Query gi|254780935|ref|YP_003065348.1| rare lipoprotein A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 276
No_of_seqs 213 out of 949
Neff 3.6
Searched_HMMs 13730
Date Wed Jun 1 11:00:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780935.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n10a2 b.52.1.3 (A:1003-1145) 97.7 0.00017 1.2E-08 44.3 9.2 93 88-181 18-137 (143)
2 d1wc2a1 b.52.1.1 (A:1-180) End 97.2 0.00091 6.6E-08 39.7 8.3 92 88-183 15-158 (180)
3 d1bw3a_ b.52.1.2 (A:) Barwin { 95.2 0.011 8.2E-07 33.1 4.4 56 123-181 62-122 (125)
4 d1w6ga3 d.17.2.1 (A:97-211) Co 38.9 9.5 0.00069 15.1 3.2 46 101-148 53-98 (115)
5 d1grja2 d.26.1.2 (A:80-158) Gr 34.7 11 0.00081 14.7 5.6 52 122-173 7-60 (79)
6 d2awna1 b.40.6.3 (A:236-370) M 25.7 14 0.0011 14.0 1.7 53 121-173 72-126 (135)
7 d2f23a2 d.26.1.2 (A:78-156) Gr 21.9 19 0.0014 13.3 6.9 55 121-175 5-63 (79)
8 d2gkea2 d.21.1.1 (A:131-274) D 20.3 20 0.0015 13.1 2.7 32 117-148 50-81 (144)
9 d1nz9a_ b.34.5.4 (A:) N-utiliz 19.3 21 0.0016 13.0 2.5 35 141-185 11-47 (58)
10 d1w2za3 d.17.2.1 (A:99-206) Co 16.9 24 0.0018 12.6 3.1 46 101-149 52-97 (108)
No 1
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}
Probab=97.69 E-value=0.00017 Score=44.28 Aligned_cols=93 Identities=19% Similarity=0.196 Sum_probs=65.1
Q ss_pred EEEEEEEECCCCCCCCC-----CCCCE-EC---CCCCEEECC------CCCCCCEEEEEECCC----CCEEEEEECCCCC
Q ss_conf 67998885684168706-----58872-24---610102036------689984899998899----8579999668888
Q gi|254780935|r 88 AVGMASWYGKAFHGRLT-----ANGEV-YG---TEYITAAHP------TLPLPSYVRVTNMEN----GISLVVRVNDRGP 148 (276)
Q Consensus 88 ~~G~ASwYg~~f~G~~T-----AnGE~-~~---~~~lTAAH~------tLPl~s~VrVTNl~n----GrsvvVrVNDRGP 148 (276)
..|.|+|||.. +|.-| |.|-- .+ ...++||-. ..-.|-..+|+...+ +++|+|+|.|+.|
T Consensus 18 ~~g~AT~Yg~~-~~~~~~~~gGACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~~~~c~~~sv~V~vtd~c~ 96 (143)
T d1n10a2 18 LDAKSTWYGKP-TGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNE 96 (143)
T ss_dssp EEEEEEEEC-----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSSTTBCSCCEEEEEEEECS
T ss_pred EEEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCC
T ss_conf 71478696998-88877788604788876657776567770775716887677664857689976149987999975556
Q ss_pred CCC-CEEEECCHHHHHHHCCC-------CCCEEEEEEEEEE
Q ss_conf 869-61877588999870973-------2581899999985
Q gi|254780935|r 149 YHS-NRLIDLSNAAAKILRVE-------ERGVSKVHVEYLG 181 (276)
Q Consensus 149 f~~-gRiIDLS~~AA~~Lg~~-------~~Gva~V~ve~lg 181 (276)
--. ..-+|||..|+.+|.-. +.|+.+|+.+.+.
T Consensus 97 ~~~~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~ 137 (143)
T d1n10a2 97 EPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVK 137 (143)
T ss_dssp SCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECC
T ss_pred CCCCCCCCCCCHHHHHHHCCCCCHHHHEECCCCCEEEEEEE
T ss_conf 99997266289999962134420012300670213899975
No 2
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]}
Probab=97.23 E-value=0.00091 Score=39.74 Aligned_cols=92 Identities=16% Similarity=0.218 Sum_probs=64.6
Q ss_pred EEEEEEEECCCCCCCCCCCC--CE-----EC--CCCCEEECCC------------CCCCCEEEEEEC-----------CC
Q ss_conf 67998885684168706588--72-----24--6101020366------------899848999988-----------99
Q gi|254780935|r 88 AVGMASWYGKAFHGRLTANG--EV-----YG--TEYITAAHPT------------LPLPSYVRVTNM-----------EN 135 (276)
Q Consensus 88 ~~G~ASwYg~~f~G~~TAnG--E~-----~~--~~~lTAAH~t------------LPl~s~VrVTNl-----------~n 135 (276)
....|+|||+...| |.| .. |. ...+|||-.+ .-.|.-.+|+-. ..
