BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780934|ref|YP_003065347.1| hypothetical protein
CLIBASIA_04165 [Candidatus Liberibacter asiaticus str. psy62]
(374 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 374
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/374 (100%), Positives = 374/374 (100%)
Query: 1 MFSLNLNIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVH 60
MFSLNLNIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVH
Sbjct: 1 MFSLNLNIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVH 60
Query: 61 AATQIMNEGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVV 120
AATQIMNEGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVV
Sbjct: 61 AATQIMNEGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVV 120
Query: 121 VPQNEGYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDV 180
VPQNEGYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDV
Sbjct: 121 VPQNEGYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDV 180
Query: 181 SRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGV 240
SRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGV
Sbjct: 181 SRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGV 240
Query: 241 SHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENL 300
SHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENL
Sbjct: 241 SHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENL 300
Query: 301 STKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSH 360
STKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSH
Sbjct: 301 STKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSH 360
Query: 361 IGKDIVTKRIWYDK 374
IGKDIVTKRIWYDK
Sbjct: 361 IGKDIVTKRIWYDK 374
>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 371
Score = 408 bits (1048), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/370 (54%), Positives = 273/370 (73%), Gaps = 3/370 (0%)
Query: 6 LNIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQI 65
LNIRNFFYN KG ++ILTAI LP+IF+V+G++IE SH FF+K LH ++D SL++ AT+I
Sbjct: 4 LNIRNFFYNCKGSISILTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSLLYTATKI 63
Query: 66 MNEGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVVVPQNE 125
+N+ NGNN KK K IKN W FRNELR+NGF DI++I RSTSL I++ Q++
Sbjct: 64 LNQENGNNGKKQKNDFSYRIIKNIWQTDFRNELRENGFAQDINNIERSTSLSIIIDDQHK 123
Query: 126 GYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDVSRSME 185
Y++SA+SRY++P FCTF PW NS H + ITSSVK++S++D LDMM+VLDVS SM
Sbjct: 124 DYNLSAVSRYEMPFIFCTF-PWCANSSHAPLLITSSVKISSKSDIGLDMMMVLDVSLSMN 182
Query: 186 SFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQR 245
F + K+ +A +SI ML+ +K IPDVNNVV+SGLVTFS+KI + F L WGV H+Q
Sbjct: 183 DHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQE 242
Query: 246 KIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTK-E 304
KI L FG +T STPGL+YAYN+IFD + +H +YKK I+F+TDGEN S +
Sbjct: 243 KINRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID 301
Query: 305 DQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSHIGKD 364
+++SL+YCNEAK+RGAIVYAIG++ + +FL+ CASP+ FY V+N ++DAF IGK+
Sbjct: 302 NKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCASPDRFYSVQNSRKLHDAFLRIGKE 361
Query: 365 IVTKRIWYDK 374
+V +RI Y+K
Sbjct: 362 MVKQRILYNK 371
>gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 458
Score = 81.3 bits (199), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 21/210 (10%)
Query: 178 LDVSRSMESFFDSS-----ITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEE 232
LD S S E F DSS I K + ++ +++ +K I +VN+ V+ G F++++
Sbjct: 249 LDPSLSEEHFVDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVIS 308
Query: 233 FFLLEWGVSHLQRKIKYLSKFGVSTNS------TPGLKYAYNQIFDMQGMRQHCNTEDAN 286
WGV L R I + F + N ++ AY+ I H +
Sbjct: 309 DPSFSWGVHKLIRTI--VKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLE 366
Query: 287 YKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHE-----FLRACAS 341
KK IV +TDGEN T+++++ + CN+AK +G + I V ++ + FL CAS
Sbjct: 367 AKKYIVLLTDGEN--TQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS 424
Query: 342 PNSFYLVENPHSMYDAF-SHIGKDIVTKRI 370
PNSF+ + H + F IG +I + I
Sbjct: 425 PNSFFEANSTHELNKIFRDRIGNEIFERVI 454
Score = 38.1 bits (87), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 23/130 (17%)
Query: 17 GGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMNEGNGNNRKK 76
G I+TA+ +P++ V GM+++V + + L +++ A+ ++
Sbjct: 20 GHFFIITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTAIITASVPLIQSLE------ 73
Query: 77 LKGGDILCRIKNTWNM-----------SFRNELRDNGFVNDIDDIVRSTSLDIVVVPQNE 125
++ R KN++ +F N L+ N ++ DIVR T++++ P+
Sbjct: 74 ----EVSSRAKNSFTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAVEM--NPRKS 127
Query: 126 GYSISAISRY 135
Y + SRY
Sbjct: 128 AYQVVLSSRY 137
>gi|254781110|ref|YP_003065523.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 420
Score = 62.4 bits (150), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 169/400 (42%), Gaps = 51/400 (12%)
Query: 16 KGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMN-------- 67
K +I+ A+ + L++G +I V + K + S + +++ A+++++
Sbjct: 19 KANFSIIFALSVMSFLLLIGFLIYVLDWHYKKNSMESANNAAILAGASKMVSNLSRLGDR 78
Query: 68 -EGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVN-DIDDIVRSTSLDIVVVPQNE 125
