RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780934|ref|YP_003065347.1| hypothetical protein
CLIBASIA_04165 [Candidatus Liberibacter asiaticus str. psy62]
(374 letters)
>2odp_A Complement C2; C3/C5 convertase, complement serine protease, human
complement system, glycoprotein, SP, VWFA, hydrolase;
HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A*
2i6s_A*
Length = 509
Score = 76.5 bits (187), Expect = 9e-15
Identities = 33/226 (14%), Positives = 81/226 (35%), Gaps = 28/226 (12%)
Query: 163 KVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSG 222
K+ Q L++ ++LD S+S+ + +S + M++ + +V
Sbjct: 1 KIQIQRSGHLNLYLLLDASQSVSE------NDFLIFKESASLMVDRIFSFEINVSV---A 51
Query: 223 LVTFSNKIE-EFFLLEWGVSHLQRKIKYLSKF-------GVSTNSTPGLKYAYNQIFDMQ 274
++TF+++ + +L + I L G TN+ L Y + +
Sbjct: 52 IITFASEPKVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQM 111
Query: 275 GMRQHCNTEDANYKKIIVFMTD------GENLSTKEDQQSLYYCNEAKKRGAIVYAIGI- 327
+ + I+ +TD G + + + + N+ + +YAIG+
Sbjct: 112 RLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVG 171
Query: 328 RVIRSHEFLRACAS----PNSFYLVENPHSMYDAFSHIGKDIVTKR 369
++ L S +++++ +++ F H+
Sbjct: 172 KLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLDVSKLTD 217
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A
domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Length = 223
Score = 69.2 bits (168), Expect = 1e-12
Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 34/221 (15%)
Query: 163 KVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSG 222
K+ +++ +VLD S S+ + A KS+ ++E+V G
Sbjct: 7 KIVLDPSGSMNIYLVLDGSDSI------GASNFTGAKKSLVNLIEKVASYGVKPRY---G 57
Query: 223 LVTFSNKIEEFFLL--------EWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQ 274
LVT++ + + + +W L K TN+ L+ Y+ +
Sbjct: 58 LVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPD 117
Query: 275 GMRQHCNTEDANYKKIIVFMTDGEN----------LSTKEDQQSLYYCNEAKKRGAIVYA 324
+ + +I+ MTDG + ++ ++ VY
Sbjct: 118 DVP---PEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYV 174
Query: 325 IGIRVIRSHEFLRACAS----PNSFYLVENPHSMYDAFSHI 361
G+ + + + A AS + V++ ++ D F +
Sbjct: 175 FGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQM 215
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 63.0 bits (152), Expect = 1e-10
Identities = 32/218 (14%), Positives = 75/218 (34%), Gaps = 28/218 (12%)
Query: 172 LDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIE 231
+++ +VLD S S+ + + A K + ++E+V GLVT++ +
Sbjct: 2 MNIYLVLDGSDSIGA------SNFTGAKKVLVNLIEKVASYGVKPRY---GLVTYATYPK 52
Query: 232 EFFLL----EWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTED-AN 286
+ + + +++ ++ S K A ++ M E
Sbjct: 53 IWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNR 112
Query: 287 YKKIIVFMTDGENLST----------KEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFL 336
+ +I+ MTDG + ++ ++ VY G+ + + +
Sbjct: 113 TRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNI 172
Query: 337 RACASP----NSFYLVENPHSMYDAFSHIGKDIVTKRI 370
A AS V++ + D F + + + +
Sbjct: 173 NALASKKDNEQHVCKVKDMECLEDVFYQMIDESQSLSL 210
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting;
1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A
1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A
1u0o_C
Length = 202
Score = 62.6 bits (151), Expect = 1e-10
Identities = 24/200 (12%), Positives = 62/200 (31%), Gaps = 22/200 (11%)
Query: 172 LDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIE 231
LD++ +LD S + + ++ + M+E +++ V +V + +
Sbjct: 14 LDLVFLLDGSSRLSE------AEFEVLKAFVVDMMERLRVSQKWVRV---AVVEYHDGSH 64
