RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780934|ref|YP_003065347.1| hypothetical protein
CLIBASIA_04165 [Candidatus Liberibacter asiaticus str. psy62]
         (374 letters)



>gnl|CDD|128622 smart00327, VWA, von Willebrand factor (vWF) type A domain.  VWA
           domains in extracellular eukaryotic proteins mediate
           adhesion via metal ion-dependent adhesion sites (MIDAS).
           Intracellular VWA domains and homologues in prokaryotes
           have recently been identified. The proposed VWA domains
           in integrin beta subunits have recently been
           substantiated using sequence-based methods.
          Length = 177

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 27/198 (13%)

Query: 172 LDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIE 231
           LD++ +LD S SM         + + A + +  ++E++ + PD + V   GLVTFS+   
Sbjct: 2   LDVVFLLDGSGSMGP------NRFEKAKEFVLKLVEQLDIGPDGDRV---GLVTFSDDAT 52

Query: 232 EFFLLEWG--VSHLQRKIKYLSKF-GVSTNSTPGLKYAYNQIFD-MQGMRQHCNTEDANY 287
             F L        L   +  LS   G  TN    L+YA   +F    G R          
Sbjct: 53  VLFPLNDSRSKDALLEALASLSYKLGGGTNLGAALQYALENLFSKSAGSR-------RGA 105

Query: 288 KKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYL 347
            K+++ +TDGE+    +  ++     E K+ G  V+ +G+      E L+  AS      
Sbjct: 106 PKVLILITDGESNDGGDLLKAA---KELKRSGVKVFVVGVGNDVDEEELKKLASAPGGVY 162

Query: 348 VENPHSMYDAFSHIGKDI 365
           V  P    + F  +   +
Sbjct: 163 VFLP----ELFDLLIDLL 176


>gnl|CDD|163263 TIGR03436, acidobact_VWFA, VWFA-related Acidobacterial domain.
           Members of this family are bacterial domains that
           include a region related to the von Willebrand factor
           type A (VWFA) domain (pfam00092). These domains are
           restricted to, and have undergone a large paralogous
           family expansion in, the Acidobacteria, including
           Solibacter usitatus and Acidobacterium capsulatum ATCC
           51196.
          Length = 296

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 37/185 (20%), Positives = 64/185 (34%), Gaps = 34/185 (18%)

Query: 156 MPITSSVKVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDV 215
             I S      +TD  L + +V+D S SM +        +D A  +    L+ V L P+ 
Sbjct: 41  QTIAS---FRRETDLPLTVGLVIDTSGSMRN-------DLDRARAAAIRFLKTV-LRPN- 88

Query: 216 NNVVQSGLVTFSNKIEEFF-------LLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYN 268
               +  +VTF+ ++           LLE  ++ L+  ++       +     G    Y+
Sbjct: 89  ---DRVFVVTFNTRLRLLQDFTSDPRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYD 145

Query: 269 QIF-DMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKR----GAIVY 323
            I         +        K +IV  +DG       D +S      A          +Y
Sbjct: 146 AITLAALEQLANALAGIPGRKALIVI-SDG------GDNRSRDTLERAIDAAQRADVAIY 198

Query: 324 AIGIR 328
           +I  R
Sbjct: 199 SIDAR 203


>gnl|CDD|149078 pfam07811, TadE, TadE-like protein.  The members of this family
          are similar to a region of the protein product of the
          bacterial tadE locus. In various bacterial species, the
          tad locus is closely linked to flp-like genes, which
          encode proteins required for the production of pili
          involved in adherence to surfaces. It is thought that
          the tad loci encode proteins that act to assemble or
          export an Flp pilus in various bacteria. All tad loci
          but TadA have putative transmembrane regions, and in
          fact the region in question is this family has a high
          proportion of hydrophobic amino acid residues.
          Length = 43

 Score = 34.3 bits (80), Expect = 0.048
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 17 GGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVL 50
          G   +  A+ LP++ L+L  I+E+  +F+ + VL
Sbjct: 1  GAAAVEFALVLPVLLLLLFGIVELGRLFYARQVL 34


