ 148 (497) T 1rrk_A 72 LNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDV---PPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDR 148 (497) T ss_dssp HHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC---------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC T ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC---CCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9608566886888757999999999998652014---7555567875999997976777898789999999878777777 Q ss_pred -HHHHCCCEEEEEEECCCCCHHHHHHHCC--CC--CEEEECCHHHHHHHHHHHHHHHH Q ss_conf -9997898799999248222788998238--98--17983898999999999998420 Q gi|254780934|r 314 -EAKKRGAIVYAIGIRVIRSHEFLRACAS--PN--SFYLVENPHSMYDAFSHIGKDIV 366 (374) Q Consensus 314 -~~k~~gi~IytIg~~~~~~~~~L~~~As--~~--~~~~a~~~~~L~~~f~~I~~~i~ 366 (374) .+++.||.||+||+|.+.+.+.|+.+|+ ++ +||.+++.++|.++|.++..+-. T Consensus 149 ~~~~~~gi~i~~vgiG~~~d~~~L~~iAs~~~~~~~~f~~~d~~~L~~~~~~~~~~~~ 206 (497) T 1rrk_A 149 KNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVCKVKDMECLEDVFYQMIDESQ 206 (497) T ss_dssp -CCCGGGEEEEEEECSSSCCHHHHHHHSCCCTTCCCEEETTCHHHHHHHHHHHSCGGG T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCC T ss_conf 6687679079997368867999999875178985049994999999998753024660 No 3 >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Probab=99.91 E-value=8.5e-23 Score=153.05 Aligned_cols=189 Identities=17% Similarity=0.214 Sum_probs=147.2 Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCC----CHHHH Q ss_conf 77872499996578645113135313799999988763221002366567348999982685056102047----86899 Q gi|254780934|r 168 TDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEW----GVSHL 243 (374) Q Consensus 168 ~~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~----~~~~~ 243 (374) ..+++||+||||.||||.. .+++.+|+++..+++.+... ....|++++.|++.+....+++. ++... T Consensus 12 ~~~~~DivfvlD~SgSm~~------~~~~~~k~~~~~li~~~~~~---~~~~rvgvv~fs~~~~~~~~l~~~~~~~~~~~ 82 (223) T 1q0p_A 12 PSGSMNIYLVLDGSDSIGA------SNFTGAKKSLVNLIEKVASY---GVKPRYGLVTYATYPKIWVKVSEADSSNADWV 82 (223) T ss_dssp ---CEEEEEEEECSTTTCH------HHHHHHHHHHHHHHHHHHTT---TCCCEEEEEEESSSEEEEECTTSGGGGCHHHH T ss_pred CCCCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHCCC---CCCCEEEEEEECCCEEEEECCCCCCHHHHHHH T ss_conf 9898618999948888882------88999999999999973368---87758999997593789970786302456789 Q ss_pred HHHHHHCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH------ Q ss_conf 999860133----6877444203676776432223333102578865642799980687788888068999999------ Q gi|254780934|r 244 QRKIKYLSK----FGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCN------ 313 (374) Q Consensus 244 ~~~i~~l~~----~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~------ 313 (374) ...++.+.. .+++|++..++..+.+.+..... .......+..|++||+|||.+|.+.+.......+. T Consensus 83 ~~~~~~i~~~~~~~~g~T~~~~Al~~a~~~~~~~~~---~~~~~~~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~~~~~ 159 (223) T 1q0p_A 83 TKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDD---VPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIG 159 (223) T ss_dssp HHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTS---SCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCS T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 999985454216688897599999999999864011---46666777742899976887677898289999998633467 Q ss_pred ----HHHHCCCEEEEEEECCCCCHHHHHHHCCC----CCEEEECCHHHHHHHHHHHHHHHHEE Q ss_conf ----99978987999992482227889982389----81798389899999999999842001 Q gi|254780934|r 314 ----EAKKRGAIVYAIGIRVIRSHEFLRACASP----NSFYLVENPHSMYDAFSHIGKDIVTK 368 (374) Q Consensus 314 ----~~k~~gi~IytIg~~~~~~~~~L~~~As~----~~~~~a~~~~~L~~~f~~I~~~i~~~ 368 (374) .+++.|+.+|+||+|.+.+...|+.+|+. .+||.+.+.++|.++|.+|..+..++ T Consensus 160 ~~~~~~~~~g~~i~~igvg~~~~~~~L~~iAs~~~~~~~~~~~~d~~~L~~~~~~i~~e~~s~ 222 (223) T 1q0p_A 160 KDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSL 222 (223) T ss_dssp CBTTBCCGGGEEEEEEECSSCCCHHHHHHHSCCCTTCCCEEETTC-----------------C T ss_pred HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCC T ss_conf 999998767965999736875699999999749899747999089999999999999861478 No 4 >1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Probab=99.89 E-value=2.8e-21 Score=144.05 Aligned_cols=175 Identities=18% Similarity=0.176 Sum_probs=136.4 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCCCHHHHHHHHH Q ss_conf 78724999965786451131353137999999887632210023665673489999826850561020478689999986 Q gi|254780934|r 169 DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQRKIK 248 (374) Q Consensus 169 ~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~i~ 248 (374) ..++||+|++|.||||..+ +..+++.+..++..+. .+..|++++.|++.+....+++++....+..+. T Consensus 4 ~~~~DivfliD~S~Sm~~~-------~~~~k~~~~~~~~~~~-----~~~~rvglv~fs~~~~~~~~~~~~~~~~~~~l~ 71 (182) T 1shu_X 4 RRAFDLYFVLDKSGSVANN-------WIEIYNFVQQLAERFV-----SPEMRLSFIVFSSQATIILPLTGDRGKISKGLE 71 (182) T ss_dssp BSCEEEEEEEECSGGGGGG-------HHHHHHHHHHHHHHCC-----CTTEEEEEEEESSSEEEEEEEECCHHHHHHHHH T ss_pred CCCEEEEEEEECCCCCCCC-------HHHHHHHHHHHHHHHC-----CCCCEEEEEEECCCCEEECCCCCCHHHHHHHHH T ss_conf 9974699999389784327-------9999999999999735-----899879999960454152464355788999888 Q ss_pred HCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE Q ss_conf 0133--68774442036767764322233331025788656427999806877888880689999999997898799999 Q gi|254780934|r 249 YLSK--FGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIG 326 (374) Q Consensus 249 ~l~~--~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg 326 (374) .+.. .+++|+++.++..+.+.+.... ..+.++++|+||||..+.+. .......++.+|+.||.||+|| T Consensus 72 ~~~~~~~~g~T~~~~al~~~~~~~~~~~---------~~~~~~~ivllTDG~~~~~~-~~~~~~~a~~l~~~gv~v~~Vg 141 (182) T 1shu_X 72 DLKRVSPVGETYIHEGLKLANEQIQKAG---------GLKTSSIIIALTDGKLDGLV-PSYAEKEAKISRSLGASVYCVG 141 (182) T ss_dssp HHHTCCCCSCCCHHHHHHHHHHHHHHHT---------GGGSCEEEEEEECCCCCTTH-HHHHHHHHHHHHHTTCEEEEEE T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHC---------CCCCCEEEEEEECCCCCCCC-CHHHHHHHHHHHHCCCEEEEEE T ss_conf 7740679998469999999999987503---------67885599999728878886-4899999999997899999998 Q ss_pred ECCCCCHHHHHHHCC-CCCEEEEC-CHHHHHHHHHHHHHHHH Q ss_conf 248222788998238-98179838-98999999999998420 Q gi|254780934|r 327 IRVIRSHEFLRACAS-PNSFYLVE-NPHSMYDAFSHIGKDIV 366 (374) Q Consensus 327 ~~~~~~~~~L~~~As-~~~~~~a~-~~~~L~~~f~~I~~~i~ 366 (374) +|. .+...|+.+|+ +++.|.+. +.++|.+.+++|.+++| T Consensus 142 ig~-~~~~~L~~ia~~~~~~~~~~~~~~~L~~~~~~i~~~~C 182 (182) T 1shu_X 142 VLD-FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSC 182 (182) T ss_dssp CSS-CCHHHHHHHSSSGGGEEESSSTTHHHHHHHHHHHHTBC T ss_pred ECC-CCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHC T ss_conf 475-48999999858999669934999999999999986239 No 5 >3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for structural genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Probab=99.88 E-value=4.8e-21 Score=142.63 Aligned_cols=176 Identities=17% Similarity=0.223 Sum_probs=137.4 Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCCCHHHHHHHH Q ss_conf 77872499996578645113135313799999988763221002366567348999982685056102047868999998 Q gi|254780934|r 168 TDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQRKI 247 (374) Q Consensus 168 ~~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~i 247 (374) ++.++|++||+|.||||...+. ...|++.+|.++..+++.+. ..|++++.|++......+++.+.......+ T Consensus 8 ~r~g~divlvvD~SgSM~~~D~-~~~R~~~ak~~~~~~l~~~~-------~~rvglv~F~~~~~~~~~~t~~~~~~~~~~ 79 (218) T 3ibs_A 8 KRKGVEVIIALDISNSMLAQDV-QPSRLEKAKRLISRLVDELD-------NDKVGMIVFAGDAFTQLPITSDYISAKMFL 79 (218) T ss_dssp --CCCEEEEEEECSGGGGCCSS-SSCHHHHHHHHHHHHHHTCS-------SCEEEEEEESSSEEEEEEEESCHHHHHHHH T ss_pred CCCCCEEEEEEECCCCCCCCCC-CCCHHHHHHHHHHHHHHHCC-------CCEEEEEEECCCCCCCCCCCHHHHHHHHHH T ss_conf 4379589999979857788777-84899999999999995099-------976999997684420112430677888888 Q ss_pred HHCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEE Q ss_conf 60133---687744420367677643222333310257886564279998068778888806899999999978987999 Q gi|254780934|r 248 KYLSK---FGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYA 324 (374) Q Consensus 248 ~~l~~---~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~Iyt 324 (374) +.+.. ..++|++..++..+...+. ......++|||+|||+++.+. .......+++.++.+|+ T Consensus 80 ~~~~~~~~~~~gT~~~~al~~a~~~l~-----------~~~~~~~~iillSDG~~~~~~----~~~~~~~~~~~~~~~~~ 144 (218) T 3ibs_A 80 ESISPSLISKQGTAIGEAINLATRSFT-----------PQEGVGRAIIVITDGENHEGG----AVEAAKAAAEKGIQVSV 144 (218) T ss_dssp HTCCGGGCCSCSCCHHHHHHHHHTTSC-----------SCSSCCEEEEEEECCTTCCSC----HHHHHHHHHTTTEEEEE T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHH-----------HHCCCCCEEEEECCCCCCCCC----HHHHHHHHHHCCCEEEE T ss_conf 752214566899637899999998741-----------202677679996589988761----38999999876987999 Q ss_pred EEECCCC-------------------------CHHHHHHHC--CCCCEEEECCHHHHHHHHHHHHHHHH Q ss_conf 9924822-------------------------278899823--89817983898999999999998420 Q gi|254780934|r 325 IGIRVIR-------------------------SHEFLRACA--SPNSFYLVENPHSMYDAFSHIGKDIV 366 (374) Q Consensus 325 Ig~~~~~-------------------------~~~~L~~~A--s~~~~~~a~~~~~L~~~f~~I~~~i~ 366 (374) ++++.+. +..+|+.+| ++|+||++++.+++.++|.+...++- T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~iA~~tgG~y~~~~~~~~~~~~i~~~I~~l~ 213 (218) T 3ibs_A 145 LGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQEISKMA 213 (218) T ss_dssp EEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHHHHHHHH T ss_pred EEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHC T ss_conf 986268786211226775221467762433269999999999649189995287999999999997542 No 6 >1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhesion, glycoprotein, toxin/cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Probab=99.88 E-value=4.5e-21 Score=142.81 Aligned_cols=181 Identities=18% Similarity=0.251 Sum_probs=142.9 Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECC--CCHHHHHH Q ss_conf 7787249999657864511313531379999998876322100236656734899998268505610204--78689999 Q gi|254780934|r 168 TDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLE--WGVSHLQR 245 (374) Q Consensus 168 ~~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~~ 245 (374) .+..+|++||+|.|+||. .++.+|+.+..+++.+... ....|++++.|++.+....++. .+...+.. T Consensus 3 ~p~~~DivfvlD~S~S~~--------~~~~~k~f~~~~i~~~~i~---~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~ 71 (200) T 1v7p_C 3 SPSLIDVVVVCDESNSIY--------PWDAVKNFLEKFVQGLDIG---PTKTQVGLIQYANNPRVVFNLNTYKTKEEMIV 71 (200) T ss_dssp ---CEEEEEEEECCTTCC--------CHHHHHHHHHHHHHTSCBS---TTSEEEEEEEESSSEEEEECTTTCSSHHHHHH T ss_pred CCCCEEEEEEEECCCCCC--------CHHHHHHHHHHHHHHHCCC---CCCEEEEEEEECCCEEEEECCCCHHHHHHHHH T ss_conf 987166999997989886--------7999999999999971558---87608999997595467406642115899999 Q ss_pred HHHHCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEE Q ss_conf 98601336-87744420367677643222333310257886564279998068778888806899999999978987999 Q gi|254780934|r 246 KIKYLSKF-GVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYA 324 (374) Q Consensus 246 ~i~~l~~~-g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~Iyt 324 (374) .++.+... |++|+++.|+.++.+.+...... ..++.+|++||+|||.++. .......+..+|+.||.||+ T Consensus 72 ~i~~i~~~~g~~t~~~~AL~~a~~~~f~~~~~------~r~~~~kvivllTDG~~~d---~~~~~~~~~~~~~~gi~i~~ 142 (200) T 1v7p_C 72 ATSQTSQYGGDLTNTFGAIQYARKYAYSAASG------GRRSATKVMVVVTDGESHD---GSMLKAVIDQCNHDNILRFG 142 (200) T ss_dssp HHHHCCCCCCSCCCHHHHHHHHHHHTTSGGGT------CCTTSEEEEEEEESSCCSC---GGGHHHHHHHHHHTTEEEEE T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC------CCCCCCEEEEEEECCCCCC---CCCHHHHHHHHHCCCEEEEE T ss_conf 98763067999642899999999973373558------8888855599982798888---61139999987648909999 Q ss_pred EEECCCC---------CHHHHHHHCCCC---CEEEECCHHHHHHHHHHHHHHHHEE Q ss_conf 9924822---------278899823898---1798389899999999999842001 Q gi|254780934|r 325 IGIRVIR---------SHEFLRACASPN---SFYLVENPHSMYDAFSHIGKDIVTK 368 (374) Q Consensus 325 Ig~~~~~---------~~~~L~~~As~~---~~~~a~~~~~L~~~f~~I~~~i~~~ 368 (374) ||++... ..+.|+.+||.+ ++|.+++.++|.+.+++|.++||+. T Consensus 143 Igvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~d~~~L~~~~~~l~~~ic~i 198 (200) T 1v7p_C 143 IAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIFSI 198 (200) T ss_dssp EEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHHTC T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCC T ss_conf 99777445565443125999999866998613999389999999999999772056 No 7 >1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Probab=99.87 E-value=7e-21 Score=141.62 Aligned_cols=180 Identities=21% Similarity=0.286 Sum_probs=141.4 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECC--CCHHHHHHH Q ss_conf 787249999657864511313531379999998876322100236656734899998268505610204--786899999 Q gi|254780934|r 169 DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLE--WGVSHLQRK 246 (374) Q Consensus 169 ~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~~~ 246 (374) ..++||+||+|.|+||.. ++.+|+.+..+++.+... ....|++++.|+..+....+++ .++..+... T Consensus 5 ~~~~DivfvlD~S~S~~~--------f~~~k~f~~~~i~~~~~~---~~~~rv~vv~y~~~~~~~~~l~~~~~~~~~~~~ 73 (213) T 1pt6_A 5 STQLDIVIVLDGSNSIYP--------WDSVTAFLNDLLKRMDIG---PKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVA 73 (213) T ss_dssp --CEEEEEEEECCTTCCC--------HHHHHHHHHHHHTTSCBS---TTSBEEEEEEESSSEEEEECTTTCSSHHHHHHH T ss_pred CCCEEEEEEEECCCCCCC--------HHHHHHHHHHHHHHHCCC---CCCCEEEEEEEEEEEEEEECCCCCCCHHHHHHH T ss_conf 984489999979888878--------899999999999972448---877378899974236899776556779999999 Q ss_pred HHHCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEE Q ss_conf 860133687-7444203676776432223333102578865642799980687788888068999999999789879999 Q gi|254780934|r 247 IKYLSKFGV-STNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAI 325 (374) Q Consensus 247 i~~l~~~g~-~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytI 325 (374) ++.+...++ +|+++.++..+...+...... ..++.+|++||+|||..+. .......++.+|+.||+||+| T Consensus 74 i~~~~~~~g~~t~~~~al~~a~~~~~~~~~g------~R~~~~k~villTDG~~~d---~~~~~~~~~~lk~~gi~v~~V 144 (213) T 1pt6_A 74 AKKIVQRGGRQTMTALGTDTARKEAFTEARG------ARRGVKKVMVIVTDGESHD---NHRLKKVIQDCEDENIQRFSI 144 (213) T ss_dssp HHTCCCCCCSSCCHHHHHHHHHHTTTSGGGT------CCTTCEEEEEEEESSCCSC---SHHHHHHHHHHHHTTEEEEEE T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCCCCC------CCCCCEEEEEEEECCCCCC---CHHHHHHHHHHHHCCCEEEEE T ss_conf 8777750784100212343444320132247------8778668999984698788---415999999999889999999 Q ss_pred EECCCCC---------HHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHHHHEE Q ss_conf 9248222---------7889982389---81798389899999999999842001 Q gi|254780934|r 326 GIRVIRS---------HEFLRACASP---NSFYLVENPHSMYDAFSHIGKDIVTK 368 (374) Q Consensus 326 g~~~~~~---------~~~L~~~As~---~~~~~a~~~~~L~~~f~~I~~~i~~~ 368 (374) |+|...+ .+.|+.+||. .++|.+++.++|.+++++|.+.|++. T Consensus 145 gvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~~~~~L~~i~~~l~~~ic~~ 199 (213) T 1pt6_A 145 AILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFAL 199 (213) T ss_dssp EECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHTC- T ss_pred EECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCC T ss_conf 9747655454333246999999866998540898089999999999999997246 No 8 >2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Probab=99.87 E-value=5.7e-21 Score=142.16 Aligned_cols=182 Identities=20% Similarity=0.293 Sum_probs=143.1 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCC--CHHHHHHH Q ss_conf 7872499996578645113135313799999988763221002366567348999982685056102047--86899999 Q gi|254780934|r 169 DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEW--GVSHLQRK 246 (374) Q Consensus 169 ~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~~~ 246 (374) ..++|++|++|.|+||.. ++..|+.+..++..+.. .....|++++.|+..+....+++. ++..+... T Consensus 20 ~~~~DivfvlD~S~sv~~--------~~~~k~fv~~li~~~~i---~~~~~rv~lv~fs~~~~~~~~l~~~~~~~~~~~~ 88 (223) T 2b2x_A 20 STQLDIVIVLDGSNSIYP--------WESVIAFLNDLLKRMDI---GPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVA 88 (223) T ss_dssp --CEEEEEEEECSTTCCC--------HHHHHHHHHHHHTTSCC---STTSCCEEEEEESSSEEEEECTTTCCSHHHHHHH T ss_pred CCCEEEEEEEECCCCCCC--------HHHHHHHHHHHHHHCCC---CCCCCEEEEEEEECCEEEECCCCCCCCHHHHHHH T ss_conf 986569999979887436--------99999999999997155---8886089899860426786054555768999999 Q ss_pred HHHCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEE Q ss_conf 86013368-77444203676776432223333102578865642799980687788888068999999999789879999 Q gi|254780934|r 247 IKYLSKFG-VSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAI 325 (374) Q Consensus 247 i~~l~~~g-~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytI 325 (374) ++.+...| ++|+++.++.++.+.+...... ..++.+|++||+|||..+. .......+..+|+.||+||+| T Consensus 89 i~~i~~~~~~~t~~~~aL~~~~~~~~~~~~g------~R~~~~kvlillTDG~~~d---~~~~~~~a~~lk~~gi~v~~I 159 (223) T 2b2x_A 89 ANKIVQRGGRQTMTALGIDTARKEAFTEARG------ARRGVKKVMVIVTDGESHD---NYRLKQVIQDCEDENIQRFSI 159 (223) T ss_dssp HTTCCCCCCSSCCHHHHHHHHHHTTSSGGGT------CCTTSEEEEEEEESSCCTT---GGGHHHHHHHHHTTTEEEEEE T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHCCCCCC------CCCCCCEEEEEEECCCCCC---CHHHHHHHHHHHHCCCEEEEE T ss_conf 8743124773322177788888875033358------8878725799982698788---312999999998759989999 Q ss_pred EECCCCCH---------HHHHHHCCC---CCEEEECCHHHHHHHHHHHHHHHHEEEE Q ss_conf 92482227---------889982389---8179838989999999999984200166 Q gi|254780934|r 326 GIRVIRSH---------EFLRACASP---NSFYLVENPHSMYDAFSHIGKDIVTKRI 370 (374) Q Consensus 326 g~~~~~~~---------~~L~~~As~---~~~~~a~~~~~L~~~f~~I~~~i~~~~~ 370 (374) |+|...+. +.|+.+||. .++|.+++.++|.+++++|.+.|+.... T Consensus 160 gvg~~~~~~~~~~~~~~~eL~~IAs~p~~~~~f~~~d~~~L~~i~~~l~~~ic~~e~ 216 (223) T 2b2x_A 160 AILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERIFALEA 216 (223) T ss_dssp EECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGHHHHHTTTC---- T ss_pred EEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCC T ss_conf 984666644324423699999986699855189818999999999999988643103 No 9 >3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell adhesion, cleavage on PAIR of basic residues, disease mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens} Probab=99.87 E-value=2e-20 Score=138.96 Aligned_cols=172 Identities=12% Similarity=0.164 Sum_probs=139.1 Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECC--CCHHHHHHHHH Q ss_conf 7249999657864511313531379999998876322100236656734899998268505610204--78689999986 Q gi|254780934|r 171 RLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLE--WGVSHLQRKIK 248 (374) Q Consensus 171 ~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~~~i~ 248 (374) .