Query: 232 EFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKII 291
+ L+ + + + + + +
Sbjct: 65 AYIGLKDRKRPSELRRIASQVKYAGSQVAST----SEVLKYTLFQIFSKIDRPEASRIAL 120
Query: 292 VFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACAS---PNSFYLV 348
+ M E + + + Y KK+ IV +GI + + +R N +++
Sbjct: 121 LLMASQE--PQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVL 178
Query: 349 ENPHSMYDAFSHIGKDIVTK 368
+ D +IV+
Sbjct: 179 SS----VDELEQQRDEIVSY 194
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement system, convertase, complement alternate
pathway, complement pathway; HET: NAG P6G; 2.20A {Homo
sapiens} PDB: 3hs0_D* 2ok5_A*
Length = 741
Score = 60.3 bits (145), Expect = 7e-10
Identities = 35/231 (15%), Positives = 79/231 (34%), Gaps = 34/231 (14%)
Query: 157 PITSSVKVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVN 216
K+ +++ +VLD S S+ + + A K + ++E+V
Sbjct: 229 GEQQKRKIVLDPSGSMNIYLVLDGSGSIGA------SDFTGAKKCLVNLIEKVASYGVKP 282
Query: 217 NVVQSGLVTFSNKIE-EFFLLEWGVSHLQRKIKYLSKF-------GVSTNSTPGLKYAYN 268
GLVT++ + + E S+ K L++ TN+ L+ Y+
Sbjct: 283 RY---GLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYS 339
Query: 269 QIFDMQGMRQHCNTEDANYKKIIVFMTDGEN----------LSTKEDQQSLYYCNEAKKR 318
+ + + +I+ MTDG + ++ ++
Sbjct: 340 MMSWPDDVP---PEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPRED 396
Query: 319 GAIVYAIGIRVIRSHEFLRACA----SPNSFYLVENPHSMYDAFSHIGKDI 365
VY G+ + + + A A + + V++ ++ D F + +
Sbjct: 397 YLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDES 447
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll
biosynthesis, photosynthesis; 7.50A {Rhodobacter
capsulatus}
Length = 189
Score = 58.2 bits (140), Expect = 3e-09
Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 27/176 (15%)
Query: 173 DMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEE 232
++ +D S S ++ ++ A ++ +L D L+TF +
Sbjct: 7 VLIFAVDASGSA------AVARLSEAKGAVELLLGRAYAARDHV-----SLITFRGTAAQ 55
Query: 233 FFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIV 292
L ++ G T G++ A + I
Sbjct: 56 VLLQPSRSLTQTKRQLQGLPGGGGTPLASGMEMAMVTAKQAR---------SRGMTPTIA 106
Query: 293 FMTDGE-NLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVI------RSHEFLRACAS 341
+TDG N++ +A K + A G+ + R + L A
Sbjct: 107 LLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIIDTAMRPNPALVDLAR 162
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A
{Homo sapiens} SCOP: c.62.1.1
Length = 198
Score = 57.5 bits (138), Expect = 4e-09
Identities = 36/207 (17%), Positives = 75/207 (36%), Gaps = 28/207 (13%)
Query: 168 TDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFS 227
+ D++ ++D S S+ S + + A++ + + Q L+ FS
Sbjct: 6 SRQEQDIVFLIDGSGSI------SSRNFATMMNFVRAVISQFQ-----RPSTQFSLMQFS 54
Query: 228 NKIEEFFLLEWGVSH--LQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDA 285
NK + F E + + + T + ++ +++F
Sbjct: 55 NKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHAS------YGARR 108
Query: 286 NYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGI----RVIRSHEFLRACAS 341
+ KI++ +TDG+ + A G I YAIG+ + S + L AS
Sbjct: 109 DAAKILIVITDGK--KEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIAS 166
Query: 342 P---NSFYLVENPHSMYDAFSHIGKDI 365
+ VE+ ++ D + + + I
Sbjct: 167 KPSQEHIFKVEDFDALKDIQNQLKEKI 193
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A
{Toxoplasma gondii}
Length = 178
Score = 55.6 bits (133), Expect = 2e-08
Identities = 31/167 (18%), Positives = 68/167 (40%), Gaps = 22/167 (13%)
Query: 165 NSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLV 224
++ +LD+ ++D S S+ I + + ++ L + + P+ N +V
