Query gi|254780935|ref|YP_003065348.1| rare lipoprotein A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 276
No_of_seqs 213 out of 949
Neff 3.6
Searched_HMMs 33803
Date Wed Jun 1 19:06:40 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780935.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1bw3_A Barwin, basic barley S 99.7 5E-19 1.5E-23 135.7 -5.2 99 75-176 10-113 (125)
2 >3d30_A YOAJ, expansin like pr 99.6 2E-15 5.8E-20 113.6 7.2 97 85-181 4-107 (109)
3 >2hcz_X Beta-expansin 1A; doma 98.1 6.3E-05 1.9E-09 49.2 10.3 94 88-181 20-139 (142)
4 >1n10_A PHL P I, pollen allerg 97.6 0.00071 2.1E-08 42.8 9.0 94 88-181 20-139 (143)
5 >1wc2_A Endoglucanase; hydrola 97.2 0.0016 4.7E-08 40.7 6.9 92 88-181 15-156 (181)
6 >3czb_A Putative transglycosyl 95.5 0.044 1.3E-06 31.8 6.2 101 69-184 69-181 (189)
7 >2pnw_A AGR_C_15P, membrane-bo 92.4 0.42 1.2E-05 25.8 6.0 84 100-183 271-364 (380)
8 >2ae0_X Membrane-bound lytic m 90.2 0.59 1.7E-05 24.9 5.0 85 99-183 98-193 (202)
9 >2g5d_A GNA33; hydrolase, beta 89.6 1.3 3.8E-05 22.9 6.3 92 89-182 115-216 (225)
10 >3frn_A Flagellar protein FLGA 75.4 4.7 0.00014 19.4 4.3 32 116-147 24-55 (71)
11 >1w6g_A Phenylethylamine oxida 56.1 11 0.00032 17.2 3.1 55 94-150 38-93 (108)
12 >2pn0_A Prokaryotic transcript 49.1 16 0.00048 16.1 7.6 49 122-170 3-53 (87)
13 >3bmb_A Regulator of nucleosid 42.3 21 0.00061 15.4 7.7 62 122-184 3-77 (85)
14 >1grj_A GREA protein; transcri 39.9 23 0.00067 15.2 5.8 53 123-175 4-58 (75)
15 >2f23_A Anti-cleavage anti-GRE 38.7 24 0.0007 15.1 7.1 54 122-175 3-60 (76)
16 >1p99_A Hypothetical protein P 32.4 11 0.00032 17.1 0.0 29 1-29 1-29 (183)
17 >1kb0_A Quinohemoprotein alcoh 31.6 23 0.00067 15.2 1.5 51 59-115 57-109 (124)
18 >2k5h_A Conserved protein; str 30.4 32 0.00095 14.3 4.6 55 89-147 44-99 (101)
19 >1b7y_B Phers, protein (phenyl 29.5 33 0.00099 14.2 2.5 39 120-158 4-45 (75)
20 >3jyw_Q 60S ribosomal protein 28.1 22 0.00066 15.3 1.0 50 105-155 34-89 (116)
21 >2z04_A Phosphoribosylaminoimi 28.0 18 0.00053 15.8 0.5 49 99-147 22-70 (91)
22 >1fw8_A PGK P72, phosphoglycer 26.7 10 0.0003 17.4 -1.0 86 98-183 75-195 (200)
23 >3fuy_A HFX_CASS1, putative in 25.8 38 0.0011 13.8 1.8 39 120-158 27-65 (179)
24 >3gqj_A Cell inhibiting factor 25.4 40 0.0012 13.7 2.3 29 130-159 44-72 (165)
25 >3efy_A CIF (cell cycle inhibi 22.3 45 0.0013 13.4 2.3 28 130-158 46-73 (195)
26 >3i9v_3 NADH-quinone oxidoredu 22.2 43 0.0013 13.5 1.5 46 103-148 30-75 (104)
27 >3k6v_A Solute-binding protein 21.5 23 0.00067 15.2 0.0 31 1-31 1-32 (185)
28 >1kv9_A Type II quinohemoprote 20.6 49 0.0015 13.1 2.3 44 66-115 18-67 (82)
29 >3jwd_A HIV-1 GP120 envelope g 20.4 50 0.0015 13.1 1.9 13 174-186 166-178 (189)
No 1
>>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} (A:)
Probab=99.67 E-value=5e-19 Score=135.65 Aligned_cols=99 Identities=17% Similarity=0.112 Sum_probs=85.9
Q ss_pred CEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCEECCC----CCEEECCCCCCCCEEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 488962578782467998885684168706588722461----0102036689984899998899857999966888886
Q gi|254780935|r 75 GRWYVPRQYTAYAAVGMASWYGKAFHGRLTANGEVYGTE----YITAAHPTLPLPSYVRVTNMENGISLVVRVNDRGPYH 150 (276)
Q Consensus 75 Gk~Y~P~~~~~y~~~G~ASwYg~~f~G~~TAnGE~~~~~----~lTAAH~tLPl~s~VrVTNl~nGrsvvVrVNDRGPf~ 150 (276)
+.+|.|.....|...|.|+|||..++|..+++++.|+.. .++.+|..+++|+.++|||+.|||+|+|+|+||+|
T Consensus 10 ~~~~~~a~at~y~~~G~at~yg~~g~G~~~~~~~~~~~~~aa~s~~~~~~~~~CG~c~~Vt~~~~gksV~v~V~D~cp-- 87 (125)
T 1bw3_A 10 YHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCA-- 87 (125)
T ss_dssp CCCSSCGGGTTCTTSTTTCCTTHHHHTTSCHHHHHHSCCEESCSTTCCCSGGGTTCEEEEEETTTTEEEEEEEEECCS--
T ss_pred EEECCCCCCCCCCCHHHHHHHEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCC--
T ss_conf 764176646733116665431010237986402368875477637787575553322786532668788999975036--
Q ss_pred CCEEEECCH-HHHHHHCCCCCCEEEEE
Q ss_conf 961877588-99987097325818999
Q gi|254780935|r 151 SNRLIDLSN-AAAKILRVEERGVSKVH 176 (276)
Q Consensus 151 ~gRiIDLS~-~AA~~Lg~~~~Gva~V~ 176 (276)
++.||||. +|+++|++...|+..++
T Consensus 88 -~~~iDLS~~aAf~~lg~~~~g~~~G~ 113 (125)
T 1bw3_A 88 -NGGLDLDWDTVFTKIDTNGIGYQQGH 113 (125)
T ss_dssp -SSSCCSCSSSSHHHHCSSCHHHHHSE
T ss_pred -CCCCCCCCHHHHHEECCCCCCCCCCC
T ss_conf -89885670765401467883100662
No 2
>>3d30_A YOAJ, expansin like protein; peptidoglycan associated protein, unknown function, MLTA, bacteria autolysis, peptidoglycan-binding protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A (A:1-109)
Probab=99.60 E-value=2e-15 Score=113.65 Aligned_cols=97 Identities=19% Similarity=0.093 Sum_probs=88.7