T Consensus 15 ~~A~aT~Ygd~~~G---ACGyG~~~~~~~~~~g~G~~tAAlS~~lf~~~~~~~~G~~CG~CyeV~C~~~~~~~~~~~~~~ 91 (180)
T d1wc2a1 15 SCASTTNYHDSHKG---ACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTTGGYVPGQGGPVRE 91 (180)
T ss_dssp EEEEEEEECCCBCT---TTTCSCSSSSBCCSSGGGSCEEEEEHHHHCTTCCSSSCTTTTCEEEEEEEEEECTTSCCCCCT
T ss_pred CCCCEEEECCCCCC---CCCCCCCCCCCCCCCCCCCEEEECCHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 45525785798987---787873778775344775367652687716776543662347779999789997766877789
Q ss_pred CCEEEEEECCCCCCC--CC------------------EEEECCHHHHHHHCCCCCCEEEEEEEEEECC
Q ss_conf 857999966888886--96------------------1877588999870973258189999998528
Q gi|254780935|r 136 GISLVVRVNDRGPYH--SN------------------RLIDLSNAAAKILRVEERGVSKVHVEYLGMA 183 (276)
Q Consensus 136 GrsvvVrVNDRGPf~--~g------------------RiIDLS~~AA~~Lg~~~~Gva~V~ve~lg~a 183 (276)
|+||+|+|+|-.|-. .+ ..+|||. ++.++.-.+.|+..|..+.+.=.
T Consensus 92 g~sV~V~iTd~CP~n~~n~gWCn~p~~~~~~n~~g~~~HFDLs~-af~~ia~~~~G~v~V~yrrV~C~ 158 (180)
T d1wc2a1 92 GLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLEN-GRSQVTGMGWNNPETTWEVVNCD 158 (180)
T ss_dssp TCEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEEC-TTSTTGGGTCSSEEEEEEEECHH
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHH-HHHHHHHHCCCCCEEEEEEEECC
T ss_conf 98289999736998788887668865455555667631251348-99987652179642589996179
No 3
>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=95.19 E-value=0.011 Score=33.05 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=44.1
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECC-HHHHHHHCCCCC----CEEEEEEEEEE
Q ss_conf 998489999889985799996688888696187758-899987097325----81899999985
Q gi|254780935|r 123 PLPSYVRVTNMENGISLVVRVNDRGPYHSNRLIDLS-NAAAKILRVEER----GVSKVHVEYLG 181 (276)
Q Consensus 123 Pl~s~VrVTNl~nGrsvvVrVNDRGPf~~gRiIDLS-~~AA~~Lg~~~~----Gva~V~ve~lg 181 (276)
-.|.-+||||..||.++++||.|-.-+- =|||- ...+.+|+-..+ |.-.|-++++.
T Consensus 62 sCGkclrvTN~atga~~~~RiVDqCsng---GlDLD~~~vFn~iDtdG~G~~~Ghl~V~y~fV~ 122 (125)
T d1bw3a_ 62 ACGKCLRVTNPATGAQITARIVDQCANG---GLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVD 122 (125)
T ss_dssp GTTCEEEEEETTTTEEEEEEEEECCSSS---SCCSCSSSSHHHHCSSCHHHHHSEEEEEEEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEEEECCCCC---CCCCCCHHHHHEECCCCCCCCCCCEEEEEEEEC
T ss_conf 5223278653266868999996503689---885661755421457884100660798889961
No 4
>d1w6ga3 d.17.2.1 (A:97-211) Copper amine oxidase, domains 1 and 2 {Arthrobacter globiformis [TaxId: 1665]}
Probab=38.86 E-value=9.5 Score=15.10 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=30.6
Q ss_pred CCCCCCCCEECCCCCEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC
Q ss_conf 870658872246101020366899848999988998579999668888
Q gi|254780935|r 101 GRLTANGEVYGTEYITAAHPTLPLPSYVRVTNMENGISLVVRVNDRGP 148 (276)
Q Consensus 101 G~~TAnGE~~~~~~lTAAH~tLPl~s~VrVTNl~nGrsvvVrVNDRGP 148 (276)
|++..-+-.|....-+.-|-..|+.-++-|-+|++++ +|+|.|+|.