Sbjct: 11 SAMGTNQLDICFLIDSSGSI------GIQNFRLVKQFLHTFLMVLPIGPEEVNN---AVV 61
Query: 225 TFSNKIEEFFLLEWGVS----HLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHC 280
T+S + + L+ + + + STN++ GLK +F +
Sbjct: 62 TYSTDVHLQWDLQSPNAVDKQLAAHAVLDMPYKKGSTNTSDGLKACKQILFTGSRPGREH 121
Query: 281 NTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGI 327
K+++ MTDGE+ D +++ E ++ G IV + +
Sbjct: 122 ------VPKLVIGMTDGES---DSDFRTVRAAKEIRELGGIVTVLAV 159
>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo
sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A
1mhp_A
Length = 213
Score = 55.2 bits (132), Expect = 2e-08
Identities = 43/216 (19%), Positives = 85/216 (39%), Gaps = 37/216 (17%)
Query: 166 SQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVT 225
S+ +LD++IVLD S S+ + D +N +L+ + + P Q G+V
Sbjct: 2 SECSTQLDIVIVLDGSNSIYPW--------DSVTAFLNDLLKRMDIGPK---QTQVGIVQ 50
Query: 226 FSNKIEEFFLL---EWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDM-QGMRQHCN 281
+ + F L L K + + G T + G A + F +G R+
Sbjct: 51 YGENVTHEFNLNKYSSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGARR--- 107
Query: 282 TEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGI---------RVIRS 332
KK++V +TDGE+ ++ + + + ++I I +
Sbjct: 108 ----GVKKVMVIVTDGES---HDNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKF 160
Query: 333 HEFLRACASPNS---FYLVENPHSMYDAFSHIGKDI 365
E +++ AS + F+ V + ++ +G+ I
Sbjct: 161 VEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERI 196
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane
protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a
1sht_X 1t6b_Y*
Length = 182
Score = 53.8 bits (128), Expect = 6e-08
Identities = 28/197 (14%), Positives = 60/197 (30%), Gaps = 23/197 (11%)
Query: 172 LDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIE 231
D+ VLD S S+ + + + + V+ ++ + FS++
Sbjct: 7 FDLYFVLDKSGSVANNWIEIYNFVQQLAERF------------VSPEMRLSFIVFSSQAT 54
Query: 232 EFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKII 291
L + + ++ L + + Q II
Sbjct: 55 IILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLA-------NEQIQKAGGLKTSSII 107
Query: 292 VFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENP 351
+ +TDG+ + ++ GA VY +G+ + R S + V+
Sbjct: 108 IALTDGKL-DGLVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVKGG 166
Query: 352 HSMYDAFSHIGKDIVTK 368
+ A I I+ +
Sbjct: 167 ---FQALKGIINSILAQ 180
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 53.4 bits (128), Expect = 8e-08
Identities = 86/500 (17%), Positives = 150/500 (30%), Gaps = 197/500 (39%)
Query: 4 LNLNIRNFFYNYKGGMTI--LTAIFLPIIFLVLGMIIEVSHIFF-----MKTVLHSMIDR 56
LNL + F Y G I L A L L E+ + K +
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 57 SLVHAA----TQIMN--EGNGNNRKKLKGGDILCRIKNTWNMSFRNELRD-----NGFVN 105
+L A Q++ G GN F ELRD + V
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDD--------Y---------FE-ELRDLYQTYHVLVG 185
Query: 106 DI--------DDIVRSTS---------LDIV-------VVPQNEGYSISA-IS------- 133
D+ +++R+T L+I+ P ++ Y +S IS
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP-DKDYLLSIPISCPLIGVI 244
Query: 134 ---RYKI--------PLKFCTFIPWYT-NSRHIVMPITSSVKVNSQTDARLDMMIVLDVS 181
Y + P + +++ T +S+ +V A + + +
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT-------------A-----VAIAET 286
Query: 182 RSMESFFDSSITKIDM-------------------AI--KSINA-------ML------- 206
S ESFF S I + +I S+ ML
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 207 EEV-KLIPDVN------------------NVVQSG----LVTFSNKIEEF----FLLEWG 239
E+V + N N+V SG L + + + L +
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 240 VSHLQRKIKYLSKF-GVSTN-STPGLKYAYNQIFDMQGMRQHCNTEDANYK----KIIVF 293
