HHsearch alignment of GI: 254780936 and MMDB domain: 2qip_A_
>2qip_A (A:) Protein of unknown function VPA0982; APC85975, structural genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus rimd 2210633}
Probab=100.00 E-value=4.5e-32 Score=220.66 Aligned_cols=155 Identities=28% Similarity=0.422 Sum_probs=138.4
Q ss_pred CCCCEEEEEEEHHHHHHHHHH-CCCCCCHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 788718999807899999985-0876798999999851792999999730688731467775799988975595697534
Q gi|254780936|r 3 DPREKIALFIDGANLYASSKA-LGFDIDYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKV 81 (182)
Q Consensus 3 ~~~~rvaIfID~~Nl~~~~~~-~~~~~d~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~ 81 (182)
++.+|+||||||+|++++.++ .++++|+.+|++.+.+.+++.++++|++.+.+.. ...|.++|++.||+++.+|
T Consensus 7 ~~~~rvaifiDg~Nl~~~~~~~~~~~~d~~~l~~~~~~~~~i~~~~~y~~~~~~~~-----~~~~~~~l~~~g~~v~~~~ 81 (165)
T 2qip_A 7 DHKEKIAILVDVQNVYYTCREAYRSNFDYNQFWYVATQEKEVVSAKAYAIASNDPK-----QRQFHHILRGVGFEVXLKP 81 (165)
T ss_dssp CCCEEEEEEEEHHHHHHHHHHHHSSCBCHHHHHHHHTTTEEEEEEEEEECCCCCHH-----HHHHHHHHHHHTCEEEECC
T ss_pred CCCCCEEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCHH-----HCCHHHHHHHCCCEEEEEE
T ss_conf 87782899981653699998743767799999999970792899999705778555-----4125689884574256641
Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCHHHHHHHC
Q ss_conf 58953788865435653299999999942115889998386658999999998-49889999831577654708999852
Q gi|254780936|r 82 AKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQR-KVKKVTIVSTVLSDPSMASDQLRRQA 160 (182)
Q Consensus 82 ~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~-~Gk~V~v~~~~~~~~~~~S~~L~~~a 160 (182)
...+..+ ..||++|+.|++||+++++++|++||||||+||+|++++||+ .|++|+++++ ++.+|++|+++|
T Consensus 82 ~~~~~~~----~~~k~~Dv~laid~~~~~~~~d~~vlvSgD~Df~p~i~~lr~~~g~~V~v~~~----~~~~s~~L~~~a 153 (165)
T 2qip_A 82 YIQRRDG----SAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGV----PRLTSQTLIDCA 153 (165)
T ss_dssp CCCCSSC----CCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEEC----GGGSCHHHHHHS
T ss_pred EEECCCC----CCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEC----CCCCCHHHHHHC
T ss_conf 1551678----78872379999999976523799999978825899999999838958999978----998829999869
Q ss_pred CCCEEHHHHH
Q ss_conf 1115189978
Q gi|254780936|r 161 DYFMDLAYLK 170 (182)
Q Consensus 161 d~fi~l~~l~ 170 (182)
|.|++|+++.
T Consensus 154 d~~~~l~~~~ 163 (165)
T 2qip_A 154 DNFVAIDDDF 163 (165)
T ss_dssp SEEEECSGGG
T ss_pred CEEEECCCHH
T ss_conf 9889857221