T Consensus 53 ~rRl~~~~~f~r~~p~~N~YA~PIeGl~~vvDl~~~~--Vi~i~D~~~ 98 (115)
T d1w6ga3 53 GRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVSKE--VTRVIDTGV 98 (115)
T ss_dssp TSCEEEEEEEECSSTTCCGGGSBCTTEEEEEETTTTE--EEEEEECCC
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCE--EEEEECCCC
T ss_conf 8759999975415999874645458628999898898--999977887
No 5
>d1grja2 d.26.1.2 (A:80-158) GreA transcript cleavage factor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=34.66 E-value=11 Score=14.69 Aligned_cols=52 Identities=19% Similarity=0.202 Sum_probs=38.8
Q ss_pred CCCCCEEEEEECCCCCEEEEEECC--CCCCCCCEEEECCHHHHHHHCCCCCCEE
Q ss_conf 899848999988998579999668--8888696187758899987097325818
Q gi|254780935|r 122 LPLPSYVRVTNMENGISLVVRVND--RGPYHSNRLIDLSNAAAKILRVEERGVS 173 (276)
Q Consensus 122 LPl~s~VrVTNl~nGrsvvVrVND--RGPf~~gRiIDLS~~AA~~Lg~~~~Gva 173 (276)
--|||.|.+.|+++++....++-- -.-...++|=-+|+=+...||-..--..
T Consensus 7 V~~Gs~V~l~d~~~~~~~~~~iVg~~ead~~~~~IS~~SPlG~ALlG~~~Gd~v 60 (79)
T d1grja2 7 VIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEEDDVV 60 (79)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEECTTTCBGGGTEEESSSHHHHHHTTCBTTCEE
T ss_pred EEECCEEEEEECCCCCEEEEEEECHHHCCCCCCEEEECCHHHHHHHCCCCCCEE
T ss_conf 995969999998899999999999889004499687279899997399999999
No 6
>d2awna1 b.40.6.3 (A:236-370) Maltose transport protein MalK, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.74 E-value=14 Score=13.99 Aligned_cols=53 Identities=15% Similarity=0.124 Sum_probs=38.1
Q ss_pred CCCCCCEEEEE-EC-CCCCEEEEEECCCCCCCCCEEEECCHHHHHHHCCCCCCEE
Q ss_conf 68998489999-88-9985799996688888696187758899987097325818
Q gi|254780935|r 121 TLPLPSYVRVT-NM-ENGISLVVRVNDRGPYHSNRLIDLSNAAAKILRVEERGVS 173 (276)
Q Consensus 121 tLPl~s~VrVT-Nl-~nGrsvvVrVNDRGPf~~gRiIDLS~~AA~~Lg~~~~Gva 173 (276)
.-+||+...++ .+ +.+..+++++.++-++..|-.|.|+-...+..=|...|.+
T Consensus 72 ve~lG~~~~~~~~~~~~~~~i~~~~~~~~~~~~G~~v~l~~~~~~~~lFd~~G~~ 126 (135)
T d2awna1 72 VEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTA 126 (135)
T ss_dssp EEECSSEEEEEEECTTSSSCEEEEEESCCCCCTTCEEEEECCGGGCEEECTTSBB
T ss_pred EEEEECCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECHHHEEEECCCCCE
T ss_conf 9962662999999066652699996997789987999999996259998999989
No 7
>d2f23a2 d.26.1.2 (A:78-156) GreA transcript cleavage factor, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=21.85 E-value=19 Score=13.29 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=39.9
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECC--CCCCCCC--EEEECCHHHHHHHCCCCCCEEEE
Q ss_conf 6899848999988998579999668--8888696--18775889998709732581899
Q gi|254780935|r 121 TLPLPSYVRVTNMENGISLVVRVND--RGPYHSN--RLIDLSNAAAKILRVEERGVSKV 175 (276)
Q Consensus 121 tLPl~s~VrVTNl~nGrsvvVrVND--RGPf~~g--RiIDLS~~AA~~Lg~~~~Gva~V 175 (276)