+ +RK+K+ ++F V++ + L A + I + + ++ +I V+
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLI------NKDLVKNNVSFNAKDIQIPVY 460
Query: 294 MT-DGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSH--EFLRACASPNSFYLVEN 350
T DG +L S G+I I + I ++ + L
Sbjct: 461 DTFDGSDLR----VLS----------GSISERI-VDCIIRLPVKWETTTQFKATHILDFG 505
Query: 351 PHSMYDAFSHIGKDIVTKRI 370
P S +G ++T R
Sbjct: 506 PGGA----SGLG--VLTHRN 519
Score = 33.0 bits (75), Expect = 0.12
Identities = 41/286 (14%), Positives = 81/286 (28%), Gaps = 105/286 (36%)
Query: 96 NELRDNGFVNDIDDIVRSTSLDIVVVPQNEGYSISAISRYKIPLKFCT-FIPWYTNSRHI 154
++L++ F + + + D +E + P + F+ ++
Sbjct: 31 SQLQEQ-FNKILPEPTEGFAAD------DEPTT---------PAELVGKFL------GYV 68
Query: 155 VMPITSSVKVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPD 214
S V+ + + + L F++ + I+A+ KL+ +
Sbjct: 69 S----SLVEPSKVGQFDQVLNLCLT-------EFENCY----LEGNDIHALA--AKLLQE 111
Query: 215 VNNVVQSGLVTFSNKIEEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLK---------- 264
+ LV I+ + +R S L
Sbjct: 112 N----DTTLVKTKELIKNYIT---ARIMAKRPF--------DKKSNSALFRAVGEGNAQL 156
Query: 265 YAYNQIFDMQGMRQHCNTED---------ANYK----KIIVFMTDGENLS--TKEDQQSL 309
A IF QG NT+D Y +I F E LS + +
Sbjct: 157 VA---IFGGQG-----NTDDYFEELRDLYQTYHVLVGDLIKFS--AETLSELIRTTLDAE 206
Query: 310 YYCNEAKKRGAIVYAIGIRVIRSHEFLR-ACASPNSFYLVENPHSM 354
+ G+ ++ +L +P+ YL+ P S
Sbjct: 207 KV-----------FTQGLNILE---WLENPSNTPDKDYLLSIPISC 238
Score = 32.2 bits (73), Expect = 0.21
Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 65/173 (37%)
Query: 26 FLPIIFLVLGMIIEVSHIFFMKTV-LHSMIDRSLVHAATQIMNEGNGNNRKKLKGGDILC 84
FLP+ HS L+ A+ ++N+ N DI
Sbjct: 420 FLPV------------------ASPFHS----HLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 85 RIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVVVPQN-EGYSISAISRYKIPLKFCT 143
+ +T++ S +LR + + IV I+ +P E
Sbjct: 458 PVYDTFDGS---DLRVLS-GSISERIVDC----IIRLPVKWE--------------TTTQ 495
Query: 144 FIPWYTNSRHIVM--PITSS---VKVNSQTD---ARLDMMIV---LDVSRSME 185
F + HI+ P +S V + D R+ IV LD++ +
Sbjct: 496 F-----KATHILDFGPGGASGLGVLTHRNKDGTGVRV---IVAGTLDINPDDD 540
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP:
c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1
1bho_1 1idn_1
Length = 194
Score = 53.4 bits (127), Expect = 8e-08
Identities = 38/206 (18%), Positives = 81/206 (39%), Gaps = 28/206 (13%)
Query: 170 ARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNK 229
D+ ++D S S+ + ++ ++E++K + +++Q + +
Sbjct: 4 EDSDIAFLIDGSGSI------IPHDFRRMKEFVSTVMEQLKKSKTLFSLMQ---YSEEFR 54
Query: 230 IEEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKK 289
I F + + +K +++ T++ G++ ++F++ + N K
Sbjct: 55 IHFTFKEFQNNPNPRSLVKPITQLLGRTHTATGIRKVVRELFNITNGARK------NAFK 108
Query: 290 IIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGI----RVIRSHEFLRACASPNS- 344
I+V +TDGE + EA + G I Y IG+ R +S + L AS
Sbjct: 109 ILVVITDGE--KFGDPLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPR 166
Query: 345 --FYLVENPHSMYDAFSHIGKDIVTK 368
+ V N ++A I + K
Sbjct: 167 DHVFQVNN----FEALKTIQNQLREK 188
>3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell
adhesion, cleavage on PAIR of basic residues, disease
mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens}
Length = 184
Score = 47.5 bits (112), Expect = 4e-06
Identities = 25/197 (12%), Positives = 62/197 (31%), Gaps = 26/197 (13%)
Query: 172 LDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIE 231
LD+ VL+ S + ++ + ++ + ++ V V+Q +
Sbjct: 3 LDVAFVLEGSDKIG---EADFNRSKEFMEEVIQRMD-VGQDSIHVTVLQYSYMVTVEYPF 58