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCCEECCCCCEEECCCCCCCCEE-------EEEECCCCCEEEEEECCCCCCCCCEEEEC
Q ss_conf 82467998885684168706588722461010203668998489-------99988998579999668888869618775
Q gi|254780935|r 85 AYAAVGMASWYGKAFHGRLTANGEVYGTEYITAAHPTLPLPSYV-------RVTNMENGISLVVRVNDRGPYHSNRLIDL 157 (276)
Q Consensus 85 ~y~~~G~ASwYg~~f~G~~TAnGE~~~~~~lTAAH~tLPl~s~V-------rVTNl~nGrsvvVrVNDRGPf~~gRiIDL 157 (276)
+..+.|.|+||+...++.....|..+++..+.++|..|+.+... +|++..|||+|+|+|+||+|.-..+.|||
T Consensus 4 ~~~~~G~aT~Y~~~~~~gaCg~g~~~~~~~~~a~~~al~~~~~~~~~~CG~~v~v~~~gksv~v~V~D~Cp~c~~~~lDL 83 (109)
T 3d30_A 4 DDLHEGYATYTGSGYSGGAFLLDPIPSDMEITAINPADLNYGGVKAALAGSYLEVEGPKGKTTVYVTDLYPEGARGALDL 83 (109)
T ss_dssp TCCEEEEEEECSTTSSSCTTCCCCCCTTCCEEEECHHHHTGGGCTTTTTTCEEEEEETTEEEEEEEEEECTTCCTTCEEE
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECHHHHCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEEEC
T ss_conf 75267788887888888535788888775789939899477887701389889999099759999976389997884881
Q ss_pred CHHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 889998709732581899999985
Q gi|254780935|r 158 SNAAAKILRVEERGVSKVHVEYLG 181 (276)
Q Consensus 158 S~~AA~~Lg~~~~Gva~V~ve~lg 181 (276)
|.+|+++|+....|+.+|+.+++-
T Consensus 84 S~~aF~~la~~~~G~~~v~w~~V~ 107 (109)
T 3d30_A 84 SPNAFRKIGNMKDGKINIKWRVVK 107 (109)
T ss_dssp CHHHHHHHSCGGGSSEEEEEEEEC
T ss_pred CHHHHHHHHCCCCCCEEEEEEEEC
T ss_conf 999998762557660069999946
No 3
>>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin like beta-sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} (X:1-142)
Probab=98.06 E-value=6.3e-05 Score=49.25 Aligned_cols=94 Identities=23% Similarity=0.174 Sum_probs=66.3
Q ss_pred EEEEEEEECCC-CCCCC---CCCCCE----ECCCCCEEEC------CCCCCCCEEEEEECC----CCCEEEEEECCCCC-
Q ss_conf 67998885684-16870---658872----2461010203------668998489999889----98579999668888-
Q gi|254780935|r 88 AVGMASWYGKA-FHGRL---TANGEV----YGTEYITAAH------PTLPLPSYVRVTNME----NGISLVVRVNDRGP- 148 (276)
Q Consensus 88 ~~G~ASwYg~~-f~G~~---TAnGE~----~~~~~lTAAH------~tLPl~s~VrVTNl~----nGrsvvVrVNDRGP- 148 (276)
..|.|+||+.. ..|-- -|.|-. .-...+.+|. .....+-..+|+..+ ++++|.|+|.||.|
T Consensus 20 ~~g~aT~Y~~~~~~~~~~~~GACg~~~~~~~p~~~~~aA~s~~~~~~g~~CG~c~~v~c~~~~~~~~~sv~V~V~D~Cp~ 99 (142)
T 2hcz_X 20 LTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYE 99 (142)
T ss_dssp EEEEEEECSCTTSCSSTTSCCTTCCCCTTSTTTTTCEEEECHHHHGGGTSTTCEEEEECCSSSSBCSSCEEEEEEEECCC
T ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCC
T ss_conf 51588897999888667877226788666688874788807789436777865668775889743699879999855799
Q ss_pred CCCCEEEECCHHHHHHHCC-------CCCCEEEEEEEEEE
Q ss_conf 8696187758899987097-------32581899999985
Q gi|254780935|r 149 YHSNRLIDLSNAAAKILRV-------EERGVSKVHVEYLG 181 (276)
Q Consensus 149 f~~gRiIDLS~~AA~~Lg~-------~~~Gva~V~ve~lg 181 (276)
--...-+|||..|+.+|+- ...|+.+|..+.+.
T Consensus 100 ~c~~~~lDLS~~AF~~iA~~~~~~~~~~~G~i~v~wr~V~ 139 (142)
T 2hcz_X 100 PIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVR 139 (142)
T ss_dssp TTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEEC
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf 9986120578678653202232330014864557768974
No 4
>>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, double-PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} (A:1-143)
Probab=97.56 E-value=0.00071 Score=42.79 Aligned_cols=94 Identities=20% Similarity=0.194 Sum_probs=64.7
Q ss_pred EEEEEEEECCCC-CCC---CCCCCC--E--ECCCCCEEECC------CCCCCCEEEEEECC----CCCEEEEEECCCCCC
Q ss_conf 679988856841-687---065887--2--24610102036------68998489999889----985799996688888
Q gi|254780935|r 88 AVGMASWYGKAF-HGR---LTANGE--V--YGTEYITAAHP------TLPLPSYVRVTNME----NGISLVVRVNDRGPY 149 (276)
Q Consensus 88 ~~G~ASwYg~~f-~G~---~TAnGE--~--~~~~~lTAAH~------tLPl~s~VrVTNl~----nGrsvvVrVNDRGPf 149 (276)
..|.|+||+..- .+- .-|.|- . .-...++||-. ..-.|-..+|+... +|++|+|+|.|+.|.
T Consensus 20 ~~g~aT~Yg~~~g~~~~~~~GaCg~~~~~~~p~~~~~aA~s~~~~~~g~~CG~c~~v~c~~~~~~~~~sv~V~VtD~CP~ 99 (143)
T 1n10_A 20 LDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEE 99 (143)
T ss_dssp EEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSSTTBCSCCEEEEEEEECSS
T ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHCCHHHCCCCEEEECCCCCCCCCCCEEEEEEECCCC
T ss_conf 56688787998888777887247778656578875787649768245233357779987899864699769999857888
Q ss_pred -CCCEEEECCHHHHHHHCC-------CCCCEEEEEEEEEE
Q ss_conf -696187758899987097-------32581899999985
Q gi|254780935|r 150 -HSNRLIDLSNAAAKILRV-------EERGVSKVHVEYLG 181 (276)
Q Consensus 150 -~~gRiIDLS~~AA~~Lg~-------~~~Gva~V~ve~lg 181 (276)
-...-+|||..|+.+|.- .+.|+.+|..+.+.
