Query gi|254780936|ref|YP_003065349.1| hypothetical protein CLIBASIA_04175 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 182
No_of_seqs 108 out of 875
Neff 8.2
Searched_HMMs 23785
Date Wed Jun 1 00:01:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780936.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qip_A Protein of unknown func 100.0 8.4E-33 3.5E-37 224.2 17.6 153 3-168 7-161 (165)
2 1exn_A 5'-exonuclease, 5'-nucl 93.9 0.34 1.4E-05 26.5 11.3 41 97-143 127-167 (290)
3 2vk2_A YTFQ, ABC transporter p 88.5 1.3 5.4E-05 22.9 10.0 81 53-146 137-228 (306)
4 3h7i_A Ribonuclease H, RNAse H 88.3 1.3 5.6E-05 22.8 6.8 47 71-130 117-163 (305)
5 3fxa_A SIS domain protein; YP_ 87.8 1.4 6E-05 22.7 6.9 109 28-166 29-143 (201)
6 3l49_A ABC sugar (ribose) tran 86.8 1.6 6.8E-05 22.3 11.5 32 115-146 193-225 (291)
7 2qv7_A Diacylglycerol kinase D 86.1 1.8 7.4E-05 22.1 10.4 98 44-156 25-124 (337)
8 1req_B Methylmalonyl-COA mutas 83.6 2.2 9.2E-05 21.5 5.6 57 110-166 558-618 (637)
9 3cvj_A Putative phosphoheptose 83.5 0.51 2.1E-05 25.4 2.3 56 111-166 107-170 (243)
10 1bgx_T TAQ DNA polymerase; DNA 82.8 0.069 2.9E-06 30.9 -2.3 115 1-130 7-150 (832)
11 1vim_A Hypothetical protein AF 81.9 2.7 0.00011 20.9 5.6 104 27-166 31-140 (200)
12 1m3s_A Hypothetical protein YC 80.5 3 0.00012 20.7 5.9 101 30-166 27-130 (186)
13 3g1w_A Sugar ABC transporter; 74.0 4.5 0.00019 19.5 10.3 79 56-146 138-222 (305)
14 3d02_A Putative LACI-type tran 73.2 4.7 0.0002 19.4 12.0 41 105-146 182-224 (303)
15 3l6u_A ABC-type sugar transpor 73.1 4.7 0.0002 19.4 11.4 39 105-144 188-227 (293)
16 2xij_A Methylmalonyl-COA mutas 72.4 4.1 0.00017 19.7 4.2 80 65-164 623-712 (762)
17 1jeo_A MJ1247, hypothetical pr 72.2 4.1 0.00017 19.8 4.2 100 30-166 30-132 (180)
18 1req_A Methylmalonyl-COA mutas 71.2 4.9 0.00021 19.3 4.4 80 65-164 615-704 (727)
19 2x7x_A Sensor protein; transfe 71.0 5.3 0.00022 19.1 9.5 80 53-146 137-223 (325)
20 3m9w_A D-xylose-binding peripl 68.4 6 0.00025 18.7 8.9 30 115-144 190-221 (313)
21 2xbl_A Phosphoheptose isomeras 67.8 6.2 0.00026 18.6 5.8 52 109-166 113-167 (198)
22 2i2w_A Phosphoheptose isomeras 67.2 5.1 0.00021 19.2 3.8 64 97-166 116-182 (212)
23 3brs_A Periplasmic binding pro 64.4 7.2 0.0003 18.2 8.5 80 53-146 140-225 (289)
24 3gbv_A Putative LACI-family tr 64.0 7.3 0.00031 18.2 5.7 102 35-145 130-232 (304)
25 1tjy_A Sugar transport protein 62.2 7.9 0.00033 18.0 10.3 44 97-141 170-217 (316)
26 2poc_A D-fructose-6-, isomeras 60.8 8.4 0.00035 17.8 4.5 30 115-144 274-306 (367)
27 2wpf_A Trypanothione reductase 60.6 5.4 0.00023 19.0 2.9 33 112-144 190-225 (495)
28 1kjn_A MTH0777; hypotethical p 58.7 9.1 0.00038 17.6 5.2 80 64-145 26-112 (157)
29 3miz_A Putative transcriptiona 58.7 9.1 0.00038 17.6 8.1 88 55-145 142-233 (301)
30 1tk9_A Phosphoheptose isomeras 58.2 9.3 0.00039 17.6 5.5 52 109-166 107-161 (188)
31 2fdr_A Conserved hypothetical 57.5 9.5 0.0004 17.5 4.0 56 118-175 164-221 (229)
32 3g68_A Putative phosphosugar i 55.7 9.7 0.00041 17.4 3.5 37 124-166 97-133 (352)
33 3bl5_A Queuosine biosynthesis 54.4 11 0.00045 17.2 5.4 43 124-169 135-179 (219)
34 3etn_A Putative phosphosugar i 51.4 12 0.0005 16.9 4.7 110 29-166 43-159 (220)
35 2xgg_A Microneme protein 2; A/ 51.2 12 0.0005 16.9 3.4 45 115-162 125-174 (178)
36 2hqm_A GR, grase, glutathione 51.2 11 0.00046 17.1 3.2 42 104-145 176-217 (479)
37 3ixl_A Amdase, arylmalonate de 50.5 12 0.00052 16.8 4.3 73 64-140 132-209 (240)
38 1y0p_A Fumarate reductase flav 50.4 12 0.00052 16.8 4.4 48 94-142 106-155 (571)
39 3knz_A Putative sugar binding 50.1 13 0.00053 16.7 4.0 41 120-166 107-148 (366)
40 1u0t_A Inorganic polyphosphate 49.8 13 0.00053 16.7 7.9 87 57-144 16-107 (307)
41 2qu7_A Putative transcriptiona 49.4 13 0.00054 16.7 8.7 83 59-146 137-224 (288)
42 1vhv_A Diphthine synthase; str 47.8 14 0.00057 16.5 5.2 38 105-142 80-121 (268)
43 3e3m_A Transcriptional regulat 47.3 14 0.00058 16.5 7.5 103 33-146 178-287 (355)
44 2rjo_A Twin-arginine transloca 46.6 14 0.0006 16.4 9.7 78 54-145 146-231 (332)
45 3brq_A HTH-type transcriptiona 45.6 15 0.00062 16.3 10.6 77 59-146 154-237 (296)
46 2zj3_A Glucosamine--fructose-6 45.4 15 0.00062 16.3 4.5 31 114-144 282-315 (375)
47 1j5p_A Aspartate dehydrogenase 44.1 13 0.00054 16.7 2.7 34 111-144 59-92 (253)
48 2jk1_A HUPR, hydrogenase trans 43.7 14 0.00058 16.4 2.8 86 66-168 36-121 (139)
49 3fj1_A Putative phosphosugar i 43.6 16 0.00066 16.1 4.4 41 120-166 101-142 (344)
50 1lvl_A Dihydrolipoamide dehydr 43.4 16 0.00067 16.1 3.3 51 104-154 162-212 (458)
51 8abp_A L-arabinose-binding pro 42.2 17 0.0007 16.0 11.4 78 58-145 147-232 (306)
52 3huu_A Transcription regulator 42.1 17 0.0007 16.0 8.5 35 111-145 200-238 (305)
53 2eq6_A Pyruvate dehydrogenase 42.1 17 0.0007 16.0 3.1 40 105-144 160-200 (464)
54 2pg3_A Queuosine biosynthesis 42.0 17 0.0007 16.0 6.3 41 125-168 139-181 (232)
55 1j5x_A Glucosamine-6-phosphate 40.8 17 0.00073 15.8 5.5 46 115-166 103-151 (342)
56 2gqf_A Hypothetical protein HI 40.7 17 0.00074 15.8 3.3 31 111-142 3-33 (401)
57 2iks_A DNA-binding transcripti 40.7 18 0.00074 15.8 8.6 81 53-146 147-234 (293)
58 1zk7_A HGII, reductase, mercur 40.1 18 0.00075 15.8 3.7 40 105-144 168-207 (467)
59 2yvq_A Carbamoyl-phosphate syn 39.1 19 0.00078 15.7 4.0 18 63-80 39-56 (143)
60 1mf7_A Integrin alpha M; cell 38.7 19 0.00079 15.6 3.5 66 96-161 80-162 (194)
61 1x92_A APC5045, phosphoheptose 38.2 19 0.00081 15.6 5.0 35 109-143 110-147 (199)
62 3lad_A Dihydrolipoamide dehydr 38.0 19 0.00081 15.6 3.5 33 113-145 180-212 (476)
63 1fec_A Trypanothione reductase 37.8 19 0.00081 15.5 3.1 32 113-144 187-221 (490)
64 1jr2_A Uroporphyrinogen-III sy 36.7 20 0.00085 15.4 7.1 131 10-160 117-257 (286)
65 3g85_A Transcriptional regulat 36.3 21 0.00086 15.4 10.1 93 33-138 118-213 (289)
66 3k32_A Uncharacterized protein 36.2 21 0.00086 15.4 5.5 49 109-164 98-154 (203)
67 1f06_A MESO-diaminopimelate D- 36.1 13 0.00056 16.6 1.7 33 110-142 56-88 (320)
68 2an1_A Putative kinase; struct 35.1 21 0.0009 15.3 6.8 79 61-150 21-99 (292)
69 2h3h_A Sugar ABC transporter, 34.8 22 0.00091 15.2 9.4 77 55-145 134-216 (313)
70 2qsw_A Methionine import ATP-b 34.5 22 0.00092 15.2 3.4 29 115-143 69-98 (100)
71 3ic9_A Dihydrolipoamide dehydr 34.1 22 0.00094 15.2 2.9 36 110-145 171-206 (492)
72 2z04_A Phosphoribosylaminoimid 34.0 22 0.00094 15.2 4.9 28 115-142 294-321 (365)
73 3d8t_A Uroporphyrinogen-III sy 33.6 23 0.00095 15.1 3.6 14 67-80 172-185 (286)
74 2pln_A HP1043, response regula 33.2 23 0.00097 15.1 7.6 80 64-164 32-113 (137)
75 3ksm_A ABC-type sugar transpor 32.3 24 0.001 15.0 10.5 85 48-146 131-222 (276)
76 2dc1_A L-aspartate dehydrogena 31.6 24 0.001 14.9 3.4 52 110-161 48-99 (236)
77 1iuk_A Hypothetical protein TT 31.4 24 0.00099 15.0 2.4 85 64-161 30-114 (140)
78 1wde_A Probable diphthine synt 31.2 25 0.001 14.9 3.6 37 106-142 77-117 (294)
79 3jx9_A Putative phosphoheptose 31.1 5.6 0.00024 18.9 -0.9 57 111-173 76-135 (170)
80 3bio_A Oxidoreductase, GFO/IDH 30.8 25 0.0011 14.8 2.7 32 111-142 64-95 (304)
81 2b2x_A Integrin alpha-1; compu 30.7 25 0.0011 14.8 5.2 66 96-161 98-184 (223)
82 1vhq_A Enhancing lycopene bios 30.5 25 0.0011 14.8 4.7 34 111-144 89-141 (232)
83 1p3y_1 MRSD protein; flavoprot 30.4 26 0.0011 14.8 3.1 11 5-15 8-18 (194)
84 1v59_A Dihydrolipoamide dehydr 30.3 26 0.0011 14.8 3.0 42 105-146 175-216 (478)
85 2r9z_A Glutathione amide reduc 30.0 26 0.0011 14.7 3.2 41 105-145 158-198 (463)
86 3fkj_A Putative phosphosugar i 30.0 26 0.0011 14.7 5.0 17 127-143 279-295 (347)
87 2yva_A DNAA initiator-associat 29.5 26 0.0011 14.7 5.0 41 103-143 100-143 (196)
88 1f2t_B RAD50 ABC-ATPase; DNA d 29.3 22 0.00091 15.2 1.9 34 125-166 102-135 (148)
89 2a3n_A Putative glucosamine-fr 28.4 28 0.0012 14.6 5.8 47 114-166 104-153 (355)
90 3ff4_A Uncharacterized protein 28.4 28 0.0012 14.6 3.5 82 64-161 21-102 (122)
91 3dhx_A Methionine import ATP-b 28.2 28 0.0012 14.6 4.8 31 115-145 67-98 (106)