+|++|++|.|+||... .++.+|+.+..+++.+... ....|++++.|++.+....++. .++..+...|+ T Consensus 2 vlDivfllD~S~Sv~~~------~f~~~k~fi~~~i~~l~i~---~~~~rvgvv~fs~~~~~~~~l~~~~~~~~~~~~i~ 72 (184) T 3gxb_A 2 VLDVAFVLEGSDKIGEA------DFNRSKEFMEEVIQRMDVG---QDSIHVTVLQYSYMVTVEYPFSEAQSKGDILQRVR 72 (184) T ss_dssp CEEEEEEEECSTTTCHH------HHHHHHHHHHHHHHTSCBC---TTSEEEEEEEESSSEEEEECTTSCCCHHHHHHHHH T ss_pred CEEEEEEEECCCCCCHH------HHHHHHHHHHHHHHHCCCC---CCCEEEEEEEECCCEEEEEECCCCCCHHHHHHHHH T ss_conf 16899999798998979------9999999999999963659---87349999885471789984687677799999863 Q ss_pred HCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 0133687-744420367677643222333310257886564279998068778888806899999999978987999992 Q gi|254780934|r 249 YLSKFGV-STNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGI 327 (374) Q Consensus 249 ~l~~~g~-~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~ 327 (374) .++..++ +|+++.++.++.+.+...... ..++.+|++||+|||..+..-. .+.+||+||+||+ T Consensus 73 ~i~~~~g~~t~~~~AL~~~~~~~f~~~~~------~R~~~~kvivllTdG~s~d~~~----------~~~~gi~i~~vgv 136 (184) T 3gxb_A 73 EIRYQGGNRTNTGLALRYLSDHSFLVSQG------DREQAPNLVYMVTGNPASDEIK----------RLPGDIQVVPIGV 136 (184) T ss_dssp TCCCCCCSCCCHHHHHHHHHHTGGGSCCG------GGGGSCEEEEEEECSCCSSCCC----------CCCTTEEEEEEEE T ss_pred HHHCCCCCCCCHHHHHHHHHHHHCCCCCC------CCCCCCEEEEEECCCCCCHHHH----------HHHCCCEEEEEEC T ss_conf 00113776541799999999985263448------9999966999965999706899----------9848998999984 Q ss_pred CCCCCHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHE Q ss_conf 4822278899823898179838989999999999984200 Q gi|254780934|r 328 RVIRSHEFLRACASPNSFYLVENPHSMYDAFSHIGKDIVT 367 (374) Q Consensus 328 ~~~~~~~~L~~~As~~~~~~a~~~~~L~~~f~~I~~~i~~ 367 (374) |...+.+.|+.+|+++++|.+++.++|.+.+.+|.++++- T Consensus 137 G~~~~~~~L~~ia~~~~~~~~~~~~~L~~~~~~l~~~~cc 176 (184) T 3gxb_A 137 GPNANVQELERIGWPNAPILIQDFETLPREAPDLVLQRCC 176 (184) T ss_dssp STTSCHHHHHHHHTTSCCEEESCTTTHHHHHHHHHHHHHC T ss_pred CCCCCHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCC T ss_conf 6747999999873999779948999999999999975469 No 10 >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement system, convertase, complement alternate pathway, complement pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A* Probab=99.87 E-value=2.6e-20 Score=138.20 Aligned_cols=190 Identities=16% Similarity=0.199 Sum_probs=146.3 Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECC----CCHHHH Q ss_conf 7787249999657864511313531379999998876322100236656734899998268505610204----786899 Q gi|254780934|r 168 TDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLE----WGVSHL 243 (374) Q Consensus 168 ~~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t----~~~~~~ 243 (374) ...++|++|++|.|+||... +++.+++.++.+++.+...+ ...|++++.|++.......++ .++..+ T Consensus 240 ~~~~~Dl~f~lD~S~s~~~~------~f~~~k~f~~~lv~~~~~~~---~~~rv~vi~ys~~~~~~~~l~~~~~~~~~~~ 310 (741) T 3hrz_D 240 PSGSMNIYLVLDGSGSIGAS------DFTGAKKCLVNLIEKVASYG---VKPRYGLVTYATYPKIWVKVSEADSSNADWV 310 (741) T ss_dssp TTCEEEEEEEEECSTTTCHH------HHHHHHHHHHHHHHHHHHTT---CCCEEEEEEESSSEEEEECTTSGGGGCHHHH T ss_pred CCCCCEEEEEEECCCCCCHH------HHHHHHHHHHHHHHHCCCCC---CCCEEEEEEECCCCEEEEECCCCCCCCHHHH T ss_conf 68881389999656654877------89999999999998634688---8746999996477158885166667899999 Q ss_pred HHHHHHCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH------- Q ss_conf 999860133----687744420367677643222333310257886564279998068778888806899999------- Q gi|254780934|r 244 QRKIKYLSK----FGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYC------- 312 (374) Q Consensus 244 ~~~i~~l~~----~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~------- 312 (374) ...|+.|.. .+++|+++.|+.++.+.+..... +......+.+|++||+|||..+.+..+....... T Consensus 311 ~~~i~~i~~~~~~~~ggT~t~~Al~~~~~~~~~~~~---~~~~~~~~~~~vlillTDG~s~~g~~p~~~~~~~~~~~~~~ 387 (741) T 3hrz_D 311 TKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDD---VPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIG 387 (741) T ss_dssp HHHHTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC-----CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCS T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 999971776667788875899999999986421101---57555678985999989986557888324444322122234 Q ss_pred ---HHHHHCCCEEEEEEECCCCCHHHHHHHCC-C---CCEEEECCHHHHHHHHHHHHHHHHEEE Q ss_conf ---99997898799999248222788998238-9---817983898999999999998420016 Q gi|254780934|r 313 ---NEAKKRGAIVYAIGIRVIRSHEFLRACAS-P---NSFYLVENPHSMYDAFSHIGKDIVTKR 369 (374) Q Consensus 313 ---~~~k~~gi~IytIg~~~~~~~~~L~~~As-~---~~~~~a~~~~~L~~~f~~I~~~i~~~~ 369 (374) +.+++.||.||+||+|.+.+...|+.+|+ + .++|.+.+.++|.+++.+|.+..+..+ T Consensus 388 ~~~~~~~~~gi~i~~igvg~~~~~~~L~~iAs~~~~~~~v~~~~d~~~L~~~~~~~~~~~~~~~ 451 (741) T 3hrz_D 388 KDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLS 451 (741) T ss_dssp SCTTCCCGGGEEEEEEECSSSCCHHHHHHHSCCCTTCCCEECBSSHHHHHHHHHHHHHHHSCTT T ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCC T ss_conf 6677788789399999867758999999997088886239996899998888744300232344 No 11 >1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 2adf_A 1fe8_A 1ao3_A Probab=99.86 E-value=1.7e-20 Score=139.39 Aligned_cols=178 Identities=14% Similarity=0.144 Sum_probs=139.6 Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECC--CCHHHHHHHH Q ss_conf 87249999657864511313531379999998876322100236656734899998268505610204--7868999998 Q gi|254780934|r 170 ARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLE--WGVSHLQRKI 247 (374) Q Consensus 170 ~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~~~i 247 (374) .++||+||+|.|+||... +++.+|..+..+++.+.. .....|++++.|++.+....++. .+++.+...| T Consensus 4 ~~~DivfllD~S~s~~~~------~~~~~k~fv~~~i~~~~i---~~~~~rv~vv~y~~~~~~~~~l~~~~~~~~~~~~i 74 (189) T 1atz_A 4 QPLDVILLLDGSSSFPAS------YFDEMKSFAKAFISKANI---GPRLTQVSVLQYGSITTIDVPWNVVPEKAHLLSLV 74 (189) T ss_dssp CCEEEEEEEECSSSSCHH------HHHHHHHHHHHHHHHSCB---STTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHH T ss_pred CCEEEEEEEECCCCCCHH------HHHHHHHHHHHHHHHCCC---CCCCCEEEEEEEEEEEEEEEEEECCCCHHHHHHHH T ss_conf 857899999487998868------999999999999997075---88874899999750138999852367589999999 Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 60133687744420367677643222333310257886564279998068778888806899999999978987999992 Q gi|254780934|r 248 KYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGI 327 (374) Q Consensus 248 ~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~ 327 (374) +.+...|++|+++.++.++.+.+....... .++.+|++|++|||..+.. ....++.+|+.||+||+||+ T Consensus 75 ~~l~~~gg~t~~~~al~~a~~~~~~~~~g~------R~~a~k~vvlltdg~~~~~-----~~~~~~~lk~~~i~v~~igi 143 (189) T 1atz_A 75 DVMQREGGPSQIGDALGFAVRYLTSEMHGA------RPGASKAVVILVTDVSVDS-----VDAAADAARSNRVTVFPIGI 143 (189) T ss_dssp HTCCCCCCCCCHHHHHHHHHHHHHSCCTTC------CTTSEEEEEEEECSCCSSC-----CHHHHHHHHHTTEEEEEEEE T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHCCC------CCCCEEEEEEEECCCCCCC-----HHHHHHHHHHCCCEEEEEEE T ss_conf 988743778763257899999974010279------9988058999925998651-----89999999988999999995 Q ss_pred CCCCCHHHHHHHCCC---CCEEEECCHHHHH---HHHHHHHHHHHE Q ss_conf 482227889982389---8179838989999---999999984200 Q gi|254780934|r 328 RVIRSHEFLRACASP---NSFYLVENPHSMY---DAFSHIGKDIVT 367 (374) Q Consensus 328 ~~~~~~~~L~~~As~---~~~~~a~~~~~L~---~~f~~I~~~i~~ 367 (374) |...+.+.|+.+|+. .+.|.+.+.++|. +..+.|.+.||+ T Consensus 144 g~~~~~~~l~~ia~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~iC~ 189 (189) T 1atz_A 144 GDRYDAAQLRILAGPAGDSNVVKLQRIEDLPTMVTLGNSFLHKLCS 189 (189) T ss_dssp SSSSCHHHHHHHTGGGGGGGCEEESSTTHHHHHHHSCSHHHHHC-- T ss_pred CCCCCHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCC T ss_conf 8869999999985788877589946876688899999999884477 No 12 >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Probab=99.86 E-value=4.5e-21 Score=142.79 Aligned_cols=183 Identities=20% Similarity=0.271 Sum_probs=142.8 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCC--CHHHHH Q ss_conf 377872499996578645113135313799999988763221002366567348999982685056102047--868999 Q gi|254780934|r 167 QTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEW--GVSHLQ 244 (374) Q Consensus 167 ~~~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~ 244 (374) ..+.+.||+||+|.|+||... .++.+|+++..+++.+. ....|++++.|+..+....+++. +...+. T Consensus 5 ~~~~~~DivfvlD~S~Sm~~~------~~~~~k~~i~~li~~l~-----~~~~rv~vv~f~~~~~~~~~l~~~~~~~~~~ 73 (198) T 1n3y_A 5 ASRQEQDIVFLIDGSGSISSR------NFATMMNFVRAVISQFQ-----RPSTQFSLMQFSNKFQTHFTFEEFRRSSNPL 73 (198) T ss_dssp ---CCEEEEEEEECCTTSCHH------HHHHHHHHHHHHHTTSC-----TTTEEEEEEEESSSEEEEECHHHHHHCSSGG T ss_pred CCCCCCCEEEEEECCCCCCHH------HHHHHHHHHHHHHHHHC-----CCCCEEEEEEEECCEEEECCCCCCCCHHHHH T ss_conf 668886489999687998879------99999999999999708-----9985899999834323412666643389999 Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEE Q ss_conf 99860133687744420367677643222333310257886564279998068778888806899999999978987999 Q gi|254780934|r 245 RKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYA 324 (374) Q Consensus 245 ~~i~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~Iyt 324 (374) ..++.+...+++|+++.++.++.+.+..... ...++.+|++||+|||..+... ......++.+|+.||.||+ T Consensus 74 ~~i~~~~~~~~~t~~~~al~~a~~~~~~~~~------~~r~~~~kvivlltDG~~~~~~--~~~~~~~~~~~~~gv~i~~ 145 (198) T 1n3y_A 74 SLLASVHQLQGFTYTATAIQNVVHRLFHASY------GARRDAAKILIVITDGKKEGDS--LDYKDVIPMADAAGIIRYA 145 (198) T ss_dssp GGGTTCCCCCSCBCHHHHHHHHHTTTTSGGG------TCCTTSEEEEEEEESSCCBSCS--SCHHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------CCCCCCCCEEEEEECCCCCCCC--CCHHHHHHHHHHCCCEEEE T ss_conf 9887654036987388999999999842320------5778764259999358988872--0599999999978988999 Q ss_pred EEECCC----CCHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHHHHEE Q ss_conf 992482----227889982389---81798389899999999999842001 Q gi|254780934|r 325 IGIRVI----RSHEFLRACASP---NSFYLVENPHSMYDAFSHIGKDIVTK 368 (374) Q Consensus 325 Ig~~~~----~~~~~L~~~As~---~~~~~a~~~~~L~~~f~~I~~~i~~~ 368 (374) ||++.. .+.+.|+.+|+. .++|.+++.++|.+++++|.+.||.. T Consensus 146 Ig~g~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~~i~~~l~~~ic~~ 196 (198) T 1n3y_A 146 IGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFAI 196 (198) T ss_dssp EEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGGGGGGGHHHHHHHHHTC T ss_pred EEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCC T ss_conf 997876677534999999866998651999299999999999999873167 No 13 >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1 Probab=99.86 E-value=1.3e-20 Score=140.13 Aligned_cols=180 Identities=19% Similarity=0.278 Sum_probs=140.6 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCC--CHHHHHHH Q ss_conf 7872499996578645113135313799999988763221002366567348999982685056102047--86899999 Q gi|254780934|r 169 DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEW--GVSHLQRK 246 (374) Q Consensus 169 ~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~~~ 246 (374) ..++||+||+|.|+||... .++.+|+.+..+++.+.. ..+|++++.|++.+....+++. +...+... T Consensus 3 ~~~~DivfvlD~S~s~~~~------~f~~~k~~i~~~i~~l~~-----~~~rvgvv~f~~~~~~~~~l~~~~~~~~~~~~ 71 (194) T 1mf7_A 3 QEDSDIAFLIDGSGSIIPH------DFRRMKEFVSTVMEQLKK-----SKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSL 71 (194) T ss_dssp CCCEEEEEEEECCTTSCHH------HHHHHHHHHHHHHHHHCC-----TTEEEEEEEESSSEEEEECHHHHHHSCCHHHH T ss_pred CCCEEEEEEEECCCCCCHH------HHHHHHHHHHHHHHHCCC-----CCCEEEEEEEEEEEEEEECCCCCCCHHHHHHH T ss_conf 9871799999598998879------999999999999997198-----88089999965403775114663668999987 Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE Q ss_conf 86013368774442036767764322233331025788656427999806877888880689999999997898799999 Q gi|254780934|r 247 IKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIG 326 (374) Q Consensus 247 i~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg 326 (374) |+.++..+++|+++.++.++.+.+..... ...++.+|++||+|||..+.... .+......+|+.||+||+|| T Consensus 72 i~~l~~~~g~t~~~~al~~a~~~~~~~~~------~~~~~~~kvvvl~tDG~~~~~~~--~~~~~~~~l~~~gv~v~~Vg 143 (194) T 1mf7_A 72 VKPITQLLGRTHTATGIRKVVRELFNITN------GARKNAFKILVVITDGEKFGDPL--GYEDVIPEADREGVIRYVIG 143 (194) T ss_dssp HTTCCCCCSCBCHHHHHHHHHHTTTSGGG------TCCTTSEEEEEEEESSCCBSCSS--CGGGTHHHHHHTTEEEEEEE T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHC------CCCCCCCEEEEEEECCCCCCCHH--HHHHHHHHHHHCCCEEEEEE T ss_conf 64134236986699999999998741432------67677664999994788789804--49999999997799999999 Q ss_pred ECCCC----CHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHHHHE Q ss_conf 24822----27889982389---8179838989999999999984200 Q gi|254780934|r 327 IRVIR----SHEFLRACASP---NSFYLVENPHSMYDAFSHIGKDIVT 367 (374) Q Consensus 327 ~~~~~----~~~~L~~~As~---~~~~~a~~~~~L~~~f~~I~~~i~~ 367 (374) ++... +.+.|+.+|+. .++|.+++.++|.+.++.|.++|+. T Consensus 144 i~~~~~~~~~~~~L~~iAs~~~~~~~~~v~~~~~L~~~~~~l~~~i~~ 191 (194) T 1mf7_A 144 VGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIFC 191 (194) T ss_dssp ESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHHT T ss_pred ECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCC T ss_conf 788766634699999986699866089949999999999999876414 No 14 >1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Probab=99.83 E-value=1.3e-18 Score=128.14 Aligned_cols=182 Identities=16% Similarity=0.241 Sum_probs=141.2 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCC--CHHHHHHH Q ss_conf 7872499996578645113135313799999988763221002366567348999982685056102047--86899999 Q gi|254780934|r 169 DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEW--GVSHLQRK 246 (374) Q Consensus 169 ~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~~~ 246 (374) ..++|++||||.||||+.. +++.+|+++..+++.+... ....+++++.|+.......++.. +...+... T Consensus 11 ~~~~DlvfvlD~SgSm~~~------~~~~~k~~~~~li~~l~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (202) T 1ijb_A 11 SRLLDLVFLLDGSSRLSEA------EFEVLKAFVVDMMERLRVS---QKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRI 81 (202) T ss_dssp CSCEEEEEEEECBTTSCHH------HHHHHHHHHHHHHHTBCBS---TTSEEEEEEEESSSEEEEECTTCCCCHHHHHHH T ss_pred CCCEEEEEEEECCCCCCHH------HHHHHHHHHHHHHHHCCCC---CCCCEEEEEEECCCEEEEEECCCCCCHHHHHHH T ss_conf 9873489999688998858------9999999999999866678---887368887742632688606753149999999 Q ss_pred HHHCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEE Q ss_conf 8601336-877444203676776432223333102578865642799980687788888068999999999789879999 Q gi|254780934|r 247 IKYLSKF-GVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAI 325 (374) Q Consensus 247 i~~l~~~-g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytI 325 (374) +..+... |++++...++.+....+... ......+|.+|+++||..+.... ......+..+|+.||+||+| T Consensus 82 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~a~~l~~~gi~i~~i 152 (202) T 1ijb_A 82 ASQVKYAGSQVASTSEVLKYTLFQIFSK--------IDRPEASRIALLLMASQEPQRMS-RNFVRYVQGLKKKKVIVIPV 152 (202) T ss_dssp HHTCCCCCBSCCCHHHHHHHHHHHTSSS--------CSCTTSEEEEEEEECCCCCGGGC-TTHHHHHHHHHHTTEEEEEE T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHH--------CCCCCCCEEEEEEEECCCCCCCC-HHHHHHHHHHHHCCCEEEEE T ss_conf 9755404775204999999999755442--------05776521358999536898632-44999999998679889999 Q ss_pred EECCCCCHHHHHHHC---CCCCEEEECCHHHHHHHHHHHHHHHHEE Q ss_conf 924822278899823---8981798389899999999999842001 Q gi|254780934|r 326 GIRVIRSHEFLRACA---SPNSFYLVENPHSMYDAFSHIGKDIVTK 368 (374) Q Consensus 326 g~~~~~~~~~L~~~A---s~~~~~~a~~~~~L~~~f~~I~~~i~~~ 368 (374) |+|.+.+.+.|+.+| ++.++|.+++.++|.+++++|.+.||.. T Consensus 153 giG~~~~~~~l~~ia~~~~~~~~~~~~~~~~l~~~~~~i~~~iC~~ 198 (202) T 1ijb_A 153 GIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDL 198 (202) T ss_dssp EESTTSCHHHHHHHHHHCTTCCCEEESSGGGHHHHHHHHHHHHHHH T ss_pred EECCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHCCC T ss_conf 9678469999999973799761899489999999999999986288 No 15 >2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Probab=99.78 E-value=2.4e-17 Score=120.57 Aligned_cols=153 Identities=15% Similarity=0.149 Sum_probs=122.4 Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCC-EEEEECCCCHHHHHHHHHHC Q ss_conf 24999965786451131353137999999887632210023665673489999826850-56102047868999998601 Q gi|254780934|r 172 LDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKI-EEFFLLEWGVSHLQRKIKYL 250 (374) Q Consensus 172 ~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~i~~l 250 (374) -.+++|+|.||||... +..+.|++.+|+++..+++.+....+ ..+++++.|.... ....+++.++..+...++.+ T Consensus 3 ea~viviD~S~SM~~~-D~~p~Rl~~ak~a~~~li~~~~~~~~---~~~vg~v~~~~~~~~~~~~~~~~~~~~~~~i~~l 78 (192) T 2x5n_A 3 EATMILIDNSEWMING-DYIPTRFEAQKDTVHMIFNQKINDNP---ENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDL 78 (192) T ss_dssp EEEEEEECCSGGGGCT-TSSSCHHHHHHHHHHHHHHHHHHHCT---TCEEEEEECCTTSCCEEEEEESCHHHHHHHHTTC T ss_pred EEEEEEEECCHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHCCC---CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCC T ss_conf 7999999898554378-98978999999999999998764597---7749998605764301478840899999874023 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC Q ss_conf 33687744420367677643222333310257886564279998068778888806899999999978987999992482 Q gi|254780934|r 251 SKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVI 330 (374) Q Consensus 251 ~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~~~~ 330 (374) .+.| +|+++.|+..|+..+... .....++.++++|||..+. +.......++.+++.||+||+||||.+ T Consensus 79 ~~~G-~T~l~~al~~A~~~l~~~---------~~~~~~~~iil~tdg~~~~--~~~~~~~~a~~~~~~~i~i~~Ig~G~~ 146 (192) T 2x5n_A 79 PVRG-NAKFGDGIQIAQLALKHR---------ENKIQRQRIVAFVGSPIVE--DEKNLIRLAKRMKKNNVAIDIIHIGEL 146 (192) T ss_dssp CCCS-CCCHHHHHHHHHHHHHTC---------SCTTSEEEEEEEECSCCSS--CHHHHHHHHHHHHHTTEEEEEEEESCC T ss_pred CCCC-CCCCCHHHHHHHHHHHHH---------HHCCCCEEEEEEECCCCCC--CHHHHHHHHHHHCCCCCEEEEEEEECC T ss_conf 4468-765227999999999862---------1104650699996889753--067899999985135750799997176 Q ss_pred CCHHHHHHHC Q ss_conf 2278899823 Q gi|254780934|r 331 RSHEFLRACA 340 (374) Q Consensus 331 ~~~~~L~~~A 340 (374) .+.+.|+.