T Consensus 100 ~~~~~~~dls~~aF~~~a~~~~~i~~~~~G~v~i~~r~V~ 139 (143)
T 1n10_A 100 PIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVK 139 (143)
T ss_dssp CSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 7777765667789876423233322114876766899975
No 5
>>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} (A:)
Probab=97.16 E-value=0.0016 Score=40.69 Aligned_cols=92 Identities=14% Similarity=0.193 Sum_probs=64.5
Q ss_pred EEEEEEEECCCCCCCCCCCCCEE-------CCCCCEEECCC------------CCCCCEEEEEEC-----------CCCC
Q ss_conf 67998885684168706588722-------46101020366------------899848999988-----------9985
Q gi|254780935|r 88 AVGMASWYGKAFHGRLTANGEVY-------GTEYITAAHPT------------LPLPSYVRVTNM-----------ENGI 137 (276)
Q Consensus 88 ~~G~ASwYg~~f~G~~TAnGE~~-------~~~~lTAAH~t------------LPl~s~VrVTNl-----------~nGr 137 (276)
..|.|+||+....|. .--|... ....++||-.+ .-.|.-.+|+-. ..++
T Consensus 15 ~~g~AT~Yg~~~gGa-CgyG~~~~~~~~~~~~g~~~AA~s~~lf~~~~~~~~G~~CG~Cyev~c~~~~~~~~~~~~~~~~ 93 (181)
T 1wc2_A 15 SCASTTNYHDSHKGA-CGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTTGGYVPGQGGPVREGL 93 (181)
T ss_dssp EEEEEEEECCCBCTT-TTCSCSSSSBCCSSGGGSCEEEEEHHHHCTTCCSSSCTTTTCEEEEEEEEEECTTSCCCCCTTC
T ss_pred CCCCEEEECCCCCCC-CCCCCCCCCCCCCCCCCCEEEECCHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 675246867999867-7777377877433477636765278883778753345334553899977898777688778898
Q ss_pred EEEEEECCCCCCCC--------------------CEEEECCHHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 79999668888869--------------------618775889998709732581899999985
Q gi|254780935|r 138 SLVVRVNDRGPYHS--------------------NRLIDLSNAAAKILRVEERGVSKVHVEYLG 181 (276)
Q Consensus 138 svvVrVNDRGPf~~--------------------gRiIDLS~~AA~~Lg~~~~Gva~V~ve~lg 181 (276)
+|+|+|.|+.|-.. -.-+|||..|+++|+. ..|+..|+.+.+.
T Consensus 94 sv~V~VtD~CP~~~~~~~wC~~~~~~~~~~s~~a~~h~DLs~~Af~~ia~-~~G~i~i~yr~V~ 156 (181)
T 1wc2_A 94 SKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLENGRSQVTGM-GWNNPETTWEVVN 156 (181)
T ss_dssp EEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEECTTSTTGGG-TCSSEEEEEEEEC
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCEEEEEEEC
T ss_conf 58999975699888988745885223444567874224142899997552-1796436899952
No 6
>>3czb_A Putative transglycosylase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Caulobacter crescentus CB15} (A:1-86,A:249-351)
Probab=95.51 E-value=0.044 Score=31.83 Aligned_cols=101 Identities=16% Similarity=0.055 Sum_probs=70.8
Q ss_pred CCEEECCEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCEECCCCCEEECCC-CCCCCEEEEEEC-----CCCC--EEE
Q ss_conf 98698248896257878246799888568416870658872246101020366-899848999988-----9985--799
Q gi|254780935|r 69 KPYQIMGRWYVPRQYTAYAAVGMASWYGKAFHGRLTANGEVYGTEYITAAHPT-LPLPSYVRVTNM-----ENGI--SLV 140 (276)
Q Consensus 69 ~PY~v~Gk~Y~P~~~~~y~~~G~ASwYg~~f~G~~TAnGE~~~~~~lTAAH~t-LPl~s~VrVTNl-----~nGr--svv 140 (276)
.||+|.| .+.|+.+=|=+ .|-.+|.|....+..--|.-+. +||||.|-|.-. .+++ .-+
T Consensus 69 ~p~~i~~-----------~~~g~~TGYyE--~Gp~GA~GvpLt~~rSiAVDp~~iPlGt~v~i~~~~p~~~~~~~~~~rl 135 (189)
T 3czb_A 69 RVEAVDG-----------GGDGLLTAYFA--KEPAGAAGVALPPGRAIAVDPGYHAYGGFYWLDAAAPKLVGAFPVYRRA 135 (189)
T ss_dssp EEEEGGG-----------GCCEEEEEECC--SCCBCTTSSBCCTTSEEECCTTTCCTTCEEEEEEC-------CCCEEEE
T ss_pred EEEEECC-----------CCCEEEEEECC--CCCCEECCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCE
T ss_conf 9997659-----------98607989444--9976516775788736872863147978068975677768987620266
Q ss_pred EEECCCCCCCCCE-EEECCH---HHHHHHCCCCCCEEEEEEEEEECCC
Q ss_conf 9966888886961-877588---9998709732581899999985286
Q gi|254780935|r 141 VRVNDRGPYHSNR-LIDLSN---AAAKILRVEERGVSKVHVEYLGMAL 184 (276)
Q Consensus 141 VrVNDRGPf~~gR-iIDLS~---~AA~~Lg~~~~Gva~V~ve~lg~a~ 184 (276)
+-+-|.|--.+|. -+|+=. ..|..+ ...|..+++|-+|.+-.
T Consensus 136 ~iAqDTGgAIkG~~R~Dif~G~g~~A~~~--Ag~~~~~g~v~iLlPk~ 181 (189)
T 3czb_A 136 VTALDTGGAIKGEVRADLYMGSGAVAGVE--AGRVRHTLRLYRLTPNP 181 (189)
T ss_dssp EEEEECCTTCCSSSEEEEECCSSHHHHHH--HTTCEEEEEEEEEEECC
T ss_pred EEEEECCCCCCCCCEEEEEECCCHHHHHH--HHCCCCCEEEEEEEECC
T ss_conf 99974476425897069975088899998--75436753699998789
No 7
>>2pnw_A AGR_C_15P, membrane-bound lytic murein transglycosylase; structural genomics, PSI-2, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} (A:)
Probab=92.35 E-value=0.42 Score=25.81 Aligned_cols=84 Identities=10% Similarity=-0.038 Sum_probs=61.7
Q ss_pred CCCCCCCCCEECCCCCEEECCC-CCCCCEEEEEECC-----CC--CEEEEEECCCCCCCCCE-EEECCHHHH-HHHCCCC
Q ss_conf 6870658872246101020366-8998489999889-----98--57999966888886961-877588999-8709732
Q gi|254780935|r 100 HGRLTANGEVYGTEYITAAHPT-LPLPSYVRVTNME-----NG--ISLVVRVNDRGPYHSNR-LIDLSNAAA-KILRVEE 169 (276)
Q Consensus 100 ~G~~TAnGE~~~~~~lTAAH~t-LPl~s~VrVTNl~-----nG--rsvvVrVNDRGPf~~gR-iIDLS~~AA-~~Lg~~~ 169 (276)
.|..||+|....+...-|.-+. +||||.|.|.... +| -.-++.+.|+|-..+|. .||+=.+.- +...+-.
