BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter asiaticus str. psy62] (374 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter asiaticus str. psy62] Length = 374 Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/374 (100%), Positives = 374/374 (100%) Query: 1 MFSLNLNIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVH 60 MFSLNLNIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVH Sbjct: 1 MFSLNLNIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVH 60 Query: 61 AATQIMNEGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVV 120 AATQIMNEGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVV Sbjct: 61 AATQIMNEGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVV 120 Query: 121 VPQNEGYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDV 180 VPQNEGYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDV Sbjct: 121 VPQNEGYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDV 180 Query: 181 SRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGV 240 SRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGV Sbjct: 181 SRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGV 240 Query: 241 SHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENL 300 SHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENL Sbjct: 241 SHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENL 300 Query: 301 STKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSH 360 STKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSH Sbjct: 301 STKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSH 360 Query: 361 IGKDIVTKRIWYDK 374 IGKDIVTKRIWYDK Sbjct: 361 IGKDIVTKRIWYDK 374 >gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter asiaticus str. psy62] Length = 371 Score = 408 bits (1048), Expect = e-116, Method: Compositional matrix adjust. Identities = 203/370 (54%), Positives = 273/370 (73%), Gaps = 3/370 (0%) Query: 6 LNIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQI 65 LNIRNFFYN KG ++ILTAI LP+IF+V+G++IE SH FF+K LH ++D SL++ AT+I Sbjct: 4 LNIRNFFYNCKGSISILTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSLLYTATKI 63 Query: 66 MNEGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVVVPQNE 125 +N+ NGNN KK K IKN W FRNELR+NGF DI++I RSTSL I++ Q++ Sbjct: 64 LNQENGNNGKKQKNDFSYRIIKNIWQTDFRNELRENGFAQDINNIERSTSLSIIIDDQHK 123 Query: 126 GYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDVSRSME 185 Y++SA+SRY++P FCTF PW NS H + ITSSVK++S++D LDMM+VLDVS SM Sbjct: 124 DYNLSAVSRYEMPFIFCTF-PWCANSSHAPLLITSSVKISSKSDIGLDMMMVLDVSLSMN 182 Query: 186 SFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQR 245 F + K+ +A +SI ML+ +K IPDVNNVV+SGLVTFS+KI + F L WGV H+Q Sbjct: 183 DHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQE 242 Query: 246 KIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTK-E 304 KI L FG +T STPGL+YAYN+IFD + +H +YKK I+F+TDGEN S + Sbjct: 243 KINRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID 301 Query: 305 DQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSHIGKD 364 +++SL+YCNEAK+RGAIVYAIG++ + +FL+ CASP+ FY V+N ++DAF IGK+ Sbjct: 302 NKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCASPDRFYSVQNSRKLHDAFLRIGKE 361 Query: 365 IVTKRIWYDK 374 +V +RI Y+K Sbjct: 362 MVKQRILYNK 371 >gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter asiaticus str. psy62] Length = 458 Score = 81.3 bits (199), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 21/210 (10%) Query: 178 LDVSRSMESFFDSS-----ITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEE 232 LD S S E F DSS I K + ++ +++ +K I +VN+ V+ G F++++ Sbjct: 249 LDPSLSEEHFVDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVIS 308 Query: 233 FFLLEWGVSHLQRKIKYLSKFGVSTNS------TPGLKYAYNQIFDMQGMRQHCNTEDAN 286 WGV L R I + F + N ++ AY+ I H + Sbjct: 309 DPSFSWGVHKLIRTI--VKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLE 366 Query: 287 YKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHE-----FLRACAS 341 KK IV +TDGEN T+++++ + CN+AK +G + I V ++ + FL CAS Sbjct: 367 AKKYIVLLTDGEN--TQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS 424 Query: 342 PNSFYLVENPHSMYDAF-SHIGKDIVTKRI 370 PNSF+ + H + F IG +I + I Sbjct: 425 PNSFFEANSTHELNKIFRDRIGNEIFERVI 454 Score = 38.1 bits (87), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 23/130 (17%) Query: 17 GGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMNEGNGNNRKK 76 G I+TA+ +P++ V GM+++V + + L +++ A+ ++ Sbjct: 20 GHFFIITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTAIITASVPLIQSLE------ 73 Query: 77 LKGGDILCRIKNTWNM-----------SFRNELRDNGFVNDIDDIVRSTSLDIVVVPQNE 125 ++ R KN++ +F N L+ N ++ DIVR T++++ P+ Sbjct: 74 ----EVSSRAKNSFTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAVEM--NPRKS 127 Query: 126 GYSISAISRY 135 Y + SRY Sbjct: 128 AYQVVLSSRY 137 >gi|254781110|ref|YP_003065523.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62] Length = 420 Score = 62.4 bits (150), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 86/400 (21%), Positives = 169/400 (42%), Gaps = 51/400 (12%) Query: 16 KGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMN-------- 67 K +I+ A+ + L++G +I V + K + S + +++ A+++++ Sbjct: 19 KANFSIIFALSVMSFLLLIGFLIYVLDWHYKKNSMESANNAAILAGASKMVSNLSRLGDR 78 Query: 68 -EGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVN-DIDDIVRSTSLDIVVVPQNE 125 E N+ K+ D IKN S F N +I +IV S+ + + + N Sbjct: 79 FESISNHAKRALIDDAKRFIKNHIKESLSG--YSAVFYNTEIQNIVNSSRISMTHMANNR 136 Query: 126 --------GYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIV 177 Y++ ++ Y L+F + ++ IV I + +++ + +V Sbjct: 137 LDSSNNTIFYNMDVMTSYDYRLQFIEHLLNQRYNQKIVSFIPALLRIEMGERPIFLIELV 196 Query: 178 LDVSRSMESFF--------------DSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGL 223 +D+S SM D TK+ ++ L+ + L+ V V GL Sbjct: 197 VDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGL 256 Query: 224 VTFSNKIEEFFLLEWGVSHLQRKIKYLSKFGVS-----TNSTPGLKYAYN-------QIF 271 + ++ ++E+ WG ++ +Y+++ S T+STP +K AY + F Sbjct: 257 IGYTTRVEKNIEPSWGTEKVR---QYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSF 313 Query: 272 DMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRV-I 330 RQ ++K I+F+TDGEN + K + ++ C++AK+ + I I Sbjct: 314 FTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASP 373 Query: 331 RSHEFLRAC-ASPNSFYLVENPHSMYDAFSHIGKDIVTKR 369 L+ C +SP Y V N S+ F +I + +V ++ Sbjct: 374 NGQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQLMVHRK 413 >gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62] Length = 398 Score = 61.2 bits (147), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 79/402 (19%), Positives = 171/402 (42%), Gaps = 63/402 (15%) Query: 22 LTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMNEGNGNNRKKLKGGD 81 +TAI + + FL + I+++HI +++ + S +D +++ I+++ + K Sbjct: 1 MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKD-- 58 Query: 82 ILCRIKNTWNMSFRNELRDNGFVND-IDDIVRSTSLDIVVVPQNE-GYSISAISRYKIPL 139 + + + L+ ++ + DI + ++I N Y + ++Y+IP Sbjct: 59 ---QTSTIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKNNPLQYIAESKAQYEIPT 115 Query: 140 K---FCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDVSRSME----------- 185 + IP ++ + T ++ +S+ A + + +VLDVSRSME Sbjct: 116 ENLFLKGLIPSALT--NLSLRSTGIIERSSENLA-ISICMVLDVSRSMEDLYLQKHNDNN 