Query: 232 EFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKII 291
+ + R+I+Y +T L+Y + F + + ++
Sbjct: 59 SEAQSKGDILQRVREIRYQGGNRTNTG--LALRYLSDHSFLVSQGDRE------QAPNLV 110
Query: 292 VFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENP 351
+T + V IG+ + + L PN+ L+++
Sbjct: 111 YMVTGNPA------SDEIK----RLPGDIQVVPIGVGPNANVQELERIGWPNAPILIQD- 159
Query: 352 HSMYDAFSHIGKDIVTK 368
++ D+V +
Sbjct: 160 ---FETLPREAPDLVLQ 173
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell
adhesion, glycoprotein, toxin/cell adhesion complex;
HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB:
1aox_A 1dzi_A
Length = 200
Score = 45.6 bits (107), Expect = 2e-05
Identities = 29/209 (13%), Positives = 70/209 (33%), Gaps = 31/209 (14%)
Query: 170 ARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNK 229
+ +D+++V D S S+ + D + ++ + + P V
Sbjct: 5 SLIDVVVVCDESNSIYPW--------DAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRV 56
Query: 230 IEEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFD-MQGMRQHCNTEDANYK 288
+ + + + G TN+ ++YA + G R+
Sbjct: 57 VFNLNTYKTKEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYSAASGGRRSAT------- 109
Query: 289 KIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGI---------RVIRSHEFLRAC 339
K++V +TDGE+ + ++ + + I + + ++A
Sbjct: 110 KVMVVVTDGES---HDGSMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAI 166
Query: 340 ASP---NSFYLVENPHSMYDAFSHIGKDI 365
AS F+ V + ++ + +G+ I
Sbjct: 167 ASIPTERYFFNVSDEAALLEKAGTLGEQI 195
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein,
nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Length = 192
Score = 43.9 bits (102), Expect = 5e-05
Identities = 24/192 (12%), Positives = 62/192 (32%), Gaps = 22/192 (11%)
Query: 175 MIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFF 234
MI++D S M + D T+ + +++ + + + N GL+T + +
Sbjct: 6 MILIDNSEWMIN-GDYIPTRFEAQKDTVHMIFNQ---KINDNPENMCGLMTIGDNSPQVL 61
Query: 235 LLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFM 294
+ + G++ A + +H + + +
Sbjct: 62 STLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLAL-------KHRENKIQRQRIVAFVG 114
Query: 295 TDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASP----NSFYLV-- 348
+ +++ + KK + I I +++ L+ +S +LV
Sbjct: 115 SPIVE----DEKNLIRLAKRMKKNNVAIDIIHIGELQNESALQHFIDAANSSDSCHLVSI 170
Query: 349 -ENPHSMYDAFS 359
+P + D +
Sbjct: 171 PPSPQLLSDLVN 182
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide
binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB:
2adf_A 1fe8_A 1ao3_A
Length = 189
Score = 43.0 bits (100), Expect = 1e-04
Identities = 29/203 (14%), Positives = 63/203 (31%), Gaps = 22/203 (10%)
Query: 169 DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSN 228
LD++++LD S S + D A + + + P V
Sbjct: 3 SQPLDVILLLDGSSSF------PASYFDEMKSFAKAFISKANIGPR-LTQVSVLQYGSIT 55
Query: 229 KIEEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYK 288
I+ + + +HL + + + G + L +A + +
Sbjct: 56 TIDVPWNVVPEKAHLLSLVDVMQREGGPSQIGDALGFAVRYLTSEMHGARP------GAS 109
Query: 289 KIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASP---NSF 345
K +V + ++ + + + A+ V+ IGI LR A P ++
Sbjct: 110 KAVVILVTDVSVDSVDA-----AADAARSNRVTVFPIGIGDRYDAAQLRILAGPAGDSNV 164
Query: 346 YLVENPHSMYDAFSHIGKDIVTK 368
++ +G + K
Sbjct: 165 VKLQRIED-LPTMVTLGNSFLHK 186
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Escherichia
coli} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I
1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A*
1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A*
2o7n_A* 3f78_A* ...