T Consensus 271 ~g~~gA~Gv~lt~~rsIAVDp~viPlGt~v~I~~~~~~~~~~~~~~~~~~vAqDTGgAIkG~~riDif~Gsg~eA~~~Ag 350 (380)
T 2pnw_A 271 MGPIAAAKVPLVAGRALAVDRLIHTFGLPFFIHAPTLTHLDDGKPFARLMLALDTGSAIVGPARGDIFTGSGFEAGELAG 350 (380)
T ss_dssp -CCBCTTSSBCCTTTEEECCTTTCCTTCEEEEEETTCCTTTTTSCEEEEEEEEECCTTCCSTTEEEEEEEESHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHH
T ss_conf 88755158645557125526120578866999566766678887301469996446523689716997508699999860
Q ss_pred CCEEEEEEEEEECC
Q ss_conf 58189999998528
Q gi|254780935|r 170 RGVSKVHVEYLGMA 183 (276)
Q Consensus 170 ~Gva~V~ve~lg~a 183 (276)
.|...++|-+|.+-
T Consensus 351 ~~~~~~~v~iL~pk 364 (380)
T 2pnw_A 351 TVRNEADFYILLPR 364 (380)
T ss_dssp TCEEEEEEEEEEEH
T ss_pred CCCCCEEEEEEEEC
T ss_conf 86874489999880
No 8
>>2ae0_X Membrane-bound lytic murein transglycosylase A; double-PSI beta-barrel, small mixed parallel/antiparallel six stranded beta barrel; 2.00A {Escherichia coli} (X:1-104,X:248-345)
Probab=90.19 E-value=0.59 Score=24.92 Aligned_cols=85 Identities=15% Similarity=0.055 Sum_probs=57.9
Q ss_pred CCCCCCCCCCEECCCCCEEECCC-CCCCCEEEEE--ECCC-C----CEE--EEEECCCCCCCCCEEEECCHHH-HHHHCC
Q ss_conf 16870658872246101020366-8998489999--8899-8----579--9996688888696187758899-987097
Q gi|254780935|r 99 FHGRLTANGEVYGTEYITAAHPT-LPLPSYVRVT--NMEN-G----ISL--VVRVNDRGPYHSNRLIDLSNAA-AKILRV 167 (276)
Q Consensus 99 f~G~~TAnGE~~~~~~lTAAH~t-LPl~s~VrVT--Nl~n-G----rsv--vVrVNDRGPf~~gRiIDLS~~A-A~~Lg~ 167 (276)
|.|-.|-+|....+..--|+-++ +||||.|.+. .+++ | +.. ++.+-|+|--.+|..||+=.+. .+...+
T Consensus 98 ~tgyy~psGvpLtp~rSVAvDpsvIPlGT~v~Ie~~~~~~~g~~~g~~~~gl~vAqDTGGAIKG~riDIy~G~G~eA~~~ 177 (202)
T 2ae0_X 98 FTGYYTPSAVPLVGRASVASDRSIIPPGTTLLAEVPLLDNNGKFNGQYELRLMVALDVGGAIKGQHFDIYQGIGPEAGHR 177 (202)
T ss_dssp EEEEEECTSCBCCTTSEEECCTTTSCTTCEEEEEEEEECTTSCEEEEEEEEEEEEEECCTTCCTTCEEEEEEESHHHHHH
T ss_pred EEEEECECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCHHHHHH
T ss_conf 99950215643568864246886248987658853442557876775442069984155534754026876287999998
Q ss_pred CCCCEEEEEEEEEECC
Q ss_conf 3258189999998528
Q gi|254780935|r 168 EERGVSKVHVEYLGMA 183 (276)
Q Consensus 168 ~~~Gva~V~ve~lg~a 183 (276)
...|...++|.+|.+.
T Consensus 178 AG~g~~~g~V~iL~p~ 193 (202)
T 2ae0_X 178 AGWYNHYGRVWVLKTA 193 (202)
T ss_dssp HCSSCEEEEEEEEEEC
T ss_pred HHCCCCCEEEEEEEEC
T ss_conf 7453684689999745
No 9
>>2g5d_A GNA33; hydrolase, beta barrel; 1.95A {Neisseria gonorrhoeae fa 1090} (A:1-124,A:322-422)
Probab=89.64 E-value=1.3 Score=22.86 Aligned_cols=92 Identities=18% Similarity=0.130 Sum_probs=63.6
Q ss_pred EEEE-EEECCCCCCCCCCCCCEECCCCCEEE-CCCCCCCCEEEEEE--CCCCC--EEEEEECCCCCCCCCE-EEEC---C
Q ss_conf 7998-88568416870658872246101020-36689984899998--89985--7999966888886961-8775---8
Q gi|254780935|r 89 VGMA-SWYGKAFHGRLTANGEVYGTEYITAA-HPTLPLPSYVRVTN--MENGI--SLVVRVNDRGPYHSNR-LIDL---S 158 (276)
Q Consensus 89 ~G~A-SwYg~~f~G~~TAnGE~~~~~~lTAA-H~tLPl~s~VrVTN--l~nGr--svvVrVNDRGPf~~gR-iIDL---S 158 (276)
.|.. -||-+.-.|..+|.|.......--|. .+.+||||.|.|.- ++.+. .-++.+-|+|--++|+ -||+ +
T Consensus 115 ~gf~TgYfeP~~~Gp~GA~GvpLt~grSiAVDp~~iPlGt~v~I~~~~~~~~~~~~~l~iAqDTGgAIkG~~R~Dif~G~ 194 (225)
T 2g5d_A 115 AGTVTGYYEPGGDGPVGALGTPLMGEYAGAIDRHYITLGAPLFVATAHPVTRKALNRLIMAQDTGSAIKGAVRVDYFWGY 194 (225)
T ss_dssp CEEEEEEEEC--CCCBCTTSSBCCTTSEEEECTTTSCTTCEEEEEEECTTTCSEEEEEEEEEEECTTCCSSSEEEEEEEE
T ss_pred CCCCCCCCCECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECC
T ss_conf 63223344538889864268867777047757863678872789646877788510279986347642588706987528
Q ss_pred HHHHHHHCCCCCCEEEEEEEEEEC
Q ss_conf 899987097325818999999852
Q gi|254780935|r 159 NAAAKILRVEERGVSKVHVEYLGM 182 (276)
Q Consensus 159 ~~AA~~Lg~~~~Gva~V~ve~lg~ 182 (276)
...|..++-..+ .+++|-+|..
