RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780935|ref|YP_003065348.1| rare lipoprotein A [Candidatus Liberibacter asiaticus str. psy62] (276 letters) >1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} (A:) Length = 125 Score = 96.9 bits (241), Expect = 3e-21 Identities = 16/115 (13%), Positives = 28/115 (24%), Gaps = 8/115 (6%) Query: 69 KPYQIMGRWYVPRQYTAYAAVGMASWYGKAFHGRLTANGEVYGTEY----ITAAHPTLPL 124 + +Y P Q S Y + + Sbjct: 4 NDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAAC 63 Query: 125 PSYVRVTNMENGISLVVRVNDRGPYHSNRLIDLSNAAA-KILRVEERGVSKVHVE 178 +RVTN G + R+ D+ +DL + G + H+ Sbjct: 64 GKCLRVTNPATGAQITARIVDQCANGG---LDLDWDTVFTKIDTNGIGYQQGHLN 115 >3d30_A YOAJ, expansin like protein; peptidoglycan associated protein, unknown function, MLTA, bacteria autolysis, peptidoglycan-binding protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A (A:1-109) Length = 109 Score = 90.9 bits (225), Expect = 2e-19 Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 7/103 (6%) Query: 85 AYAAVGMASWYGKAFHGRLTANGEVYGTEYITAAHPTLPLPSYV-------RVTNMENGI 137 G A++ G + G + ITA +P V + Sbjct: 4 DDLHEGYATYTGSGYSGGAFLLDPIPSDMEITAINPADLNYGGVKAALAGSYLEVEGPKG 63 Query: 138 SLVVRVNDRGPYHSNRLIDLSNAAAKILRVEERGVSKVHVEYL 180 V V D P + +DLS A + + + G + + Sbjct: 64 KTTVYVTDLYPEGARGALDLSPNAFRKIGNMKDGKINIKWRVV 106 >1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A (A:602-717) Length = 116 Score = 27.1 bits (60), Expect = 2.7 Identities = 6/28 (21%), Positives = 11/28 (39%) Query: 150 HSNRLIDLSNAAAKILRVEERGVSKVHV 177 HS +L + AA + + V + Sbjct: 35 HSGKLGATAEKAAAVGTANKSTVEGIQA 62 >1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (C:1-82,C:185-330) Length = 228 Score = 26.0 bits (57), Expect = 5.3 Identities = 9/20 (45%), Positives = 10/20 (50%) Query: 149 YHSNRLIDLSNAAAKILRVE 168 YHSNRL L I+ E Sbjct: 5 YHSNRLDVLEALMEFIVERE 24 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 25.5 bits (56), Expect = 7.6 Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 3/32 (9%) Query: 160 AAAKILRVEERGVSKVHVEYLGMALLNGMDQE 191 + A ++ +E + +V V Y GM + + ++ Sbjct: 1 SLADVMSIES--LVEV-VFYRGMTMQVAVPRD 29 >1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} (A:) Length = 179 Score = 25.5 bits (55), Expect = 8.4 Identities = 14/129 (10%), Positives = 36/129 (27%), Gaps = 17/129 (13%) Query: 77 WYVPRQYTAYAAVGMASWYGKAFHGRLTANGEVYGTEYITAAHPTLPLPSYVRVTNMENG 136 ++ + A + + + H + + GTE + + M Sbjct: 57 TFLELKQRVKVAENLKANVFVSIHANSSGSSASNGTETYYQRSASKAFANV-----MHKY 111 Query: 137 ISLVVRVNDRGPYHSNRLIDLSNAAAKILRVE----------ERGVSKVHVEYLGMALLN 186 + + DRG + N + + +E + + + + Sbjct: 112 FAPATGLTDRGIRYGN-FHVIRETTMPAVLLEVGYLSNAKEEATLFDEDFQNRVAQGIAD 170 Query: 187 GMDQEYLRS 195 G+ + YL Sbjct: 171 GITE-YLDV 178 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.321 0.137 0.415 Gapped Lambda K H 0.267 0.0459 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,209,794 Number of extensions: 100237 Number of successful extensions: 200 Number of sequences better than 10.0: 1 Number of HSP's gapped: 198 Number of HSP's successfully gapped: 8 Length of query: 276 Length of database: 4,956,049 Length adjustment: 87 Effective length of query: 189 Effective length of database: 2,015,014 Effective search space: 380837646 Effective search space used: 380837646 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.2 bits)