92 2q1w_A Putative nucleotide sug 28.0 28 0.0012 14.5 3.9 20 114-133 241-264 (333)
93 2bde_A Cytosolic IMP-GMP speci 28.0 28 0.0012 14.5 4.6 44 98-143 158-209 (470)
94 1zrn_A L-2-haloacid dehalogena 27.9 18 0.00078 15.7 1.3 77 99-182 153-231 (232)
95 2hsg_A Glucose-resistance amyl 27.8 28 0.0012 14.5 8.3 103 32-147 167-277 (332)
96 3ced_A Methionine import ATP-b 27.8 28 0.0012 14.5 4.5 29 115-143 66-96 (98)
97 1vsr_A Protein (VSR endonuclea 27.3 15 0.00063 16.2 0.8 56 4-79 35-93 (136)
98 3egc_A Putative ribose operon 27.2 29 0.0012 14.4 6.6 80 59-146 140-223 (291)
99 1xdp_A Polyphosphate kinase; P 27.2 29 0.0012 14.4 3.5 63 102-164 351-425 (687)
100 3eua_A Putative fructose-amino 26.8 29 0.0012 14.4 5.4 20 124-143 89-108 (329)
101 1gud_A ALBP, D-allose-binding 26.8 30 0.0012 14.4 10.3 48 98-146 175-228 (288)
102 1ges_A Glutathione reductase; 26.7 30 0.0012 14.4 2.9 43 105-147 159-201 (450)
103 3jvd_A Transcriptional regulat 26.5 30 0.0013 14.4 9.0 98 33-146 165-268 (333)
104 3ctp_A Periplasmic binding pro 25.6 31 0.0013 14.3 6.3 102 33-146 163-268 (330)
105 3o9z_A Lipopolysaccaride biosy 25.3 31 0.0013 14.2 5.2 32 110-141 70-101 (312)
106 2ioy_A Periplasmic sugar-bindi 25.1 32 0.0013 14.2 10.6 80 52-145 131-216 (283)
107 1pt6_A Integrin alpha-1; X-RAY 24.8 32 0.0013 14.2 4.6 48 114-161 111-169 (213)
108 3dgz_A Thioredoxin reductase 2 24.6 32 0.0014 14.2 3.0 39 105-143 177-215 (488)
109 2o8r_A Polyphosphate kinase; s 24.4 33 0.0014 14.1 3.7 63 102-164 356-430 (705)
110 2fvy_A D-galactose-binding per 24.4 33 0.0014 14.1 11.2 77 57-145 153-236 (309)
111 3cea_A MYO-inositol 2-dehydrog 24.2 33 0.0014 14.1 5.4 31 111-141 70-100 (346)
112 3o0h_A Glutathione reductase; 23.9 33 0.0014 14.1 3.2 34 113-146 191-224 (484)
113 2fn9_A Ribose ABC transporter, 23.6 34 0.0014 14.0 9.5 78 56-146 143-225 (290)
114 1g63_A Epidermin modifying enz 23.5 34 0.0014 14.0 3.8 29 112-140 107-141 (181)
115 2i0z_A NAD(FAD)-utilizing dehy 23.3 34 0.0014 14.0 3.8 30 112-142 26-55 (447)
116 1dxl_A Dihydrolipoamide dehydr 22.6 36 0.0015 13.9 4.7 40 105-144 169-208 (470)
117 2qrr_A Methionine import ATP-b 22.4 36 0.0015 13.9 4.8 29 115-143 69-98 (101)
118 1nri_A Hypothetical protein HI 22.4 36 0.0015 13.9 5.5 50 111-166 139-191 (306)
119 2bcg_G Secretory pathway GDP d 22.3 36 0.0015 13.9 3.9 13 66-78 248-260 (453)
120 1n3y_A Integrin alpha-X; alpha 22.2 36 0.0015 13.9 6.0 67 95-161 83-166 (198)
121 2d13_A Hypothetical protein PH 22.1 36 0.0015 13.8 4.8 12 4-15 3-14 (227)
122 1byr_A Protein (endonuclease); 21.8 37 0.0015 13.8 5.9 12 67-78 74-85 (155)
123 1v96_A Hypothetical protein PH 21.5 37 0.0016 13.8 2.4 35 98-141 97-132 (149)
124 1vkf_A Glycerol uptake operon 21.3 38 0.0016 13.7 3.6 15 125-139 45-59 (188)
125 2ixa_A Alpha-N-acetylgalactosa 21.2 38 0.0016 13.7 4.4 31 111-141 90-120 (444)
126 2o4u_X Dimeric dihydrodiol deh 20.7 39 0.0016 13.7 5.3 31 111-141 65-95 (334)
127 1cw0_A Protein (DNA mismatch e 20.6 24 0.001 14.9 0.8 12 131-142 102-113 (155)
128 3hzh_A Chemotaxis response reg 20.4 39 0.0017 13.6 7.5 93 64-173 50-151 (157)
129 1r8j_A KAIA; circadian clock p 20.4 39 0.0017 13.6 4.5 25 113-137 56-80 (289)
130 1jx7_A Hypothetical protein YC 20.4 39 0.0017 13.6 3.1 53 121-174 57-109 (117)
131 2ho3_A Oxidoreductase, GFO/IDH 20.2 40 0.0017 13.6 5.4 31 111-141 61-91 (325)
132 2vf7_A UVRA2, excinuclease ABC 20.2 40 0.0017 13.6 3.6 35 124-166 771-805 (842)
No 1
>2qip_A Protein of unknown function VPA0982; APC85975, structural genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus rimd 2210633}
Probab=100.00 E-value=8.4e-33 Score=224.25 Aligned_cols=153 Identities=29% Similarity=0.456 Sum_probs=134.1
Q ss_pred CCCCEEEEEEEHHHHHHHHHH-CCCCCCHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 788718999807899999985-0876798999999851792999999730688731467775799988975595697534
Q gi|254780936|r 3 DPREKIALFIDGANLYASSKA-LGFDIDYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKV 81 (182)
Q Consensus 3 ~~~~rvaIfID~~Nl~~~~~~-~~~~~d~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~ 81 (182)
++++||||||||+|+|++++. .++++||.+|++++.+.+++.++++|.+++.+... ..+.+.+...|++++.++
T Consensus 7 ~~~~rvaIfID~~Nl~~~~k~~~~~~~d~~~l~~~~~~~~~v~~~~~y~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 81 (165)
T 2qip_A 7 DHKEKIAILVDVQNVYYTCREAYRSNFDYNQFWYVATQEKEVVSAKAYAIASNDPKQ-----RQFHHILRGVGFEVMLKP 81 (165)
T ss_dssp CCCEEEEEEEEHHHHHHHHHHHHSSCBCHHHHHHHHTTTEEEEEEEEEECCCCCHHH-----HHHHHHHHHHTCEEEECC
T ss_pred CCCCEEEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCHHH-----HHHHHHHHHCCCEEEEEC
T ss_conf 887709999956768999987437776799999999638908999998236771655-----445789997693688634
Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCHHHHHHHC
Q ss_conf 58953788865435653299999999942115889998386658999999998-49889999831577654708999852
Q gi|254780936|r 82 AKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQR-KVKKVTIVSTVLSDPSMASDQLRRQA 160 (182)
Q Consensus 82 ~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~-~Gk~V~v~~~~~~~~~~~S~~L~~~a 160 (182)
...+.++ ..++++|+.|++|+|.+++++|++|||||||||+|++++||+ .|++|+++++ ++.+|.+|+++|
T Consensus 82 ~~~~~~~----~~~~~~Dv~l~id~~~~~~~~d~~vLvSgDsDf~p~v~~lr~~~gk~V~v~~~----~~~~s~~L~~~a 153 (165)
T 2qip_A 82 YIQRRDG----SAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGV----PRLTSQTLIDCA 153 (165)
T ss_dssp CCCCSSC----CCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEEC----GGGSCHHHHHHS
T ss_pred CEECCCC----CCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEC----CCCCCHHHHHHC
T ss_conf 4651678----78861179999999962776898999957762899999999858978999978----998839999869
Q ss_pred CCCEEHHH
Q ss_conf 11151899
Q gi|254780936|r 161 DYFMDLAY 168 (182)
Q Consensus 161 d~fi~l~~ 168 (182)
|+|++|++
T Consensus 154 d~fi~id~ 161 (165)
T 2qip_A 154 DNFVAIDD 161 (165)
T ss_dssp SEEEECSG
T ss_pred CEEEECCC
T ss_conf 98899173
No 2
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=93.90 E-value=0.34 Score=26.50 Aligned_cols=41 Identities=27% Similarity=0.213 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 53299999999942115889998386658999999998498899998
Q gi|254780936|r 97 SMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 97 ~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
.+|=-|+.-+-.....-+.++|+|+|.||..|+. -+|.++.
T Consensus 127 EADDvIatla~~~~~~~~~v~IvS~DkD~~QLv~------~~v~~~~ 167 (290)
T 1exn_A 127 EADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLT------DKVSRFS 167 (290)
T ss_dssp CHHHHHHHHHHHHGGGSSCEEEECSCGGGGGGCC------SSEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHCC------CCCCCCC
T ss_conf 2678998999998744975899935886444113------6664556
No 3
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=88.52 E-value=1.3 Score=22.93 Aligned_cols=81 Identities=6% Similarity=-0.029 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHH----HHHHHH---CCCCEEEEECCCHHH
Q ss_conf 8873146777579998897559569753458953788865435653299999----999942---115889998386658
Q gi|254780936|r 53 VGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAV----DAFEQS---EGLEHLVIFSGDGCF 125 (182)
Q Consensus 53 ~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~lai----D~~~~a---~~~d~~iLvSGD~Df 125 (182)
.........+...|.+.+...+-..... .... ..+..-+. +++... +.++ +|++++|..-
T Consensus 137 ~~~~~~~~~R~~g~~~~l~~~~~~~~~~--~~~~----------~~~~~~~~~~~~~~l~~~~~~p~i~-ai~~~~d~~a 203 (306)
T 2vk2_A 137 TVGASVAIDRKKGFAEAIKNAPNIKIIR--SQSG----------DFTRSKGKEVMESFIKAENNGKNIC-MVYAHNDDMV 203 (306)
T ss_dssp STTCHHHHHHHHHHHHHTTTCTTEEEEE--EEEC----------TTCHHHHHHHHHHHHHHTTTTTTCC-EEEESSHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEE--EEEC----------CCCHHHHHHHHHHHHHHHCCCCCCE-EEEECCHHHH
T ss_conf 7776089999999999998669985014--5522----------1004789999999998732588631-5873582999
Q ss_pred HHHHHHHHHCCCE----EEEEEEEC
Q ss_conf 9999999984988----99998315
Q gi|254780936|r 126 TTLVAALQRKVKK----VTIVSTVL 146 (182)
Q Consensus 126 ~pli~~lr~~Gk~----V~v~~~~~ 146 (182)
..+++.+++.|.+ |.++++..