T Consensus 195 g~~A~~~AG~~k--~~g~~~vLlp 216 (225)
T 2g5d_A 195 GDEAGELAGKQK--TTGYVWQLLP 216 (225)
T ss_dssp SHHHHHHHHHCE--EEEEEEEEEE
T ss_pred CHHHHHHHHCCC--CCEEEEEEEC
T ss_conf 889999875325--7525999954
No 10
>>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima} (A:208-278)
Probab=75.41 E-value=4.7 Score=19.39 Aligned_cols=32 Identities=22% Similarity=0.092 Sum_probs=26.0
Q ss_pred EEECCCCCCCCEEEEEECCCCCEEEEEECCCC
Q ss_conf 02036689984899998899857999966888
Q gi|254780935|r 116 TAAHPTLPLPSYVRVTNMENGISLVVRVNDRG 147 (276)
Q Consensus 116 TAAH~tLPl~s~VrVTNl~nGrsvvVrVNDRG 147 (276)
.-|-..=-+|-.+||.|+++|+.+..+|.+.|
T Consensus 24 g~Al~~G~~Gd~IrVrN~~Sgkii~g~V~~~g 55 (71)
T 3frn_A 24 VEVLENGYLGETVRAMNVESRKYVFGRVERGP 55 (71)
T ss_dssp EEESSCBCTTCEEEEEC--CCCEEEEEEETTT
T ss_pred EEECCCCCCCCEEEEEECCCCCEEEEEEECCC
T ss_conf 89987889898899998899998999995699
No 11
>>1w6g_A Phenylethylamine oxidase; 3D-structure, copper, copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} (A:102-209)
Probab=56.06 E-value=11 Score=17.16 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=42.8
Q ss_pred EECC-CCCCCCCCCCCEECCCCCEEECCCCCCCCEEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 8568-41687065887224610102036689984899998899857999966888886
Q gi|254780935|r 94 WYGK-AFHGRLTANGEVYGTEYITAAHPTLPLPSYVRVTNMENGISLVVRVNDRGPYH 150 (276)
Q Consensus 94 wYg~-~f~G~~TAnGE~~~~~~lTAAH~tLPl~s~VrVTNl~nGrsvvVrVNDRGPf~ 150 (276)
|+|. .-.|++..-+-.|-...-++-|-..|+.-++-|.+|++++ +|+|.|||...
T Consensus 38 ~~g~~~~~~rRl~~~~~f~r~~~~~N~YA~Pieg~~~vvDl~~~k--Vv~i~D~~~~p 93 (108)
T 1w6g_A 38 VFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVSKE--VTRVIDTGVFP 93 (108)
T ss_dssp CCSCGGGTTSCEEEEEEEECSSTTCCGGGSBCTTEEEEEETTTTE--EEEEEECCCCC
T ss_pred CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCE--EEEEECCCCCC
T ss_conf 657765668769999988876998863555777627999677867--99996579868
No 12
>>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea} (A:55-141)
Probab=49.12 E-value=16 Score=16.08 Aligned_cols=49 Identities=10% Similarity=0.088 Sum_probs=39.6
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCC--CCCCCCEEEECCHHHHHHHCCCCC
Q ss_conf 8998489999889985799996688--888696187758899987097325
Q gi|254780935|r 122 LPLPSYVRVTNMENGISLVVRVNDR--GPYHSNRLIDLSNAAAKILRVEER 170 (276)
Q Consensus 122 LPl~s~VrVTNl~nGrsvvVrVNDR--GPf~~gRiIDLS~~AA~~Lg~~~~ 170 (276)
.-||+.|++.|+++++...+.+--. .-...++|=-+|+-+...||-..-
T Consensus 3 V~~Gs~V~~~d~~~~~~~~~~lVg~~ea~~~~~~iS~~SPlG~ALlG~~~G 53 (87)
T 2pn0_A 3 VTXNSTVRFRVESSAEEFXLTLVYPKDVDTSGEKISILAPVGSALLGLAQG 53 (87)
T ss_dssp CCTTCEEEEEETTTCCEEEEEEECGGGCCSSSCEEETTSTTHHHHTTCBTT
T ss_pred EEECCEEEEEECCCCCCEEEEECCCHHCCCCCCEEEEECHHHHHHHCCCCC
T ss_conf 988989999865666438999818056047798798876999997099889
No 13
>>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli} (A:52-136)
Probab=42.32 E-value=21 Score=15.44 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=46.6
Q ss_pred CCCCCEEEEEECCCCCEEEEEE---CCCCCCCCCEEEECCHHHHHHHCCCC---------CCE-EEEEEEEEECCC
Q ss_conf 8998489999889985799996---68888869618775889998709732---------581-899999985286
Q gi|254780935|r 122 LPLPSYVRVTNMENGISLVVRV---NDRGPYHSNRLIDLSNAAAKILRVEE---------RGV-SKVHVEYLGMAL 184 (276)
Q Consensus 122 LPl~s~VrVTNl~nGrsvvVrV---NDRGPf~~gRiIDLS~~AA~~Lg~~~---------~Gv-a~V~ve~lg~a~ 184 (276)
.-+||.|++.++++|....++| .+..| ..++|=-+|+-+...||... .|. -+++|.-+-..|
T Consensus 3 V~~Gs~V~~~~~~~~~~~~~~iV~p~ead~-~~~~IS~~SPlG~ALlG~~~Gd~v~~~~p~G~~~~~~I~~I~~~~ 77 (85)
T 3bmb_A 3 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTD-SNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQP 77 (85)
T ss_dssp CCTTCEEEEEETTTCCEEEEEEECGGGCCC-TTTEEETTSHHHHHHTTCBTTCEEEEEETTTEEEEEEEEEEEECT
T ss_pred EEECCEEEEEECCCCCEEEEEEECCCCCCC-CCCEEECCCHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEEECC
T ss_conf 986879999978766168999956300357-788642269899997299789999999899988999999999789
No 14
>>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} (A:84-158)
