RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter asiaticus str. psy62] (374 letters) >gnl|CDD|128622 smart00327, VWA, von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods. Length = 177 Score = 65.9 bits (161), Expect = 2e-11 Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 27/198 (13%) Query: 172 LDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIE 231 LD++ +LD S SM + + A + + ++E++ + PD + V GLVTFS+ Sbjct: 2 LDVVFLLDGSGSMGP------NRFEKAKEFVLKLVEQLDIGPDGDRV---GLVTFSDDAT 52 Query: 232 EFFLLEWG--VSHLQRKIKYLSKF-GVSTNSTPGLKYAYNQIFD-MQGMRQHCNTEDANY 287 F L L + LS G TN L+YA +F G R Sbjct: 53 VLFPLNDSRSKDALLEALASLSYKLGGGTNLGAALQYALENLFSKSAGSR-------RGA 105 Query: 288 KKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYL 347 K+++ +TDGE+ + ++ E K+ G V+ +G+ E L+ AS Sbjct: 106 PKVLILITDGESNDGGDLLKAA---KELKRSGVKVFVVGVGNDVDEEELKKLASAPGGVY 162 Query: 348 VENPHSMYDAFSHIGKDI 365 V P + F + + Sbjct: 163 VFLP----ELFDLLIDLL 176 >gnl|CDD|163263 TIGR03436, acidobact_VWFA, VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196. Length = 296 Score = 39.6 bits (93), Expect = 0.001 Identities = 37/185 (20%), Positives = 64/185 (34%), Gaps = 34/185 (18%) Query: 156 MPITSSVKVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDV 215 I S +TD L + +V+D S SM + +D A + L+ V L P+ Sbjct: 41 QTIAS---FRRETDLPLTVGLVIDTSGSMRN-------DLDRARAAAIRFLKTV-LRPN- 88 Query: 216 NNVVQSGLVTFSNKIEEFF-------LLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYN 268 + +VTF+ ++ LLE ++ L+ ++ + G Y+ Sbjct: 89 ---DRVFVVTFNTRLRLLQDFTSDPRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYD 145 Query: 269 QIF-DMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKR----GAIVY 323 I + K +IV +DG D +S A +Y Sbjct: 146 AITLAALEQLANALAGIPGRKALIVI-SDG------GDNRSRDTLERAIDAAQRADVAIY 198 Query: 324 AIGIR 328 +I R Sbjct: 199 SIDAR 203 >gnl|CDD|149078 pfam07811, TadE, TadE-like protein. The members of this family are similar to a region of the protein product of the bacterial tadE locus. In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria. All tad loci but TadA have putative transmembrane regions, and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues. Length = 43 Score = 34.3 bits (80), Expect = 0.048 Identities = 11/34 (32%), Positives = 21/34 (61%) Query: 17 GGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVL 50 G + A+ LP++ L+L I+E+ +F+ + VL Sbjct: 1 GAAAVEFALVLPVLLLLLFGIVELGRLFYARQVL 34 >gnl|CDD|178389 PLN02792, PLN02792, oxidoreductase. Length = 536 Score = 30.7 bits (69), Expect = 0.71 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Query: 213 PDVNNVVQSGLV-TFSNKIEEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYN-QI 270 P++ ++ LV N ++E FLL W H+++ +G + PG Y Y+ Q+ Sbjct: 47 PEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQV 106 Query: 271 FDMQG 275 D G Sbjct: 107 KDQVG 111 >gnl|CDD|173508 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional. Length = 1419 Score = 30.4 bits (68), Expect = 0.74 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 284 DANYKKIIVFMTDGE---NLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACA 340 D K + V + D E N+ EDQ S KK ++ + ++ + S +FL Sbjct: 17 DGLVKTMSVLLRDNECAFNIEENEDQNSKDQLPCDKKDSEMIDCL-MQKLTSKKFLVEKE 75 Query: 341 SPNSFYLVEN 350 + NSFYLV+N Sbjct: 76 TKNSFYLVDN 85 >gnl|CDD|139237 PRK12802, PRK12802, flagellin; Provisional. Length = 282 Score = 28.7 bits (64), Expect = 2.9 Identities = 10/30 (33%), Positives = 18/30 (60%) Query: 175 MIVLDVSRSMESFFDSSITKIDMAIKSINA 204 +I S + E+ ++IT ID A+++IN Sbjct: 179 LITGADSAAAETNAQAAITAIDAALQTINT 208 >gnl|CDD|180127 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed. Length = 631 Score = 28.5 bits (65), Expect = 3.2 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 6/37 (16%) Query: 265 YAYNQIFDMQ-----GMRQHCNTEDANYKKIIVFMTD 296 A +I D+ G + ED Y KII+ MTD Sbjct: 460 LANEEIHDIIVAIGIGPGDSFDLEDLRYGKIII-MTD 495 >gnl|CDD|185589 PTZ00386, PTZ00386, formyl tetrahydrofolate synthetase; Provisional. Length = 625 Score = 27.9 bits (62), Expect = 4.1 Identities = 11/26 (42%), Positives = 16/26 (61%) Query: 230 IEEFFLLEWGVSHLQRKIKYLSKFGV 255 E + G+S+LQR I+ + KFGV Sbjct: 413 KENLEAVRKGLSNLQRHIQNIRKFGV 438 >gnl|CDD|148157 pfam06381, DUF1073, Protein of unknown function (DUF1073). This family consists of several hypothetical bacterial proteins. The function of this family is unknown. Length = 361 Score = 27.7 bits (62), Expect = 5.8 Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 4/58 (6%) Query: 229 KIEEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQ-IFDMQGMRQHCNTEDA 285 K F WG S LQ L +TNS L + + + G+R Sbjct: 161 KPAYNF---WGDSVLQSLYDALKAADRTTNSAAQLVFKARLTVIKVDGLRALLAAGGG 215 >gnl|CDD|180171 PRK05627, PRK05627, bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed. Length = 305 Score = 27.4 bits (62), Expect = 6.8 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 12/59 (20%) Query: 204 AMLEEVKLIPDVNNVVQSGLVTFSNKIEEFF-------LLEWGVSHLQRKIKYLSKFGV 255 A+L + I + S ++TF E F L + L+ K + L++ GV Sbjct: 31 ALLARAREIARERGLP-SVVMTFEPHPREVFAPDKAPARL----TPLRDKAELLAELGV 84 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.323 0.137 0.403 Gapped Lambda K H 0.267 0.0680 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,952,882 Number of extensions: 374445 Number of successful extensions: 748 Number of sequences better than 10.0: 1 Number of HSP's gapped: 745 Number of HSP's successfully gapped: 23 Length of query: 374 Length of database: 5,994,473 Length adjustment: 95 Effective length of query: 279 Effective length of database: 3,941,713 Effective search space: 1099737927 Effective search space used: 1099737927 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 58 (26.2 bits)