T Consensus 204 ~g~~~al~~~G~~~~~di~i~g~D~ 228 (306)
T 2vk2_A 204 IGAIQAIKEAGLKPGKDILTGSIDG 228 (306)
T ss_dssp HHHHHHHHHTTCCBTTTBEEEEEEC
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf 9999999983999999579999998
No 4
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=88.26 E-value=1.3 Score=22.83 Aligned_cols=47 Identities=28% Similarity=0.237 Sum_probs=29.2
Q ss_pred HHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
Q ss_conf 755956975345895378886543565329999999994211588999838665899999
Q gi|254780936|r 71 HYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVA 130 (182)
Q Consensus 71 ~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~ 130 (182)
...|+.+...+ .-.+|=-||.=+-.....=..++|||||.||..|+.
T Consensus 117 ~~~~i~~~~~~-------------g~EADDiIa~l~~~~~~~~~~v~IvS~DkD~~QL~~ 163 (305)
T 3h7i_A 117 AYMPYIVMDID-------------KYEANDHIAVLVKKFSLEGHKILIISSDGDFTQLHK 163 (305)
T ss_dssp HHSSSEEECCT-------------TCCHHHHHHHHHHHHHHTTCCEEEECSSCCCGGGGG
T ss_pred HHCCCCCCCCC-------------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCC
T ss_conf 86394224678-------------815578999999988763984599917856655055
No 5
>3fxa_A SIS domain protein; YP_013136.1, putative sugar-phosphate isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=87.82 E-value=1.4 Score=22.66 Aligned_cols=109 Identities=12% Similarity=0.077 Sum_probs=63.9
Q ss_pred CCHHHHH---HHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 7989999---9985179299999973068873146777579998897559569753458953788865435653299999
Q gi|254780936|r 28 IDYRKLL---KAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAV 104 (182)
Q Consensus 28 ~d~~~L~---~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~lai 104 (182)
++...+. +.+.+-. .|.+.|+. ..+...-+.+...|.+.|..+.... |.++..
T Consensus 29 ~~~~~~~~av~~i~~a~--~rI~~~G~-----G~S~~ia~~~~~kl~~lG~~~~~~~-----------------d~~~~~ 84 (201)
T 3fxa_A 29 TSEEALVKTVEKIAECT--GKIVVAGC-----GTSGVAAKKLVHSFNCIERPAVFLT-----------------PSDAVH 84 (201)
T ss_dssp SCHHHHHHHHHHHHHCS--SCEEEECC-----THHHHHHHHHHHHHHHTTCCEEECC-----------------HHHHTT
T ss_pred CCHHHHHHHHHHHHHCC--CCEEEEEE-----CHHHHHHHHHHHHHHHCCCCEEECC-----------------CHHHHH
T ss_conf 08999999999998089--93899977-----7799999999999986899658579-----------------378899
Q ss_pred HHHHHHCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 9999421158899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
-.......-|.+|++|.-| +.+.+++.++++|..|++++-.. ...|.+.||..+.+
T Consensus 85 ~~~~~~~~~Dv~I~iS~SG~t~e~i~~~~~ak~~g~~vI~IT~~~------~s~la~~ad~~l~~ 143 (201)
T 3fxa_A 85 GTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENP------DSVIAKEADIFFPV 143 (201)
T ss_dssp TGGGGCCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCT------TSHHHHHCSEEEEC
T ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCC------CCCCCCCCCEEEEC
T ss_conf 884388978889987899995789999999998398089983689------99753447867865
No 6
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=86.81 E-value=1.6 Score=22.30 Aligned_cols=32 Identities=13% Similarity=-0.085 Sum_probs=24.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC-EEEEEEEEC
Q ss_conf 89998386658999999998498-899998315
Q gi|254780936|r 115 HLVIFSGDGCFTTLVAALQRKVK-KVTIVSTVL 146 (182)
Q Consensus 115 ~~iLvSGD~Df~pli~~lr~~Gk-~V~v~~~~~ 146 (182)
.+|+++.|.--..+++.|++.|. .|.++++..
T Consensus 193 ~~i~~~~d~~a~g~~~al~~~g~~dv~vvg~d~ 225 (291)
T 3l49_A 193 GAIWACWDVPMIGATQALQAAGRTDIRTYGVDG 225 (291)
T ss_dssp CEEEESSHHHHHHHHHHHHHTTCCSCEEEEEEC
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 769966878999999999983999856999939
No 7
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP complex, transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=86.09 E-value=1.8 Score=22.06 Aligned_cols=98 Identities=20% Similarity=0.172 Sum_probs=57.4
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--HCCCCEEEEECC
Q ss_conf 999997306887314677757999889755956975345895378886543565329999999994--211588999838
Q gi|254780936|r 44 IRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ--SEGLEHLVIFSG 121 (182)
Q Consensus 44 ~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~--a~~~d~~iLvSG 121 (182)
.|+....+..................|...|+++.... ++..-| +.++++. ...+|.+|++.|
T Consensus 25 kr~~vI~NP~SG~g~~~~~~~~i~~~l~~~g~~~~i~~------------T~~~g~---a~~~a~~~~~~~~d~IVv~GG 89 (337)
T 2qv7_A 25 KRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYA------------TEKIGD---ATLEAERAMHENYDVLIAAGG 89 (337)
T ss_dssp EEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEE------------CCSTTH---HHHHHHHHTTTTCSEEEEEEC
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE------------CCCCCH---HHHHHHHHHHCCCCEEEEECC
T ss_conf 35999999888987579999999999998799699998------------289226---999999987779999999906
Q ss_pred CHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHH
Q ss_conf 66589999999984988999983157765470899
Q gi|254780936|r 122 DGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQL 156 (182)
Q Consensus 122 D~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L 156 (182)
||=.-.++..+...+.++-+....-|-.+..++.|
T Consensus 90 DGTv~ev~~gl~~~~~~~plgiiP~GTgN~~Ar~l 124 (337)
T 2qv7_A 90 DGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRAL 124 (337)
T ss_dssp HHHHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEC
T ss_conf 56999999999861679618995499998131604
No 8
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=83.61 E-value=2.2 Score=21.48 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=36.1
Q ss_pred HCCCCEEEEECCCHHHH----HHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 21158899983866589----9999999849889999831577654708999852111518
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFT----TLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~----pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
....+.+||+|.|.+|. ++++.||+.|.++++++-..+....-+.....--|.||..
T Consensus 558 ~~~~~~~vicssd~~y~~~a~~~~~alk~~g~~~v~lAG~p~~~~~~~~~~~agvd~fi~~ 618 (637)
T 1req_B 558 KSGAQVADLCSSAKVYAQQGLEVAKALKAAGAKALYLSGAFKEFGDDAAEAEKLIDGRLFM 618 (637)
T ss_dssp HHTCSEEEEECCHHHHHHHHHHHHHHHHHTTCSEEEEESCGGGGGGGHHHHHHHCCCEECT
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCEEECC
T ss_conf 6599889995786106888999999999669985999727887423568997087605018
No 9
>3cvj_A Putative phosphoheptose isomerase; NP_244191.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=83.54 E-value=0.51 Score=25.42 Aligned_cols=56 Identities=18% Similarity=0.225 Sum_probs=40.0
Q ss_pred CCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCH-----HHHHHHCCCCEEH
Q ss_conf 1158899983866---589999999984988999983157765470-----8999852111518
Q gi|254780936|r 111 EGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMAS-----DQLRRQADYFMDL 166 (182)
Q Consensus 111 ~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S-----~~L~~~ad~fi~l 166 (182)
..=|.+|++|.-| +-+.+++.+|++|.+|+.++-.......+| ..|.+.||..++.
T Consensus 107 ~~~DvvI~iS~SG~t~~vi~a~~~AK~~G~~vIaIT~~~~S~~~~~~h~~g~~L~~~ad~~id~ 170 (243)
T 3cvj_A 107 TNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLDN 170 (243)
T ss_dssp CTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCEEEC
T ss_conf 9999999977899999999999999987994999808876755432344446256736766766
No 10
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=82.83 E-value=0.069 Score=30.85 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=56.2
Q ss_pred CCCCCCEEEEEEEHHHHHHHHH----H----CCCCC----CHH-HHHHHHHHCCEEEEEEEEECCCC-------------
Q ss_conf 9878871899980789999998----5----08767----989-99999851792999999730688-------------
Q gi|254780936|r 1 MFDPREKIALFIDGANLYASSK----A----LGFDI----DYR-KLLKAFRSRAIVIRAYYYTTVVG------------- 54 (182)
Q Consensus 1 m~~~~~rvaIfID~~Nl~~~~~----~----~~~~~----d~~-~L~~~l~~~~~l~~~~~y~~~~~------------- 54 (182)
|++|++|+ ++|||.|+.|..- . .|... -|- .|...+.. ..-..+..+.+..+
T Consensus 7 ~~~~~~~~-~liDg~~~~~r~~~a~~~~~~~~g~~t~a~~gf~~~l~~~~~~-~~~~~~v~fD~~~~~~R~~~~~~YKa~ 84 (832)
T 1bgx_T 7 LFEPKGRV-LLVDGHHLAYRTFHALKGLTTSRGEPVQAVYGFAKSLLKALKE-DGDAVIVVFDAKAPSFRHEAYGGYKAG 84 (832)
T ss_dssp CCCCCTTS-CCCCCSTHHHHTTSSCTTCBCSSSCBCSSSTTHHHHHHHGGGT-CCSCCCCCCCCSSSCSSSGGGGTTTSC
T ss_pred CCCCCCEE-EEEECCHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCHHHHCHHHCCC
T ss_conf 77989918-9996839999999768987689998812999999999999986-799799998087996513335664489
Q ss_pred --CCHHH-HHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
Q ss_conf --73146-77757999889755956975345895378886543565329999999994211588999838665899999
Q gi|254780936|r 55 --DPEQQ-FSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVA 130 (182)
Q Consensus 55 --~~~~~-~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~ 130 (182)
+.++. ........+.|...|+.+...| .-.+|=-|+.=+-.....=..++|+|+|.||..|+.
T Consensus 85 R~~~p~~l~~q~~~~~~~l~~~gi~~~~~~-------------~~EADD~i~t~a~~~~~~~~~v~i~s~DkD~~Qlv~ 150 (832)
T 1bgx_T 85 RAPTPEDFPRQLALIKELVDLLGLARLEVP-------------GYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLS 150 (832)
T ss_dssp CCCCCTTSTTGGGTHHHHHHHTTCCCCCCS-------------SSCHHHHHHHHHHHHHHHTCCBCCCCSSTTCCTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEEC-------------CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
T ss_conf 988977899999999999997899899578-------------937999999999999977992999807998050388
No 11
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=81.89 E-value=2.7 Score=20.95 Aligned_cols=104 Identities=18% Similarity=0.158 Sum_probs=61.1
Q ss_pred CCCHHH---HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHH
Q ss_conf 679899---99998517929999997306887314677757999889755956975345895378886543565329999
Q gi|254780936|r 27 DIDYRK---LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELA 103 (182)
Q Consensus 27 ~~d~~~---L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~la 103 (182)
.+|... +.+.+.+.. +.+.++.- ......+.+...|...|..+.... +....