++ T Consensus 147 ~~~~~l~~~~ 156 (192) T 2x5n_A 147 QNESALQHFI 156 (192) T ss_dssp ---CHHHHHH T ss_pred CCHHHHHHHH T ss_conf 7879999999 No 16 >2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Probab=99.75 E-value=6.9e-17 Score=117.84 Aligned_cols=156 Identities=19% Similarity=0.241 Sum_probs=119.6 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCC----CHHH Q ss_conf 377872499996578645113135313799999988763221002366567348999982685056102047----8689 Q gi|254780934|r 167 QTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEW----GVSH 242 (374) Q Consensus 167 ~~~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~----~~~~ 242 (374) ....++||+||+|.||||.. .+++.+|+++..+++.+... ....+++++.|........++.. +... T Consensus 13 ~~~~~lDivfvlD~S~Sm~~------~~~~~~k~~v~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (178) T 2xgg_A 13 MGTNQLDICFLIDSSGSIGI------QNFRLVKQFLHTFLMVLPIG---PEEVNNAVVTYSTDVHLQWDLQSPNAVDKQL 83 (178) T ss_dssp -CTTCEEEEEEEECCTTTCH------HHHHHHHHHHHHHHHHSCBS---TTSEEEEEEEESSSEEEEECTTSGGGSCHHH T ss_pred CCCCCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHHCC---CCCEEEEEEECCCCEEEEEECCCCCCHHHHH T ss_conf 89998769999958899884------89999999999999985035---7613999874044303664024431042999 Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEE Q ss_conf 99998601336877444203676776432223333102578865642799980687788888068999999999789879 Q gi|254780934|r 243 LQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIV 322 (374) Q Consensus 243 ~~~~i~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~I 322 (374) +...++.+...+.+++.+.++..+...+.... .....+.+|++|+||||+++. .......++.+|+.||+| T Consensus 84 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~------~~~~~~~~~vviliTDG~~~~---~~~~~~~a~~lk~~gi~I 154 (178) T 2xgg_A 84 AAHAVLDMPYKKGSTNTSDGLKACKQILFTGS------RPGREHVPKLVIGMTDGESDS---DFRTVRAAKEIRELGGIV 154 (178) T ss_dssp HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC------CTTCTTSCEEEEEEESSCCCH---HHHHSHHHHHHHHTTCEE T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC------CCCCCCCCEEEEEEECCCCCC---CCCHHHHHHHHHHCCCEE T ss_conf 99999862302365507899999999875330------378652301369984388788---737999999999789989 Q ss_pred EEEEECCCCCHHHHHHHC Q ss_conf 999924822278899823 Q gi|254780934|r 323 YAIGIRVIRSHEFLRACA 340 (374) Q Consensus 323 ytIg~~~~~~~~~L~~~A 340 (374) |+||+|.....++|..-+ T Consensus 155 ~~iGiG~~~~~ell~~~~ 172 (178) T 2xgg_A 155 TVLAVGHYVAAALVPRGS 172 (178) T ss_dssp EEEECC------------ T ss_pred EEEEECCCCHHHCCCCCC T ss_conf 999978752442566664 No 17 >1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... Probab=99.72 E-value=6.1e-17 Score=118.19 Aligned_cols=170 Identities=19% Similarity=0.252 Sum_probs=130.2 Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEC--CCCHHHHHHHH Q ss_conf 8724999965786451131353137999999887632210023665673489999826850561020--47868999998 Q gi|254780934|r 170 ARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLL--EWGVSHLQRKI 247 (374) Q Consensus 170 ~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~i 247 (374) +++||+||+|.||||... +++.+|+++..+++.+.. ...+++++.|.........+ ..++..+...+ T Consensus 1 g~~DivfllD~S~Sm~~~------~f~~~k~~~~~~i~~l~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i 69 (179) T 1mjn_A 1 GNVDLVFLFDGSMSLQPD------EFQKILDFMKDVMKKCSN-----TSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALL 69 (179) T ss_dssp CCEEEEEEEECBTTCCHH------HHHHHHHHHHHHHHHTTT-----SSEEEEEEEESSSEEEEECHHHHHHHCCHHHHH T ss_pred CCEEEEEEEECCCCCCHH------HHHHHHHHHHHHHHHHCC-----CCCEEEEEEEEECCEECCCCCCCCCHHHHHHHH T ss_conf 976999999688999879------999999999999997375-----776699999860211113521204699999987 Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 60133687744420367677643222333310257886564279998068778888806899999999978987999992 Q gi|254780934|r 248 KYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGI 327 (374) Q Consensus 248 ~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~ 327 (374) +.+...+++|+++.++.++...+...... ..++.+|++||+|||+++.+... .+..++.++.+++ T Consensus 70 ~~~~~~~g~~~~~~al~~a~~~~~~~~~~------~r~~~~k~ivllTDG~~~~~~~~---------~~~~~~~~~~~~i 134 (179) T 1mjn_A 70 KHVKHMLLLTNTFGAINYVATEVFREELG------ARPDATKVLIIITDGEATDSGNI---------DAAKDIIRYIIGI 134 (179) T ss_dssp TTCCCCCBCCCHHHHHHHHHHHTSSGGGT------CCTTSEEEEEEEESSCCSSCSCC---------GGGTTSEEEEEEE T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHC------CCCCCCEEEEEECCCCCCCCHHH---------HHHHCCEEEEEEE T ss_conf 51255789832788999999998545306------89987148999807998860689---------9982986889999 Q ss_pred CCC----CCHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHHH Q ss_conf 482----227889982389---81798389899999999999842 Q gi|254780934|r 328 RVI----RSHEFLRACASP---NSFYLVENPHSMYDAFSHIGKDI 365 (374) Q Consensus 328 ~~~----~~~~~L~~~As~---~~~~~a~~~~~L~~~f~~I~~~i 365 (374) +.. .+.+.|+.+|+. .++|.+++.++|.+.+++|.++| T Consensus 135 ~~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~~~~~~l~~~I 179 (179) T 1mjn_A 135 GKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLCTELQKKI 179 (179) T ss_dssp SGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGGSCCHHHHHHHHC T ss_pred EECCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHC T ss_conf 946886017999999857998633998799999999999997249 No 18 >2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Probab=99.64 E-value=9.6e-18 Score=122.97 Aligned_cols=169 Identities=15% Similarity=0.185 Sum_probs=118.7 Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEE-EEECCCCHHHHHHHHH Q ss_conf 872499996578645113135313799999988763221002366567348999982685056-1020478689999986 Q gi|254780934|r 170 ARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEE-FFLLEWGVSHLQRKIK 248 (374) Q Consensus 170 ~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~i~ 248 (374) .+.+|+||+|.||||... |++.+|.++..++...... ..+++++.|...... ..+++.+....+..++ T Consensus 4 ~~~~iv~vlD~SGSM~~~------~~~~~k~~~~~~l~~~~~~-----~d~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 72 (189) T 2x31_A 4 SDRVLIFAVDASGSAAVA------RLSEAKGAVELLLGRAYAA-----RDHVSLITFRGTAAQVLLQPSRSLTQTKRQLQ 72 (189) T ss_dssp SCCEEEEEEECCTTSCC--------CHHHHHHHHHHHHHSCTT-----TSCCCEEEESBSCCCBCTTTCSCHHHHHHHHH T ss_pred CCCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHCCC-----CCEEEEEEEEECCCCCCCCCCCCHHHHHHHHH T ss_conf 774699999817578926------9999999999999972568-----96799999993243135887468999999985 Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHH--------HHHHHHCCC Q ss_conf 013368774442036767764322233331025788656427999806877888880689999--------999997898 Q gi|254780934|r 249 YLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYY--------CNEAKKRGA 320 (374) Q Consensus 249 ~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~--------~~~~k~~gi 320 (374) .+.+.| +|+...++..++..+... ..+...++|||+|||.+|.+......... +...+..|| T Consensus 73 ~~~~~G-gT~~~~al~~a~~~~~~~---------~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 142 (189) T 2x31_A 73 GLPGGG-GTPLASGMEMAMVTAKQA---------RSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGM 142 (189) T ss_dssp HCCCCB-CCCCHHHHHHHHHHHHTC---------TTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGS T ss_pred HCCCCC-CCCHHHHHHHHHHHHHHH---------CCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 344579-861789999999999972---------2458877799964798776878604589999999999999872698 Q ss_pred EEEEEEECCCCCHHHHHHHC--CCCCEEEECCH--HHHHHHHHH Q ss_conf 79999924822278899823--89817983898--999999999 Q gi|254780934|r 321 IVYAIGIRVIRSHEFLRACA--SPNSFYLVENP--HSMYDAFSH 360 (374) Q Consensus 321 ~IytIg~~~~~~~~~L~~~A--s~~~~~~a~~~--~~L~~~f~~ 360 (374) .+++|+++.. ....|+++| ++|+||..++. ++|.+++.+ T Consensus 143 ~~~~i~~g~~-~~~~l~~iA~~~gG~y~~~~~~~~~~l~~~~~~ 185 (189) T 2x31_A 143 PAVIIDTAMR-PNPALVDLARTMDAHYIALPRATAHKMADVLGA 185 (189) T ss_dssp CCTHHHHHHS-SCSSSCSTTTEEEESSTTTHHHHHHHHHHHHHH T ss_pred CEEEEECCCC-CHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH T ss_conf 3799847978-769999999761999997599999999999999 No 19 >2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} Probab=99.62 E-value=2.2e-13 Score=97.04 Aligned_cols=168 Identities=14% Similarity=0.124 Sum_probs=113.0 Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEE-EECCCCHHHHHHHHH Q ss_conf 8724999965786451131353137999999887632210023665673489999826850561-020478689999986 Q gi|254780934|r 170 ARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEF-FLLEWGVSHLQRKIK 248 (374) Q Consensus 170 ~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~~~i~ 248 (374) .|+|++||+|.||||.. +++.+|+++..+++.+.... ..+|++++.|.+..... .+++.+...++..++ T Consensus 2 ~pvDl~fviD~SgSM~~-------~i~~~k~~~~~l~~~l~~~~---~~~r~g~v~f~d~~~~~~~~~t~~~~~~~~~i~ 71 (212) T 2iue_A 2 NSVDLYFLMGLSGSAQG-------HLSNVQTLGSDLLKALNEIS---RSGRIGFGSIVNMTFQHILKLTADSSQFQRELR 71 (212) T ss_dssp CCEEEEEEEECCGGGTT-------THHHHHHHHHHHHHHHHHHC---SCEEEEEEEESSSCEEEEEEEESCHHHHHHHHH T ss_pred CCEEEEEEEECCCCHHH-------HHHHHHHHHHHHHHHHHHCC---CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 84689999988805267-------99999999999999997269---870899997056434334655763999999986 Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCC----------------------- Q ss_conf 013368774442036767764322233331025788656427999806877888880----------------------- Q gi|254780934|r 249 YLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKED----------------------- 305 (374) Q Consensus 249 ~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~----------------------- 305 (374) .+.+.| |++.++++..|.......... ...++..|++||+|||.++..... T Consensus 72 ~~~~~g-g~d~~e~~~~al~~a~~~~~~-----~~~~~~~~~ivl~tD~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 145 (212) T 2iue_A 72 KQLVSG-KLATPKGQLDAVVQVAICLGE-----IGWRNGTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSR 145 (212) T ss_dssp TCCCCC-CSSSSBCHHHHHHHHHHCHHH-----HTCCSSEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSSBBGGG T ss_pred HHHCCC-CCCCCHHHHHHHHHHHHHHHH-----CCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCC T ss_conf 302148-988850699999999987664-----37777735999996898655663024445311587157525653567 Q ss_pred -----HHHHHHHHHHHHCCCEEE-EEEECCCCCHHHHHHHC--CCCCEEEE--CCHHHHHH Q ss_conf -----689999999997898799-99924822278899823--89817983--89899999 Q gi|254780934|r 306 -----QQSLYYCNEAKKRGAIVY-AIGIRVIRSHEFLRACA--SPNSFYLV--ENPHSMYD 356 (374) Q Consensus 306 -----~~~~~~~~~~k~~gi~Iy-tIg~~~~~~~~~L~~~A--s~~~~~~a--~~~~~L~~ 356 (374) ......+..+++.+|..+ .+. ....+.++..+ .+|.++.. .+...+.+ T Consensus 146 ~~~d~~~~~~~~~~~~~~~i~~i~~~~---~~~~~~~~~l~~~~~g~~v~~ls~dssni~~ 203 (212) T 2iue_A 146 GEPDYQSVVQLASKLAENNIQPIFVVP---SRMVKTYEKLTTFIPKLTIGELSDDSSNVAQ 203 (212) T ss_dssp GSSCCCCHHHHHHHHHHHTCEEEEEEE---HHHHHHHHHHHHHSTTCEEEEESSCCHHHHH T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEEC---CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 776777799999999863975899974---5327899999997387412666554387999 No 20 >3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Probab=99.59 E-value=2.1e-15 Score=109.07 Aligned_cols=183 Identities=20% Similarity=0.258 Sum_probs=134.6 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCC--CHHHHHHH Q ss_conf 7872499996578645113135313799999988763221002366567348999982685056102047--86899999 Q gi|254780934|r 169 DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEW--GVSHLQRK 246 (374) Q Consensus 169 ~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~~~ 246 (374) ...+||+||||.|+|++.. -.+.+++.++.++..+.. ...+++++.|+........+.. ........ T Consensus 128 ~~~~DivfvlDgS~Si~~~------df~~~k~f~~~v~~~f~~-----~~~qvg~vqys~~~~~~f~l~d~~~~~~~~~~ 196 (1095) T 3k6s_A 128 RQEQDIVFLIDGSGSISSR------NFATMMNFVRAVISQFQR-----PSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSL 196 (1095) T ss_dssp CCCEEEEEEEECCTTSCSH------HHHHHHHHHHHHHHSSCS-----SSEEEEEEEESSSEEEEECSHHHHSCSCGGGG T ss_pred CCCCCEEEEEECCCCCCCC------CHHHHHHHHHHHHHHCCC-----CCEEEEEEEECCCEEEEEEHHHCCCCCCHHHH T ss_conf 6674379999089872743------068999999999862466-----75499999613732588870343333026787 Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE Q ss_conf 86013368774442036767764322233331025788656427999806877888880689999999997898799999 Q gi|254780934|r 247 IKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIG 326 (374) Q Consensus 247 i~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg 326 (374) ++.+...++.|++..|+..+...+..... ...++..|++|++|||+-+.. ..........++..||.+|+|| T Consensus 197 v~~i~~~~g~T~Ta~ai~~~~~~~f~~~~------g~r~~a~kv~IviTDG~s~~d--~~~l~~~i~~~~~~gI~~~aIG 268 (1095) T 3k6s_A 197 LASVHQLQGFTYTATAIQNVVHRLFHASY------GARRDAAKILIVITDGKKEGD--SLDYKDVIPMADAAGIIRYAIG 268 (1095) T ss_dssp TTTCCCCCSCBCHHHHHHHHHTTTTSTTT------TCCSSSEEEEEEEESSCCBSC--SSCHHHHHHHHHHHCEEECCEE T ss_pred HHHEEECCCCCCHHHHHHHHHHHHHHHHH------CCCCCCCEEEEEEECCCCCCC--CCCHHHHHHHHHHCCCEEEEEE T ss_conf 54146136743078889999997631642------688898417999926864567--3203444445864892899997 Q ss_pred ECCC----CCHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHHHHEEEE Q ss_conf 2482----227889982389---8179838989999999999984200166 Q gi|254780934|r 327 IRVI----RSHEFLRACASP---NSFYLVENPHSMYDAFSHIGKDIVTKRI 370 (374) Q Consensus 327 ~~~~----~~~~~L~~~As~---~~~~~a~~~~~L~~~f~~I~~~i~~~~~ 370 (374) ++.. .....|+.+|+. .++|.+++..+|.++.+.+.+.|...+. T Consensus 269 vg~~~~~~~~~~eL~~iAs~p~~~~~f~v~~~~aL~~i~~~L~~~i~~ieg 319 (1095) T 3k6s_A 269 VGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFAIEG 319 (1095) T ss_dssp BSSGGGSTTSSHHHHTTSCSSTTTSCCCBSCSGGGGSSTTTHHHHHHTCCC T ss_pred CCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCEEEEC T ss_conf 254325643353542120588740389935557766777764165256454 No 21 >2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing, platelet integrin ALPHAIIBBETA3, polymorphism, glycoprotein, cell adhesion, calcium; HET: NAG MAN; 2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* Probab=99.36 E-value=8.7e-10 Score=75.57 Aligned_cols=189 Identities=14% Similarity=0.138 Sum_probs=125.8 Q ss_pred EECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCE------------ Q ss_conf 31037787249999657864511313531379999998876322100236656734899998268505------------ Q gi|254780934|r 164 VNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIE------------ 231 (374) Q Consensus 164 ~~~~~~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 231 (374) .....+.|+|++|++|.||||... |+.+|..+..+.+.+.... ..+|+++..|.++.. T Consensus 104 v~~~~~yPvDL~fLmD~TgSM~dd-------I~~lk~~~~~l~~~l~~~t---~~~rlGfgsf~Dk~~~p~~~~~~~~~l 173 (461) T 2vdr_B 104 VRQVEDYPVDIYYLMDLSYSMKDD-------LWSIQNLGTKLATQMRKLT---SNLRIGFGAFVDKPVSPYMYISPPEAL 173 (461) T ss_dssp EECCSCCCEEEEEEEECSGGGGGG-------HHHHHHHHHHHHHHHHHHC---TTEEEEEEEECCCSSTTTSCCCSTHHH T ss_pred EECCCCCCCCEEEEEECCCCHHHH-------HHHHHHHHHHHHHHHHHHC---CCCEEEEEEEEEECCCCCCCCCCHHHH T ss_conf 751677874479999477466999-------9999999999999998528---884799999897347764444666550 Q ss_pred ------------------EEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH-HHHHHHHCCCCCCCCCCEEEE Q ss_conf ------------------6102047868999998601336877444203676776432-223333102578865642799 Q gi|254780934|r 232 ------------------EFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIF-DMQGMRQHCNTEDANYKKIIV 292 (374) Q Consensus 232 ------------------~~~~~t~~~~~~~~~i~~l~~~g~~T~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~k~ii 292 (374) ...++|.+...+...++.+.+.| |-+..++...|..+.. -.....| ..+.+|++| T Consensus 174 ~~Pc~~~~~~c~~~f~~~~~l~lT~d~~~F~~~V~~~~~sG-ggD~PE~~~dAL~qa~vc~~~igW-----R~~a~rilv 247 (461) T 2vdr_B 174 ENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSR-NRDAPEGGFDAIMQATVCDEKIGW-----RNDASHLLV 247 (461) T ss_dssp HCTTGGGTSCCCCCCSEEEEEEEESCHHHHHHHHHTCCCCC-CSBSSBCHHHHHHHHHHCHHHHTC-----CTTSEEEEE T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCEECCC-CCCCCCCHHHHHHHHHHHHHHCCC-----CCCCEEEEE T ss_conf 48664678776787330452468878999999875036547-986776689999999986310787-----868759999 Q ss_pred EEECCCCCCC-----------------------------CCCHHHHHHHHHHHHCCC-EEEEEEECCCCCHHHHHHHCC- Q ss_conf 9806877888-----------------------------880689999999997898-799999248222788998238- Q gi|254780934|r 293 FMTDGENLST-----------------------------KEDQQSLYYCNEAKKRGA-IVYAIGIRVIRSHEFLRACAS- 341 (374) Q Consensus 293 llTDG~~~~~-----------------------------~~~~~~~~~~~~~k~~gi-~IytIg~~~~~~~~~L~~~As- 341 (374) |+||...+.. .++....++...+++++| .||+|.-. ..++.+..+. T Consensus 248 liTDA~~H~agDgkl~giv~pnDg~Chl~~~~~y~~s~~~DYPSv~ql~~~l~e~~i~pIFAVt~~---~~~~Y~~L~~~ 324 (461) T 2vdr_B 248 FTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTEN---VVNLYQNYSEL 324 (461) T ss_dssp EEESSCBCCTTGGGGGTCCSCCCCCCCCCTTSBCTTTTTSCCCCHHHHHHHHHHTTCEEEEEEEGG---GHHHHHHHHTT T ss_pred EECCCCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCC---CHHHHHHHHHH T ss_conf 989788433687544104438876315379887665555778999999999986496799996553---22268999974 Q ss_pred -CCCE--EEECCHHHHHHHHHHHHHHHHEEEEE Q ss_conf -9817--98389899999999999842001666 Q gi|254780934|r 342 -PNSF--YLVENPHSMYDAFSHIGKDIVTKRIW 371 (374) Q Consensus 342 -~~~~--~~a~~~~~L~~~f~~I~~~i~~~~~~ 371 (374) ++.. -..++...+.+..++--++|.+.-.+ T Consensus 325 i~~s~vg~L~~dSsNiv~LI~~aY~~i~s~v~l 357 (461) T 2vdr_B 325 IPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVEL 357 (461) T ss_dssp STTCEEEEESSCCHHHHHHHHHHHHTCCEEEEE T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHCEEEE T ss_conf 687536774477376999999999876307999 No 22 >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, alternative splicing, cell adhesion, disease mutation, glycoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Probab=99.21 E-value=2.7e-09 Score=72.64 Aligned_cols=186 Identities=15% Similarity=0.148 Sum_probs=116.9 Q ss_pred EECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCE------------ Q ss_conf 31037787249999657864511313531379999998876322100236656734899998268505------------ Q gi|254780934|r 164 VNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIE------------ 231 (374) Q Consensus 164 ~~~~~~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 231 (374) .+...+-|+|+++++|.|+||... ++.+|.....+.+.+.... ..+|+|+..|.+++. T Consensus 104 ~~~~~~~pvdly~lmD~s~sm~dd-------~~~l~~l~~~l~~~~~~~t---~~~~~gfgsfvdk~~~p~~~~~~~~~~ 173 (690) T 3fcs_B 104 VRQVEDYPVDIYYLMDLSYSMKDD-------LWSIQNLGTKLATQMRKLT---SNLRIGFGAFVDKPVSPYMYISPPEAL 173 (690) T ss_dssp EECCBTCCEEEEEEEECSGGGHHH-------HHHTTTTTHHHHHHHHHHC---SCEEEEEEEECCCSSTTTSCCCSTTTT T ss_pred EECCCCCCCCEEEEEECCCCHHHH-------HHHHHHHHHHHHHHHHHHC---CCCEEEEEEECCCCCCCCCCCCCHHHC T ss_conf 733788984379998367527889-------9999999999999998628---673687777204656775667676540 Q ss_pred ------------------EEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH-HHHHHHCCCCCCCCCCEEEE Q ss_conf ------------------61020478689999986013368774442036767764322-23333102578865642799 Q gi|254780934|r 232 ------------------EFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFD-MQGMRQHCNTEDANYKKIIV 292 (374) Q Consensus 232 ------------------~~~~~t~~~~~~~~~i~~l~~~g~~T~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~k~ii 292 (374) ...