RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780935|ref|YP_003065348.1| rare lipoprotein A [Candidatus
Liberibacter asiaticus str. psy62]
         (276 letters)



>d1w36c1 c.37.1.19 (C:1-347) Exodeoxyribonuclease V gamma chain
           (RecC), N-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 347

 Score = 26.1 bits (57), Expect = 3.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 149 YHSNRLIDLSNAAAKILRVE 168
           YHSNRL  L      I+  E
Sbjct: 5   YHSNRLDVLEALMEFIVERE 24


>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis
          orientalis [TaxId: 31958]}
          Length = 339

 Score = 26.0 bits (56), Expect = 3.3
 Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)

Query: 62 GGRYFL--GKPYQIMGRWYVPRQYTAY 86
          GGR +   GKP  I G  Y P  +  +
Sbjct: 10 GGRQYSVNGKPLLIRGGGYTPDLFLRW 36


>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus
           cuniculus) [TaxId: 9986]}
          Length = 551

 Score = 25.3 bits (55), Expect = 5.0
 Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 2/22 (9%)

Query: 232 NCDD--DSLQKQREISLRERKK 251
              D     QK RE  L ER+K
Sbjct: 5   TVGDPQGLFQKHREQELEERRK 26


>d2ae0x1 b.52.1.4 (X:3-337) Membrane-bound lytic murein
           transglycosylase A, MLTA {Escherichia coli [TaxId: 562]}
          Length = 335

 Score = 24.8 bits (54), Expect = 8.9
 Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 11/78 (14%)

Query: 51  RIVSGKRVPRGGGRYFLGKPYQIMGRWYVPRQYTAYAAVGMASWYGKAFHGRLTANGEVY 110
               G  +         G  Y+ +G+  + R       + M +   + +      + E  
Sbjct: 166 DFGDGSPLNFFSYAGKNGHAYRSIGKVLIDRGEVKKEDMSMQAI--RHW---GETHSEAE 220

Query: 111 GTEYITAAHPTLPLPSYV 128
             E +         PS+V
Sbjct: 221 VRELLEQN------PSFV 232


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0451    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,071,814
Number of extensions: 50093
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 4
Length of query: 276
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,254,276
Effective search space: 240820992
Effective search space used: 240820992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.5 bits)