T Consensus 31 ~id~~~i~~~v~~i~~a~---~I~i~G~G-----~S~~~A~~~~~~L~~~g~~~~~~~-----~~~~~------------ 85 (200)
T 1vim_A 31 HIDLETVGEMIKLIDSAR---SIFVIGAG-----RSGYIAKAFAMRLMHLGYTVYVVG-----ETVTP------------ 85 (200)
T ss_dssp HCCHHHHHHHHHHHHHSS---CEEEECSH-----HHHHHHHHHHHHHHHTTCCEEETT-----STTCC------------
T ss_pred HCCHHHHHHHHHHHHCCC---EEEEEECC-----HHHHHHHHHHHHHHHCCCCCCCCH-----HHHCC------------
T ss_conf 469999999999996699---08999896-----899999999999875598753203-----55414------------
Q ss_pred HHHHHHHCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 99999421158899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 104 VDAFEQSEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 104 iD~~~~a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
....=|.+|++|.-+ +...+++.++++|.+|+.++-.. ...|.+.||..+.+
T Consensus 86 -----~~~~~DvvI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~~~------~s~L~~~ad~~l~~ 140 (200)
T 1vim_A 86 -----RITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKR------DSSLAKMADVVMVV 140 (200)
T ss_dssp -----CCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCT------TSHHHHHCSEEEEC
T ss_pred -----CCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCC------CCHHHHHCCEEEEE
T ss_conf -----38999989985799774216999999998799699997999------99789959999993
No 12
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=80.54 E-value=3 Score=20.66 Aligned_cols=101 Identities=15% Similarity=0.076 Sum_probs=59.4
Q ss_pred HHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89999998517929999997306887314677757999889755956975345895378886543565329999999994
Q gi|254780936|r 30 YRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ 109 (182)
Q Consensus 30 ~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~ 109 (182)
+.++.+.+.+.. +.+.|+.- ......+.+...|...|+.+... .+... ..
T Consensus 27 i~~~~~~i~~a~---~I~i~G~G-----~S~~~a~~~~~~l~~lg~~~~~~-----~~~~~-----------------~~ 76 (186)
T 1m3s_A 27 ADQLADHILSSH---QIFTAGAG-----RSGLMAKSFAMRLMHMGFNAHIV-----GEILT-----------------PP 76 (186)
T ss_dssp HHHHHHHHHHCS---CEEEECSH-----HHHHHHHHHHHHHHHTTCCEEET-----TSTTC-----------------CC
T ss_pred HHHHHHHHHCCC---EEEEEECC-----HHHHHHHHHHHHHHHCCCCCCCC-----CCHHC-----------------CC
T ss_conf 999999997499---69999787-----89999999999998538766778-----81002-----------------57
Q ss_pred HCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 21158899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 110 SEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 110 a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
...-|.+|++|.-| +.+.+++.+|++|.+|+.++-.. ...|.+.||..+.+
T Consensus 77 l~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~------~s~la~~ad~~l~~ 130 (186)
T 1m3s_A 77 LAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINP------ESSIGKQADLIIRM 130 (186)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCT------TSHHHHHCSEEEEC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCC------CCHHHHHCCEEEEE
T ss_conf 9999999998389751469999999998799599997999------99679968999997
No 13
>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125}
Probab=73.95 E-value=4.5 Score=19.49 Aligned_cols=79 Identities=9% Similarity=-0.062 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH----CCCCEEEEECCCHHHHHHHHH
Q ss_conf 3146777579998897559569753458953788865435653299999999942----115889998386658999999
Q gi|254780936|r 56 PEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS----EGLEHLVIFSGDGCFTTLVAA 131 (182)
Q Consensus 56 ~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a----~~~d~~iLvSGD~Df~pli~~ 131 (182)
......+...|.+++...+..+...... ....|..-+...++.. +.+ .+|++++|.-...+++.
T Consensus 138 ~~~~~~R~~Gf~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~p~~-~~I~~~~d~~a~g~~~a 205 (305)
T 3g1w_A 138 QLNHQERTTGFKETLEAEFPAIEVIAVE-----------DGRGDSLHSRRVAHQLLEDYPNL-AGIFATEANGGVGVGDA 205 (305)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTEEEEEEE-----------ECTTCHHHHHHHHHHHHHHCTTE-EEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEE-----------CCCCCHHHHHHHHHHHHHCCCCC-CEEEECCCHHHHHHHHH
T ss_conf 2178899999999999868997311231-----------47875788999999998508986-07995584899999999
Q ss_pred HHHCCC--EEEEEEEEC
Q ss_conf 998498--899998315
Q gi|254780936|r 132 LQRKVK--KVTIVSTVL 146 (182)
Q Consensus 132 lr~~Gk--~V~v~~~~~ 146 (182)
+++.|+ .|.++++..
T Consensus 206 l~~~g~~~~v~vvg~d~ 222 (305)
T 3g1w_A 206 VRLESRAGEIQIISFDT 222 (305)
T ss_dssp HHHTTCTTTSEEEEESC
T ss_pred HHHCCCCCCEEEEEECC
T ss_conf 99759999829999489
No 14
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=73.23 E-value=4.7 Score=19.39 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=28.7
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEEEEC
Q ss_conf 999942115889998386658999999998498--899998315
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVK--KVTIVSTVL 146 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk--~V~v~~~~~ 146 (182)
+++...+.+| +|+.++|.--..+++.+++.|+ ++.++++..
T Consensus 182 ~~l~~~p~~d-aI~~~~d~~a~ga~~A~~~~g~~~~i~vvg~D~ 224 (303)
T 3d02_A 182 DLMKTYPDLK-AVVSFGSNGPIGAGRAVKEKRAKNKVAVYGMMI 224 (303)
T ss_dssp HHHHHCTTEE-EEEESSTTHHHHHHHHHHHTTCTTTCEEEECCC
T ss_pred HHHHHCCCCE-EEEECCCHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 9997299972-999889779999999999769999829999998
No 15
>3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum}
Probab=73.14 E-value=4.7 Score=19.37 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=24.7
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEEE
Q ss_conf 999942115889998386658999999998498899-9983
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVT-IVST 144 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~-v~~~ 144 (182)
+++...+.+| +|++++|.-=.-+++.|++.|.++. ++++
T Consensus 188 ~~l~~~~~~~-aI~~~~D~~A~g~~~al~~~g~~~~~~v~~ 227 (293)
T 3l6u_A 188 QVIDSGIPFD-AVYCHNDDIAMGVLEALKKAKISGKIVVGI 227 (293)
T ss_dssp HHHHTTCCCS-EEEESSHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred HHHCCCCCCE-EEEECCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 8742289961-999788189999999999769999979999
No 16
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=72.42 E-value=4.1 Score=19.74 Aligned_cols=80 Identities=13% Similarity=0.013 Sum_probs=45.3
Q ss_pred HHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHH----HHHHHCC--
Q ss_conf 9998897559569753458953788865435653299999999942--1158899983866589999----9999849--
Q gi|254780936|r 65 PLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSGDGCFTTLV----AALQRKV-- 136 (182)
Q Consensus 65 ~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSGD~Df~pli----~~lr~~G-- 136 (182)
.+...+...||+|...|... ..+ ++...+ ...++++|+|-|+++.+++ +.||+.|
T Consensus 623 ~iA~~F~d~GfeV~~~~~f~------------Tpe-----E~a~aA~e~~a~vvgics~d~~h~~lvp~l~~~Lk~~g~~ 685 (762)
T 2xij_A 623 VIATGFADLGFDVDIGPLFQ------------TPR-----EVAQQAVDADVHAVGVSTLAAGHKTLVPELIKELNSLGRP 685 (762)
T ss_dssp HHHHHHHHTTCEEEECCTTC------------CHH-----HHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHCCCEEEECCCCC------------CHH-----HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99999985790285278778------------999-----9999999769999999268765688999999999966999
Q ss_pred -CEEEEEEEECCCCCCCHHHHHHHC-CCCE
Q ss_conf -889999831577654708999852-1115
Q gi|254780936|r 137 -KKVTIVSTVLSDPSMASDQLRRQA-DYFM 164 (182)
Q Consensus 137 -k~V~v~~~~~~~~~~~S~~L~~~a-d~fi 164 (182)
..|++-+.. +. .. -..|+++- +.|+
T Consensus 686 ~i~VvvgGvi-P~-~d-~~~l~~aGV~~if 712 (762)
T 2xij_A 686 DILVMCGGVI-PP-QD-YEFLFEVGVSNVF 712 (762)
T ss_dssp TSEEEEEESC-CG-GG-HHHHHHHTCCEEE
T ss_pred CCEEEEECCC-CH-HH-HHHHHHCCCCEEE
T ss_conf 8679980778-87-88-9999986988783
No 17
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase, PHI, structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=72.21 E-value=4.1 Score=19.78 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=57.0
Q ss_pred HHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89999998517929999997306887314677757999889755956975345895378886543565329999999994
Q gi|254780936|r 30 YRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ 109 (182)
Q Consensus 30 ~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~ 109 (182)
..++.+.+.+.. +.+.|+.. ......+.+...|...|+.+... .+.... .
T Consensus 30 i~~~~~~i~~a~---~I~i~G~G-----~S~~ia~~~~~~l~~~g~~~~~~-----~~~~~~-----------------~ 79 (180)
T 1jeo_A 30 LDSLIDRIIKAK---KIFIFGVG-----RSGYIGRCFAMRLMHLGFKSYFV-----GETTTP-----------------S 79 (180)
T ss_dssp HHHHHHHHHHCS---SEEEECCH-----HHHHHHHHHHHHHHHTTCCEEET-----TSTTCC-----------------C
T ss_pred HHHHHHHHHCCC---EEEEEECC-----HHHHHHHHHHHHHHHCCCCEEEE-----EECCCC-----------------C
T ss_conf 999999997899---49999777-----99999999999999739971886-----421235-----------------6
Q ss_pred HCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 21158899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 110 SEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 110 a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
...=|.+|++|.-| +.+.+++.++++|.+|+.++- . .+. |.+.||..+.+
T Consensus 80 ~~~~Dv~i~iS~sG~t~~~i~~~~~ak~~g~~vI~IT~-~-----~~~-l~~~aD~~l~~ 132 (180)
T 1jeo_A 80 YEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVC-E-----CGN-VVEFADLTIPL 132 (180)
T ss_dssp CCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEES-S-----CCG-GGGGCSEEEEC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC-C-----CCC-CHHHCCEEEEC
T ss_conf 89999899975999808999999999975997999969-9-----997-57777788862
No 18
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=71.19 E-value=4.9 Score=19.28 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=46.8
Q ss_pred HHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCHHHHHH----HHHHHHCCC-
Q ss_conf 9998897559569753458953788865435653299999999942--115889998386658999----999998498-
Q gi|254780936|r 65 PLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSGDGCFTTL----VAALQRKVK- 137 (182)
Q Consensus 65 ~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSGD~Df~pl----i~~lr~~Gk- 137 (182)
.|...+...||+|...+.. ...+ ++.+.+ ...++++|+|.|+++.++ ++.||+.|.