172 Query: 186 ---------------SFFDSSITK-------------IDMAIKSINAMLEEV-KLIPDVN 216 SF+ + TK ID+ I+S ++ + K I + Sbjct: 173 NMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKK 232 Query: 217 NV-VQSGLVTFSNKI--EEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDM 273 N+ V+ G + ++ I + L ++ ++ ++ L+ + +TN+ P + +AY ++++ Sbjct: 233 NLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYE-NTNTYPAMHHAYRELYN- 290 Query: 274 QGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQ---QSLYYCNEAKKRGAIVYAIGIRV- 329 + H KK ++F+TDGEN Q +L C + G +Y++ + Sbjct: 291 EKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP 350 Query: 330 IRSHEFLRACA-SPNSFYLVENPHSMYDAFSHIGKDIVTKRI 370 + LR C S F+ V + + ++F I I + + Sbjct: 351 PEGQDLLRKCTDSSGQFFAVNDSRELLESFDKITDKIQEQSV 392 >gi|254780742|ref|YP_003065155.1| hypothetical protein CLIBASIA_03145 [Candidatus Liberibacter asiaticus str. psy62] Length = 419 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Query: 119 VVVPQNEGYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVL 178 + N Y +AI ++ PLK C PWY N ++ + + + A D +V Sbjct: 100 ACIDSNVAYIDTAI--HESPLKICESPPWYNNYEWSLLDECRTKSITAILGAGFDPGVVN 157 Query: 179 DVSR-SMESFF 188 +R + + +F Sbjct: 158 AFARLAQDEYF 168 >gi|254780409|ref|YP_003064822.1| ribose-phosphate pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62] Length = 310 Score = 25.4 bits (54), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 12/94 (12%) Query: 140 KFCTFIPWYTNSRH-----IVMPITSSVKVNSQTDARLDMMIVLDV-SRSMESFFD---- 189 + IP++ R PI++ + N T A D +I+LD+ + ++ FFD Sbjct: 81 RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTD 140 Query: 190 --SSITKIDMAIKSINAMLEEVKLIPDVNNVVQS 221 ++ ++ IK N + + + PDV VV++ Sbjct: 141 NLYALPILERDIKERNDISNLMVVSPDVGGVVRA 174 >gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str. psy62] Length = 329 Score = 24.6 bits (52), Expect = 2.7, Method: Compositional matrix adjust. Identities = 11/33 (33%), Positives = 18/33 (54%) Query: 5 NLNIRNFFYNYKGGMTILTAIFLPIIFLVLGMI 37 L F Y + ++ + +PIIFL+LG+I Sbjct: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133 >gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 228 Score = 23.9 bits (50), Expect = 5.3, Method: Compositional matrix adjust. Identities = 10/24 (41%), Positives = 15/24 (62%) Query: 203 NAMLEEVKLIPDVNNVVQSGLVTF 226 N+M E VK+I D ++Q G+ F Sbjct: 140 NSMFEFVKVIRDSGGIIQDGIGLF 163 >gi|254780982|ref|YP_003065395.1| putative homoserine/homoserine lactoneefflux protein [Candidatus Liberibacter asiaticus str. psy62] Length = 202 Score = 23.1 bits (48), Expect = 7.7, Method: Compositional matrix adjust. Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Query: 141 FCTFIPWYTNSRHIVMP---ITSSVKVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDM 197 F +P Y N H ++P I S V+ DA + M L S+ F S KI Sbjct: 128 FMAMVPAYLNMNHYILPQSLILSLTMVS--VDAMVLMTFSLICSKLRTLFSSSKFVKIQN 185 Query: 198 AIKSINAMLEEVKLIPD 214 + ++ +L ++++ + Sbjct: 186 RVSAVVFLLLALRIVAN 202 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.137 0.403 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 241,625 Number of Sequences: 1233 Number of extensions: 10114 Number of successful extensions: 45 Number of sequences better than 100.0: 13 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 15 length of query: 374 length of database: 328,796 effective HSP length: 75 effective length of query: 299 effective length of database: 236,321 effective search space: 70659979 effective search space used: 70659979 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 39 (19.6 bits)