HHsearch alignment of GI: 254780936 and MMDB domain: 3g1w_A_1-108_243-305
>3g1w_A (A:1-108,A:243-305) Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125}
Probab=90.55 E-value=1.3 Score=23.89 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCHH-HHHHHHHHHHCCCE
Q ss_conf 7579998897559569753458953788865435653299999999942--11588999838665-89999999984988
Q gi|254780936|r 62 PLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSGDGC-FTTLVAALQRKVKK 138 (182)
Q Consensus 62 ~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSGD~D-f~pli~~lr~~Gk~ 138 (182)
-.+...++++..|+++.... ..+-|..--+.+++.+ +.+|-++|.+.|.+ ..|+++++++.|..
T Consensus 22 v~~Gie~aa~~~G~~~~~~~-------------~~~~d~~~q~~~ie~li~~~vdGIii~p~d~~~~~~~i~~a~~~gIP 88 (171)
T 3g1w_A 22 CLKGFEDAAQALNVTVEYRG-------------AAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKAVDAGIP 88 (171)
T ss_dssp HHHHHHHHHHHHTCEEEEEE-------------CSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCEEEEEE-------------CCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 99999999997299799997-------------99999999999999999779999999678737789999999986992
Q ss_pred EEEEEE
Q ss_conf 999983
Q gi|254780936|r 139 VTIVST 144 (182)
Q Consensus 139 V~v~~~ 144 (182)
|+.+..
T Consensus 89 VV~id~ 94 (171)
T 3g1w_A 89 IVLFDS 94 (171)
T ss_dssp EEEESS
T ss_pred EEEECC
T ss_conf 999816