T Consensus 615 ~fA~~f~~~Gf~V~~~~~f------------~tpe-----e~a~aa~es~a~vv~ics~d~~y~~~vp~l~~~Lk~ag~~ 677 (727)
T 1req_A 615 VIATAYADLGFDVDVGPLF------------QTPE-----ETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRP 677 (727)
T ss_dssp HHHHHHHHHTCEEEECCTT------------BCHH-----HHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHCCCEEECCCCC------------CCHH-----HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9999998589617548888------------9999-----9999999769999999178745588999999999967998
Q ss_pred --EEEEEEEECCCCCCCHHHHHHHC-CCCE
Q ss_conf --89999831577654708999852-1115
Q gi|254780936|r 138 --KVTIVSTVLSDPSMASDQLRRQA-DYFM 164 (182)
Q Consensus 138 --~V~v~~~~~~~~~~~S~~L~~~a-d~fi 164 (182)
.|++-+.. + .---..|+++- +.|+
T Consensus 678 ~i~VilgG~i-P--~~d~~~L~~aGV~~if 704 (727)
T 1req_A 678 DILITVGGVI-P--EQDFDELRKDGAVEIY 704 (727)
T ss_dssp TSEEEEEESC-C--GGGHHHHHHTTEEEEE
T ss_pred CCEEEEECCC-C--HHHHHHHHHCCCCEEE
T ss_conf 8579980778-8--7879999977988684
No 19
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=70.96 E-value=5.3 Score=19.06 Aligned_cols=80 Identities=8% Similarity=0.054 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHCC-CEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH----HHCCCCEEEEECCCHHHHH
Q ss_conf 8873146777579998897559-5697534589537888654356532999999999----4211588999838665899
Q gi|254780936|r 53 VGDPEQQFSPLHPLLDWLHYNG-FQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE----QSEGLEHLVIFSGDGCFTT 127 (182)
Q Consensus 53 ~~~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~----~a~~~d~~iLvSGD~Df~p 127 (182)
.........+...|.+.+...+ .++... . ....|..-+..+++ .-+.+| +|++++|.--+.
T Consensus 137 ~~~~~~~~~r~~gf~~~l~~~~~~~~v~~-----~--------~~~~~~~~~~~~~~~lL~~~pdi~-aI~~~nD~~a~G 202 (325)
T 2x7x_A 137 LSGSTPAMERHQGFMAAISKFPDIKLIDK-----A--------DAAWERGPAEIEMDSMLRRHPKID-AVYAHNDRIAPG 202 (325)
T ss_dssp CTTSHHHHHHHHHHHHHHHTCTEEEEEEE-----E--------ECTTSHHHHHHHHHHHHHHCSCCC-EEEESSTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEEE-----E--------CCCCCHHHHHHHHHHHHCCCCCCC-EEEECCCHHHHH
T ss_conf 88750899999999999997799853668-----5--------167654899999999741388887-798568389999
Q ss_pred HHHHHHHCCC--EEEEEEEEC
Q ss_conf 9999998498--899998315
Q gi|254780936|r 128 LVAALQRKVK--KVTIVSTVL 146 (182)
Q Consensus 128 li~~lr~~Gk--~V~v~~~~~ 146 (182)
+++.+++.|+ +|.++++..
T Consensus 203 a~~Al~~~G~~~~i~vvG~D~ 223 (325)
T 2x7x_A 203 AYQAAKMAGREKEMIFVGIDA 223 (325)
T ss_dssp HHHHHHHTTCTTSSEEEEEEC
T ss_pred HHHHHHHCCCCCCEEEEEECC
T ss_conf 999999769999939999899
No 20
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=68.38 E-value=6 Score=18.72 Aligned_cols=30 Identities=27% Similarity=0.231 Sum_probs=23.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC--EEEEEEE
Q ss_conf 89998386658999999998498--8999983
Q gi|254780936|r 115 HLVIFSGDGCFTTLVAALQRKVK--KVTIVST 144 (182)
Q Consensus 115 ~~iLvSGD~Df~pli~~lr~~Gk--~V~v~~~ 144 (182)
.+|++++|.=-..++..+++.|. ++.++++
T Consensus 190 ~ai~~~~D~~a~g~~~al~~~g~~~~i~v~g~ 221 (313)
T 3m9w_A 190 DAVVASNDATAGGAIQALSAQGLSGKVAISGQ 221 (313)
T ss_dssp CEEEESSHHHHHHHHHHHHTTTCTTTSEECCC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 08996685899999999997799998569997
No 21
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=67.78 E-value=6.2 Score=18.64 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=39.7
Q ss_pred HHCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 421158899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 109 QSEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 109 ~a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
+++.=|.++++|+.| ..+.+++.+|++|.+|+.++-.. ...|.+.||.-+.+
T Consensus 113 ~~~~gDvli~iS~SG~s~~ii~a~~~Ak~~g~~~iaitg~~------~~~l~~~~D~~i~i 167 (198)
T 2xbl_A 113 LGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNR------GGEMRELCDLLLEV 167 (198)
T ss_dssp HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSC------CCTHHHHCSEEEEC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCC------CCHHHHHCCEEEEE
T ss_conf 27999989997089997689999999998599899996899------85468859999997
No 22
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=67.22 E-value=5.1 Score=19.18 Aligned_cols=64 Identities=16% Similarity=0.074 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 532999999999421158899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 97 SMDVELAVDAFEQSEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 97 ~~Dv~laiD~~~~a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
+.+...+-..-.+++.=|.+|++|+.| ..+.+++.+|++|.+|+.++-.. ...|.+.||--+.+
T Consensus 116 ~~~~~f~~ql~~~~~~gDvli~iS~SG~s~nvi~al~~Ak~~G~~ti~lTg~~------g~~l~~~~Di~I~v 182 (212)
T 2i2w_A 116 GFNDIFSRYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKD------GGKMAGTADIEIRV 182 (212)
T ss_dssp SCSSHHHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETT------CGGGTTCSSEEEEE
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCC------CCHHHHHCCEEEEC
T ss_conf 78999999999857898879998089998328999999998599899997788------73367739989986
No 23
>3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg}
Probab=64.41 E-value=7.2 Score=18.24 Aligned_cols=80 Identities=13% Similarity=0.044 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH----CCCCEEEEECCCHHHHHH
Q ss_conf 8873146777579998897559569753458953788865435653299999999942----115889998386658999
Q gi|254780936|r 53 VGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS----EGLEHLVIFSGDGCFTTL 128 (182)
Q Consensus 53 ~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a----~~~d~~iLvSGD~Df~pl 128 (182)
.........+...|.+.+...+.++... .. .+.+..-+..++... ++++ +|++.+|.--..+
T Consensus 140 ~~~~~~~~~R~~g~~~~l~~~~~~~~~~---~~----------~~~~~~~~~~~~~~~l~~~~~~~-~I~~~~d~~a~g~ 205 (289)
T 3brs_A 140 VKNSKTAMDREEGLKIGLSDDSNKIEAI---YY----------CDSNYDKAYDGTVELLTKYPDIS-VMVGLNQYSATGA 205 (289)
T ss_dssp CTTSHHHHHHHHHHHHHHGGGGGGEEEE---EE----------CTTCHHHHHHHHHHHHHHCTTEE-EEEESSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEE---EE----------CCCCCHHHHHHHHHHHHCCCCCC-EEECCCCHHHHHH
T ss_conf 7788409899999999998659960378---83----------15640668999999871389864-8981783999999
Q ss_pred HHHHHHCCCE--EEEEEEEC
Q ss_conf 9999984988--99998315
Q gi|254780936|r 129 VAALQRKVKK--VTIVSTVL 146 (182)
Q Consensus 129 i~~lr~~Gk~--V~v~~~~~ 146 (182)
++.+++.|++ |.++++..
T Consensus 206 ~~al~~~g~~~~v~i~g~D~ 225 (289)
T 3brs_A 206 ARAIKDMSLEAKVKLVCIDS 225 (289)
T ss_dssp HHHHHHTTCTTTSEEEEEES
T ss_pred HHHHHHCCCCCCCEEEEECC
T ss_conf 99999769999968999889
No 24
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structural genomics, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343}
Probab=63.95 E-value=7.3 Score=18.18 Aligned_cols=102 Identities=10% Similarity=-0.017 Sum_probs=42.8
Q ss_pred HHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99851792999999730688731467775799988975595697534589537888654356532999999999421158
Q gi|254780936|r 35 KAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLE 114 (182)
Q Consensus 35 ~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d 114 (182)
+.+.+.+.+..................+...|.+.+...+..+........... .......+-+++...+.++
T Consensus 130 ~~~~~~~~i~~~~~~~~g~~~~~~~~~R~~Gf~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~l~~~pdi~ 202 (304)
T 3gbv_A 130 LLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADL-------NIEDSRMLDDFFREHPDVK 202 (304)
T ss_dssp HHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSC-------SSCHHHHHHHHHHHCTTCC
T ss_pred HHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC-------HHHHHHHHHHHHHHCCCCC
T ss_conf 972388529999335688988779999999999999986999728998723787-------8999999998874399865
Q ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEEEE
Q ss_conf 899983866589999999984-9889999831
Q gi|254780936|r 115 HLVIFSGDGCFTTLVAALQRK-VKKVTIVSTV 145 (182)
Q Consensus 115 ~~iLvSGD~Df~pli~~lr~~-Gk~V~v~~~~ 145 (182)
.++- .+|. ..-+...+++. ...+.++++.
T Consensus 203 ~i~~-~~~~-~~~~~~~~~~~~~~~i~ivg~d 232 (304)
T 3gbv_A 203 HGIT-FNSK-VYIIGEYLQQRRKSDFSLIGYD 232 (304)
T ss_dssp EEEE-SSSC-THHHHHHHHHTTCCSCEEEEES
T ss_pred EEEE-CCCH-HHHHHHHHHHHCCCCEEEEEEC
T ss_conf 8998-1979-9999999997089965999966
No 25
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} SCOP: c.93.1.1 PDB: 1tm2_A 3ejw_A*
Probab=62.19 E-value=7.9 Score=17.98 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHH----HCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 5329999999994----21158899983866589999999984988999
Q gi|254780936|r 97 SMDVELAVDAFEQ----SEGLEHLVIFSGDGCFTTLVAALQRKVKKVTI 141 (182)
Q Consensus 97 ~~Dv~laiD~~~~----a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v 141 (182)
+.+..-+..++.. -+.+| +|+.++|.--.-+++.+++.|+...+
T Consensus 170 ~~~~~~~~~~~~~~l~~~p~~d-aI~~~~d~~a~ga~~Al~~~g~~~~~ 217 (316)
T 1tjy_A 170 YNDATKSLQTAEGIIKAYPDLD-AIIAPDANALPAAAQAAENLKRNNLA 217 (316)
T ss_dssp TTCHHHHHHHHHHHHHHCSSCC-EEEECSTTHHHHHHHHHHHTTCCSCE
T ss_pred CCCHHHHHHHHHHHHHHCCCCC-EEEECCCHHHHHHHHHHHHCCCCCCE
T ss_conf 4678899999999996499984-89989868999999999967989988
No 26
>2poc_A D-fructose-6-, isomerase domain of glutamine-fructose-6- phosphate transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans SC5314} PDB: 2put_A* 2puv_A* 2puw_A*
Probab=60.78 E-value=8.4 Score=17.83 Aligned_cols=30 Identities=3% Similarity=0.134 Sum_probs=15.1
Q ss_pred EEEEECCCH---HHHHHHHHHHHCCCEEEEEEE
Q ss_conf 899983866---589999999984988999983
Q gi|254780936|r 115 HLVIFSGDG---CFTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 115 ~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~ 144 (182)
.++|.++|. ....++..++++|.+|++++.