>gnl|CDD|178389 PLN02792, PLN02792, oxidoreductase.
          Length = 536

 Score = 30.7 bits (69), Expect = 0.71
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 213 PDVNNVVQSGLV-TFSNKIEEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYN-QI 270
           P++ ++    LV    N ++E FLL W   H+++       +G +    PG  Y Y+ Q+
Sbjct: 47  PEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQV 106

Query: 271 FDMQG 275
            D  G
Sbjct: 107 KDQVG 111


>gnl|CDD|173508 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
          Length = 1419

 Score = 30.4 bits (68), Expect = 0.74
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 284 DANYKKIIVFMTDGE---NLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACA 340
           D   K + V + D E   N+   EDQ S       KK   ++  + ++ + S +FL    
Sbjct: 17  DGLVKTMSVLLRDNECAFNIEENEDQNSKDQLPCDKKDSEMIDCL-MQKLTSKKFLVEKE 75

Query: 341 SPNSFYLVEN 350
           + NSFYLV+N
Sbjct: 76  TKNSFYLVDN 85


>gnl|CDD|139237 PRK12802, PRK12802, flagellin; Provisional.
          Length = 282

 Score = 28.7 bits (64), Expect = 2.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 175 MIVLDVSRSMESFFDSSITKIDMAIKSINA 204
           +I    S + E+   ++IT ID A+++IN 
Sbjct: 179 LITGADSAAAETNAQAAITAIDAALQTINT 208


>gnl|CDD|180127 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.
          Length = 631

 Score = 28.5 bits (65), Expect = 3.2
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 6/37 (16%)

Query: 265 YAYNQIFDMQ-----GMRQHCNTEDANYKKIIVFMTD 296
            A  +I D+      G     + ED  Y KII+ MTD
Sbjct: 460 LANEEIHDIIVAIGIGPGDSFDLEDLRYGKIII-MTD 495


>gnl|CDD|185589 PTZ00386, PTZ00386, formyl tetrahydrofolate synthetase;
           Provisional.
          Length = 625

 Score = 27.9 bits (62), Expect = 4.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 230 IEEFFLLEWGVSHLQRKIKYLSKFGV 255
            E    +  G+S+LQR I+ + KFGV
Sbjct: 413 KENLEAVRKGLSNLQRHIQNIRKFGV 438


>gnl|CDD|148157 pfam06381, DUF1073, Protein of unknown function (DUF1073).  This
           family consists of several hypothetical bacterial
           proteins. The function of this family is unknown.
          Length = 361

 Score = 27.7 bits (62), Expect = 5.8
 Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 4/58 (6%)

Query: 229 KIEEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQ-IFDMQGMRQHCNTEDA 285
           K    F   WG S LQ     L     +TNS   L +     +  + G+R        
Sbjct: 161 KPAYNF---WGDSVLQSLYDALKAADRTTNSAAQLVFKARLTVIKVDGLRALLAAGGG 215


>gnl|CDD|180171 PRK05627, PRK05627, bifunctional riboflavin kinase/FMN
           adenylyltransferase; Reviewed.
          Length = 305

 Score = 27.4 bits (62), Expect = 6.8
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 204 AMLEEVKLIPDVNNVVQSGLVTFSNKIEEFF-------LLEWGVSHLQRKIKYLSKFGV 255
           A+L   + I     +  S ++TF     E F        L    + L+ K + L++ GV
Sbjct: 31  ALLARAREIARERGLP-SVVMTFEPHPREVFAPDKAPARL----TPLRDKAELLAELGV 84


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,952,882
Number of extensions: 374445
Number of successful extensions: 748
Number of sequences better than 10.0: 1
Number of HSP's gapped: 745
Number of HSP's successfully gapped: 23
Length of query: 374
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 279
Effective length of database: 3,941,713
Effective search space: 1099737927
Effective search space used: 1099737927
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.2 bits)