Probab=39.86 E-value=23 Score=15.20 Aligned_cols=53 Identities=21% Similarity=0.252 Sum_probs=42.0
Q ss_pred CCCCEEEEEECCCCCEEEEEE--CCCCCCCCCEEEECCHHHHHHHCCCCCCEEEE
Q ss_conf 998489999889985799996--68888869618775889998709732581899
Q gi|254780935|r 123 PLPSYVRVTNMENGISLVVRV--NDRGPYHSNRLIDLSNAAAKILRVEERGVSKV 175 (276)
Q Consensus 123 Pl~s~VrVTNl~nGrsvvVrV--NDRGPf~~gRiIDLS~~AA~~Lg~~~~Gva~V 175 (276)
-||+.|.+.+++++....+++ -+-.-...++|=-+|+-+...||-...-+..|
T Consensus 4 ~~g~~V~l~~~~~~~~~~~~iV~p~ea~~~~g~IS~~SPlG~ALlG~~~Gd~v~~ 58 (75)
T 1grj_A 4 IFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVI 58 (75)
T ss_dssp CTTCEEEEEETTTTEEEEEEEECTTTCBGGGTEEESSSHHHHHHTTCBTTCEECC
T ss_pred EEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEECCCCHHHHHHHCCCCCCEEEE
T ss_conf 6413899995476417999802543123654130468989999728999998999
No 15
>>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus HB27} (A:81-156)
Probab=38.74 E-value=24 Score=15.09 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=40.7
Q ss_pred CCCCCEEEEEECCCCCEEEEEEC--CCCCCCCC--EEEECCHHHHHHHCCCCCCEEEE
Q ss_conf 89984899998899857999966--88888696--18775889998709732581899
Q gi|254780935|r 122 LPLPSYVRVTNMENGISLVVRVN--DRGPYHSN--RLIDLSNAAAKILRVEERGVSKV 175 (276)
Q Consensus 122 LPl~s~VrVTNl~nGrsvvVrVN--DRGPf~~g--RiIDLS~~AA~~Lg~~~~Gva~V 175 (276)
.-|||.|++.|+++++....++- +.+-...+ +|=-+|+-+...||-..--...|
T Consensus 3 V~~gs~V~l~d~~~~~~~~~~iVgp~e~~~~~~~~~iS~~SPlG~ALlG~~~Gd~v~~ 60 (76)
T 2f23_A 3 IGLGSVVELEDPLSGERLSVQVVSPAEANVLDTPMKISDASPMGKALLGHRVGDVLSL 60 (76)
T ss_dssp CCTTCEEEEECTTTCCEEEEEEECGGGCBTTSSSEEEETTSHHHHHHTTCCTTCEEEE
T ss_pred EEEEEEEEEEECCCCEEEEEEEECCCCCCHHHCCCCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 9987799998436760499999077536843348743789988999728999999999
No 16
>>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} (A:1-119,A:232-295)
Probab=32.36 E-value=11 Score=17.14 Aligned_cols=29 Identities=3% Similarity=-0.198 Sum_probs=11.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 94312666899999999999853135877
Q gi|254780935|r 1 MKRFSCDCLLKGSVVCVVVLGMSSCFFSS 29 (276)
Q Consensus 1 ~~~~~~~~llk~si~~i~~l~lssCs~~~ 29 (276)
|+++.+.-.+.+.+++++++.+++|+++.
T Consensus 1 M~~r~~~~k~~~~~~~~~~l~l~~~g~~~ 29 (183)
T 1p99_A 1 MGHHHHHHDYDIPTTENLYFQGAHMGIQR 29 (183)
T ss_dssp -----------------------------
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 98655555567731788999998514789
No 17
>>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} (A:49-112,A:521-580)
Probab=31.56 E-value=23 Score=15.20 Aligned_cols=51 Identities=27% Similarity=0.305 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCC--EEECCEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCEECCCCC
Q ss_conf 667773035798--698248896257878246799888568416870658872246101
Q gi|254780935|r 59 PRGGGRYFLGKP--YQIMGRWYVPRQYTAYAAVGMASWYGKAFHGRLTANGEVYGTEYI 115 (276)
Q Consensus 59 p~~~~~y~vg~P--Y~v~Gk~Y~P~~~~~y~~~G~ASwYg~~f~G~~TAnGE~~~~~~l 115 (276)
|+-.....++.| |+++||.|+- ...|.-.|++-......+..|...-..+|
T Consensus 57 PKvd~~~~~~~P~tY~~dGkQYVa------v~aG~Gg~~~~~~~~~~~~~g~~l~afaL 109 (124)
T 1kb0_A 57 PQIDRSTGVAAPSTYMVDGRQYVS------VAVGWGGVYGLAARATERQGPGTVYTFVV 109 (124)
T ss_dssp CCCCGGGGCSCCEEEEETTEEEEE------EEECCCHHHHHHCCSCSCCCCCEEEEEEE
T ss_pred CCCCCCCCCCCCEEEEECCEEEEE------EEECCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 877765446267289989989999------99078852234555565788987999973
No 18
>>2k5h_A Conserved protein; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Methanothermobacterthermautotrophicus str} (A:)
Probab=30.41 E-value=32 Score=14.26 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=41.9
Q ss_pred EEEE-EEECCCCCCCCCCCCCEECCCCCEEECCCCCCCCEEEEEECCCCCEEEEEECCCC
Q ss_conf 7998-8856841687065887224610102036689984899998899857999966888
Q gi|254780935|r 89 VGMA-SWYGKAFHGRLTANGEVYGTEYITAAHPTLPLPSYVRVTNMENGISLVVRVNDRG 147 (276)
Q Consensus 89 ~G~A-SwYg~~f~G~~TAnGE~~~~~~lTAAH~tLPl~s~VrVTNl~nGrsvvVrVNDRG 147 (276)
+|.. .+..+.-.|+.--+|+.++.. +...++-|+.|+|+..++++-++-++++..