++|.+...+...|+.....| +-+..+|---|..+..- .....| ..+.+|+|| T Consensus 174 ~~pc~~~~~~c~~~~~~~~~~~lt~~~~~f~~~v~~~~~s~-n~d~pe~~~dal~q~~vc~~~igw-----r~~~~~~~v 247 (690) T 3fcs_B 174 ENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSR-NRDAPEGGFDAIMQATVCDEKIGW-----RNDASHLLV 247 (690) T ss_dssp TCTTSSSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCCCCC-CSSSSBCHHHHHHHHHHCHHHHTC-----CSSSEEEEE T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHEECCC-CCCCCCHHHHHHHHHHHCCCCCCC-----CCCCEEEEE T ss_conf 48775778876788330465456667899999875255116-877875046678776523122356-----789769999 Q ss_pred EEECCCCCC--------------C---------------CCCHHHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHCCC Q ss_conf 980687788--------------8---------------8806899999999978987-999992482227889982389 Q gi|254780934|r 293 FMTDGENLS--------------T---------------KEDQQSLYYCNEAKKRGAI-VYAIGIRVIRSHEFLRACASP 342 (374) Q Consensus 293 llTDG~~~~--------------~---------------~~~~~~~~~~~~~k~~gi~-IytIg~~~~~~~~~L~~~As~ 342 (374) |.||...+. + .++....++...+++++|. ||+|.-......+-|...-.+ T Consensus 248 ~~tD~~~H~agDg~l~gi~~pnd~~chl~~~~~y~~~~~~dyPs~~q~~~~l~~~~i~~ifavt~~~~~~y~~l~~~~~~ 327 (690) T 3fcs_B 248 FTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIPG 327 (690) T ss_dssp EEESSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEEEEEGGGHHHHHHHHHHSTT T ss_pred EEECCCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCC T ss_conf 98067311256654235631677611407988525567677899999999998729679999766540068999975487 Q ss_pred CCEE-EECCHHHHH----HHHHHHHHHH Q ss_conf 8179-838989999----9999999842 Q gi|254780934|r 343 NSFY-LVENPHSMY----DAFSHIGKDI 365 (374) Q Consensus 343 ~~~~-~a~~~~~L~----~~f~~I~~~i 365 (374) +..- ...+...+. ++|++|...+ T Consensus 328 ~~~~~l~~dssnv~~li~~~y~~~~s~v 355 (690) T 3fcs_B 328 TTVGVLSMDSSNVLQLIVDAYGKIRSKV 355 (690) T ss_dssp CEEEEECTTCTTHHHHHHHHHHHHTTCE T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHCEE T ss_conf 5268705786159999999998752646 No 23 >1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* Probab=99.03 E-value=2.9e-08 Score=66.49 Aligned_cols=147 Identities=15% Similarity=0.028 Sum_probs=102.9 Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCC--------------EEEEEC Q ss_conf 724999965786451131353137999999887632210023665673489999826850--------------561020 Q gi|254780934|r 171 RLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKI--------------EEFFLL 236 (374) Q Consensus 171 ~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 236 (374) .-.++||||.|+||....++...+++.+++++..++...-... ...++|++-|++.. ....++ T Consensus 7 Keaiv~~iDvs~sM~~~~~~~~s~~~~a~~~~~~~~~~ki~~~---~~D~vglvlfgt~~t~N~l~~~~~~~~i~v~~~l 83 (565) T 1jey_B 7 KAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAE---NKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHL 83 (565) T ss_dssp CEEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTT---CCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEE T ss_pred CCEEEEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---CCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECC T ss_conf 8519999989867767688999979999999999999873389---9987999998057888755544577755997458 Q ss_pred CC-CHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH Q ss_conf 47-86899999860133687744420367677643222333310257886564279998068778888806899999999 Q gi|254780934|r 237 EW-GVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEA 315 (374) Q Consensus 237 t~-~~~~~~~~i~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~ 315 (374) .. +...++...+.+.+.+..++...++..+.+++..... .....++.|||+|||.++... .....+.+.+ T Consensus 84 ~~~~~~~l~~l~~~~~~~~~~~d~~~aL~va~~~l~~~~~-------~~k~~~~~Ivl~Td~~~p~~~--~~~~~i~~~l 154 (565) T 1jey_B 84 MLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETI-------GKKFEKRHIEIFTDLSSRFSK--SQLDIIIHSL 154 (565) T ss_dssp ECCCHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSS-------SSCCSEEEEEEECCCCSCCCC--TTHHHHHHHH T ss_pred CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH-------CCCCCCEEEEEEECCCCCCCH--HHHHHHHHHH T ss_conf 8999999999986536887787879999999999998750-------255562489999279988687--8999999999 Q ss_pred HHCCCEEEEEEECC Q ss_conf 97898799999248 Q gi|254780934|r 316 KKRGAIVYAIGIRV 329 (374) Q Consensus 316 k~~gi~IytIg~~~ 329 (374) ++.+|.+..|++.. T Consensus 155 ~~~~i~L~vi~~~~ 168 (565) T 1jey_B 155 KKCDISLQFFLPFS 168 (565) T ss_dssp HHTTEEEEEEESSC T ss_pred HHCCCEEEEEECCC T ss_conf 86596699970366 No 24 >2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans} Probab=98.94 E-value=3.5e-08 Score=65.99 Aligned_cols=136 Identities=13% Similarity=0.119 Sum_probs=77.5 Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-HHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCCCHHHHHHHHH Q ss_conf 8724999965786451131353137999999887-632210023665673489999826850561020478689999986 Q gi|254780934|r 170 ARLDMMIVLDVSRSMESFFDSSITKIDMAIKSIN-AMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQRKIK 248 (374) Q Consensus 170 ~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~i~ 248 (374) .+-.+++++|.||||.+...+....+.....++. .++. ... ..++.++.|++..... +++.+. .+...++ T Consensus 361 ~~~r~lv~iDvSGSM~~~~~~~~~~~~~~~~a~lla~~~-~r~------~~~~~vv~Fs~~~~~v-~l~~~~-sl~~~~~ 431 (535) T 2nvo_A 361 ANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIA-LRT------EPDALTMGFAEQFRPL-GITPRD-TLESAMQ 431 (535) T ss_dssp CCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHH-HHH------SSEEEEEEEBSSEEEC-CCCTTC-CHHHHHH T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HCC------CCCEEEEEECCCEEEE-CCCCCC-CHHHHHH T ss_conf 897379999765556664237875377999999999998-075------8980798427965871-788886-4999999 Q ss_pred HCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCH-HHHHHHHHHHHCCCEEEEEE Q ss_conf 013-3687744420367677643222333310257886564279998068778888806-89999999997898799999 Q gi|254780934|r 249 YLS-KFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQ-QSLYYCNEAKKRGAIVYAIG 326 (374) Q Consensus 249 ~l~-~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~-~~~~~~~~~k~~gi~IytIg 326 (374) .+. ..+++|+.+.++.|+.+.- ...+.+|++|||+.|.+.... .......+....+.+++.|+ T Consensus 432 ~~~~~~~ggT~~~~~l~~a~~~~---------------~~~D~iIllTD~e~~~g~~~p~~al~~yr~~~~~~~klv~v~ 496 (535) T 2nvo_A 432 KAQSVSFGGTDCAQPILWAAQER---------------LDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLIVVG 496 (535) T ss_dssp HTCCSSBCCCCTTHHHHHHHHTT---------------CCCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCCEEEEEE T ss_pred HHHHCCCCCCHHHHHHHHHHHCC---------------CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEE T ss_conf 98615789966999999998565---------------458989998089977899999999999999718997189998 Q ss_pred ECC Q ss_conf 248 Q gi|254780934|r 327 IRV 329 (374) Q Consensus 327 ~~~ 329 (374) +.. T Consensus 497 l~~ 499 (535) T 2nvo_A 497 LTA 499 (535) T ss_dssp TTC T ss_pred ECC T ss_conf 037 No 25 >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Probab=98.65 E-value=3e-07 Score=60.47 Aligned_cols=186 Identities=15% Similarity=0.184 Sum_probs=110.5 Q ss_pred EECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCE------------ Q ss_conf 31037787249999657864511313531379999998876322100236656734899998268505------------ Q gi|254780934|r 164 VNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIE------------ 231 (374) Q Consensus 164 ~~~~~~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 231 (374) .+...+-|+|+++++|.|+||... ++.+|.-...+...+... ...+|+|+-.|.+++. T Consensus 97 ~~~~~~~pvdly~lmd~s~sm~~d-------~~~~~~~~~~l~~~~~~~---t~~~~~g~g~fvdk~~~p~~~~~p~~~~ 166 (687) T 3k6s_B 97 FRRAKGYPIDLYYLMDLSYSMLDD-------LRNVKKLGGDLLRALNEI---TESGRIGFGSFVDKTVLPFVNTHPDKLR 166 (687) T ss_dssp ECCCCCCCCEEEEEEECSSTTHHH-------HHTTTTCCTTHHHHHHSS---CCSCEEEEEEECCCSSTTSSCCSSTTTT T ss_pred EECCCCCCCEEEEEEECCCCHHHH-------HHHHHHHHHHHHHHHHHH---CCCCEEECCCCCCCCCCCCCCCCHHHHC T ss_conf 752788982089998367417889-------999999999999999863---8562760010123565875678877702 Q ss_pred -----------------EEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE Q ss_conf -----------------610204786899999860133687744420367677643222333310257886564279998 Q gi|254780934|r 232 -----------------EFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFM 294 (374) Q Consensus 232 -----------------~~~~~t~~~~~~~~~i~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iill 294 (374) ...++|.+...+...++.....| +-+..+|---|..+..-- .....+.+ .+++|||. T Consensus 167 ~pc~~~~~~c~~~~~~~~~~~lt~~~~~f~~~~~~~~~~~-n~d~pe~~~da~~q~~~c---~~~igwr~--~~~~~~~~ 240 (687) T 3k6s_B 167 NPCPNKEKECQPPFAFRHVLKLTNNSNQFQTEVGKQLISG-NLDAPEGGLDAMMQVAAC---PEEIGWRN--VTRLLVFA 240 (687) T ss_dssp CCCCSCCCCCCCCCSCEEEEEEESCSHHHHHHHHTSCCCC-CSSSSCCHHHHHHHHTTC---HHHHCCCS--SCCEEEEE T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHEEEEC-CCCCCCCHHHHHHHHHHC---CCCCCCCC--CEEEEEEE T ss_conf 8887888776788341542256677899999875167035-776865016688887750---22236457--54899998 Q ss_pred ECCCCCCCC----------------------------CCHHHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHCCCCCE Q ss_conf 068778888----------------------------806899999999978987-999992482227889982389817 Q gi|254780934|r 295 TDGENLSTK----------------------------EDQQSLYYCNEAKKRGAI-VYAIGIRVIRSHEFLRACASPNSF 345 (374) Q Consensus 295 TDG~~~~~~----------------------------~~~~~~~~~~~~k~~gi~-IytIg~~~~~~~~~L~~~As~~~~ 345 (374) ||...+... ++...-++...+++++|. ||+|.=....-.+.|...-.++.+ T Consensus 241 td~~~h~agdg~l~gi~~pnd~~chl~~~~y~~~~~~dyps~~~~~~~~~~~~i~~ifavt~~~~~~y~~l~~~~~~~~~ 320 (687) T 3k6s_B 241 TDDGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEKLTEIIPKSAV 320 (687) T ss_dssp CSSCCCCTTGGGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCBCCEEECGGGHHHHHHHHHHSSSCCE T ss_pred CCCCCCCCCCCCCCEECCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCEE T ss_conf 16874426764231040478873170488303566667789899999998649259999766444368999975577504 Q ss_pred E-EECCHH---H-HHHHHHHHHHHH Q ss_conf 9-838989---9-999999999842 Q gi|254780934|r 346 Y-LVENPH---S-MYDAFSHIGKDI 365 (374) Q Consensus 346 ~-~a~~~~---~-L~~~f~~I~~~i 365 (374) - .+.+.. + +.++|++|...+ T Consensus 321 ~~l~~ds~ni~~li~~~y~~i~s~v 345 (687) T 3k6s_B 321 GELSEDSSNVVQLIKNAYNKLSSRV 345 (687) T ss_dssp EECCTTCCSCGGGTTTHHHHHSSCC T ss_pred EEECCCCHHHHHHHHHHHHHHHCEE T ss_conf 7614664779999999998651379 No 26 >1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Probab=98.59 E-value=4e-06 Score=53.76 Aligned_cols=134 Identities=16% Similarity=0.109 Sum_probs=75.1 Q ss_pred CCEEEEEEECCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECC-CCHHHHHHHH Q ss_conf 8724999965786451131353-1379999998876322100236656734899998268505610204-7868999998 Q gi|254780934|r 170 ARLDMMIVLDVSRSMESFFDSS-ITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLE-WGVSHLQRKI 247 (374) Q Consensus 170 ~~~di~~VlD~SgSM~~~~~~~-~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-~~~~~~~~~i 247 (374) .+..+++++|.||||.....++ ....+.+.-....+.. .. .. ..++.|++...+..... .........+ T Consensus 367 ~~~r~liavDvSGSM~~~~~g~~~~~~~~aa~la~~~~~-~~------~~--~~vv~Fs~~~~~l~~~~~~~l~~~~~~~ 437 (538) T 1yvr_A 367 TGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVAR-TE------KD--SHMVAFSDEMLPCPITVNMLLHEVVEKM 437 (538) T ss_dssp CCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHH-HC------SS--EEEEEESSSEECCSCCTTSCHHHHHHHH T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HC------CC--CEEEEECCCEEECCCCHHHHHHHHHHHH T ss_conf 786389999764554374448975799999999999998-57------99--8799976935872777101499999998 Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHH-HHHHHHHHHHCCCEEEEEE Q ss_conf 601336877444203676776432223333102578865642799980687788888068-9999999997898799999 Q gi|254780934|r 248 KYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQ-SLYYCNEAKKRGAIVYAIG 326 (374) Q Consensus 248 ~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~-~~~~~~~~k~~gi~IytIg 326 (374) ..+ .+++|+.+.++.|+.+.- ....++|++|||+.|.+..... ......+-.+.+.+++.|+ T Consensus 438 ~~~--~~ggT~~~~~i~~a~~~~---------------~~~D~~IvlTD~e~~~g~~~p~~al~~Yr~k~~~~ak~v~v~ 500 (538) T 1yvr_A 438 SDI--TMGSTDCALPMLWAQKTN---------------TAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCA 500 (538) T ss_dssp TTC--CCSCCCTTHHHHHHHHTT---------------CCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEE T ss_pred HCC--CCCCCCHHHHHHHHHHCC---------------CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEE T ss_conf 436--789861899999999615---------------568989998179977898899999999999848997599998 Q ss_pred ECC Q ss_conf 248 Q gi|254780934|r 327 IRV 329 (374) Q Consensus 327 ~~~ 329 (374) +.. T Consensus 501 l~~ 503 (538) T 1yvr_A 501 MTS 503 (538) T ss_dssp CSS T ss_pred CCC T ss_conf 568 No 27 >1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* Probab=97.54 E-value=0.0033 Score=36.39 Aligned_cols=147 Identities=13% Similarity=0.144 Sum_probs=78.6 Q ss_pred EEEEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCE----------EEEECCCCH Q ss_conf 249999657864511313-531379999998876322100236656734899998268505----------610204786 Q gi|254780934|r 172 LDMMIVLDVSRSMESFFD-SSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIE----------EFFLLEWGV 240 (374) Q Consensus 172 ~di~~VlD~SgSM~~~~~-~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~t~~~ 240 (374) =.|+|++|.|-||-...+ .....++.+...+..++...--. .....+|++-|++... ...++..-. T Consensus 36 e~iiflID~s~sM~~~~~~~~~s~~~~al~~i~~l~~~kIi~---~~kD~vgvvl~gt~~t~n~~~~~ni~v~~~l~~p~ 112 (609) T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIIS---SDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPG 112 (609) T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHT---TCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCC T ss_pred EEEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC---CCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCC T ss_conf 589999989888868788888785999999999999844767---99984999997578988878988569960488889 Q ss_pred HHHHHHHHHCC------------CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCH-- Q ss_conf 89999986013------------3687744420367677643222333310257886564279998068778888806-- Q gi|254780934|r 241 SHLQRKIKYLS------------KFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQ-- 306 (374) Q Consensus 241 ~~~~~~i~~l~------------~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~-- 306 (374) ......+..+. ..+....+..++..+.+++... ......|.|+|+||+.+-...+.. T Consensus 113 ~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~l~~aL~~~~~~f~~~---------~~k~~~krI~lfTd~d~P~~~d~~~~ 183 (609) T 1jey_A 113 AKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDV---------QFKMSHKRIMLFTNEDNPHGNDSAKA 183 (609) T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTC---------SSCEEEEEEEEEESCSCTTTTCHHHH T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---------CCCCCCCEEEEECCCCCCCCCCHHHH T ss_conf 899999997641234310002567665446999999999999860---------20236757999868998788851779 Q ss_pred -HHHHHHHHHHHCCCEEEEEEECCC Q ss_conf -899999999978987999992482 Q gi|254780934|r 307 -QSLYYCNEAKKRGAIVYAIGIRVI 330 (374) Q Consensus 307 -~~~~~~~~~k~~gi~IytIg~~~~ 330 (374) .....+..+++.||.|..+.++.+ T Consensus 184 ~~~~~~~~dl~~~gI~i~~~~i~~~ 208 (609) T 1jey_A 184 SRARTKAGDLRDTGIFLDLMHLKKP 208 (609) T ss_dssp HHHHHHHHHHHHHTEEEEEEEBCCT T ss_pred HHHHHHHHHHHHHCCEEEEECCCCC T ss_conf 9999999999970905777335788 No 28 >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Probab=97.02 E-value=0.014 Score=32.75 Aligned_cols=175 Identities=12% Similarity=0.099 Sum_probs=106.2 Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEE----------------- Q ss_conf 872499996578645113135313799999988763221002366567348999982685056----------------- Q gi|254780934|r 170 ARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEE----------------- 232 (374) Q Consensus 170 ~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 232 (374) .+--++||+|.|.+.... ..++.+++++...++.+.. ....+++++.|+..+.. T Consensus 159 ~pp~~vfvID~S~~a~~~-----g~l~~~~~ai~~~l~~l~~----~~~~~VglItf~~~V~~~~~~~~~~~~~~~v~~d 229 (751) T 3eh1_A 159 QPAVYLFVLDVSHNAVEA-----GYLTILCQSLLENLDKLPG----DSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSD 229 (751) T ss_dssp CCCEEEEEEECSHHHHHH-----THHHHHHHHHHHHTTTSSC----CTTCEEEEEEESSSEEEEECCTTCSSCEEEEESC T ss_pred CCCEEEEEEECCHHHHHH-----HHHHHHHHHHHHHHHHCCC----CCCEEEEEEEECCEEEEEECCCCCCCCEEEEECC T ss_conf 986899999896578661-----4999999999999974778----8760899999899789984689866532674148 Q ss_pred ------------EEECCCCHHHHHHHHHHCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE Q ss_conf ------------102047868999998601336-----877444203676776432223333102578865642799980 Q gi|254780934|r 233 ------------FFLLEWGVSHLQRKIKYLSKF-----GVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMT 295 (374) Q Consensus 233 ------------~~~~t~~~~~~~~~i~~l~~~-----g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillT 295 (374) ..++...+..+...++.|... ..++..+.++..+...+... --.+++++ T Consensus 230 ~~~~~~p~~~~~l~~l~e~~~~i~~~L~~L~~~~~~~~~~~~~lg~Al~~a~~~l~~~--------------gG~i~~f~ 295 (751) T 3eh1_A 230 IDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPT--------------GGRVSVFQ 295 (751) T ss_dssp TTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTT--------------CEEEEEEE T ss_pred CCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC--------------CCEEEEEE T ss_conf 6312467876468437998999999998545541488776410899999999988732--------------97599995 Q ss_pred CCCCCCCC-----------------------CCHHHHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHC--CCCCEEEEC Q ss_conf 68778888-----------------------806899999999978987999992482-2278899823--898179838 Q gi|254780934|r 296 DGENLSTK-----------------------EDQQSLYYCNEAKKRGAIVYAIGIRVI-RSHEFLRACA--SPNSFYLVE 349 (374) Q Consensus 296 DG~~~~~~-----------------------~~~~~~~~~~~~k~~gi~IytIg~~~~-~~~~~L~~~A--s~~~~~~a~ 349 (374) +|.++.|. ...-...++..+.+.||.|.-+.+..+ .+-..|..++ |+|..|.