T Consensus 274 v~~l~~~~~~~~~~~~~~~~~~~~~~~v~~I~~ 306 (367)
T 2poc_A 274 IIAFATRDSLFPKVMSAIEQVTARDGRPIVICN 306 (367)
T ss_dssp EEEECCGGGCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 799966972589999899999977984999995
No 27
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=60.64 E-value=5.4 Score=19.01 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=20.3
Q ss_pred CCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEE
Q ss_conf 158899983866---589999999984988999983
Q gi|254780936|r 112 GLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 112 ~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~ 144 (182)
....++++.|-. .+...+..+.++|++|+++--
T Consensus 190 ~p~~~vviG~G~ig~e~A~~~~~~~~~G~~Vtlve~ 225 (495)
T 2wpf_A 190 PPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYR 225 (495)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 887599986364663065899998728988999997
No 28
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=58.70 E-value=9.1 Score=17.60 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=48.8
Q ss_pred HHHHHHHHHCCCEEEEEE------EEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCC-EEEEECCCHHHHHHHHHHHHCC
Q ss_conf 799988975595697534------589537888654356532999999999421158-8999838665899999999849
Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKV------AKEFTENCGRKRVKSSMDVELAVDAFEQSEGLE-HLVIFSGDGCFTTLVAALQRKV 136 (182)
Q Consensus 64 ~~~~~~l~~~g~~v~~~~------~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d-~~iLvSGD~Df~pli~~lr~~G 136 (182)
.-....|+..|+++...- +.+.+|+.+ ...++-+|..=++.-+.-. .+| ++..+..|+-...++..-.-.+
T Consensus 26 lYl~~~Lk~~G~~v~Va~npAAlkLlevaDpek-~Ylk~~vdld~~i~~i~e~-d~d~i~~FvHNDagvsY~~T~k~~~~ 103 (157)
T 1kjn_A 26 IYTSHKLKKKGFRVTVTANPAALRLVQVADPEG-IYTDEMVDLESCINELAEG-DYEFLAGFVPNDAAAAYLVTFAGILN 103 (157)
T ss_dssp HHHHHHHHHTTCEEEEEECHHHHHHHHHHSTTC-CSCSEEEEHHHHHHHCCTT-SCSEEEEEESSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCC-CHHCCCCCHHHHHHHHHHC-CCCEEEEEEECCCHHHHHHHHHHHHC
T ss_conf 999999976697459965888873611018764-1010511499986467647-97489999726513768999998727
Q ss_pred CEEEEEEEE
Q ss_conf 889999831
Q gi|254780936|r 137 KKVTIVSTV 145 (182)
Q Consensus 137 k~V~v~~~~ 145 (182)
++...+.|.
T Consensus 104 ~~~~aiVFG 112 (157)
T 1kjn_A 104 TETLAIIFD 112 (157)
T ss_dssp SEEEEEEEC
T ss_pred CCEEEEEEC
T ss_conf 874899933
No 29
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=58.67 E-value=9.1 Score=17.60 Aligned_cols=88 Identities=10% Similarity=-0.073 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 73146777579998897559569753458953788865435653299999999942115889998386658999999998
Q gi|254780936|r 55 DPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQR 134 (182)
Q Consensus 55 ~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~ 134 (182)
.......+...|.+++...+............+.. ...+.......+.+.+...+.. ++|+++.|.--..+++.+++
T Consensus 142 ~~~~~~~r~~g~~~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~-~ai~~~~d~~a~g~~~~l~~ 218 (301)
T 3miz_A 142 ILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGP--VGAENNYVFAAATEMLKQDDRP-TAIMSGNDEMAIQIYIAAMA 218 (301)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESS--TTSCEECHHHHHHHHHTSTTCC-SEEEESSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCC--HHHHHHHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHHH
T ss_conf 45641466599999999859986762466403453--0466779999999999559999-83003889999999999998
Q ss_pred CCCE----EEEEEEE
Q ss_conf 4988----9999831
Q gi|254780936|r 135 KVKK----VTIVSTV 145 (182)
Q Consensus 135 ~Gk~----V~v~~~~ 145 (182)
.|.+ +.|+++.
T Consensus 219 ~g~~vp~di~ivg~d 233 (301)
T 3miz_A 219 LGLRIPQDVSIVGFD 233 (301)
T ss_dssp TTCCHHHHCEEECSB
T ss_pred HCCCCCCCCEEEECC
T ss_conf 199889630024127
No 30
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=58.23 E-value=9.3 Score=17.55 Aligned_cols=52 Identities=10% Similarity=-0.028 Sum_probs=38.2
Q ss_pred HHCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 421158899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 109 QSEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 109 ~a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
++..=|.+|.+|+.+ ..+.+++.++++|.+|+.++-.. ...|.+.||.-+.+
T Consensus 107 ~~~~gDvlI~iS~SG~s~nii~a~~~Ak~~g~~~i~ltg~~------~~~l~~~~D~~i~v 161 (188)
T 1tk9_A 107 LGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKG------GGMMNKLCDHNLVV 161 (188)
T ss_dssp HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGG------GTTHHHHCSEEEEE
T ss_pred HCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCC------CHHHHHHCCEEEEE
T ss_conf 37899989998289999557789999998799899995789------52679868988997
No 31
>2fdr_A Conserved hypothetical protein; SAD, structural genomics, HAD-superfamily hydrolase, putative B-phosphoglucomutase, PSI; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6
Probab=57.52 E-value=9.5 Score=17.48 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=33.2
Q ss_pred EECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHH-CCCCE-EHHHHHHHHCC
Q ss_conf 983866589999999984988999983157765470899985-21115-18997876225
Q gi|254780936|r 118 IFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQ-ADYFM-DLAYLKNEIAR 175 (182)
Q Consensus 118 LvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~-ad~fi-~l~~l~~~i~r 175 (182)
++-||+ ..=++.+++.|.+++.++............|.++ ||.++ +++++.+.+++
T Consensus 164 l~IgD~--~~Di~aA~~~G~~~i~v~~~~~~~~~~~~~l~~~~~d~~i~~~~eL~~ll~~ 221 (229)
T 2fdr_A 164 VVVEDS--VHGIHGARAAGMRVIGFTGASHTYPSHADRLTDAGAETVISRMQDLPAVIAA 221 (229)
T ss_dssp EEEESS--HHHHHHHHHTTCEEEEECCSTTCCTTHHHHHHHHTCSEEESCGGGHHHHHHH
T ss_pred EEEECC--HHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHCCCCEEECCHHHHHHHHHH
T ss_conf 998058--8789999986998999847977874317789768999998999999999999
No 32
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile 630}
Probab=55.73 E-value=9.7 Score=17.43 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 5899999999849889999831577654708999852111518
Q gi|254780936|r 124 CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 124 Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
|-+.+++.+++.|..++.++-.. ...|.+.||..+.+
T Consensus 97 eti~a~~~a~~~ga~~iaiT~~~------~S~la~~ad~~i~~ 133 (352)
T 3g68_A 97 STYNAMKLAEDKGCKIASMAGCK------NALIDEISDYILTV 133 (352)
T ss_dssp HHHHHHHHHHHTTCEEEEEESST------TCGGGGGCSEECCC
T ss_pred HHHHHHHHHHHCCCEEECCCCCC------CCCCCCCCCCCCCC
T ss_conf 99999999987797165244777------78211005642102
No 33
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=54.36 E-value=11 Score=17.16 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=22.9
Q ss_pred HHHHHHHHHHH--CCCEEEEEEEECCCCCCCHHHHHHHCCCCEEHHHH
Q ss_conf 58999999998--49889999831577654708999852111518997
Q gi|254780936|r 124 CFTTLVAALQR--KVKKVTIVSTVLSDPSMASDQLRRQADYFMDLAYL 169 (182)
Q Consensus 124 Df~pli~~lr~--~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l~~l 169 (182)
+|...+..+.. .+..+.+.. +....+-.+..+.+...-.++.+
T Consensus 135 ~f~~~~~~~~~~~~~~~~~~~~---P~~~~~K~eii~~~~~~~~~~~~ 179 (219)
T 3bl5_A 135 EFVKSCNVTVNLAMEKPFVIHT---PLMWLNKAETWKLADELGALDFV 179 (219)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEC---TTTTCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEC---CCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 8999999999744455038972---40037299999999982895501
No 34
>3etn_A Putative phosphosugar isomerase involved in capsule formation; YP_209877.1, structural genomics; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=51.41 E-value=12 Score=16.86 Aligned_cols=110 Identities=11% Similarity=0.064 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHCC--EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 9899999985179--29999997306887314677757999889755956975345895378886543565329999999
Q gi|254780936|r 29 DYRKLLKAFRSRA--IVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDA 106 (182)
Q Consensus 29 d~~~L~~~l~~~~--~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~ 106 (182)
++++.++.+.+.- .--|.+.|+. ..+...-+.+...|.+.|+.+.... |..+..-.
T Consensus 43 ~~e~~v~~i~~~i~~~~grI~~~Gv-----G~S~~vA~~~~~kl~~lG~~~~~~~-----------------d~~~~~~~ 100 (220)
T 3etn_A 43 AYEKAVELIVEQIHRKKGKLVTSGM-----GKAGQIAMNIATTFCSTGIPSVFLH-----------------PSEAQHGD 100 (220)
T ss_dssp HHHHHHHHHHHHTTTTCCCEEEECS-----HHHHHHHHHHHHHHHHTTCCEEECC-----------------TTGGGBTG
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEE-----CHHHHHHHHHHHHHHHCCCCCEECC-----------------CHHHHHHH
T ss_conf 7999999999999717996999970-----4799999999999998399405278-----------------17788888
Q ss_pred HHHHCCCCEEEEECCCH---HHHHHHHHHHH--CCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 99421158899983866---58999999998--49889999831577654708999852111518
Q gi|254780936|r 107 FEQSEGLEHLVIFSGDG---CFTTLVAALQR--KVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 107 ~~~a~~~d~~iLvSGD~---Df~pli~~lr~--~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
+.....=|.+|++|.-| +.+.+++.+|+ .|.+++.++- . ....|.+.||..+.+
T Consensus 101 ~~~~~~~DvlI~iS~SG~T~evi~~~~~ak~~~~~~~vI~IT~---~---~~S~lak~aD~~L~~ 159 (220)
T 3etn_A 101 LGILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITG---N---PDSPLASESDVCLST 159 (220)
T ss_dssp GGGCCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEES---C---TTSHHHHHSSEEEEC
T ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEE---C---CCCCCCCCCCEEEEC
T ss_conf 5158888889998289986658888999874046871588860---5---887421358878867
No 35
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=51.23 E-value=12 Score=16.90 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=27.4
Q ss_pred EEEEEC-CC---H-HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCC
Q ss_conf 899983-86---6-589999999984988999983157765470899985211
Q gi|254780936|r 115 HLVIFS-GD---G-CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADY 162 (182)
Q Consensus 115 ~~iLvS-GD---~-Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~ 162 (182)
.+||+| |. + +-..+++++|+.|.+|.++++.. ...+..|...+.+
T Consensus 125 vviliTDG~~~~~~~~~~~a~~lk~~gi~I~~iGiG~---~~~~ell~~~~~~ 174 (178)
T 2xgg_A 125 LVIGMTDGESDSDFRTVRAAKEIRELGGIVTVLAVGH---YVAAALVPRGSHH 174 (178)
T ss_dssp EEEEEESSCCCHHHHHSHHHHHHHHTTCEEEEEECC-----------------
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEECC---CCHHHCCCCCCCC
T ss_conf 3699843887887379999999997899899999787---5244256666445
No 36
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=51.22 E-value=11 Score=17.12 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=31.7
Q ss_pred HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 999994211588999838665899999999849889999831
Q gi|254780936|r 104 VDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTV 145 (182)
Q Consensus 104 iD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~ 145 (182)
-+++.+......++++-|--==++++..+.+.|++|.++.-.
