HHsearch alignment for GI: 254780936 and conserved domain: PRK09482
>PRK09482 xni exonuclease IX; Provisional.
Probab=91.24 E-value=1.3 Score=24.29 Aligned_cols=118 Identities=16% Similarity=0.083 Sum_probs=57.2
Q ss_pred EEEEEEEHHHHHHHHHHC----CCCC----C-HHHHHHHHHHCCEEEEEEEEEC-CC----------------CCCHHHH
Q ss_conf 189998078999999850----8767----9-8999999851792999999730-68----------------8731467
Q gi|254780936|r 7 KIALFIDGANLYASSKAL----GFDI----D-YRKLLKAFRSRAIVIRAYYYTT-VV----------------GDPEQQF 60 (182)
Q Consensus 7 rvaIfID~~Nl~~~~~~~----~~~~----d-~~~L~~~l~~~~~l~~~~~y~~-~~----------------~~~~~~~ 60 (182)
T Consensus 3 ~~llLIDG~~l~~Ray~a~p~~~~~~~~~~~~~~~l~kli~~~~P~~i~v~fD~~~~~~~fR~e~~~~YKanR~~~pd~L 82 (256)
T PRK09482 3 NHLLIIDALNLIRRIHAVQPSPNDIAACVETCQHALDKLIRHSQPTHAVAVFDGDERSSGWRHQLLPDYKAGRKPMPEAL 82 (256)
T ss_pred CCEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCHHH
T ss_conf 72899846289999984377899988678999999999999719987999984799876537776488760999999899
Q ss_pred -HHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEE
Q ss_conf -7757999889755956975345895378886543565329999999994211588999838665899999999849889
Q gi|254780936|r 61 -SPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKV 139 (182)
Q Consensus 61 -~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V 139 (182)
T Consensus 83 ~~Q~~~i~~~l~~~gi~~~~~~g-------------~EADDiIatla~~~~~~~~~v~IvS~DkDl~QLv~------~~v 143 (256)
T PRK09482 83 AQGLPAIRAAFEELGIDSWLADG-------------NEADDLIATLAVKVAQAGHQATIVSTDKGYCQLLS------PTI 143 (256)
T ss_pred HHHHHHHHHHHHHCCCCEEEECC-------------CCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHCC------CCE
T ss_conf 99999999999977998983578-------------14889999999999977996999966888999675------984
Q ss_pred EEEE
Q ss_conf 9998
Q gi|254780936|r 140 TIVS 143 (182)
Q Consensus 140 ~v~~ 143 (182)
T Consensus 144 ~v~~ 147 (256)
T PRK09482 144 QIRD 147 (256)
T ss_pred EEEE
T ss_conf 9997