-+ T Consensus 296 ~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdif~~s~~~~~l~~l~~l~~~TGG~v~~~~ 375 (751) T 3eh1_A 296 TQLPSLGAGLLQSREDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYP 375 (751) T ss_dssp CSCCCSSTTCCCCCCCSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECT T ss_pred CCCCCCCCCCEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEC T ss_conf 67997889832126676667854567651405789999999999769479999945877787998889864786599936 Q ss_pred C------HHHHHHHHHHHHHHHHE Q ss_conf 9------89999999999984200 Q gi|254780934|r 350 N------PHSMYDAFSHIGKDIVT 367 (374) Q Consensus 350 ~------~~~L~~~f~~I~~~i~~ 367 (374) + ..++...++++.+.++. T Consensus 376 ~f~~~~~~~~~~~l~~dl~~~l~~ 399 (751) T 3eh1_A 376 SFHYTHNPSQAEKLQKDLKRYLTR 399 (751) T ss_dssp TCBTTTBHHHHHHHHHHHHHHHHS T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 866433657899999999987554 No 29 >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Probab=96.95 E-value=0.016 Score=32.39 Aligned_cols=165 Identities=10% Similarity=0.107 Sum_probs=94.9 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCCEEEEEEEECCCCEE--------------- Q ss_conf 78724999965786451131353137999999887632210023-66567348999982685056--------------- Q gi|254780934|r 169 DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLI-PDVNNVVQSGLVTFSNKIEE--------------- 232 (374) Q Consensus 169 ~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------------- 232 (374) ..+--++||+|.|.+--.. + -.+.+++++...++.+... .......+++++.|+..+.. T Consensus 175 ~~pp~~vfvIDvS~~av~~---g--~~~~~~~~l~~~l~~lp~~~~~~~~~~~VglItf~~~v~~~~~~~~~~~~~~~v~ 249 (770) T 3efo_B 175 PNPPAFIFMIDVSYSNIKN---G--LVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVV 249 (770) T ss_dssp CCCCEEEEEEECSHHHHHT---T--HHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEE T ss_pred CCCCEEEEEEECCHHHHHH---H--HHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEEECCEEEEECCCCCCCCCEEEEC T ss_conf 9997899999897577664---5--9999999999999856222303677537999981671899557888675403411 Q ss_pred --------------EEECCCCHHHHHHHHHHCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE Q ss_conf --------------10204786899999860133-----68774442036767764322233331025788656427999 Q gi|254780934|r 233 --------------FFLLEWGVSHLQRKIKYLSK-----FGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVF 293 (374) Q Consensus 233 --------------~~~~t~~~~~~~~~i~~l~~-----~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iil 293 (374) ..++...+..+.+.++.|.. ....+..+.++..+...+..... .- .|++ T Consensus 250 ~d~~~~~~p~~~~~l~~l~e~~~~i~~~L~~l~~~~~~~~~~~~~~g~Al~~a~~~l~~~~~-----------gG-kii~ 317 (770) T 3efo_B 250 TDVGEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADC-----------PG-KLFI 317 (770) T ss_dssp CCTTSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTC-----------CE-EEEE T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCC-----------CC-EEEE T ss_conf 58543465564452120899899999998623122057888874389999999999715699-----------96-3999 Q ss_pred EECCCCCC-CC-----------------------CCHHHHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHC--CCCCEE Q ss_conf 80687788-88-----------------------806899999999978987999992482-2278899823--898179 Q gi|254780934|r 294 MTDGENLS-TK-----------------------EDQQSLYYCNEAKKRGAIVYAIGIRVI-RSHEFLRACA--SPNSFY 346 (374) Q Consensus 294 lTDG~~~~-~~-----------------------~~~~~~~~~~~~k~~gi~IytIg~~~~-~~~~~L~~~A--s~~~~~ 346 (374) +++|.++. +. ...-...++..+.+.||.|....+..+ .+-..|..++ |+|..| T Consensus 318 f~s~~P~~~gpg~l~~r~~~~~~~~~~e~~~~~~~~~fY~~La~~~~~~~isvDlf~~s~~~~~l~~l~~l~~~TGG~v~ 397 (770) T 3efo_B 318 FHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLY 397 (770) T ss_dssp EECSCCCSSSTTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEE T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEE T ss_conf 96579988887444465432235772234303621799999999999859469999944876787999999986496699 Q ss_pred EECC Q ss_conf 8389 Q gi|254780934|r 347 LVEN 350 (374) Q Consensus 347 ~a~~ 350 (374) ..++ T Consensus 398 ~~~~ 401 (770) T 3efo_B 398 KYNN 401 (770) T ss_dssp ECTT T ss_pred EECC T ss_conf 9689 No 30 >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Probab=96.46 E-value=0.036 Score=30.25 Aligned_cols=170 Identities=14% Similarity=0.068 Sum_probs=96.4 Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEE---------------- Q ss_conf 7249999657864511313531379999998876322100236656734899998268505610---------------- Q gi|254780934|r 171 RLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFF---------------- 234 (374) Q Consensus 171 ~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 234 (374) +--.+||+|.|.+. ..++.+++++...++.+. +..++|+++|+..+.... T Consensus 121 pp~~vFvID~s~~s--------~~l~~l~~sl~~~l~~lp------~~~~VglITf~~~v~~~~l~~~~~~~~~v~~g~~ 186 (768) T 1m2o_A 121 PPIFFFVVDLTSET--------ENLDSLKESIITSLSLLP------PNALIGLITYGNVVQLHDLSSETIDRCNVFRGDR 186 (768) T ss_dssp CCEEEEEEECCSCH--------HHHHHHHHHHHHHHHTSC------TTCEEEEEEESSEEEECCCSSSSSEEEEEEETTS T ss_pred CCEEEEEEECCCCH--------HHHHHHHHHHHHHHHHCC------CCCEEEEEEECCEEEEEECCCCCCCCEEEECCCC T ss_conf 98899999898656--------789999999999996199------9766999994787999988787766303632765 Q ss_pred -------------------------------------------ECCCCHHHHHHHHHHCCCCCC--------CCCCCCHH Q ss_conf -------------------------------------------204786899999860133687--------74442036 Q gi|254780934|r 235 -------------------------------------------LLEWGVSHLQRKIKYLSKFGV--------STNSTPGL 263 (374) Q Consensus 235 -------------------------------------------~~t~~~~~~~~~i~~l~~~g~--------~T~~~~~~ 263 (374) ++...+..+.+.++.|....+ ....+.++ T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pl~e~~~~i~~lL~~L~~~~~~~~~~~~~~r~~g~Al 266 (768) T 1m2o_A 187 EYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSAL 266 (768) T ss_dssp CCCHHHHHHHHHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHH T ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH T ss_conf 53177776554035666654332346763222355541112466999999999999875303556743245766507899 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCC-------------C---------------HHHHHHHHHH Q ss_conf 76776432223333102578865642799980687788888-------------0---------------6899999999 Q gi|254780934|r 264 KYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKE-------------D---------------QQSLYYCNEA 315 (374) Q Consensus 264 ~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~-------------~---------------~~~~~~~~~~ 315 (374) ..|...+..... +.--.|+++++|.+|.|.- . .-...++..+ T Consensus 267 ~~A~~ll~~~~~----------~~GgrI~~f~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~ 336 (768) T 1m2o_A 267 NIASLLLQGCYK----------NIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRV 336 (768) T ss_dssp HHHHHHHHHHCT----------TSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHC----------CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHH T ss_conf 999999987506----------7887899992799987885341444344456644432101220451789999999999 Q ss_pred HHCCCEEEEEEECCC-CCHHHHHHHC--CCCCEEEECCH--HHHHHHHHHHHHH Q ss_conf 978987999992482-2278899823--89817983898--9999999999984 Q gi|254780934|r 316 KKRGAIVYAIGIRVI-RSHEFLRACA--SPNSFYLVENP--HSMYDAFSHIGKD 364 (374) Q Consensus 316 k~~gi~IytIg~~~~-~~~~~L~~~A--s~~~~~~a~~~--~~L~~~f~~I~~~ 364 (374) .+.||.|....+..+ .+-..|+.++ |+|..|..++. ..+.+.|....+. T Consensus 337 ~~~~isvDiF~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~~ 390 (768) T 1m2o_A 337 AANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAK 390 (768) T ss_dssp HHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHHHHHHTTCB T ss_pred HHCCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH T ss_conf 878979999981487667186653775388509970777520128999999865 No 31 >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Probab=96.19 E-value=0.05 Score=29.35 Aligned_cols=175 Identities=14% Similarity=0.100 Sum_probs=100.0 Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEE---------------- Q ss_conf 8724999965786451131353137999999887632210023665673489999826850561---------------- Q gi|254780934|r 170 ARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEF---------------- 233 (374) Q Consensus 170 ~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 233 (374) .+--++||+|.|.+.-.. + -++.+++++...++.+.. .....+++++.|+..+... T Consensus 302 ~pp~~vFvIDvS~~av~s---g--~l~~~~~~i~~~L~~l~~---~~~~~~VglItfd~~V~~y~l~~~~~~~~~~~~~~ 373 (926) T 1m2v_B 302 PPATYCFLIDVSQSSIKS---G--LLATTINTLLQNLDSIPN---HDERTRISILCVDNAIHYFKIPLDSENNEESADQI 373 (926) T ss_dssp CCCBEEEEEECSHHHHHS---C--HHHHHHHHHHHTTTTSCC---TTSCCEECEEEESSSEEEEECCCC---------CC T ss_pred CCCEEEEEEECCHHHHHH---H--HHHHHHHHHHHHHHHCCC---CCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCC T ss_conf 984899999898888777---8--999999999999974636---78773699999778489983577777643224675 Q ss_pred --------------------EECCCCHHHHHHHHHHCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf --------------------02047868999998601336-----87744420367677643222333310257886564 Q gi|254780934|r 234 --------------------FLLEWGVSHLQRKIKYLSKF-----GVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYK 288 (374) Q Consensus 234 --------------------~~~t~~~~~~~~~i~~l~~~-----g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 288 (374) .++...+..+...++.|... ..++..+.++..+...+... - T Consensus 374 ~~~~~~dl~~~f~p~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~lG~Al~~a~~ll~~~--------------g 439 (926) T 1m2v_B 374 NMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV--------------G 439 (926) T ss_dssp EEEEECCCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTT--------------C T ss_pred CCCCCCCHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC--------------C T ss_conf 20241014540567875434336887999999998425640688887323999999999987547--------------9 Q ss_pred EEEEEEECCCCCCCC--------------CC----------HHHHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHC--C Q ss_conf 279998068778888--------------80----------6899999999978987999992482-2278899823--8 Q gi|254780934|r 289 KIIVFMTDGENLSTK--------------ED----------QQSLYYCNEAKKRGAIVYAIGIRVI-RSHEFLRACA--S 341 (374) Q Consensus 289 k~iillTDG~~~~~~--------------~~----------~~~~~~~~~~k~~gi~IytIg~~~~-~~~~~L~~~A--s 341 (374) -.|+++++|..+.|. .. .-...++..+.+.+|.|..+.+..+ .+-..|..++ | T Consensus 440 GkI~~f~sg~pt~G~G~l~~r~~~~~~~~~~e~~~~~~~~~~fY~~la~~~~~~~isvdlF~~~~~~~dla~l~~l~~~T 519 (926) T 1m2v_B 440 GKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFT 519 (926) T ss_dssp EEEEEEESSCCCSSTTCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTT T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHC T ss_conf 86999947898778863422555333466034454246217999999999997790799998048767738877777634 Q ss_pred CCCEEEEC-----CHHHHHHHHHHHHHHHH Q ss_conf 98179838-----98999999999998420 Q gi|254780934|r 342 PNSFYLVE-----NPHSMYDAFSHIGKDIV 366 (374) Q Consensus 342 ~~~~~~a~-----~~~~L~~~f~~I~~~i~ 366 (374) +|..|.-+ ...+....+.++.+.++ T Consensus 520 GG~i~~y~~f~~~~~~d~~~l~~dl~~~~~ 549 (926) T 1m2v_B 520 AGQTHFYPGFSGKNPNDIVKFSTEFAKHIS 549 (926) T ss_dssp TCCEEEEESCCTTSHHHHHHHHHHHHHHHH T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHH T ss_conf 855998178764436778999999997533 No 32 >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Probab=96.05 E-value=0.059 Score=28.93 Aligned_cols=173 Identities=13% Similarity=0.092 Sum_probs=97.2 Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEE------------- Q ss_conf 7787249999657864511313531379999998876322100236656734899998268505610------------- Q gi|254780934|r 168 TDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFF------------- 234 (374) Q Consensus 168 ~~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 234 (374) ...+--.+||+|.|.+. ...+.+++++...++.+. +..++|+++|+..+.... T Consensus 129 ~~~pp~~vFvID~s~~~--------~~l~~l~~sl~~~l~~lp------~~~~VglITf~~~V~~y~l~~~~~~~~~vf~ 194 (769) T 2nut_A 129 PQMPLIFLYVVDTCMED--------EDLQALKESMQMSLSLLP------PTALVGLITFGRMVQVHELGCEGISKSYVFR 194 (769) T ss_dssp CCCCCEEEEEEECCSCH--------HHHHHHHHHHHHHHTTSC------TTCEEEEEEESSEEEEEESSCCSSCEEEEEE T ss_pred CCCCCEEEEEEECCCCH--------HHHHHHHHHHHHHHHHCC------CCCEEEEEEECCEEEEEECCCCCCCCCEECC T ss_conf 99997899999887665--------789999999999997289------8655999995776999966887766320216 Q ss_pred -----------------------------------------ECCCCHHHHHHHHHHCCCCCC--------CCCCCCHHHH Q ss_conf -----------------------------------------204786899999860133687--------7444203676 Q gi|254780934|r 235 -----------------------------------------LLEWGVSHLQRKIKYLSKFGV--------STNSTPGLKY 265 (374) Q Consensus 235 -----------------------------------------~~t~~~~~~~~~i~~l~~~g~--------~T~~~~~~~~ 265 (374) +.......+.+.++.|....+ ...++.++.. T Consensus 195 g~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~fl~~~~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~ 274 (769) T 2nut_A 195 GTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSI 274 (769) T ss_dssp TTSCCCSHHHHHHHC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHH T ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH T ss_conf 87544678776533765566544456653457886331057689999999999998540566664334775440789999 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCC----------------------------CHHHHHHHHHHHH Q ss_conf 776432223333102578865642799980687788888----------------------------0689999999997 Q gi|254780934|r 266 AYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKE----------------------------DQQSLYYCNEAKK 317 (374) Q Consensus 266 a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~----------------------------~~~~~~~~~~~k~ 317 (374) |...+....+ +.--.|++++.|.+|.|.- ..-...++..+.. T Consensus 275 A~~ll~~~~~----------~~GgrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~di~k~~~~~~~~a~~fY~~la~~~~~ 344 (769) T 2nut_A 275 AVGLLECTFP----------NTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAAT 344 (769) T ss_dssp HHHHHHHHSC----------SSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCC----------CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHH T ss_conf 9999986436----------898789999479997688533143434334664454322011146078999999999997 Q ss_pred CCCEEEEEEECCC-CCHHHHHHHC--CCCCEEEECC--HHHHHHHHHHHHHH Q ss_conf 8987999992482-2278899823--8981798389--89999999999984 Q gi|254780934|r 318 RGAIVYAIGIRVI-RSHEFLRACA--SPNSFYLVEN--PHSMYDAFSHIGKD 364 (374) Q Consensus 318 ~gi~IytIg~~~~-~~~~~L~~~A--s~~~~~~a~~--~~~L~~~f~~I~~~ 364 (374) .||.|....+..+ .+-..|+.++ |+|..|..++ .....+.|..+.+. T Consensus 345 ~~isvDiF~~~~~~~~l~~m~~l~~~TGG~v~~~~~F~~~~~~~~l~~~~~~ 396 (769) T 2nut_A 345 TGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTK 396 (769) T ss_dssp HTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTTCB T ss_pred CCEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHH T ss_conf 7958999971575557075765776168469983798604439999999876 No 33 >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Probab=95.98 E-value=0.064 Score=28.74 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=100.5 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEE--------------- Q ss_conf 78724999965786451131353137999999887632210023665673489999826850561--------------- Q gi|254780934|r 169 DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEF--------------- 233 (374) Q Consensus 169 ~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 233 (374) ..+.-.+||+|.|.+-... .-++.+++++...++.+. ......+++++.|+..+... T Consensus 185 p~pp~~vFvIDvS~~av~~-----g~l~~~~~~i~~~L~~lp---~~~~~~~Vg~Itfd~~v~~~~l~~~~~~~~~~~~~ 256 (810) T 1pcx_A 185 PPPATYCFLIDVSQSSIKS-----GLLATTINTLLQNLDSIP---NHDERTRISILCVDNAIHYFKIPLDSENNEESADQ 256 (810) T ss_dssp CCCCEEEEEEECSHHHHHH-----THHHHHHHHHHHHTTTSC---CTTSCCEEEEEEESSSEEEEECCCGGGC------- T ss_pred CCCCEEEEEEECCHHHHHH-----HHHHHHHHHHHHHHHHCC---CCCCCEEEEEEEECCCEEEEECCCCCCCCCCCCCC T ss_conf 9985899999897788664-----799999999999875143---67876059999958828999656777764333344 Q ss_pred ---------------------EECCCCHHHHHHHHHHCCCCC-----CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf ---------------------020478689999986013368-----774442036767764322233331025788656 Q gi|254780934|r 234 ---------------------FLLEWGVSHLQRKIKYLSKFG-----VSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANY 287 (374) Q Consensus 234 ---------------------~~~t~~~~~~~~~i~~l~~~g-----~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 287 (374) .++...+..+...++.|+... .++..+.++..|...+... T Consensus 257 ~~~~~~~dl~~~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~alG~Al~~a~~ll~~~-------------- 322 (810) T 1pcx_A 257 INMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV-------------- 322 (810) T ss_dssp CEEECCCCTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTT-------------- T ss_pred CCCCCCCCHHHCCCCCCCCCEEEHHHHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHCC-------------- T ss_conf 432444442331467876651206897999999998554531698887322999999999987457-------------- Q ss_pred CEEEEEEECCCCCCCCC------------------------CHHHHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHC-- Q ss_conf 42799980687788888------------------------06899999999978987999992482-2278899823-- Q gi|254780934|r 288 KKIIVFMTDGENLSTKE------------------------DQQSLYYCNEAKKRGAIVYAIGIRVI-RSHEFLRACA-- 340 (374) Q Consensus 288 ~k~iillTDG~~~~~~~------------------------~~~~~~~~~~~k~~gi~IytIg~~~~-~~~~~L~~~A-- 340 (374) --.|++++.|.++.|.. ..-.+.++..+.+.||.|....+..+ .+-..|..++ T Consensus 323 gGkI~~f~s~~pt~GpG~l~~r~~~~~~~~~~~~~~l~~~~~~fY~~la~~~~~~~isvDlF~~s~~~~dlatl~~l~~~ 402 (810) T 1pcx_A 323 GGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRF 402 (810) T ss_dssp CEEEEEEESSCCCSSTTCCCC--------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHT T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHH T ss_conf 98699995779867886321045544457734556532537899999999999879359998604777772888888874 Q ss_pred CCCCEEEE-----CCHHHHHHHHHHHHHHHHE Q ss_conf 89817983-----8989999999999984200 Q gi|254780934|r 341 SPNSFYLV-----ENPHSMYDAFSHIGKDIVT 367 (374) Q Consensus 341 s~~~~~~a-----~~~~~L~~~f~~I~~~i~~ 367 (374) |+|..|+- ....+....+.++.+.++. T Consensus 403 TGG~v~~y~~F~~~~~~d~~~l~~dl~~~l~~ 434 (810) T 1pcx_A 403 TAGQTHFYPGFSGKNPNDIVKFSTEFAKHISM 434 (810) T ss_dssp TTCCEEEEETCCTTSHHHHHHHHHHHHHHHHC T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 58469980686644345789999999986566 No 34 >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Probab=95.82 E-value=0.075 Score=28.33 Aligned_cols=181 Identities=11% Similarity=0.105 Sum_probs=101.2 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCCEEEEEEEECCCCEE--------------- Q ss_conf 78724999965786451131353137999999887632210023-66567348999982685056--------------- Q gi|254780934|r 169 DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLI-PDVNNVVQSGLVTFSNKIEE--------------- 232 (374) Q Consensus 169 ~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------------- 232 (374) ..