T Consensus 176 ~~~~~l~~~pk~vvIIGgG~ig~E~A~~l~~lG~~Vtlv~~~ 217 (479)
T 2hqm_A 176 DGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRG 217 (479)
T ss_dssp HHHHHCSSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred HHHHCHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 897431106986999998889999999999749879999676
No 37
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=50.49 E-value=12 Score=16.77 Aligned_cols=73 Identities=15% Similarity=0.114 Sum_probs=41.1
Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHH----HHHCCCCEEEEECCCHHHHHHHHHHH-HCCCE
Q ss_conf 79998897559569753458953788865435653299999999----94211588999838665899999999-84988
Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAF----EQSEGLEHLVIFSGDGCFTTLVAALQ-RKVKK 138 (182)
Q Consensus 64 ~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~----~~a~~~d~~iLvSGD~Df~pli~~lr-~~Gk~ 138 (182)
......+...||++.........+ ......++..-..++. ...+.+|.++|.+..=-..+++..|. ..||.
T Consensus 132 ~~~~~~~~~~G~~V~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~pd~daI~iscT~~~t~~~i~~lE~~lg~P 207 (240)
T 3ixl_A 132 ERLAAFLAEESLVPTGCRSLGITG----VEAMARVDTATLVDLCVRAFEAAPDSDGILLSSGGLLTLDAIPEVERRLGVP 207 (240)
T ss_dssp HHHHHHHHHTTCEEEEEEECCCCC----HHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEECTTSCCTTHHHHHHHHHSSC
T ss_pred HHHHHHHHHCCCCCCCEEEECCCC----CCCCCEECHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 999999997398623223556776----6533234787799999998733888768998578861889999999998989
Q ss_pred EE
Q ss_conf 99
Q gi|254780936|r 139 VT 140 (182)
Q Consensus 139 V~ 140 (182)
|+
T Consensus 208 Vi 209 (240)
T 3ixl_A 208 VV 209 (240)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
No 38
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=50.36 E-value=12 Score=16.76 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 3565329999999994211--588999838665899999999849889999
Q gi|254780936|r 94 VKSSMDVELAVDAFEQSEG--LEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 94 ~kk~~Dv~laiD~~~~a~~--~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
.+.+.|...-..++.-.++ +|++||=+|=+-+.-+++. .+.|.+|+|+
T Consensus 106 ~~~~~~~~~~~~~~~~~p~et~DVlVVG~G~AGL~AAi~A-ae~GakVlvl 155 (571)
T 1y0p_A 106 AELAKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISA-TDSGAKVILI 155 (571)
T ss_dssp TGGGGGHHHHHHHHHSCCSEECSEEEECCSHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCHHHCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHH-HHCCCCEEEE
T ss_conf 3201142110022468998850399989869999999999-9889948999
No 39
>3knz_A Putative sugar binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.50A {Salmonella enterica subsp}
Probab=50.12 E-value=13 Score=16.74 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=30.0
Q ss_pred CCC-HHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 386-65899999999849889999831577654708999852111518
Q gi|254780936|r 120 SGD-GCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 120 SGD-~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
||. .|-+.+++.+|+.|..++.++-.. ...|.++||..+.+
T Consensus 107 SG~T~eti~Al~~ak~~ga~~i~iTn~~------~S~la~~~d~~i~~ 148 (366)
T 3knz_A 107 GGGSLSTLAAMERARNVGHITASMAGVA------PATIDRAADYILTV 148 (366)
T ss_dssp SSCCHHHHHHHHHHHHTTCEEEEEESSS------SCGGGGGCSEECCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCCC------CCHHHHCCCCCCCC
T ss_conf 9498899999999997298378337888------65655126743203
No 40
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=49.77 E-value=13 Score=16.70 Aligned_cols=87 Identities=17% Similarity=0.209 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC----CCCCCCCCCCHHHHHHHHHH-HHCCCCEEEEECCCHHHHHHHHH
Q ss_conf 14677757999889755956975345895378----88654356532999999999-42115889998386658999999
Q gi|254780936|r 57 EQQFSPLHPLLDWLHYNGFQVVAKVAKEFTEN----CGRKRVKSSMDVELAVDAFE-QSEGLEHLVIFSGDGCFTTLVAA 131 (182)
Q Consensus 57 ~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~----~~~~~~kk~~Dv~laiD~~~-~a~~~d~~iLvSGD~Df~pli~~ 131 (182)
++..........+|...|+++....-.....+ ........+..+.. .+.-. ....+|.+|.+-|||=|..+++.
T Consensus 16 ~~a~~~a~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~DlvivlGGDGT~L~aa~~ 94 (307)
T 1u0t_A 16 DEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEV-VDADQHAADGCELVLVLGGDGTFLRAAEL 94 (307)
T ss_dssp GGGSHHHHHHHHHHHTTTCEEEEEC------------------------------------CCCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCHHHHCCCCCCC-CCCCCCCCCCCCEEEEECCCHHHHHHHHH
T ss_conf 89999999999999978998999843133146544674112203753210-24653444564589997687789999997
Q ss_pred HHHCCCEEEEEEE
Q ss_conf 9984988999983
Q gi|254780936|r 132 LQRKVKKVTIVST 144 (182)
Q Consensus 132 lr~~Gk~V~v~~~ 144 (182)
+...++.|..+..
T Consensus 95 ~~~~~~PilGIN~ 107 (307)
T 1u0t_A 95 ARNASIPVLGVNL 107 (307)
T ss_dssp HHHHTCCEEEEEC
T ss_pred HCCCCCEEEEECC
T ss_conf 4646983999758
No 41
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=49.40 E-value=13 Score=16.67 Aligned_cols=83 Identities=8% Similarity=0.007 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 6777579998897559569753458953788865435653299999999942-115889998386658999999998498
Q gi|254780936|r 59 QFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS-EGLEHLVIFSGDGCFTTLVAALQRKVK 137 (182)
Q Consensus 59 ~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a-~~~d~~iLvSGD~Df~pli~~lr~~Gk 137 (182)
...+...|.+++...|..+....... .+. ......+..-..+++... .+--.+|++++|.-...++..+++.|.
T Consensus 137 ~~~r~~g~~~a~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~l~~~~~~ai~~~~d~~a~g~~~~l~~~g~ 211 (288)
T 2qu7_A 137 TIGRKNGYNKAISEFDLNVNPSLIHY-SDQ----QLGTNAQIYSGYEATKTLLSKGIKGIVATNHLLLLGALQAIKESEK 211 (288)
T ss_dssp HHHHHHHHHHHHHHTTCCCCGGGEEE-CCS----SCSHHHHHHHHHHHHHHHHHTTCCEEEECSHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHEEE-ECC----CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 14545417999998699988231787-213----4423677899999999974100334556788989869999998699
Q ss_pred E----EEEEEEEC
Q ss_conf 8----99998315
Q gi|254780936|r 138 K----VTIVSTVL 146 (182)
Q Consensus 138 ~----V~v~~~~~ 146 (182)
+ |.|+++..
T Consensus 212 ~vp~dv~VigfD~ 224 (288)
T 2qu7_A 212 EIKKDVIIVGFDD 224 (288)
T ss_dssp CBTTTBEEEEESC
T ss_pred CCCCCCEEEEECC
T ss_conf 8898717999788
No 42
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=47.75 E-value=14 Score=16.51 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=23.7
Q ss_pred HHHHHHCCCCEEEEECCCH----HHHHHHHHHHHCCCEEEEE
Q ss_conf 9999421158899983866----5899999999849889999
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDG----CFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~----Df~pli~~lr~~Gk~V~v~ 142 (182)
.+++.+..-++++|++||- =...++..+++.|..|.++
T Consensus 80 ~i~~~a~~~~vv~l~~GDP~i~~~~~~l~~~~~~~g~~vevi 121 (268)
T 1vhv_A 80 RLIERAKSKSVVLLVPGDPMVATTHSAIKLEAERKGVKTRII 121 (268)
T ss_dssp HHHHHHTTSEEEEEESBCTTSSSHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 999996279868996699866663799999999779937993
No 43
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=47.25 E-value=14 Score=16.46 Aligned_cols=103 Identities=13% Similarity=0.022 Sum_probs=60.0
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--
Q ss_conf 999985179299999973068873146777579998897559569753458953788865435653299999999942--
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS-- 110 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a-- 110 (182)
+.+.+.+.+.-..++.... .........+...|.++++..|........ .. -...+.....+++...
T Consensus 178 a~~~L~~~G~r~i~~l~~~-~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~ 246 (355)
T 3e3m_A 178 MTNALLARGFRKIVFLGEK-DDDWTRGAARRAGFKRAMREAGLNPDQEIR--LG--------APPLSIEDGVAAAELILQ 246 (355)
T ss_dssp HHHHHHHTTCCSEEEEEES-SCTTSHHHHHHHHHHHHHHHTTSCSCCEEE--ES--------CSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEECC-CCCCCHHHHHHHHHHHHHHHCCCCCCHHCC--CC--------CCCHHHHHHHHHHHHHHH
T ss_conf 9999997699629999578-877740999987169999985999421002--24--------453023445666556875
Q ss_pred -CCCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEEC
Q ss_conf -1158899983866589999999984988----99998315
Q gi|254780936|r 111 -EGLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVL 146 (182)
Q Consensus 111 -~~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~ 146 (182)
..--++|++++|.-...+++.|++.|.+ |-|+++..