E N+ K+ D IKN S F N +I +IV S+ + + + N
Sbjct: 79 FESISNHAKRALIDDAKRFIKNHIKESLSG--YSAVFYNTEIQNIVNSSRISMTHMANNR 136
Query: 126 --------GYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIV 177
Y++ ++ Y L+F + ++ IV I + +++ + +V
Sbjct: 137 LDSSNNTIFYNMDVMTSYDYRLQFIEHLLNQRYNQKIVSFIPALLRIEMGERPIFLIELV 196
Query: 178 LDVSRSMESFF--------------DSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGL 223
+D+S SM D TK+ ++ L+ + L+ V V GL
Sbjct: 197 VDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGL 256
Query: 224 VTFSNKIEEFFLLEWGVSHLQRKIKYLSKFGVS-----TNSTPGLKYAYN-------QIF 271
+ ++ ++E+ WG ++ +Y+++ S T+STP +K AY + F
Sbjct: 257 IGYTTRVEKNIEPSWGTEKVR---QYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSF 313
Query: 272 DMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRV-I 330
RQ ++K I+F+TDGEN + K + ++ C++AK+ + I I
Sbjct: 314 FTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASP 373
Query: 331 RSHEFLRAC-ASPNSFYLVENPHSMYDAFSHIGKDIVTKR 369
L+ C +SP Y V N S+ F +I + +V ++
Sbjct: 374 NGQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQLMVHRK 413
>gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 398
Score = 61.2 bits (147), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/402 (19%), Positives = 171/402 (42%), Gaps = 63/402 (15%)
Query: 22 LTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMNEGNGNNRKKLKGGD 81
+TAI + + FL + I+++HI +++ + S +D +++ I+++ + K
Sbjct: 1 MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKD-- 58
Query: 82 ILCRIKNTWNMSFRNELRDNGFVND-IDDIVRSTSLDIVVVPQNE-GYSISAISRYKIPL 139
+ + + L+ ++ + DI + ++I N Y + ++Y+IP
Sbjct: 59 ---QTSTIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKNNPLQYIAESKAQYEIPT 115
Query: 140 K---FCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDVSRSME----------- 185
+ IP ++ + T ++ +S+ A + + +VLDVSRSME
Sbjct: 116 ENLFLKGLIPSALT--NLSLRSTGIIERSSENLA-ISICMVLDVSRSMEDLYLQKHNDNN 172
Query: 186 ---------------SFFDSSITK-------------IDMAIKSINAMLEEV-KLIPDVN 216
SF+ + TK ID+ I+S ++ + K I +
Sbjct: 173 NMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKK 232
Query: 217 NV-VQSGLVTFSNKI--EEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDM 273
N+ V+ G + ++ I + L ++ ++ ++ L+ + +TN+ P + +AY ++++
Sbjct: 233 NLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYE-NTNTYPAMHHAYRELYN- 290
Query: 274 QGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQ---QSLYYCNEAKKRGAIVYAIGIRV- 329
+ H KK ++F+TDGEN Q +L C + G +Y++ +
Sbjct: 291 EKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP 350
Query: 330 IRSHEFLRACA-SPNSFYLVENPHSMYDAFSHIGKDIVTKRI 370
+ LR C S F+ V + + ++F I I + +
Sbjct: 351 PEGQDLLRKCTDSSGQFFAVNDSRELLESFDKITDKIQEQSV 392
>gi|254780742|ref|YP_003065155.1| hypothetical protein CLIBASIA_03145 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 419
Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 119 VVVPQNEGYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVL 178
+ N Y +AI ++ PLK C PWY N ++ + + + A D +V
Sbjct: 100 ACIDSNVAYIDTAI--HESPLKICESPPWYNNYEWSLLDECRTKSITAILGAGFDPGVVN 157
Query: 179 DVSR-SMESFF 188
+R + + +F
Sbjct: 158 AFARLAQDEYF 168
>gi|254780409|ref|YP_003064822.1| ribose-phosphate pyrophosphokinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 310
Score = 25.4 bits (54), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 140 KFCTFIPWYTNSRH-----IVMPITSSVKVNSQTDARLDMMIVLDV-SRSMESFFD---- 189
+ IP++ R PI++ + N T A D +I+LD+ + ++ FFD
Sbjct: 81 RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTD 140
Query: 190 --SSITKIDMAIKSINAMLEEVKLIPDVNNVVQS 221
++ ++ IK N + + + PDV VV++
Sbjct: 141 NLYALPILERDIKERNDISNLMVVSPDVGGVVRA 174
>gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 329
Score = 24.6 bits (52), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 5 NLNIRNFFYNYKGGMTILTAIFLPIIFLVLGMI 37
L F Y + ++ + +PIIFL+LG+I
Sbjct: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
>gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 228
Score = 23.9 bits (50), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 203 NAMLEEVKLIPDVNNVVQSGLVTF 226
N+M E VK+I D ++Q G+ F
Sbjct: 140 NSMFEFVKVIRDSGGIIQDGIGLF 163
>gi|254780982|ref|YP_003065395.1| putative homoserine/homoserine lactoneefflux protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 202
Score = 23.1 bits (48), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 141 FCTFIPWYTNSRHIVMP---ITSSVKVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDM 197
F +P Y N H ++P I S V+ DA + M L S+ F S KI
Sbjct: 128 FMAMVPAYLNMNHYILPQSLILSLTMVS--VDAMVLMTFSLICSKLRTLFSSSKFVKIQN 185
Query: 198 AIKSINAMLEEVKLIPD 214
+ ++ +L ++++ +
Sbjct: 186 RVSAVVFLLLALRIVAN 202
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.323 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 241,625
Number of Sequences: 1233
Number of extensions: 10114
Number of successful extensions: 45
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 15
length of query: 374
length of database: 328,796
effective HSP length: 75
effective length of query: 299
effective length of database: 236,321
effective search space: 70659979
effective search space used: 70659979
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 39 (19.6 bits)