+.-++||+|.|...-.. .-.+.+++++...++.+... .......++|++.|+..+.. T Consensus 171 ~~pp~~vfvID~S~~a~~~-----g~~~~~~~~i~~~l~~lp~~~~~~~~~~~vglitf~~~v~~~~~~~~~~~~~~~v~ 245 (766) T 3eh2_A 171 PSPPAFIFMIDVSYNAIRT-----GLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVV 245 (766) T ss_dssp CCCCEEEEEEECSHHHHHT-----THHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEE T ss_pred CCCCEEEEEEECCHHHHHH-----HHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEC T ss_conf 9987899999887477665-----48999999999999846122224775248999973877998446786433347640 Q ss_pred --------------EEECCCCHHHHHHHHHHCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE Q ss_conf --------------10204786899999860133-----68774442036767764322233331025788656427999 Q gi|254780934|r 233 --------------FFLLEWGVSHLQRKIKYLSK-----FGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVF 293 (374) Q Consensus 233 --------------~~~~t~~~~~~~~~i~~l~~-----~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iil 293 (374) ..++...+..+.+.++.+.. ....+..+.++..+...+... ...-+++++ T Consensus 246 ~d~~d~~~p~~~~~l~~~~e~~~~i~~lL~~l~~~~~~~~~~~~~~g~Al~~a~~~l~~~-----------~~gG~ii~f 314 (766) T 3eh2_A 246 SDVADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAA-----------ECAGKLFLF 314 (766) T ss_dssp CCTTTCCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHT-----------TCCEEEEEE T ss_pred CCCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-----------CCCCCEEEE T ss_conf 573113555665502155888999999987364334688788754799999999997055-----------779848999 Q ss_pred EECCCCCCCC-----------------------CCHHHHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHC--CCCCEEE Q ss_conf 8068778888-----------------------806899999999978987999992482-2278899823--8981798 Q gi|254780934|r 294 MTDGENLSTK-----------------------EDQQSLYYCNEAKKRGAIVYAIGIRVI-RSHEFLRACA--SPNSFYL 347 (374) Q Consensus 294 lTDG~~~~~~-----------------------~~~~~~~~~~~~k~~gi~IytIg~~~~-~~~~~L~~~A--s~~~~~~ 347 (374) .+.|..+.+. ...-...++..+...||.|..+.+..+ .+-..|..++ |+|..|. T Consensus 315 ~~s~P~t~GpG~l~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~~~dl~~l~~l~~~TGG~v~~ 394 (766) T 3eh2_A 315 HTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYK 394 (766) T ss_dssp ECSCCCSSSTTCCCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEE T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEE T ss_conf 51688778997420443223457620133305625899999999998695799999548765879999998744955999 Q ss_pred ECCH--HH-HHHHHHHHHHHH Q ss_conf 3898--99-999999999842 Q gi|254780934|r 348 VENP--HS-MYDAFSHIGKDI 365 (374) Q Consensus 348 a~~~--~~-L~~~f~~I~~~i 365 (374) .++. .. ......++.+.+ T Consensus 395 ~~~f~~~~~~~~l~~~l~~~~ 415 (766) T 3eh2_A 395 YASFQVENDQERFLSDLRRDV 415 (766) T ss_dssp CTTCCHHHHHHHHHHHHHHHH T ss_pred ECCCCCCCHHHHHHHHHHHHH T ss_conf 689764222789999999975 No 35 >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Probab=75.26 E-value=3.3 Score=18.57 Aligned_cols=15 Identities=13% Similarity=-0.040 Sum_probs=11.8 Q ss_pred HHHCCCEEEEEEECC Q ss_conf 997898799999248 Q gi|254780934|r 315 AKKRGAIVYAIGIRV 329 (374) Q Consensus 315 ~k~~gi~IytIg~~~ 329 (374) ++..||++.+|..|. T Consensus 175 l~~~gIrVN~V~PG~ 189 (251) T 1zk4_A 175 LKDYDVRVNTVHPGY 189 (251) T ss_dssp HTTCSEEEEEEEECC T ss_pred CCCCCEEEEEEEECC T ss_conf 069997999996188 No 36 >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Probab=73.34 E-value=3.6 Score=18.28 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=27.1 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCC-------CHHHHHHHC--CC-CCEEEECCHHHHHHHHHHHH Q ss_conf 999999999789879999924822-------278899823--89-81798389899999999999 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRVIR-------SHEFLRACA--SP-NSFYLVENPHSMYDAFSHIG 362 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~~~-------~~~~L~~~A--s~-~~~~~a~~~~~L~~~f~~I~ 362 (374) ++.++.++...||++.+|.-|.-. .++..+... .+ +++ -+++|+.++..-++ T Consensus 159 tk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R~---~~pedia~~v~fL~ 220 (245) T 1uls_A 159 TRTLALELGRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATPLGRA---GKPLEVAYAALFLL 220 (245) T ss_dssp HHHHHHHHGGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTCTTCSC---BCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCC---CCHHHHHHHHHHHH T ss_conf 999999960429299999628798701001699999999856998899---49999999999995 No 37 >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Probab=64.51 E-value=5.6 Score=17.16 Aligned_cols=21 Identities=19% Similarity=-0.007 Sum_probs=16.0 Q ss_pred HHHHHHHHHCCCEEEEEEECC Q ss_conf 999999997898799999248 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~ 329 (374) +.++.+....||++.+|..|. T Consensus 165 k~lA~el~~~gIrVN~I~PG~ 185 (260) T 1nff_A 165 KSTALELGPSGIRVNSIHPGL 185 (260) T ss_dssp HHHHHHHGGGTEEEEEEEECC T ss_pred HHHHHHHHHHCEEEEEEEECC T ss_conf 999998504294999996088 No 38 >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Probab=63.67 E-value=5.8 Score=17.07 Aligned_cols=51 Identities=14% Similarity=0.168 Sum_probs=27.6 Q ss_pred HHHHHHHHCCCEEEEEEECC---C-------CCHHHH----HHHCCC-CCEEEECCHHHHHHHHHHHHH Q ss_conf 99999997898799999248---2-------227889----982389-817983898999999999998 Q gi|254780934|r 310 YYCNEAKKRGAIVYAIGIRV---I-------RSHEFL----RACASP-NSFYLVENPHSMYDAFSHIGK 363 (374) Q Consensus 310 ~~~~~~k~~gi~IytIg~~~---~-------~~~~~L----~~~As~-~~~~~a~~~~~L~~~f~~I~~ 363 (374) .++.++...||++.+|.-|. + .+.+.. +....+ ++ .-+++|+.++.--++. T Consensus 180 ~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~gR---~~~pediA~~v~fL~S 245 (278) T 2bgk_A 180 SLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGT---LLRAEDVADAVAYLAG 245 (278) T ss_dssp HHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSCSC---CCCHHHHHHHHHHHHS T ss_pred HHHHHHHHHCCEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCC---CCCHHHHHHHHHHHHC T ss_conf 99998625490999996198987466543027878999999743465789---8199999999999967 No 39 >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Probab=62.62 E-value=6.1 Score=16.95 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=16.5 Q ss_pred HHHHHHHHHHCCCEEEEEEECC Q ss_conf 9999999997898799999248 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~ 329 (374) ++.++.++...||++.+|.-|. T Consensus 185 t~~lA~el~~~gIrVN~I~PG~ 206 (266) T 3o38_A 185 TRCSAIEAVEFGVRINAVSPSI 206 (266) T ss_dssp HHHHHHHHGGGTEEEEEEEECC T ss_pred HHHHHHHHHHHCEEEEEEECCC T ss_conf 9999998604193899997877 No 40 >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Probab=61.98 E-value=6.3 Score=16.88 Aligned_cols=21 Identities=14% Similarity=-0.103 Sum_probs=16.0 Q ss_pred HHHHHHHHHCCCEEEEEEECC Q ss_conf 999999997898799999248 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~ 329 (374) +.++.++...||+|.+|..|. T Consensus 172 r~lA~e~~~~gIrVN~I~PG~ 192 (261) T 3n74_A 172 KALAIELAPAKIRVVALNPVA 192 (261) T ss_dssp HHHHHHHGGGTEEEEEEEEC- T ss_pred HHHHHHHCCCCEEEEEEECCC T ss_conf 999985275584999984285 No 41 >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Probab=60.52 E-value=6.7 Score=16.73 Aligned_cols=21 Identities=10% Similarity=-0.040 Sum_probs=16.2 Q ss_pred HHHHHHHHHCCCEEEEEEECC Q ss_conf 999999997898799999248 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~ 329 (374) +.++.++...||++.+|..|. T Consensus 187 k~lA~ela~~gIrVN~V~PG~ 207 (277) T 3gvc_A 187 RITAAELRSSGIRSNTLLPAF 207 (277) T ss_dssp HHHHHHHGGGTEEEEEEEECS T ss_pred HHHHHHHHHHCEEEEEEEECC T ss_conf 999998604191999996288 No 42 >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Probab=58.74 E-value=7.1 Score=16.54 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=34.0 Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH Q ss_conf 9999999978987999992482227889982389817983898999999999998 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSHIGK 363 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~~~~~~~L~~~As~~~~~~a~~~~~L~~~f~~I~~ 363 (374) ..++.+++..||++.+|.-|. .+.++.+....+-.--..-+++++.++..-+.. T Consensus 170 ~sla~El~~~gIrVn~i~PG~-v~T~~~~~~~~~~~~~~~~~PedvA~~v~fl~s 223 (250) T 3nyw_A 170 ESLYRELAPLGIRVTTLCPGW-VNTDMAKKAGTPFKDEEMIQPDDLLNTIRCLLN 223 (250) T ss_dssp HHHHHHHGGGTEEEEEEEESS-BCSHHHHHTTCCSCGGGSBCHHHHHHHHHHHHT T ss_pred HHHHHHHCCCCCEEEEEECCC-CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC T ss_conf 999998552091999997298-987588740778866677799999999999977 No 43 >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reductase family; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus HB8} Probab=58.38 E-value=7.2 Score=16.50 Aligned_cols=71 Identities=8% Similarity=-0.061 Sum_probs=37.5 Q ss_pred EEEEEEECCCCCCCCCC------------HHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCCCCEEEECCHHHHHH Q ss_conf 27999806877888880------------689999999997898799999248222788998238981798389899999 Q gi|254780934|r 289 KIIVFMTDGENLSTKED------------QQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYD 356 (374) Q Consensus 289 k~iillTDG~~~~~~~~------------~~~~~~~~~~k~~gi~IytIg~~~~~~~~~L~~~As~~~~~~a~~~~~L~~ 356 (374) -.||.++-..-..+... ..+..++.++...||++.+|.-|. .+.++.+... +..+. -.++++.+ T Consensus 130 G~IvnisS~~~~~~~~~~~~Y~asK~al~~lt~~la~el~~~gIrVn~I~PG~-v~T~~~~~~~--~~~~~-~~PediA~ 205 (234) T 2ehd_A 130 GTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGS-VDTGFAGNTP--GQAWK-LKPEDVAQ 205 (234) T ss_dssp EEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC--------------------CCHHHHHH T ss_pred CEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-CCCCCCCCCC--CCCCC-CCHHHHHH T ss_conf 78999846877788999847999999999999999998481285999997188-9770000788--77546-99999999 Q ss_pred HHHHHHH Q ss_conf 9999998 Q gi|254780934|r 357 AFSHIGK 363 (374) Q Consensus 357 ~f~~I~~ 363 (374) +.--+.. T Consensus 206 ~i~~l~s 212 (234) T 2ehd_A 206 AVLFALE 212 (234) T ss_dssp HHHHHHH T ss_pred HHHHHHC T ss_conf 9999978 No 44 >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Probab=57.49 E-value=7.5 Score=16.41 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=25.5 Q ss_pred HHHHHHH--HCCCEEEEEEECCCCCHHHHHHHCCCC--------CEEEECCHHHHHHHHHHHHH Q ss_conf 9999999--789879999924822278899823898--------17983898999999999998 Q gi|254780934|r 310 YYCNEAK--KRGAIVYAIGIRVIRSHEFLRACASPN--------SFYLVENPHSMYDAFSHIGK 363 (374) Q Consensus 310 ~~~~~~k--~~gi~IytIg~~~~~~~~~L~~~As~~--------~~~~a~~~~~L~~~f~~I~~ 363 (374) .++.+++ ..||++.+|.-|.-. .+..+...... ..-..-+++|+.++.--++. T Consensus 200 ~la~El~~~~~gIrvn~I~PG~v~-T~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~fL~S 262 (279) T 1xg5_A 200 GLRQELREAQTHIRATCISPGVVE-TQFAFKLHDKDPEKAAATYEQMKCLKPEDVAEAVIYVLS 262 (279) T ss_dssp HHHHHHHHTTCCCEEEEEEESCBC-SSHHHHHTTTCHHHHHHHHC---CBCHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCEEEEEEEECCCC-CHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC T ss_conf 999999858999899999718698-865552160229999843878888299999999999968 No 45 >3imf_A Short chain dehydrogenase; structural genomics, infectious diseases, center for structural genomics of infectious diseases, oxidoreductase; HET: MSE; 1.99A {Bacillus anthracis str} Probab=54.85 E-value=8.3 Score=16.15 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=26.6 Q ss_pred HHHHHHH-HHCCCEEEEEEECC---CCC-------HHHHHHHC--CC-CCEEEECCHHHHHHHHHHHHH Q ss_conf 9999999-97898799999248---222-------78899823--89-817983898999999999998 Q gi|254780934|r 309 LYYCNEA-KKRGAIVYAIGIRV---IRS-------HEFLRACA--SP-NSFYLVENPHSMYDAFSHIGK 363 (374) Q Consensus 309 ~~~~~~~-k~~gi~IytIg~~~---~~~-------~~~L~~~A--s~-~~~~~a~~~~~L~~~f~~I~~ 363 (374) +.++.++ .+.||++.+|.-|. +.. ++..+... .| ++ .-+++|+.++..=++. T Consensus 168 k~lA~ela~~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~~pl~R---~g~pedia~~v~fL~S 233 (257) T 3imf_A 168 KTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSVPLGR---LGTPEEIAGLAYYLCS 233 (257) T ss_dssp HHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHTTSTTCS---CBCHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHC T ss_conf 99999966755918999953878572033223599999999984699889---8599999999999968 No 46 >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase; 2.09A {Bartonella henselae str} PDB: 3enn_A 3emk_A Probab=53.56 E-value=8.7 Score=16.03 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=29.4 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCC-------CHHHHHHHCC--C-CCEEEECCHHHHHHHHHHHHH Q ss_conf 999999999789879999924822-------2788998238--9-817983898999999999998 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRVIR-------SHEFLRACAS--P-NSFYLVENPHSMYDAFSHIGK 363 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~~~-------~~~~L~~~As--~-~~~~~a~~~~~L~~~f~~I~~ 363 (374) ++.++.++...||++.+|..|.-. .++..+.... | ++ .-.++|+.++.--++. T Consensus 184 tk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R---~~~pediA~~v~fL~S 246 (266) T 3grp_A 184 SKALAQEIASRNITVNCIAPGFIKSAMTDKLNEKQKEAIMAMIPMKR---MGIGEEIAFATVYLAS 246 (266) T ss_dssp HHHHHHHHGGGTEEEEEEEECSBCSHHHHTCCHHHHHHHHTTCTTCS---CBCHHHHHHHHHHHHS T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCHHCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHC T ss_conf 99999996624928999960888872001039999999985699889---9699999999999957 No 47 >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Probab=52.45 E-value=9.1 Score=15.92 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=27.4 Q ss_pred HHHHHHHHHCCCEEEEEEECCCC-------CHHHHHHHC--CC-CCEEEECCHHHHHHHHHHHH Q ss_conf 99999999789879999924822-------278899823--89-81798389899999999999 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRVIR-------SHEFLRACA--SP-NSFYLVENPHSMYDAFSHIG 362 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~~~-------~~~~L~~~A--s~-~~~~~a~~~~~L~~~f~~I~ 362 (374) +.++.++...||++.+|..|.-. .++..+... .| ++ .-+++|+.++.--+. T Consensus 167 ~~la~e~~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R---~~~pedvA~~v~fL~ 227 (248) T 3op4_A 167 KSMAREVASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQVPAGR---LGDPREIASAVAFLA 227 (248) T ss_dssp HHHHHHHGGGTEEEEEEEECSBSSTTTTTSCHHHHHHHHHTCTTCS---CBCHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHH T ss_conf 9889986324908999951989773331049999999985699889---859999999999995 No 48 >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protein structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Probab=52.18 E-value=9.2 Score=15.89 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=28.3 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCC-------CHHHHHHHC-C-C-CCEEEECCHHHHHHHHHHHHH Q ss_conf 999999999789879999924822-------278899823-8-9-817983898999999999998 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRVIR-------SHEFLRACA-S-P-NSFYLVENPHSMYDAFSHIGK 363 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~~~-------~~~~L~~~A-s-~-~~~~~a~~~~~L~~~f~~I~~ 363 (374) ++.++.++...||+|.+|..|.-. .++..+... . + ++ .-+++|+.++.--+.. T Consensus 160 tk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R---~g~p~eiA~~v~fL~S 222 (263) T 2a4k_A 160 ARTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASPLGR---AGRPEEVAQAALFLLS 222 (263) T ss_dssp HHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTSTTCS---CBCHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCHHHCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHC T ss_conf 99999986141909999962889871000499899999971799889---8499999999999957 No 49 >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Probab=52.10 E-value=9.2 Score=15.89 Aligned_cols=20 Identities=15% Similarity=-0.086 Sum_probs=13.3 Q ss_pred HHHHHHHH--CCCEEEEEEECC Q ss_conf 99999997--898799999248 Q gi|254780934|r 310 YYCNEAKK--RGAIVYAIGIRV 329 (374) Q Consensus 310 ~~~~~~k~--~gi~IytIg~~~ 329 (374) .++.++.. .||++.+|..|. T Consensus 164 ~lA~el~~~g~~IrVN~V~PG~ 185 (253) T 1hxh_A 164 AAALSCRKQGYAIRVNSIHPDG 185 (253) T ss_dssp HHHHHHHHHTCCEEEEEEEESE T ss_pred HHHHHHHHHCCCEEEEEEEECC T ss_conf 9999976508987999997398 No 50 >1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Probab=51.76 E-value=9.3 Score=15.85 Aligned_cols=21 Identities=5% Similarity=0.036 Sum_probs=8.4 Q ss_pred CCEEEECCHHHHHHHHHHHHH Q ss_conf 817983898999999999998 Q gi|254780934|r 343 NSFYLVENPHSMYDAFSHIGK 363 (374) Q Consensus 343 ~~~~~a~~~~~L~~~f~~I~~ 363 (374) ++...+.++....+...++.+ T Consensus 169 ~~iITa~g~~~~~~fa~~~i~ 189 (193) T 1oi4_A 169 DQLVTSRTPDDLPAFNREALR 189 (193) T ss_dssp TTEEEESSGGGHHHHHHHHHH T ss_pred CEEEECCCHHHHHHHHHHHHH T ss_conf 979989976279999999999 No 51 >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Probab=50.80 E-value=9.7 Score=15.76 Aligned_cols=21 Identities=10% Similarity=-0.031 Sum_probs=16.3 Q ss_pred HHHHHHHHHCCCEEEEEEECC Q ss_conf 999999997898799999248 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~ 329 (374) +.++.++...||++.+|.-|. T Consensus 164 k~lA~el~~~gIrVN~I~PG~ 184 (256) T 1geg_A 164 QTAARDLAPLGITVNGYCPGI 184 (256) T ss_dssp HHHHHHHGGGTEEEEEEEECS T ss_pred HHHHHHHHHHCEEEEEEEECC T ss_conf 999998602290999996188 No 52 >1k2w_A Sorbitol dehydrogenase; short-chain dehydrogenase, enzyme, oxidoreductase; 2.40A {Rhodobacter sphaeroides} SCOP: c.2.1.2 Probab=49.95 E-value=10 Score=15.68 Aligned_cols=21 Identities=24% Similarity=0.033 Sum_probs=16.2 Q ss_pred HHHHHHHHHCCCEEEEEEECC Q ss_conf 999999997898799999248 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~ 329 (374) +.++.++...||++.+|..|. T Consensus 164 r~lA~el~~~gIrVN~I~PG~ 184 (256) T 1k2w_A 164 QSAGLNLIRHGINVNAIAPGV 184 (256) T ss_dssp HHHHHHHGGGTEEEEEEEECC T ss_pred HHHHHHHHHHCEEEEEEECCC T ss_conf 999999736591799984387 No 53 >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold; HET: 1PE MES; 1.80A {Aquifex aeolicus VF5} PDB: 2p68_A* Probab=49.19 E-value=10 Score=15.61 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=28.3 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCC-------CHHHHHHHC--CC-CCEEEECCHHHHHHHHHHHH Q ss_conf 999999999789879999924822-------278899823--89-81798389899999999999 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRVIR-------SHEFLRACA--SP-NSFYLVENPHSMYDAFSHIG 362 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~~~-------~~~~L~~~A--s~-~~~~~a~~~~~L~~~f~~I~ 362 (374) ++.++.++...||++.+|.-|.-. .++..+... .+ ++ .-+++|+.++.