T Consensus 44 ~~~v~~~i~~~~~G~V~~~g~~W~A~----s~~~i~~G~~V~V~~v~G~~l~V~~~~~~~ 99 (101)
T 2k5h_A 44 KGVVMEAISPQNSGLVKVDGETWRAT----SGTVLDVGEEVSVKAIEGVKLVVEKLEEQK 99 (101)
T ss_dssp EEEEEECBCSSSCEEEEETTEEEEEE----CSSCBCTTCEEEEEEECSSSEEEEECCCCC
T ss_pred EEEEEEEECCCCEEEEEECCEEEEEE----ECCCCCCCCEEEEEEEECCEEEEEECCCCC
T ss_conf 89997970799809999999899998----499448999999999999999999886256
No 19
>>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer; HET: FYA; 2.50A {Thermus thermophilus} (B:191-208,B:268-324)
Probab=29.47 E-value=33 Score=14.16 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=29.3
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCC-CCC--CCEEEECC
Q ss_conf 6689984899998899857999966888-886--96187758
Q gi|254780935|r 120 PTLPLPSYVRVTNMENGISLVVRVNDRG-PYH--SNRLIDLS 158 (276)
Q Consensus 120 ~tLPl~s~VrVTNl~nGrsvvVrVNDRG-Pf~--~gRiIDLS 158 (276)
..||||--++|...+.+..++||--..| .|. +++-..|+
T Consensus 4 ~~~~~~~~~~~~~~~i~g~I~VR~A~~gE~l~tLDgke~~L~ 45 (75)
T 1b7y_B 4 EALPLPFALKVEDPEVGEGIAVRRAREGERLKTLDGVERTLH 45 (75)
T ss_dssp ECCCCSSEEEESCTTTBTEEEEEECCTTCEEEBTTSCEEECC
T ss_pred CCCCCCEEEEEECCCCCCCHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 246764346740333222100101478976503333211234
No 20
>>3jyw_Q 60S ribosomal protein L21(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_Q (Q:)
Probab=28.05 E-value=22 Score=15.25 Aligned_cols=50 Identities=22% Similarity=0.210 Sum_probs=32.4
Q ss_pred CCCCEECCCCCEEECCCCCCCCE----EEEEECCCCCEEEEEECCCC--CCCCCEEE
Q ss_conf 58872246101020366899848----99998899857999966888--88696187
Q gi|254780935|r 105 ANGEVYGTEYITAAHPTLPLPSY----VRVTNMENGISLVVRVNDRG--PYHSNRLI 155 (276)
Q Consensus 105 AnGE~~~~~~lTAAH~tLPl~s~----VrVTNl~nGrsvvVrVNDRG--Pf~~gRiI 155 (276)
.-|+..|-....+-|+-+|...| -+|.|. +++++.|.||+++ -+...||+
T Consensus 34 k~GD~VdIk~d~svqkGmPhk~yhGkTG~V~~v-~~~A~gV~v~k~vk~r~~~Kri~ 89 (116)
T 3jyw_Q 34 KVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNV-TKSSVGVIINKMVGNRYLEKRLN 89 (116)
T ss_dssp CTTCBCCBCCCSSSCTTCCCSTTSSCCCBCCCC-CSSSSSEEEECCCSSSSCCCEEE
T ss_pred CCCCEEEEEECCCEECCCCCCEECCCCEEEEEE-CCCEEEEEEEEEECCEECCEEEE
T ss_conf 599999997459745699843354776128866-68379999999889967257999
No 21
>>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus} (A:81-171)
Probab=28.01 E-value=18 Score=15.83 Aligned_cols=49 Identities=16% Similarity=0.110 Sum_probs=34.3
Q ss_pred CCCCCCCCCCEECCCCCEEECCCCCCCCEEEEEECCCCCEEEEEECCCC
Q ss_conf 1687065887224610102036689984899998899857999966888
Q gi|254780935|r 99 FHGRLTANGEVYGTEYITAAHPTLPLPSYVRVTNMENGISLVVRVNDRG 147 (276)
Q Consensus 99 f~G~~TAnGE~~~~~~lTAAH~tLPl~s~VrVTNl~nGrsvvVrVNDRG 147 (276)
-+|-.++.+.+++....-.+-..+.+|-+||-+....+...+..++|+-
T Consensus 22 ~~gip~p~~~~~~~~~~~~~~~~~g~P~vvKp~~~g~~g~gv~~~~~~~ 70 (91)
T 2z04_A 22 KHGFPVPEFLVIKRDEIIDALKSFKLPVVIKAEKLGYDGKGQYRIKKLE 70 (91)
T ss_dssp TTTCCCCCEEEC--------------CEEEECC----------------
T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHHH
T ss_conf 1478742211232054421111024663010000222457401111013
No 22
>>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycolysis, mutant, permutation, permuted sequence, protein folding; 2.30A {Saccharomyces cerevisiae} (A:1-131,A:347-416)
Probab=26.70 E-value=10 Score=17.37 Aligned_cols=86 Identities=17% Similarity=0.269 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCEECCCCCEEECCCCC-------CCC-----------------------EEEEEECC-CCCEEEEEECCC
Q ss_conf 41687065887224610102036689-------984-----------------------89999889-985799996688
Q gi|254780935|r 98 AFHGRLTANGEVYGTEYITAAHPTLP-------LPS-----------------------YVRVTNME-NGISLVVRVNDR 146 (276)
Q Consensus 98 ~f~G~~TAnGE~~~~~~lTAAH~tLP-------l~s-----------------------~VrVTNl~-nGrsvvVrVNDR 146 (276)
.|.-.+-.-|++|=+++..+||+.-+ +++ +..+.+++ +||.|.|||-=-
T Consensus 75 ~fa~~LA~l~DvyVnDAFg~aHR~haS~~gi~~~~~~aG~LmekEi~~L~~~~~~p~m~~~ti~d~d~~gK~VlvRvD~N 154 (200)
T 1fw8_A 75 KFRHELSSLADVYINDAFGTAHRAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTSSKLSVQDLDLKDKRVFIRVDFN 154 (200)
T ss_dssp HHHHHHHTTCSEEEECCGGGTTSCCHHHHCCCCSCEEECHHHHHHHHHHHHHHHSCSSCSCBGGGSCCTTCEEEEECCCC
T ss_pred HHHHHHHHHCCEEEECCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCEEEEEEECC
T ss_conf 99999885488998743000112344443424675655267899999999986378331301023234684799998526
Q ss_pred CCCCCCEEEECCHHHHHH--HCC-CCCCEEEEEE-EEEECC
Q ss_conf 888696187758899987--097-3258189999-998528
Q gi|254780935|r 147 GPYHSNRLIDLSNAAAKI--LRV-EERGVSKVHV-EYLGMA 183 (276)
Q Consensus 147 GPf~~gRiIDLS~~AA~~--Lg~-~~~Gva~V~v-e~lg~a 183 (276)
-|...|.|.|=++=-|.. |-. .++|--.|-+ -.+|++
T Consensus 155 vPi~~g~I~Dd~RI~a~lpTI~~ll~~gak~vIL~SHlGRP 195 (200)
T 1fw8_A 155 VPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGRP 195 (200)
T ss_dssp CCBSSSSBSCTHHHHHHHHHHHHHHHTCCSEEEEECCCSCC
T ss_pred CCCCCCCCCCHHHHHHHCCHHHHHHHCCCCEEEEHHHCCCC
T ss_conf 76660104306778752315799985598289868643899
No 23
>>3fuy_A HFX_CASS1, putative integron gene cassette protein; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 2.00A {Uncultured bacterium} (A:)
Probab=25.75 E-value=38 Score=13.83 Aligned_cols=39 Identities=28% Similarity=0.403 Sum_probs=29.7
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECC
Q ss_conf 668998489999889985799996688888696187758
Q gi|254780935|r 120 PTLPLPSYVRVTNMENGISLVVRVNDRGPYHSNRLIDLS 158 (276)
Q Consensus 120 ~tLPl~s~VrVTNl~nGrsvvVrVNDRGPf~~gRiIDLS 158 (276)
.++--||.|.+...+||.-.++||...|=-...--|||-
T Consensus 27 tsflspslvtirdfdngqfavlrigrtgfpadkgdidlc 65 (179)
T 3fuy_A 27 TSFLSPSLVTIRDFDNGQFAVLRIGRTGFPADKGDIDLC 65 (179)
T ss_dssp EEEEETTEEEEEETTTTEEEEEECTTTCCCCCHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCHHHH
T ss_conf 332586157988527982899980366788766636777
No 24
>>3gqj_A Cell inhibiting factor (CIF); protease-like, unknown function; 1.85A {Photorhabdus luminescens subsp} (A:71-235)
Probab=25.36 E-value=40 Score=13.71 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=20.5
Q ss_pred EEECCCCCEEEEEECCCCCCCCCEEEECCH
Q ss_conf 998899857999966888886961877588
Q gi|254780935|r 130 VTNMENGISLVVRVNDRGPYHSNRLIDLSN 159 (276)
Q Consensus 130 VTNl~nGrsvvVrVNDRGPf~~gRiIDLS~ 159 (276)
|..|..-++-|+||||++- -+--+||+-.