Length = 179
Score = 42.6 bits (99), Expect = 1e-04
Identities = 32/198 (16%), Positives = 69/198 (34%), Gaps = 25/198 (12%)
Query: 172 LDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIE 231
+D++ + D S S+ + + + ++++ VQ + S K E
Sbjct: 3 VDLVFLFDGSMSL------QPDEFQKILDFMKDVMKKCSNTSYQFAAVQ---FSTSYKTE 53
Query: 232 EFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFD-MQGMRQHCNTEDANYKKI 290
F +K++ + TN+ + Y ++F G R + K+
Sbjct: 54 FDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARP-------DATKV 106
Query: 291 IVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNS---FYL 347
++ +TDGE + + + R I + S E L AS + +
Sbjct: 107 LIIITDGEATDSGNIDAA-----KDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKI 161
Query: 348 VENPHSMYDAFSHIGKDI 365
++ + D + + K I
Sbjct: 162 LDTFEKLKDLCTELQKKI 179
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 42.0 bits (98), Expect = 2e-04
Identities = 21/173 (12%), Positives = 49/173 (28%), Gaps = 21/173 (12%)
Query: 175 MIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTF-----SNK 229
++ +DV +M + + + A K I ++ ++ + + + LV F N
Sbjct: 11 VLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQR-QVFAENKDEI--ALVLFGTDGTDNP 67
Query: 230 IEE-------FFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNT 282
+ + SK + + + + QH
Sbjct: 68 LSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQAD----FLDALIVSMDVIQHETI 123
Query: 283 EDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEF 335
K+ I TD + +K + + KK + + +
Sbjct: 124 GKKFEKRHIEIFTDLSSRFSKSQLDII--IHSLKKCDISLQFFLPFSLGKEDG 174
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex,
immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Length = 223
Score = 41.5 bits (96), Expect = 3e-04
Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 31/222 (13%)
Query: 157 PITSSVKVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVN 216
+ +S + +LD++IVLD S S+ + + I +N +L+ + + P
Sbjct: 8 QVVNSFAPVQECSTQLDIVIVLDGSNSIYPW--------ESVIAFLNDLLKRMDIGPKQT 59
Query: 217 NVVQSGLVTFSNKIEEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFD-MQG 275
V L K + + G T + G+ A + F +G
Sbjct: 60 QVGIVQYGENVTHEFNLNKYSSTEEVLVAANKIVQRGGRQTMTALGIDTARKEAFTEARG 119
Query: 276 MRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGI-------- 327
R+ KK++V +TDGE+ +Q + + + ++I I
Sbjct: 120 ARR-------GVKKVMVIVTDGESHDNYRLKQVI---QDCEDENIQRFSIAILGHYNRGN 169
Query: 328 -RVIRSHEFLRACASPNS---FYLVENPHSMYDAFSHIGKDI 365
+ E +++ AS + F+ V + ++ +G+ I
Sbjct: 170 LSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERI 211
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON
willebrand factor A domain, beta- sheet, RNA binding
protein; 1.89A {Deinococcus radiodurans}
Length = 535
Score = 39.5 bits (92), Expect = 0.001
Identities = 21/160 (13%), Positives = 47/160 (29%), Gaps = 23/160 (14%)
Query: 171 RLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKI 230
++ LDVS SM + + + + + L ++ PD + F+ +
Sbjct: 362 NTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDA------LTMGFAEQF 415
Query: 231 EEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKI 290
+ + K S T+ + +A + +
Sbjct: 416 RPLGITP-RDTLESAMQKAQSVSFGGTDCAQPILWAAQE--------------RLDVDTF 460
Query: 291 IVFMTDGE-NLSTKEDQQSLYYCNEAKKRGAIVYAIGIRV 329
+V+ TD E +L + R + +G+
Sbjct: 461 VVY-TDNETWAGQVHPTVALDQYAQKMGRAPKLIVVGLTA 499
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein
structure, midwest center for structural genomics, MCSG,
PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Length = 218
