HHsearch results for GI: 254780936 and protein with PDBid: 2qip_A

>2qip_A Protein of unknown function VPA0982; APC85975, structural genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus rimd 2210633}
Probab=100.00  E-value=8.4e-33  Score=224.25  Aligned_cols=153  Identities=29%  Similarity=0.456  Sum_probs=134.1

Q ss_pred             CCCCEEEEEEEHHHHHHHHHH-CCCCCCHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             788718999807899999985-0876798999999851792999999730688731467775799988975595697534
Q gi|254780936|r    3 DPREKIALFIDGANLYASSKA-LGFDIDYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKV   81 (182)
Q Consensus         3 ~~~~rvaIfID~~Nl~~~~~~-~~~~~d~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~   81 (182)
                      ++++||||||||+|+|++++. .++++||.+|++++.+.+++.++++|.+++.+...     ..+.+.+...|++++.++
T Consensus         7 ~~~~rvaIfID~~Nl~~~~k~~~~~~~d~~~l~~~~~~~~~v~~~~~y~~~~~~~~~-----~~~~~~~~~~~~~~~~~~   81 (165)
T 2qip_A            7 DHKEKIAILVDVQNVYYTCREAYRSNFDYNQFWYVATQEKEVVSAKAYAIASNDPKQ-----RQFHHILRGVGFEVMLKP   81 (165)
T ss_dssp             CCCEEEEEEEEHHHHHHHHHHHHSSCBCHHHHHHHHTTTEEEEEEEEEECCCCCHHH-----HHHHHHHHHHTCEEEECC
T ss_pred             CCCCEEEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCHHH-----HHHHHHHHHCCCEEEEEC
T ss_conf             887709999956768999987437776799999999638908999998236771655-----445789997693688634


Q ss_pred             EEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCHHHHHHHC
Q ss_conf             58953788865435653299999999942115889998386658999999998-49889999831577654708999852
Q gi|254780936|r   82 AKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQR-KVKKVTIVSTVLSDPSMASDQLRRQA  160 (182)
Q Consensus        82 ~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~-~Gk~V~v~~~~~~~~~~~S~~L~~~a  160 (182)
                      ...+.++    ..++++|+.|++|+|.+++++|++|||||||||+|++++||+ .|++|+++++    ++.+|.+|+++|
T Consensus        82 ~~~~~~~----~~~~~~Dv~l~id~~~~~~~~d~~vLvSgDsDf~p~v~~lr~~~gk~V~v~~~----~~~~s~~L~~~a  153 (165)
T 2qip_A           82 YIQRRDG----SAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGV----PRLTSQTLIDCA  153 (165)
T ss_dssp             CCCCSSC----CCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEEC----GGGSCHHHHHHS
T ss_pred             CEECCCC----CCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEC----CCCCCHHHHHHC
T ss_conf             4651678----78861179999999962776898999957762899999999858978999978----998839999869


Q ss_pred             CCCEEHHH
Q ss_conf             11151899
Q gi|254780936|r  161 DYFMDLAY  168 (182)
Q Consensus       161 d~fi~l~~  168 (182)
                      |+|++|++
T Consensus       154 d~fi~id~  161 (165)
T 2qip_A          154 DNFVAIDD  161 (165)
T ss_dssp             SEEEECSG
T ss_pred             CEEEECCC
T ss_conf             98899173