--++ T Consensus 168 t~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R---~~~pediA~~v~fL~ 229 (248) T 2pnf_A 168 TKSLAKELAPRNVLVNAVAPGFIETDMTAVLSEEIKQKYKEQIPLGR---FGSPEEVANVVLFLC 229 (248) T ss_dssp HHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCTTSS---CBCHHHHHHHHHHHH T ss_pred HHHHHHHHCHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHH T ss_conf 99999985510818999950889776532159999999984699889---819999999999995 No 54 >3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A* Probab=48.11 E-value=11 Score=15.51 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=25.2 Q ss_pred HHHHHHHHHCCCEEEEEEECC---CCCHHHHHHHC--CC-CCEEEECCHHHHHHHHHHHH Q ss_conf 999999997898799999248---22278899823--89-81798389899999999999 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRV---IRSHEFLRACA--SP-NSFYLVENPHSMYDAFSHIG 362 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~---~~~~~~L~~~A--s~-~~~~~a~~~~~L~~~f~~I~ 362 (374) +.++.++. .||++.+|..|. +..++..+... .| +++ -+++|+.++..-++ T Consensus 158 k~lA~ela-~~IrVN~V~PG~i~t~~~~~~~~~~~~~~p~~R~---g~pedvA~~v~fL~ 213 (247) T 3dii_A 158 HALAMSLG-PDVLVNCIAPGWINVTEQQEFTQEDCAAIPAGKV---GTPKDISNMVLFLC 213 (247) T ss_dssp HHHHHHHT-TTSEEEEEEECSBCCCC---CCHHHHHTSTTSSC---BCHHHHHHHHHHHH T ss_pred HHHHHHHC-CCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCC---CCHHHHHHHHHHHH T ss_conf 99999978-9998999966868676628789999955998898---39999999999998 No 55 >3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* Probab=46.51 E-value=11 Score=15.36 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=15.9 Q ss_pred HHHHHHHHHCCCEEEEEEECC Q ss_conf 999999997898799999248 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~ 329 (374) +.++.++...||++.+|..|. T Consensus 195 r~lA~ela~~gIrVN~I~PG~ 215 (291) T 3cxt_A 195 KNIASEYGEANIQCNGIGPGY 215 (291) T ss_dssp HHHHHHHGGGTEEEEEEEECS T ss_pred HHHHHHHCCCCEEEEEEECCC T ss_conf 999998652192999995297 No 56 >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Probab=45.02 E-value=12 Score=15.22 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=28.2 Q ss_pred HHHHHHHHHCCCEEEEEEECCCC---------CHHHHHHHC--CC-CCEEEECCHHHHHHHHHHHH Q ss_conf 99999999789879999924822---------278899823--89-81798389899999999999 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRVIR---------SHEFLRACA--SP-NSFYLVENPHSMYDAFSHIG 362 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~~~---------~~~~L~~~A--s~-~~~~~a~~~~~L~~~f~~I~ 362 (374) +.++.++...||++.+|.-|.-. +.+.++... .| ++ .-+++|+.++..=++ T Consensus 194 r~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R---~g~pedvA~~v~fL~ 256 (276) T 2b4q_A 194 RMLAKELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADSASIPMGR---WGRPEEMAALAISLA 256 (276) T ss_dssp HHHHHHHGGGTEEEEEEEECCCCSTTTHHHHHCHHHHHHHHHTSTTSS---CCCHHHHHHHHHHHH T ss_pred HHHHHHHCCCCEEEEEEECCCCCCHHHHHHCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHH T ss_conf 999999661581899996486987778641479999999985699889---809999999999996 No 57 >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Probab=44.65 E-value=12 Score=15.18 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=16.4 Q ss_pred HHHHHHHHHHCCCEEEEEEECC Q ss_conf 9999999997898799999248 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~ 329 (374) ++.++.++...||++.+|..|. T Consensus 170 tk~lA~el~~~gIrVN~I~PG~ 191 (260) T 2ae2_A 170 TRCLAFEWAKDNIRVNGVGPGV 191 (260) T ss_dssp HHHHHHHTGGGTEEEEEEEECS T ss_pred HHHHHHHHHHCCEEEEEEECCC T ss_conf 9999998532091999995098 No 58 >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Probab=44.39 E-value=12 Score=15.16 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=16.4 Q ss_pred HHHHHHHHHHCCCEEEEEEECC Q ss_conf 9999999997898799999248 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~ 329 (374) ++.++.++...||+|.+|..|. T Consensus 175 tk~lA~ela~~gIrVN~I~PG~ 196 (260) T 2zat_A 175 TKNLAVELAPRNIRVNCLAPGL 196 (260) T ss_dssp HHHHHHHHGGGTEEEEEEEECS T ss_pred HHHHHHHHHHHCEEEEEEECCC T ss_conf 9999999634496999860386 No 59 >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3- hydroxybutyryl-COA dehydrogenase, MHBD; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Probab=44.02 E-value=12 Score=15.13 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=29.1 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCC-------CHHHHHHHC----CCCCEEEECCHHHHHHHHHHHHH Q ss_conf 999999999789879999924822-------278899823----89817983898999999999998 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRVIR-------SHEFLRACA----SPNSFYLVENPHSMYDAFSHIGK 363 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~~~-------~~~~L~~~A----s~~~~~~a~~~~~L~~~f~~I~~ 363 (374) ++.++.++...||++.+|.-|.-. .++..+... -.++ .-+++|+.+++.-+.. T Consensus 181 tr~lA~ela~~gIrVN~I~PG~i~T~~~~~~~e~~~~~~~~~~pl~~R---~g~peevA~~v~fL~s 244 (265) T 2o23_A 181 TLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVPFPSR---LGDPAEYAHLVQAIIE 244 (265) T ss_dssp HHHHHHHHGGGTEEEEEEEECCBCCC----------CHHHHTCSSSCS---CBCHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCHHHHCCHHHHHHHHHCCCCCCC---CCCHHHHHHHHHHHHH T ss_conf 999999956409778897018715812230899999999955998889---8299999999999986 No 60 >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Probab=42.74 E-value=13 Score=15.01 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=28.2 Q ss_pred HHHHHHHHHCCCEEEEEEECCCC--------CHHHHHHHC--CC-CCEEEECCHHHHHHHHHHHH Q ss_conf 99999999789879999924822--------278899823--89-81798389899999999999 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRVIR--------SHEFLRACA--SP-NSFYLVENPHSMYDAFSHIG 362 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~~~--------~~~~L~~~A--s~-~~~~~a~~~~~L~~~f~~I~ 362 (374) +.++.++...||++.+|..|.-. .++..+... .| +++ -+++|+.++..=++ T Consensus 171 k~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~pl~R~---g~pedvA~~v~fL~ 232 (255) T 1fmc_A 171 RNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRL---GQPQDIANAALFLC 232 (255) T ss_dssp HHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCSSCSC---BCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCEEEEEEEECCCCCHHHHCCCCHHHHHHHHHCCCCCCC---CCHHHHHHHHHHHH T ss_conf 999999631193999996098967244302899999999856998898---39999999999995 No 61 >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Probab=41.53 E-value=14 Score=14.89 Aligned_cols=51 Identities=10% Similarity=0.103 Sum_probs=26.7 Q ss_pred HHHHHHHHHCCCEEEEEEECCCC-----CHHHHHHHC--CC-CCEEEECCHHHHHHHHHHHHH Q ss_conf 99999999789879999924822-----278899823--89-817983898999999999998 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRVIR-----SHEFLRACA--SP-NSFYLVENPHSMYDAFSHIGK 363 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~~~-----~~~~L~~~A--s~-~~~~~a~~~~~L~~~f~~I~~ 363 (374) +.++.++.. +|++.+|..|.-. +....+... .+ ++ ..+++|+.+++.-+.+ T Consensus 182 k~lA~el~~-~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~l~r---~~~pedvA~~v~fL~~ 240 (260) T 3gem_A 182 LSFAARFAP-LVKVNGIAPALLMFQPKDDAAYRANALAKSALGI---EPGAEVIYQSLRYLLD 240 (260) T ss_dssp HHHHHHHTT-TCEEEEEEECTTCC---------------CCSCC---CCCTHHHHHHHHHHHH T ss_pred HHHHHHHCC-CCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHH T ss_conf 999999789-9989999707787798899899999985688899---9899999999999982 No 62 >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Probab=41.32 E-value=14 Score=14.87 Aligned_cols=22 Identities=14% Similarity=-0.117 Sum_probs=16.9 Q ss_pred HHHHHHHHHHCCCEEEEEEECC Q ss_conf 9999999997898799999248 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~ 329 (374) ++.++.++...||+|.+|.-|. T Consensus 168 tk~lA~El~~~gIrVN~I~PG~ 189 (262) T 1zem_A 168 TETAALDLAPYNIRVNAISPGY 189 (262) T ss_dssp HHHHHHHHGGGTEEEEEEEECS T ss_pred HHHHHHHHHHHCCEEEEEECCC T ss_conf 9999998513290999995697 No 63 >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Probab=41.31 E-value=14 Score=14.87 Aligned_cols=21 Identities=14% Similarity=0.010 Sum_probs=15.4 Q ss_pred HHHHHHHHHCCCEEEEEEECC Q ss_conf 999999997898799999248 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~ 329 (374) +.++.+++..||++.+|.-|. T Consensus 163 ~~la~el~~~gIrvn~v~PG~ 183 (281) T 3m1a_A 163 EGLADEVAPFGIKVLIVEPGA 183 (281) T ss_dssp HHHHHHHGGGTEEEEEEEECC T ss_pred HHHHHHHCCCCCEEEEEEECC T ss_conf 999998451090999997088 No 64 >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Probab=40.83 E-value=14 Score=14.83 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=29.5 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCC-------CHHHHHHHCC--C-CCEEEECCHHHHHHHHHHHHH Q ss_conf 999999999789879999924822-------2788998238--9-817983898999999999998 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRVIR-------SHEFLRACAS--P-NSFYLVENPHSMYDAFSHIGK 363 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~~~-------~~~~L~~~As--~-~~~~~a~~~~~L~~~f~~I~~ 363 (374) ++.++.++...||++.+|..|.-. .++..+.... + +++ -+++|+.++.--++. T Consensus 204 tr~lA~Ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~plgR~---g~pediA~~v~fL~S 266 (285) T 2c07_A 204 TKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISNIPAGRM---GTPEEVANLACFLSS 266 (285) T ss_dssp HHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHHHHHHTTCTTSSC---BCHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHCEEEEEEECCCCCCHHHHHCCHHHHHHHHHCCCCCCC---CCHHHHHHHHHHHHC T ss_conf 999999964338579999679786724440499999999846998898---999999999999948 No 65 >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Probab=40.82 E-value=14 Score=14.83 Aligned_cols=22 Identities=18% Similarity=0.063 Sum_probs=17.0 Q ss_pred HHHHHHHHHHCCCEEEEEEECC Q ss_conf 9999999997898799999248 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~ 329 (374) ++.++.++...||++.+|..|. T Consensus 176 t~~lA~e~~~~gIrVN~v~PG~ 197 (267) T 1iy8_A 176 TRNSAVEYGRYGIRINAIAPGA 197 (267) T ss_dssp HHHHHHHHGGGTCEEEEEEECS T ss_pred HHHHHHHHHHHCCEEEEEECCC T ss_conf 9999998603190899996198 No 66 >1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3 Probab=40.57 E-value=14 Score=14.80 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=31.5 Q ss_pred CCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEC Q ss_conf 8865642799980687788888068999999999789879999924 Q gi|254780934|r 283 EDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIR 328 (374) Q Consensus 283 ~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~~ 328 (374) ..-..+|+.||++||- +........+.+++.|+.+..|+.. T Consensus 530 ~tl~grKVaILvadGf-----Ee~E~~~~~~~L~~aG~~V~vV~~~ 570 (715) T 1sy7_A 530 PTIKSRRVAIIIADGY-----DNVAYDAAYAAISANQAIPLVIGPR 570 (715) T ss_dssp SCCTTCEEEEECCTTB-----CHHHHHHHHHHHHHTTCEEEEEESC T ss_pred CCCCCCEEEEEECCCC-----CHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 3456767999816873-----4899999999999779967998567 No 67 >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Probab=40.19 E-value=14 Score=14.77 Aligned_cols=74 Identities=12% Similarity=0.016 Sum_probs=37.4 Q ss_pred EEEEEEECCCCCCCCCC------------HHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCC--CCEE-------E Q ss_conf 27999806877888880------------6899999999978987999992482227889982389--8179-------8 Q gi|254780934|r 289 KIIVFMTDGENLSTKED------------QQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASP--NSFY-------L 347 (374) Q Consensus 289 k~iillTDG~~~~~~~~------------~~~~~~~~~~k~~gi~IytIg~~~~~~~~~L~~~As~--~~~~-------~ 347 (374) -.||.++-..-..+... ..++.++.++...||++.+|.-|.- ..+..+..... .... . T Consensus 131 G~Iv~isS~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i-~T~~~~~~~~~~~~~~~~~~pl~R~ 209 (254) T 1hdc_A 131 GSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMT-YTPMTAETGIRQGEGNYPNTPMGRV 209 (254) T ss_dssp EEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSB-CCHHHHHHTCCCSTTSCTTSTTSSC T ss_pred EEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC-CCCCCCCCCHHHHHHHHHCCCCCCC T ss_conf 089984757762788885457999999999999999985701818999961879-8855420187789988747997787 Q ss_pred ECCHHHHHHHHHHHHH Q ss_conf 3898999999999998 Q gi|254780934|r 348 VENPHSMYDAFSHIGK 363 (374) Q Consensus 348 a~~~~~L~~~f~~I~~ 363 (374) ...++|+.++.--++. T Consensus 210 g~~PedvA~~v~fL~S 225 (254) T 1hdc_A 210 GNEPGEIAGAVVKLLS 225 (254) T ss_dssp B-CHHHHHHHHHHHHS T ss_pred CCCHHHHHHHHHHHHC T ss_conf 9899999999999957 No 68 >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Probab=40.10 E-value=14 Score=14.76 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=29.2 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCC---------CHHHHHHHCC--C-CCEEEECCHHHHHHHHHHHHH Q ss_conf 999999999789879999924822---------2788998238--9-817983898999999999998 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRVIR---------SHEFLRACAS--P-NSFYLVENPHSMYDAFSHIGK 363 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~~~---------~~~~L~~~As--~-~~~~~a~~~~~L~~~f~~I~~ 363 (374) ++.++.++...||++.+|..|.-. .++..+.... + ++ .-+++|+.++.--++. T Consensus 166 tr~lA~El~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R---~g~pedvA~~v~fL~S 230 (250) T 2cfc_A 166 TKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKE---IGTAAQVADAVMFLAG 230 (250) T ss_dssp HHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHTSHHHHHHHHTTCTTCS---CBCHHHHHHHHHHHHS T ss_pred HHHHHHHHHHCCEEEEEEEECCCCCHHHHHCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHC T ss_conf 9999999624095999961087878767622699999999985599889---9499999999999958 No 69 >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Probab=38.94 E-value=15 Score=14.65 Aligned_cols=12 Identities=17% Similarity=-0.092 Sum_probs=4.9 Q ss_pred HHHHCCCEEEEE Q ss_conf 999789879999 Q gi|254780934|r 314 EAKKRGAIVYAI 325 (374) Q Consensus 314 ~~k~~gi~IytI 325 (374) +++..||+|.+| T Consensus 182 El~~~gIrVn~v 193 (319) T 3ioy_A 182 SLLKYEIGVSVL 193 (319) T ss_dssp HHGGGTCEEEEE T ss_pred HHCHHCCEEEEE T ss_conf 845118789999 No 70 >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Probab=38.52 E-value=15 Score=14.61 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=28.3 Q ss_pred HHHHHHHHHCCCEEEEEEECCCC-------CHHHHHHHCC--C-CCEEEECCHHHHHHHHHHHH Q ss_conf 99999999789879999924822-------2788998238--9-81798389899999999999 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRVIR-------SHEFLRACAS--P-NSFYLVENPHSMYDAFSHIG 362 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~~~-------~~~~L~~~As--~-~~~~~a~~~~~L~~~f~~I~ 362 (374) +.++.++...||++.+|..|.-. .++..+.... | +++ -.++|+.++..-+. T Consensus 166 ~~lA~el~~~gIrVN~v~PG~~~T~~~~~~~~~~~~~~~~~~pl~R~---~~pedvA~~v~fL~ 226 (247) T 3lyl_A 166 KSLAYEVASRNITVNVVAPGFIATDMTDKLTDEQKSFIATKIPSGQI---GEPKDIAAAVAFLA 226 (247) T ss_dssp HHHHHHHGGGTEEEEEEEECSBCCTTTTTSCHHHHHHHHTTSTTCCC---BCHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCEEEEEEECCCCCCHHHHCCHHHHHHHHHCCCCCCC---CCHHHHHHHHHHHH T ss_conf 99999964039379998508776811231499999999866998898---79999999999994 No 71 >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, human, structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Probab=38.18 E-value=15 Score=14.58 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=12.3 Q ss_pred HHHHHHH---CCCEEEEEEECC Q ss_conf 9999997---898799999248 Q gi|254780934|r 311 YCNEAKK---RGAIVYAIGIRV 329 (374) Q Consensus 311 ~~~~~k~---~gi~IytIg~~~ 329 (374) +..++.. .||++.+|..|. T Consensus 194 La~Ela~~~~~gIrVn~v~PG~ 215 (272) T 1yb1_A 194 LTDELAALQITGVKTTCLCPNF 215 (272) T ss_dssp HHHHHHHTTCTTEEEEEEEETH T ss_pred HHHHHHHHCCCCEEEEEEECCC T ss_conf 9999776569987999996498 No 72 >2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens} Probab=37.93 E-value=15 Score=14.55 Aligned_cols=39 Identities=21% Similarity=0.083 Sum_probs=30.2 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 864123686299999999999999999999999999999 Q gi|254780934|r 9 RNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMK 47 (374) Q Consensus 9 ~~f~~~~~G~vaiifAl~l~~ll~~~g~avD~~~~~~~k 47 (374) ++--+...|..++++.|+++.+++++.++|-++..-..| T Consensus 41 ~~~p~~~d~~~~~lYIL~vmgffgff~~gImlsyiRSKk 79 (138) T 2k21_A 41 RRSPRSGDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKK 79 (138) T ss_dssp GSCSCCTTCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 668999998522679999999999999999998778875 No 73 >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogenase; structural genomics, short-chain dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Probab=37.54 E-value=16 Score=14.52 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=14.4 Q ss_pred HHHHHHHCCCEEEEEEECC Q ss_conf 9999997898799999248 Q gi|254780934|r 311 YCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 311 ~~~~~k~~gi~IytIg~~~ 329 (374) ++.++...||+|.+|..|. T Consensus 169 la~el~~~gIrVN~V~PG~ 187 (267) T 2gdz_A 169 LAANLMNSGVRLNAICPGF 187 (267) T ss_dssp HHHHHHTCCEEEEEEEESC T ss_pred HHHHHCCCCEEEEEEECCC T ss_conf 9998578885999996188 No 74 >3ijr_A Oxidoreductase, short chain dehydrogenase/reductase family; structural genomics, infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Probab=36.38 E-value=16 Score=14.41 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=16.7 Q ss_pred HHHHHHHHHHCCCEEEEEEECC Q ss_conf 9999999997898799999248 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~ 329 (374) ++.++.++...||++.+|.-|. T Consensus 207 tr~lA~Ela~~gIrVN~I~PG~ 228 (291) T 3ijr_A 207 TRSLSQSLVQKGIRVNGVAPGP 228 (291) T ss_dssp HHHHHHHHGGGTCEEEEEEECS T ss_pred HHHHHHHHHHCCEEEEEEECCC T ss_conf 9999998633190899996488 No 75 >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Probab=35.92 E-value=17 Score=14.36 Aligned_cols=21 Identities=24% Similarity=0.102 Sum_probs=16.3 Q ss_pred HHHHHHHHHCCCEEEEEEECC Q ss_conf 999999997898799999248 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~ 329 (374) +.++.++...||++.+|..|. T Consensus 171 k~lA~el~~~gIrVN~I~PG~ 191 (254) T 2wsb_A 171 RALAAEWAGRGVRVNALAPGY 191 (254) T ss_dssp HHHHHHHGGGTEEEEEEEECC T ss_pred HHHHHHHCCCCCEEEEEEECC T ss_conf 999999630292899996087 No 76 >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Probab=34.53 E-value=17 Score=14.23 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=26.4 Q ss_pred HHHHHHHCCCEEEEEEECCCCCHH-----------HHHHHCCCCCEEEECCHHHHHHHHHHHHHH Q ss_conf 999999789879999924822278-----------899823898179838989999999999984 Q gi|254780934|r 311 YCNEAKKRGAIVYAIGIRVIRSHE-----------FLRACASPNSFYLVENPHSMYDAFSHIGKD 364 (374) Q Consensus 311 ~~~~~k~~gi~IytIg~~~~~~~~-----------~L~~~As~~~~~~a~~~~~L~~~f~~I~~~ 364 (374) ++.++...||++.+|..|.-.... ..+... .++. -+++|+.++.--+..