+.-||+.|++.+++++.....++-- -.-+..+ +|=-+|+-+...||...--...|
T Consensus 5 ~V~~Gs~V~l~~~~~~~~~~~~lVg~~e~d~~~~~~~IS~~SPlG~ALlGk~~Gd~v~v 63 (79)
T d2f23a2 5 VIGLGSVVELEDPLSGERLSVQVVSPAEANVLDTPMKISDASPMGKALLGHRVGDVLSL 63 (79)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEECGGGCBTTSSSEEEETTSHHHHHHTTCCTTCEEEE
T ss_pred EEEECCEEEEEECCCCCEEEEEEECHHHCCCCCCCCEECCCCHHHHHHHCCCCCCEEEE
T ss_conf 99859899999999998999999791570723496174366988999748999999999
No 8
>d2gkea2 d.21.1.1 (A:131-274) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]}
Probab=20.30 E-value=20 Score=13.09 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=27.0
Q ss_pred EECCCCCCCCEEEEEECCCCCEEEEEECCCCC
Q ss_conf 20366899848999988998579999668888
Q gi|254780935|r 117 AAHPTLPLPSYVRVTNMENGISLVVRVNDRGP 148 (276)
Q Consensus 117 AAH~tLPl~s~VrVTNl~nGrsvvVrVNDRGP 148 (276)
-.|+.+|-++-|..-...+..++.+|+..||-
T Consensus 50 ~~~~~fp~g~Nv~f~~~~~~~~i~iRt~ERGv 81 (144)
T d2gkea2 50 ESHERFPERVNAGFMQIINKEHIKLRVYERGA 81 (144)
T ss_dssp HTCTTCTTCCEEEEEEEEETTEEEEEEEETTT
T ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCC
T ss_conf 04632133355127999428808999936887
No 9
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=19.31 E-value=21 Score=12.96 Aligned_cols=35 Identities=34% Similarity=0.531 Sum_probs=21.9
Q ss_pred EEECCCCCCCC--CEEEECCHHHHHHHCCCCCCEEEEEEEEEECCCC
Q ss_conf 99668888869--6187758899987097325818999999852867
Q gi|254780935|r 141 VRVNDRGPYHS--NRLIDLSNAAAKILRVEERGVSKVHVEYLGMALL 185 (276)
Q Consensus 141 VrVNDRGPf~~--gRiIDLS~~AA~~Lg~~~~Gva~V~ve~lg~a~~ 185 (276)
|||. .|||.. |.|.++ ...++.++|.|+.+|+.-.
T Consensus 11 V~I~-~GpF~g~~g~V~~i---------~~~k~rv~V~v~ifGr~t~ 47 (58)
T d1nz9a_ 11 VRVV-SGPFADFTGTVTEI---------NPERGKVKVMVTIFGRETP 47 (58)
T ss_dssp EEEC-SGGGTTCEEEEEEE---------ETTTTEEEEEEESSSSEEE
T ss_pred EEEE-CCCCCCCEEEEEEE---------CCCCCEEEEEEEECCCCCE
T ss_conf 9990-05899988999999---------2889999999995399845
No 10
>d1w2za3 d.17.2.1 (A:99-206) Copper amine oxidase, domains 1 and 2 {Pea seedling (Pisum sativum) [TaxId: 3888]}
Probab=16.93 E-value=24 Score=12.62 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=28.6
Q ss_pred CCCCCCCCEECCCCCEEECCCCCCCCEEEEEECCCCCEEEEEECCCCCC
Q ss_conf 8706588722461010203668998489999889985799996688888
Q gi|254780935|r 101 GRLTANGEVYGTEYITAAHPTLPLPSYVRVTNMENGISLVVRVNDRGPY 149 (276)
Q Consensus 101 G~~TAnGE~~~~~~lTAAH~tLPl~s~VrVTNl~nGrsvvVrVNDRGPf 149 (276)
|++-.-+-.|-... +.-|--.|+.-++-|-+|++.+ |++|.|+|..
T Consensus 52 ~~Rl~~~~~f~r~~-~~N~YA~PIeGl~~vVDl~~~~--Vi~i~D~~~v 97 (108)
T d1w2za3 52 NVRTVRLDCFMKES-TVNIYVRPITGITIVADLDLMK--IVEYHDRDIE 97 (108)
T ss_dssp CCCEEEEEEEECTT-CSCGGGSBCCSEEEEEETTTTE--EEEEEECCCC
T ss_pred CCEEEEEEEEEECC-CCCCCCCCCCCCEEEEECCCCE--EEEEECCCCC
T ss_conf 96589999877569-9872523148508999888888--9999778875
Done!