HHsearch alignment for GI: 254780936 and conserved domain: TIGR00288
>TIGR00288 TIGR00288 conserved hypothetical protein TIGR00288; InterPro: IPR002790 This entry describes archaebacterial proteins of unknown function. .
Probab=98.94 E-value=5.7e-09 Score=76.54 Aligned_cols=133 Identities=21% Similarity=0.312 Sum_probs=107.8
Q ss_pred CCCEEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 88718999807899999985087679899999985179299999973068873146777579998897559569753458
Q gi|254780936|r 4 PREKIALFIDGANLYASSKALGFDIDYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAK 83 (182)
Q Consensus 4 ~~~rvaIfID~~Nl~~~~~~~~~~~d~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~ 83 (182)
T Consensus 22 ~~~~~g~l~dgp~~l~~----~~~~~l~~~~~~~~~~g~~~~g~~~l~~~--------~~~~l~~~~~~~g~~p~~---- 85 (161)
T TIGR00288 22 GEKKLGLLVDGPNMLRK----EFNLDLDLVRELLSEYGDLKVGKVLLNQY--------ASDKLIEAVVNQGFEPIV---- 85 (161)
T ss_pred CCCCEEEEECCCHHHHH----HHCCCHHHHHHHHHHHCCHHHHHHHHHHH--------HHHHHHHHHHHCCCCCEE----
T ss_conf 32111356526023445----53025789998875304501234444222--------014677787606876224----
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCC
Q ss_conf 953788865435653299999999942--115889998386658999999998498899998315776547089998521
Q gi|254780936|r 84 EFTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQAD 161 (182)
Q Consensus 84 ~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad 161 (182)
T Consensus 86 ----------~~gd~d~~~~~~~~~l~~~p~~d~~~~~~~~~d~~p~~~~~~~~g~~~~~~g~~pg~----~~~l~~~~d 151 (161)
T TIGR00288 86 ----------VAGDVDVELAVEALELIYNPNIDVVALVTRDADFLPLLNKAKENGKETIVIGAEPGF----STALQNSAD 151 (161)
T ss_pred ----------EECCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCC----HHHHHCCCC
T ss_conf ----------304431123444444430687433443303530478888775337605886257660----123211233
Q ss_pred CCEEH
Q ss_conf 11518
Q gi|254780936|r 162 YFMDL 166 (182)
Q Consensus 162 ~fi~l 166 (182)
T Consensus 152 ~~~~~ 156 (161)
T TIGR00288 152 DAIIL 156 (161)
T ss_pred EEEEE
T ss_conf 03651