Score = 33.9 bits (76), Expect = 0.062
Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 16/127 (12%)
Query: 173 DMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEE 232
+++I LD+S SM + D ++++ A + I+ +++E + + G++ F+
Sbjct: 13 EVIIALDISNSMLA-QDVQPSRLEKAKRLISRLVDE-------LDNDKVGMIVFAGDAFT 64
Query: 233 FFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIV 292
+ + ++ +S +S T I + + T + I+
Sbjct: 65 QLPITSDYISAKMFLESISPSLISKQGT--------AIGEAINLATRSFTPQEGVGRAII 116
Query: 293 FMTDGEN 299
+TDGEN
Sbjct: 117 VITDGEN 123
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas,
admidas, membrane, integrin, titration, rossman fold,
cell adhesion, transmembrane; NMR {Mus musculus}
Length = 212
Score = 32.4 bits (73), Expect = 0.18
Identities = 16/134 (11%), Positives = 44/134 (32%), Gaps = 23/134 (17%)
Query: 169 DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSN 228
D +D+ ++ +S S + + + +L+ + +++ + G + N
Sbjct: 1 DNSVDLYFLMGLSGSAQGH-------LSNVQTLGSDLLKALN---EISRSGRIGFGSIVN 50
Query: 229 K-IEEFFLLEWGVSHLQRKIKYLSKFGVS---TNSTPGLKYAYNQIFDMQGMRQHCNTED 284
+ L S QR+++ G + + ++
Sbjct: 51 MTFQHILKLTADSSQFQRELRKQLVSGKLATPKGQLDAVVQVAICLGEIG---------W 101
Query: 285 ANYKKIIVFMTDGE 298
N + +V +TD +
Sbjct: 102 RNGTRFLVLVTDND 115
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat
repeat, VON willebrand factor A, rossmann fold, midas
motif', RNA binding protein; 1.95A {Xenopus laevis}
SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Length = 538
Score = 30.3 bits (68), Expect = 0.71
Identities = 27/141 (19%), Positives = 45/141 (31%), Gaps = 30/141 (21%)
Query: 161 SVKVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQ 220
S K+ T R ++ +DVS SM SI + ++ ++ +
Sbjct: 360 SFKLVEPTGKRF--LLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTE--------KD 409
Query: 221 SGLVTFSNKIEEFFLLEWGVSH--LQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQ 278
S +V FS+ E V+ + K ST+ + +A
Sbjct: 410 SHMVAFSD---EMLPCPITVNMLLHEVVEKMSDITMGSTDCALPMLWAQKT--------- 457
Query: 279 HCNTEDANYKKIIVFMTDGEN 299
+ IVF TD E
Sbjct: 458 -----NTAADIFIVF-TDCET 472
>2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing,
platelet integrin ALPHAIIBBETA3, polymorphism,
glycoprotein, cell adhesion, calcium; HET: NAG MAN;
2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B*
2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B*
1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Length = 461
Score = 30.3 bits (68), Expect = 0.72
Identities = 9/55 (16%), Positives = 22/55 (40%)
Query: 157 PITSSVKVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKL 211
S++V D +D+ ++D+S SM+ S + + +++
Sbjct: 97 SKNFSIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRI 151
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain,
alternative splicing, cell adhesion, disease mutation,
glycoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB:
3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 30.1 bits (67), Expect = 0.86
Identities = 11/73 (15%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 157 PITSSVKVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVN 216
S++V D +D+ ++D+S SM+ + + +++ +
Sbjct: 97 SKNFSIQVRQVEDYPVDIYYLMDLSYSMKDD-------LWSIQNLGTKLATQMR---KLT 146
Query: 217 NVVQSGLVTFSNK 229
+ ++ G F +K
Sbjct: 147 SNLRIGFGAFVDK 159
>3k6s_B Integrin beta-2; hetero dimer, cell receptor, adhesion molecule,
calcium, cell adhesion, disulfide bond, glycoprotein,
magnesium, membrane; HET: NAG MAN; 3.50A {Homo sapiens}