T Consensus 44 l~~l~s~knyV~~VNDgrL-GH~fliDiP~ 72 (165)
T 3gqj_A 44 VDQLSSAKNYVALVNDRRL-GHMFLIDIPS 72 (165)
T ss_dssp HTTCCTTSEEEEEEEETTT-TEEEEEEECC
T ss_pred HHCCCCCCCEEEEECCCCC-CEEEEEECCC
T ss_conf 8434001267999737875-3138986578
No 25
>>3efy_A CIF (cell cycle inhibiting factor); bacteria, virulence factor, type III secretion, E. coli, plasmid; 1.70A {Escherichia coli} (A:)
Probab=22.33 E-value=45 Score=13.35 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=19.8
Q ss_pred EEECCCCCEEEEEECCCCCCCCCEEEECC
Q ss_conf 99889985799996688888696187758
Q gi|254780935|r 130 VTNMENGISLVVRVNDRGPYHSNRLIDLS 158 (276)
Q Consensus 130 VTNl~nGrsvvVrVNDRGPf~~gRiIDLS 158 (276)
|..|..-++-|++|||++- -.--+||+-
T Consensus 46 l~~L~s~knyV~~VNDgrL-GH~flIDiP 73 (195)
T 3efy_A 46 LSCMPECKSFVLRVNDGAL-GHAYIVDIP 73 (195)
T ss_dssp HHTCCTTSEEEEEEEETTT-TEEEEEEEC
T ss_pred HHCCCCCCCEEEEECCCCC-CEEEEEECC
T ss_conf 8524010467999837874-314898667
No 26
>>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_3* 3iam_3* 3ias_3* (3:680-783)
Probab=22.15 E-value=43 Score=13.47 Aligned_cols=46 Identities=20% Similarity=0.039 Sum_probs=30.5
Q ss_pred CCCCCCEECCCCCEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC
Q ss_conf 0658872246101020366899848999988998579999668888
Q gi|254780935|r 103 LTANGEVYGTEYITAAHPTLPLPSYVRVTNMENGISLVVRVNDRGP 148 (276)
Q Consensus 103 ~TAnGE~~~~~~lTAAH~tLPl~s~VrVTNl~nGrsvvVrVNDRGP 148 (276)
.........++.-.|+..-+.=|..|+|+|...--.+.|+++++=+
T Consensus 30 ~~~~~~~v~in~~dA~~lGi~dgd~V~v~s~~G~i~~~~~~~~~v~ 75 (104)
T 3i9v_3 30 QEAARAELWAHPETARAEALPEGAQVAVETPFGRVEARVVHREDVP 75 (104)
T ss_dssp HHHTCCEEEECHHHHHHTTCCTTCEEEEEETTEEEEEEEEECTTSC
T ss_pred HHCCCCEEEECHHHHHHCCCCCCCEEEEECCCEEEEEEEEECCCCC
T ss_conf 2069987998999998769999899999869889999999889868
No 27
>>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic binding protein, ABC transporter, transport protein, ligand; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A (A:1-123,A:293-354)
Probab=21.50 E-value=23 Score=15.19 Aligned_cols=31 Identities=10% Similarity=0.004 Sum_probs=16.9
Q ss_pred CCCCCHHHHH-HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9431266689-999999999985313587766
Q gi|254780935|r 1 MKRFSCDCLL-KGSVVCVVVLGMSSCFFSSTY 31 (276)
Q Consensus 1 ~~~~~~~~ll-k~si~~i~~l~lssCs~~~~~ 31 (276)
||+......+ .+.+++++.++|++|++....
T Consensus 1 Mkk~~~~k~~~~~~~~~~~~~~lagC~~~~~~ 32 (185)
T 3k6v_A 1 MKHHHHHHPMSDYDIPTTENLYFQGAMADNQP 32 (185)
T ss_dssp --------------------------------
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHEECCCCC
T ss_conf 98654678753465242666664310125889
No 28
>>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} (A:38-55,A:502-565)
Probab=20.59 E-value=49 Score=13.13 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=22.3
Q ss_pred CCCCC--EEECCEEEEECCCCCCEEEEEEEEEC----CCCCCCCCCCCCEECCCCC
Q ss_conf 35798--69824889625787824679988856----8416870658872246101
Q gi|254780935|r 66 FLGKP--YQIMGRWYVPRQYTAYAAVGMASWYG----KAFHGRLTANGEVYGTEYI 115 (276)
Q Consensus 66 ~vg~P--Y~v~Gk~Y~P~~~~~y~~~G~ASwYg----~~f~G~~TAnGE~~~~~~l 115 (276)
.++.| |+|+|+.|+- ...|.-.|++ ....-+.+.+|-++-..+|
T Consensus 18 ~Ia~PiTY~vdGkQYVA------V~sG~GG~~gl~gg~~~~~~~~~~gG~L~VFkL 67 (82)
T 1kv9_A 18 TVAAPMTFELAGRQYVA------IMAGWGGVATLTGGESMNLPGMKNRSRLLVFAL 67 (82)
T ss_dssp CCSCCEEEEETTEEEEE------EEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEE
T ss_pred CCCCCEEEEECCEEEEE------EECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 93675038769979999------991778755446754211145798888999995
No 29
>>3jwd_A HIV-1 GP120 envelope glycoprotein; HIV-1 viral spike, molecular motion, protein architecture, receptor-triggered entry, type 1 fusion protein, cell membrane; HET: YCM NAG; 2.61A {Human immunodeficiency virus 1} PDB: 3jwo_A* 1meq_A (A:1-152,A:343-379)
Probab=20.44 E-value=50 Score=13.11 Aligned_cols=13 Identities=38% Similarity=0.455 Sum_probs=9.8
Q ss_pred EEEEEEEECCCCC
Q ss_conf 9999998528678
Q gi|254780935|r 174 KVHVEYLGMALLN 186 (276)
Q Consensus 174 ~V~ve~lg~a~~~ 186 (276)
=|+||.||.||-.
T Consensus 166 vv~iep~gvapt~ 178 (189)
T 3jwd_A 166 VVKIEPLGVAPTK 178 (189)
T ss_dssp EEEEEEEEECCCC
T ss_pred EEEEEECCCCCCC
T ss_conf 7998658518999
Done!