+ T Consensus 185 la~El~~~gIrVn~V~PG~i~T~~~~~~~~~~~~~~~~~~~-~~r~---~~pedvA~~v~fL~s~ 245 (272) T 2nwq_A 185 LRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARYDKTYA-GAHP---IQPEDIAETIFWIMNQ 245 (272) T ss_dssp HHTTCTTSCCEEEEEEECSBC---------------------CCCC---BCHHHHHHHHHHHHTS T ss_pred HHHHHCCCCEEEEEEECCCCCCHHHHHCCCCHHHHHHHCCC-CCCC---CCHHHHHHHHHHHHCC T ss_conf 99985746839989603977571343106431899984087-8898---3999999999999579 No 77 >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum tls} SCOP: c.2.1.2 Probab=33.79 E-value=18 Score=14.15 Aligned_cols=21 Identities=10% Similarity=-0.141 Sum_probs=15.8 Q ss_pred HHHHHHHHHCCCEEEEEEECC Q ss_conf 999999997898799999248 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~ 329 (374) ..++.+++..||++.+|.-|. T Consensus 170 ~~la~e~~~~gIrVn~V~PG~ 190 (244) T 2bd0_A 170 ETMRLYARKCNVRITDVQPGA 190 (244) T ss_dssp HHHHHHHTTTTEEEEEEEECC T ss_pred HHHHHHHCCCCCEEEEEECCC T ss_conf 999998543494899997698 No 78 >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* Probab=33.76 E-value=9.8 Score=15.73 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=37.1 Q ss_pred CHHHHHHHHHHHHCCCEEEEEEEC-CCCCHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHH Q ss_conf 068999999999789879999924-82227889982389817983898999999999998420 Q gi|254780934|r 305 DQQSLYYCNEAKKRGAIVYAIGIR-VIRSHEFLRACASPNSFYLVENPHSMYDAFSHIGKDIV 366 (374) Q Consensus 305 ~~~~~~~~~~~k~~gi~IytIg~~-~~~~~~~L~~~As~~~~~~a~~~~~L~~~f~~I~~~i~ 366 (374) ......+++.++++||-+..|.+. .|.++..||-|-+..+ .-++-+.+.++|+++.+++. T Consensus 356 ~~~~~~~~~~L~~~Gi~v~~i~~Ptvp~g~~rlR~~~~a~h--T~edId~~v~~l~~v~~~lg 416 (427) T 2w8t_A 356 QEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEH--TPAQIQTVLGMFQAAGRAVG 416 (427) T ss_dssp HHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTC--CHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCC--CHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999848945976789988999725999847669--99999999999999999829 No 79 >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, antibiotic biosynthesis, NADPH; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Probab=31.93 E-value=19 Score=13.97 Aligned_cols=52 Identities=15% Similarity=0.038 Sum_probs=28.4 Q ss_pred HHHHHHHHHCCCEEEEEEECCCC--------CH---HHHHHHCCCCCEEEECCHHHHHHHHHHHHH Q ss_conf 99999999789879999924822--------27---889982389817983898999999999998 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRVIR--------SH---EFLRACASPNSFYLVENPHSMYDAFSHIGK 363 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~~~--------~~---~~L~~~As~~~~~~a~~~~~L~~~f~~I~~ 363 (374) +.++.++...||++.+|.-|.-. .. +..++.-..+++ -+++|+.++.--+.. T Consensus 167 ~~la~El~~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~---~~pediA~~v~fL~s 229 (247) T 2jah_A 167 ETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMYEQRISQIRK---LQAQDIAEAVRYAVT 229 (247) T ss_dssp HHHHHHHGGGTCEEEEEEECSBSSSGGGGCCCHHHHHHHHHHTTTSCC---BCHHHHHHHHHHHHH T ss_pred HHHHHHHCHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCC---CCHHHHHHHHHHHHC T ss_conf 999998450092999997188977331126865789999813898897---699999999999985 No 80 >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Probab=30.40 E-value=21 Score=13.81 Aligned_cols=21 Identities=19% Similarity=-0.054 Sum_probs=15.0 Q ss_pred HHHHHHHHHCCCEEEEEEECC Q ss_conf 999999997898799999248 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~ 329 (374) +.++.++...||++.+|.-|. T Consensus 189 r~lA~ela~~gIrVN~I~PG~ 209 (302) T 1w6u_A 189 KSLAAEWGKYGMRFNVIQPGP 209 (302) T ss_dssp HHHHHHHGGGTEEEEEEEECC T ss_pred HHHHHHHHHHCCEEEEEEECC T ss_conf 999999765694686461086 No 81 >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Probab=30.06 E-value=21 Score=13.78 Aligned_cols=22 Identities=18% Similarity=-0.020 Sum_probs=16.7 Q ss_pred HHHHHHHHHHCCCEEEEEEECC Q ss_conf 9999999997898799999248 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~ 329 (374) ++.++.++...||++.+|..|. T Consensus 183 tr~lA~e~~~~gIrVN~V~PG~ 204 (265) T 1h5q_A 183 VKGLAAEWASAGIRVNALSPGY 204 (265) T ss_dssp HHHHHHHHGGGTEEEEEEEECS T ss_pred HHHHHHHHCCCCCEEEEEECCC T ss_conf 9999999630190899995387 No 82 >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Probab=28.43 E-value=22 Score=13.61 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=29.5 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCC--------CHHHHHHHCC--C-CCEEEECCHHHHHHHHHHHHH Q ss_conf 999999999789879999924822--------2788998238--9-817983898999999999998 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRVIR--------SHEFLRACAS--P-NSFYLVENPHSMYDAFSHIGK 363 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~~~--------~~~~L~~~As--~-~~~~~a~~~~~L~~~f~~I~~ 363 (374) ++.++.++...||++.+|..|.-. .++..+.... + ++ .-+++|+.++.--++. T Consensus 171 tk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~e~~~~~~~~~pl~R---~~~pediA~~v~fL~S 234 (256) T 3gaf_A 171 TRNIAFDVGPMGIRVNAIAPGAIKTDALATVLTPEIERAMLKHTPLGR---LGEAQDIANAALFLCS 234 (256) T ss_dssp HHHHHHHHGGGTEEEEEEEECCBCCHHHHHHCCHHHHHHHHTTCTTSS---CBCHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHCEEEEEEEECCCCCHHHHCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHC T ss_conf 999999960429299999719797713320289999999985799889---8299999999999958 No 83 >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Probab=27.95 E-value=23 Score=13.56 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=28.5 Q ss_pred HHHHHHHHHCCCEEEEEEECCCC-------CHHHHHHHCC--C-CCEEEECCHHHHHHHHHHHH Q ss_conf 99999999789879999924822-------2788998238--9-81798389899999999999 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRVIR-------SHEFLRACAS--P-NSFYLVENPHSMYDAFSHIG 362 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~~~-------~~~~L~~~As--~-~~~~~a~~~~~L~~~f~~I~ 362 (374) +.++.++...||++.+|..|.-. .++..+.... | ++ .-+++|+.++.--+. T Consensus 189 r~lA~Ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~PlgR---~~~pedvA~~v~fL~ 249 (270) T 3ftp_A 189 RALAREIGSRGITVNCVAPGFIDTDMTKGLPQEQQTALKTQIPLGR---LGSPEDIAHAVAFLA 249 (270) T ss_dssp HHHHHHHGGGTEEEEEEEECSBCSHHHHHSCHHHHHHHHTTCTTCS---CBCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCEEEEEECCCCCCHHHHCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHH T ss_conf 9999986266758999952978772222279999999985799889---989999999999994 No 84 >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier- protein) reductase, NAD; HET: NAD; 1.80A {Anaplasma phagocytophilum HZ} PDB: 3k2e_A* Probab=27.60 E-value=23 Score=13.52 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=16.7 Q ss_pred HHHHHHHHHHCCCEEEEEEECC Q ss_conf 9999999997898799999248 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~ 329 (374) ++.++.++...||++.+|..|. T Consensus 193 tr~lA~Ela~~gIrVN~IaPG~ 214 (296) T 3k31_A 193 VKYLAVDLGKQQIRVNAISAGP 214 (296) T ss_dssp HHHHHHHHHTTTEEEEEEEECC T ss_pred HHHHHHHHHHHCCCCCEEEECC T ss_conf 9999999747581401560165 No 85 >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Probab=27.04 E-value=24 Score=13.46 Aligned_cols=56 Identities=13% Similarity=0.072 Sum_probs=29.2 Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCHHHHHHH----CCCCC---EEEECCHHHHHHHHHHHHHH Q ss_conf 9999999978987999992482227889982----38981---79838989999999999984 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRVIRSHEFLRAC----ASPNS---FYLVENPHSMYDAFSHIGKD 364 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~~~~~~~L~~~----As~~~---~~~a~~~~~L~~~f~~I~~~ 364 (374) ..++.+++..||++.++......+...++.- ..... .-..-+++++.+++--++.+ T Consensus 167 ~~la~e~~~~gi~V~~~~~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~PedIA~~v~fl~s~ 229 (252) T 3h7a_A 167 QSMARELMPKNIHVAHLIIDSGVDTAWVRERREQMFGKDALANPDLLMPPAAVAGAYWQLYQQ 229 (252) T ss_dssp HHHHHHHGGGTEEEEEEEEC---------------------------CCHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 999998606588799995898738755554046665664126877781999999999999789 No 86 >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} Probab=25.86 E-value=25 Score=13.33 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=40.1 Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHC----C-----CCCEEEECCHHHHHHHHHHHHH Q ss_conf 980687788888068999999999789879999924822278899823----8-----9817983898999999999998 Q gi|254780934|r 293 FMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACA----S-----PNSFYLVENPHSMYDAFSHIGK 363 (374) Q Consensus 293 llTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~~~~~~~~~L~~~A----s-----~~~~~~a~~~~~L~~~f~~I~~ 363 (374) +=|||--+-..........++.+|+.||++ ++-+. .+.+.++.+. . .|.|-.+.+..+....|+.|.+ T Consensus 129 lTTegGlDv~~~~~~L~~~i~~Lk~~gIrV-SLFID--Pd~~qi~~A~~~Gad~IELhTG~YA~a~~~~~~~~el~~i~~ 205 (278) T 3gk0_A 129 LTTEGGLDVVGHFDAVRAACKQLADAGVRV-SLFID--PDEAQIRAAHETGAPVIELHTGRYADAHDAAEQQREFERIAT 205 (278) T ss_dssp BCSSSSBCTTTTHHHHHHHHHHHHHTTCEE-EEEEC--SCHHHHHHHHHHTCSEEEECCHHHHTCSSHHHHHHHHHHHHH T ss_pred CCCCCCEEEHHHHHHHHHHHHHHHHCCCCE-EEEEC--CCHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCHHHHHHHHH T ss_conf 455576620625999999999999749817-99836--987899998505999799723355332543200799999999 Q ss_pred H Q ss_conf 4 Q gi|254780934|r 364 D 364 (374) Q Consensus 364 ~ 364 (374) . T Consensus 206 a 206 (278) T 3gk0_A 206 G 206 (278) T ss_dssp H T ss_pred H T ss_conf 9 No 87 >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Probab=25.43 E-value=25 Score=13.28 Aligned_cols=22 Identities=9% Similarity=-0.096 Sum_probs=16.8 Q ss_pred HHHHHHHHHHCCCEEEEEEECC Q ss_conf 9999999997898799999248 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~ 329 (374) ++.++.++...||++.+|..|. T Consensus 160 tk~lA~el~~~gIrVN~I~PG~ 181 (256) T 2d1y_A 160 TRSLALDLAPLRIRVNAVAPGA 181 (256) T ss_dssp HHHHHHHHGGGTEEEEEEEECS T ss_pred HHHHHHHHHHHCEEEEEEECCC T ss_conf 9999999604291999996298 No 88 >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Probab=25.31 E-value=25 Score=13.27 Aligned_cols=21 Identities=19% Similarity=0.041 Sum_probs=15.8 Q ss_pred HHHHHHHHHCCCEEEEEEECC Q ss_conf 999999997898799999248 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~ 329 (374) +.++.++...||++.+|..|. T Consensus 185 k~lA~El~~~gIrVN~I~PG~ 205 (277) T 2rhc_B 185 KALGLELARTGITVNAVCPGF 205 (277) T ss_dssp HHHHHHHTTTEEEEEEEEECS T ss_pred HHHHHHHHHHCCEEEEEEECC T ss_conf 999999767693899985487 No 89 >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Probab=24.55 E-value=26 Score=13.18 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=16.8 Q ss_pred HHHHHHHHHHCCCEEEEEEECC Q ss_conf 9999999997898799999248 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~ 329 (374) ++.++.++...||++.+|..|. T Consensus 165 t~~lA~ela~~gIrVN~I~PG~ 186 (270) T 1yde_A 165 TKALALDESPYGVRVNCISPGN 186 (270) T ss_dssp HHHHHHHHGGGTCEEEEEEECS T ss_pred HHHHHHHHHHHCCEEEEEECCC T ss_conf 9999998523291899996098 No 90 >1bdb_A CIS-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase; NAD-dependent oxidoreductase, short-chain alcohol dehydrogenase, PCB degradation; HET: NAD; 2.00A {Pseudomonas SP} SCOP: c.2.1.2 Probab=24.35 E-value=26 Score=13.16 Aligned_cols=10 Identities=20% Similarity=0.106 Sum_probs=5.2 Q ss_pred CCEEEEEEEC Q ss_conf 9879999924 Q gi|254780934|r 319 GAIVYAIGIR 328 (374) Q Consensus 319 gi~IytIg~~ 328 (374) +|+|.+|..| T Consensus 176 ~IrVN~V~PG 185 (277) T 1bdb_A 176 YVRVNGVGSG 185 (277) T ss_dssp TCEEEEEEEC T ss_pred CCEEEEEEEC T ss_conf 8526268318 No 91 >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Probab=24.17 E-value=27 Score=13.14 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=15.6 Q ss_pred HHHHHHHHHCCCEEEEEEECC Q ss_conf 999999997898799999248 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~ 329 (374) +.++.++...||++.+|..|. T Consensus 174 ~~lA~el~~~gIrVN~I~PG~ 194 (278) T 1spx_A 174 RNTAIDLIQHGIRVNSISPGL 194 (278) T ss_dssp HHHHHHHGGGTCEEEEEEECC T ss_pred HHHHHHHCCCCEEEEEEECCC T ss_conf 999999541091999996288 No 92 >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovarkurstaki str} Probab=24.05 E-value=27 Score=13.12 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=27.6 Q ss_pred HHHHHHHHHCCCEEEEEEECCCC---C----HHHHHHHCC--C-CCEEEECCHHHHHHHHHHHHH Q ss_conf 99999999789879999924822---2----788998238--9-817983898999999999998 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRVIR---S----HEFLRACAS--P-NSFYLVENPHSMYDAFSHIGK 363 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~~~---~----~~~L~~~As--~-~~~~~a~~~~~L~~~f~~I~~ 363 (374) +.++.+....||++.+|.-|.-. . ++..+.... | ++ .-+++|+.++..-++. T Consensus 173 k~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R---~g~pediA~~v~fL~S 234 (264) T 3i4f_A 173 KTVAYEEAEYGITANMVCPGDIIGEMKEATIQEARQLKEHNTPIGR---SGTGEDIARTISFLCE 234 (264) T ss_dssp HHHHHHHGGGTEEEEEEEECCCCGGGGSCCHHHHHHC--------C---CCCHHHHHHHHHHHHS T ss_pred HHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHC T ss_conf 9999985711849999963889685431137889999971899889---8499999999999958 No 93 >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Probab=23.88 E-value=27 Score=13.10 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=17.0 Q ss_pred HHHHHHHHHHCCCEEEEEEECC Q ss_conf 9999999997898799999248 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~ 329 (374) ++.++.++...||+|.+|..|. T Consensus 170 tk~lA~el~~~gIrVN~V~PG~ 191 (265) T 3lf2_A 170 VRSMAFEFAPKGVRVNGILIGL 191 (265) T ss_dssp HHHHHHHHGGGTEEEEEEEECS T ss_pred HHHHHHHHHHHCCEEEEEEECC T ss_conf 9999999745594899886687 No 94 >1xhl_A Short-chain dehydrogenase/reductase family member (5L265), putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Probab=22.68 E-value=29 Score=12.96 Aligned_cols=21 Identities=10% Similarity=0.034 Sum_probs=16.0 Q ss_pred HHHHHHHHHCCCEEEEEEECC Q ss_conf 999999997898799999248 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~ 329 (374) +.++.++...||++.+|.-|. T Consensus 192 k~lA~ela~~gIrVN~I~PG~ 212 (297) T 1xhl_A 192 RCTAIDLIQHGVRVNSVSPGA 212 (297) T ss_dssp HHHHHHHGGGTCEEEEEEECC T ss_pred HHHHHHHHHHCEEEEEEECCC T ss_conf 999998531092999996188 No 95 >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, lipid metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Probab=21.96 E-value=29 Score=12.87 Aligned_cols=51 Identities=12% Similarity=0.226 Sum_probs=27.0 Q ss_pred HHHHHHHHHCCCEEEEEEECCCC---C----HHHHHHHCC--C-CCEEEECCHHHHHHHHHHHH Q ss_conf 99999999789879999924822---2----788998238--9-81798389899999999999 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRVIR---S----HEFLRACAS--P-NSFYLVENPHSMYDAFSHIG 362 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~~~---~----~~~L~~~As--~-~~~~~a~~~~~L~~~f~~I~ 362 (374) +.++.++...||++.+|.-|.-. . ++..+.... | ++ .-+++|+.++.--++ T Consensus 177 ~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R---~~~pedvA~~v~fL~ 237 (264) T 2pd6_A 177 QTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVVDKITEMIPMGH---LGDPEDVADVVAFLA 237 (264) T ss_dssp HHHHHHHGGGTEEEEEEEECSBCSCC----------CTGGGCTTCS---CBCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCEEEEEEECCCCCCCCHHCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHH T ss_conf 9999996032919999962989780022059999999984699889---839999999999995 No 96 >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Probab=21.83 E-value=30 Score=12.86 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=16.8 Q ss_pred HHHHHHHHHHCCCEEEEEEECC Q ss_conf 9999999997898799999248 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~ 329 (374) ++.++.++...||++.+|..|. T Consensus 186 tr~lA~e~~~~gIrVN~V~PG~ 207 (269) T 3gk3_A 186 TKTLALETAKRGITVNTVSPGY 207 (269) T ss_dssp HHHHHHHHGGGTEEEEEEEECS T ss_pred HHHHHHHHHHCCCEEEEECCCC T ss_conf 9999998865195898763485 No 97 >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Probab=21.79 E-value=30 Score=12.85 Aligned_cols=18 Identities=22% Similarity=-0.117 Sum_probs=11.6 Q ss_pred HHHHHHHCCCEEEEEEECC Q ss_conf 9999997898799999248 Q gi|254780934|r 311 YCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 311 ~~~~~k~~gi~IytIg~~~ 329 (374) ++.++. .+|++.+|..|. T Consensus 201 lA~ela-~~irVN~I~PG~ 218 (279) T 3ctm_A 201 LAIEWA-PFARVNTISPGY 218 (279) T ss_dssp HHHHTT-TTCEEEEEEECS T ss_pred HHHHHC-CCCEEEEEECCC T ss_conf 999978-994899996398 No 98 >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Probab=21.70 E-value=30 Score=12.84 Aligned_cols=21 Identities=19% Similarity=0.017 Sum_probs=16.2 Q ss_pred HHHHHHHHHCCCEEEEEEECC Q ss_conf 999999997898799999248 Q gi|254780934|r 309 LYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 309 ~~~~~~~k~~gi~IytIg~~~ 329 (374) +.++.++...||++.+|..|. T Consensus 183 r~lA~e~~~~gIrVN~V~PG~ 203 (273) T 1ae1_A 183 KSLACEWAKDNIRVNSVAPGV 203 (273) T ss_dssp HHHHHHHGGGTEEEEEEEECS T ss_pred HHHHHHHCCCCCEEEEEEECC T ss_conf 999999652293899996098 No 99 >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Probab=21.56 E-value=30 Score=12.83 Aligned_cols=22 Identities=14% Similarity=0.037 Sum_probs=16.6 Q ss_pred HHHHHHHHHHCCCEEEEEEECC Q ss_conf 9999999997898799999248 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~ 329 (374) ++.++.++...||++.+|.-|. T Consensus 173 tk~lA~el~~~gIrVN~V~PG~ 194 (280) T 1xkq_A 173 TRSTAIDLAKFGIRVNSVSPGM 194 (280) T ss_dssp HHHHHHHHHTTTCEEEEEEECC T ss_pred HHHHHHHHHHHCEEEEEEEECC T ss_conf 9999999603392999996087 No 100 >2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A Probab=20.78 E-value=31 Score=12.73 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=26.3 Q ss_pred EEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEE Q ss_conf 2799980687788888068999999999789879999 Q gi|254780934|r 289 KIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAI 325 (374) Q Consensus 289 k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytI 325 (374) ..||||-|+.............+++.+|++|.++.|+ T Consensus 149 g~IvL~Hd~~~~~~~t~~aL~~li~~lk~~Gy~fvtl 185 (216) T 2c71_A 149 GTIILLHDVQPEPHPTPEALDIIIPTLKSRGYEFVTL 185 (216) T ss_dssp TBEEEEESCCSSSCCHHHHHHHHHHHHHHTTCEECCH T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEH T ss_conf 9499977999972069999999999999789999888 No 101 >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1G07440, reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Probab=20.55 E-value=32 Score=12.70 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=16.4 Q ss_pred HHHHHHHHHHCCCEEEEEEECC Q ss_conf 9999999997898799999248 Q gi|254780934|r 308 SLYYCNEAKKRGAIVYAIGIRV 329 (374) Q Consensus 308 ~~~~~~~~k~~gi~IytIg~~~ 329 (374) ++.++.++...||++.+|.-|. T Consensus 175 tr~lA~e~~~~gIrVN~I~PG~ 196 (266) T 1xq1_A 175 ARNLACEWASDGIRANAVAPAV 196 (266) T ss_dssp HHHHHHHHGGGTCEEEEEECCS T ss_pred HHHHHHHHCCCCEEEEEEECCC T ss_conf 9999998560181899996198 Done!