PDB: 3k71_B* 3k72_B*
Length = 687
Score = 30.1 bits (67), Expect = 0.94
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 157 PITSSVKVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVN 216
+V +D+ ++D+S SM + K +L + ++
Sbjct: 90 AAAFNVTFRRAKGYPIDLYYLMDLSYSMLDD-------LRNVKKLGGDLLRALN---EIT 139
Query: 217 NVVQSGLVTFSNK 229
+ G +F +K
Sbjct: 140 ESGRIGFGSFVDK 152
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1
Length = 192
Score = 28.2 bits (63), Expect = 2.7
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 284 DANYKKIIVFMTDGENLSTKEDQQSLYYC--NEAKKRGAIVYAIG 326
D + + + +M +G+ L D+ +Y+C K V + G
Sbjct: 48 DEAHARALEWMEEGKELPFSFDKGVVYHCGPLVKKNDEWRVVSAG 92
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase;
2.70A {Homo sapiens}
Length = 365
Score = 28.1 bits (62), Expect = 3.4
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 126 GYSISAISRYKIP---LKFCTFI-PWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLD 179
Y+ +A + P T I P + R IV+P +K+ +AR + D
Sbjct: 260 AYAAAAGASMIHPNVPAIMITPICPHSLSFRPIVVPAGVELKIMLSPEARNTAWVSFD 317
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase;
2.10A {Streptococcus mutans}
Length = 213
Score = 27.8 bits (61), Expect = 4.0
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 6/80 (7%)
Query: 45 FMKTVLHSMIDRSLVHAATQIMNEGNGN-----NRKKLKGGDILCRIKNTWNMSFRNELR 99
F+K + + L++ + N N N+ + + IL N S R
Sbjct: 46 FLKLIDKKGFGKYLMYEWRYLDNNYTENPDFIFNQPEYREASILITGDNFGAGSSREHAA 105
Query: 100 DNGFVNDIDDIVRSTSLDIV 119
+ + S +
Sbjct: 106 WALADYGFKV-IVAGSFGDI 124
>1t6l_A DNA polymerase processivity factor; processivity fold, replication;
HET: DNA; 1.85A {Human herpesvirus 5} SCOP: d.131.1.2
d.131.1.2 PDB: 1yyp_A*
Length = 290
Score = 27.2 bits (60), Expect = 6.1
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 299 NLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVEN 350
N+ K Q+L C K +R++ H+ L AS N + VEN
Sbjct: 220 NVQLKNFYQTLLNCAVTK------LPCTLRIVTEHDTLLYVASRNGLFAVEN 265
>1j36_A ANCE, angiotensin converting enzyme; hydrolase; HET: LPR; 2.40A
{Drosophila melanogaster} SCOP: d.92.1.5 PDB: 1j37_A*
1j38_A
Length = 607
Score = 27.0 bits (59), Expect = 6.7
Identities = 17/120 (14%), Positives = 41/120 (34%), Gaps = 3/120 (2%)
Query: 199 IKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQRKIKYLSKFGVSTN 258
E K +++ + + ++ +F + L+R+ K L+K G +
Sbjct: 36 AYRSAITDENEKKKNEISAELAKFMKEVASDTTKFQWRSYQSEDLKRQFKALTKLGYAAL 95
Query: 259 STPGLKYAYNQIFDMQGMR---QHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEA 315
+ + M+ + C+ +D+ + + E +S D + L Y
Sbjct: 96 PEDDYAELLDTLSAMESNFAKVKVCDYKDSTKCDLALDPEIEEVISKSRDHEELAYYWRE 155
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 26.6 bits (58), Expect = 8.4
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 40 VSHIFFMKTVLHSMIDRSLVHAATQIMNEGNGNNRKKLKGGDILCRIKNTWNMSFRNELR 99
V HI F+ + +++ + ++ N + D R+ WN+ +
Sbjct: 92 VFHIGFLSKIK-KILECVCWNCGKLKIDSSNPKFNDTQRYRDPKNRLNAVWNVCKTKMVC 150
Query: 100 DNGFVNDIDDI 110
D G D+
Sbjct: 151 DTGLSAGSDNF 161
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.137 0.403
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,218,582
Number of extensions: 146786
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 45
Length of query: 374
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 280
Effective length of database: 3,414,294
Effective search space: 956002320
Effective search space used: 956002320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.1 bits)