T Consensus 247 ~~~~~~ai~~~~d~~A~g~~~~l~~~g~~vP~disVig~D~ 287 (355)
T 3e3m_A 247 EYPDTDCIFCVSDMPAFGLLSRLKSIGVAVPEQVSVVGFGN 287 (355)
T ss_dssp HCTTCCEEEESSHHHHHHHHHHHHHHTCCTTTTCEEECSSC
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf 38999768856779999999999985999998439999778
No 44
>2rjo_A Twin-arginine translocation pathway signal protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: GAL; 2.05A {Burkholderia phytofirmans psjn}
Probab=46.62 E-value=14 Score=16.40 Aligned_cols=78 Identities=12% Similarity=0.007 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH----H-CCCCEEEEECCCHHHHH
Q ss_conf 87314677757999889755-956975345895378886543565329999999994----2-11588999838665899
Q gi|254780936|r 54 GDPEQQFSPLHPLLDWLHYN-GFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ----S-EGLEHLVIFSGDGCFTT 127 (182)
Q Consensus 54 ~~~~~~~~~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~----a-~~~d~~iLvSGD~Df~p 127 (182)
........+...|.+.+... +.++.... ..+.+..-+.+.++. . +.+ .+|++.+|.-...
T Consensus 146 ~~~~~~~~R~~g~~~~l~~~~~~~i~~~~-------------~~~~~~~~a~~~~~~~L~~~~p~i-~~I~~~nd~~a~g 211 (332)
T 2rjo_A 146 FSNVPAIERKAGLDAALKKFPGIQLLDFQ-------------VADWNSQKAFPIMQAWMTRFNSKI-KGVWAANDDMALG 211 (332)
T ss_dssp TTCHHHHHHHHHHHHHHHTCTTEEEEEEE-------------ECTTCHHHHHHHHHHHHHHHGGGE-EEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEE-------------ECCCCCHHHHHHHHHHHHHCCCCC-EEEEECCCHHHHH
T ss_conf 76447999999999999878997367666-------------223210689999999997377665-1999679789999
Q ss_pred HHHHHHHCCC--EEEEEEEE
Q ss_conf 9999998498--89999831
Q gi|254780936|r 128 LVAALQRKVK--KVTIVSTV 145 (182)
Q Consensus 128 li~~lr~~Gk--~V~v~~~~ 145 (182)
+++.+++.|+ ++.++++.
T Consensus 212 ~~~al~~~g~~~~i~vvG~D 231 (332)
T 2rjo_A 212 AIEALRAEGLAGQIPVTGMD 231 (332)
T ss_dssp HHHHHHHTTCBTTBCEECSB
T ss_pred HHHHHHHCCCCCCCEEEEEC
T ss_conf 99999976999992899989
No 45
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12}
Probab=45.64 E-value=15 Score=16.30 Aligned_cols=77 Identities=14% Similarity=0.093 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH---CCCCEEEEECCCHHHHHHHHHHHHC
Q ss_conf 6777579998897559569753458953788865435653299999999942---1158899983866589999999984
Q gi|254780936|r 59 QFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS---EGLEHLVIFSGDGCFTTLVAALQRK 135 (182)
Q Consensus 59 ~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a---~~~d~~iLvSGD~Df~pli~~lr~~ 135 (182)
...+...|.+++...|.+...... .....+..-+.+.+... ..--++|++++|.--..++..+++.
T Consensus 154 ~~~r~~gf~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~~l~~~ 222 (296)
T 3brq_A 154 SIERLAGYKDALAQHGIALNEKLI-----------ANGKWTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMKALHER 222 (296)
T ss_dssp HHHHHHHHHHHHHTTTCCCCGGGE-----------ECCCSSHHHHHHHHHHHHTC--CCSEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEE-----------ECCCCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHC
T ss_conf 577888999999985998761024-----------315545220789999998568887458856859999999999973
Q ss_pred CCE----EEEEEEEC
Q ss_conf 988----99998315
Q gi|254780936|r 136 VKK----VTIVSTVL 146 (182)
Q Consensus 136 Gk~----V~v~~~~~ 146 (182)
|.+ +.++++..
T Consensus 223 g~~iP~di~vig~D~ 237 (296)
T 3brq_A 223 GVAVPEQVSVIGFDD 237 (296)
T ss_dssp TCCTTTTCEEEEESC
T ss_pred CCCCCCCCEEECCCC
T ss_conf 998986420103487
No 46
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*
Probab=45.36 E-value=15 Score=16.28 Aligned_cols=31 Identities=6% Similarity=0.155 Sum_probs=16.9
Q ss_pred CEEEEECCCHH---HHHHHHHHHHCCCEEEEEEE
Q ss_conf 88999838665---89999999984988999983
Q gi|254780936|r 114 EHLVIFSGDGC---FTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 114 d~~iLvSGD~D---f~pli~~lr~~Gk~V~v~~~ 144 (182)
-+++|++.|.. ...++..++++|-+|++++.
T Consensus 282 ~vi~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 315 (375)
T 2zj3_A 282 PVIMIIMRDHTYAKCQNALQQVVARQGRPVVICD 315 (375)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 2899964712578899999999976996899987
No 47
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=44.06 E-value=13 Score=16.67 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=23.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 1158899983866589999999984988999983
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~ 144 (182)
+.+|.+|.+|+-.=+.+.+..+-+.|+.|.+.+.
T Consensus 59 ~~~DvVve~~~~~~~~~~~~~al~~g~~vv~~s~ 92 (253)
T 1j5p_A 59 SDVSTVVECASPEAVKEYSLQILKNPVNYIIIST 92 (253)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHTTSSSEEEECCG
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECC
T ss_conf 7998999858807999999999973997999836
No 48
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HUPR1; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=43.66 E-value=14 Score=16.45 Aligned_cols=86 Identities=13% Similarity=0.054 Sum_probs=49.7
Q ss_pred HHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 99889755956975345895378886543565329999999994211588999838665899999999849889999831
Q gi|254780936|r 66 LLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTV 145 (182)
Q Consensus 66 ~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~ 145 (182)
.++.+....+.++...+. . ...+|.+. . .-+.....---+|++||-+|....++.+++.|..=++.
T Consensus 36 al~~~~~~~~dlvl~D~~-----m---P~~~G~el--l-~~ir~~~~~~~vI~lt~~~~~~~~~~a~~~~Ga~dyl~--- 101 (139)
T 2jk1_A 36 AIAILEEEWVQVIICDQR-----M---PGRTGVDF--L-TEVRERWPETVRIIITGYTDSASMMAAINDAGIHQFLT--- 101 (139)
T ss_dssp HHHHHHHSCEEEEEEESC-----C---SSSCHHHH--H-HHHHHHCTTSEEEEEESCTTCHHHHHHHHHTTCCEEEE---
T ss_pred HHHHHHHCCCCEEEEECC-----C---CCCCHHHH--H-HHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEE---
T ss_conf 999997289999998556-----7---89855999--9-99998189995899989799899999999859980898---
Q ss_pred CCCCCCCHHHHHHHCCCCEEHHH
Q ss_conf 57765470899985211151899
Q gi|254780936|r 146 LSDPSMASDQLRRQADYFMDLAY 168 (182)
Q Consensus 146 ~~~~~~~S~~L~~~ad~fi~l~~ 168 (182)
++....+|.......+....
T Consensus 102 ---KP~~~~~L~~~v~~~~~~~~ 121 (139)
T 2jk1_A 102 ---KPWHPEQLLSSARNAARMFT 121 (139)
T ss_dssp ---SSCCHHHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHHHH
T ss_conf ---99999999999999999999
No 49
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=43.60 E-value=16 Score=16.11 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=24.7
Q ss_pred CCCH-HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 3866-5899999999849889999831577654708999852111518
Q gi|254780936|r 120 SGDG-CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 120 SGD~-Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
||.+ |-+.+++.+|+.|.+++.++-.. ...|.+.||..+.+
T Consensus 101 SG~T~etv~al~~ak~~g~~~i~itn~~------~S~la~~ad~~i~~ 142 (344)
T 3fj1_A 101 SGKSPDIVAMTRNAGRDGALCVALTNDA------ASPLAGVSAHTIDI 142 (344)
T ss_dssp SSCCHHHHHHHHHHHHTTCEEEEEESCT------TSHHHHTSSEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCC------CCCCCCCCCCCCCC
T ss_conf 8897599999999866599499984478------98600135644114
No 50
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=43.43 E-value=16 Score=16.09 Aligned_cols=51 Identities=18% Similarity=0.106 Sum_probs=31.3
Q ss_pred HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHH
Q ss_conf 999994211588999838665899999999849889999831577654708
Q gi|254780936|r 104 VDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASD 154 (182)
Q Consensus 104 iD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~ 154 (182)
.|+..+......++++-|--==++++..+.+.|++|+++............
T Consensus 162 ~d~~~l~~~p~~vvVIGgG~ig~E~A~~l~~~G~~Vtlie~~~~ll~~~d~ 212 (458)
T 1lvl_A 162 TEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDS 212 (458)
T ss_dssp HHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCH
T ss_pred HHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCH
T ss_conf 412040316985999997999999999999769979999857745544324
No 51
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=42.25 E-value=17 Score=15.98 Aligned_cols=78 Identities=17% Similarity=0.056 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH----CCCCEE-EEECCCHHHHHHHHHH
Q ss_conf 46777579998897559569753458953788865435653299999999942----115889-9983866589999999
Q gi|254780936|r 58 QQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS----EGLEHL-VIFSGDGCFTTLVAAL 132 (182)
Q Consensus 58 ~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a----~~~d~~-iLvSGD~Df~pli~~l 132 (182)
....+...|.+.+...|+........ .....|..-+...+... ++++.. |+.++|.--..++..+
T Consensus 147 ~~~~R~~g~~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~d~~a~g~~~al 216 (306)
T 8abp_A 147 TARRRTTGSMDALKAAGFPEKQIYQV----------PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 216 (306)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEE----------ECSSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEECC----------CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 79999999999999709986320012----------24451467999999998864888874443445439999999999
Q ss_pred HHCCC---EEEEEEEE
Q ss_conf 98498---89999831
Q gi|254780936|r 133 QRKVK---KVTIVSTV 145 (182)
Q Consensus 133 r~~Gk---~V~v~~~~ 145 (182)
++.|. .+.++++.
T Consensus 217 ~~~G~~~~~~~~vg~d 232 (306)
T 8abp_A 217 EGQGFKAADIIGIGIN 232 (306)
T ss_dssp HHTTCCGGGEEEEEES
T ss_pred HHCCCCCCCEEEEEEC
T ss_conf 9859999987999978
No 52
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, structural genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus JCSC1435}
Probab=42.11 E-value=17 Score=15.96 Aligned_cols=35 Identities=11% Similarity=0.034 Sum_probs=28.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEE
Q ss_conf 1158899983866589999999984988----9999831
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTV 145 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~ 145 (182)
....++|++++|.--..++..+++.|.+ |-|+++.
T Consensus 200 ~~~~~ai~~~~d~~A~g~~~al~~~g~~iP~Dv~vig~d 238 (305)
T 3huu_A 200 SHMPSVIITSDVMLNMQLLNVLYEYQLRIPEDIQTATFN 238 (305)
T ss_dssp -CCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 999765545664777779999998499988725998228
No 53
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus HB8} PDB: 2eq8_A* 2eq9_A*
Probab=42.06 E-value=17 Score=15.96 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=23.1
Q ss_pred HHHHHHCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 999942115-8899983866589999999984988999983
Q gi|254780936|r 105 DAFEQSEGL-EHLVIFSGDGCFTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 105 D~~~~a~~~-d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~ 144 (182)
+.+...+.+ ..++++-|.-==++++..+++.|++|+++.-
T Consensus 160 ~~~~~~~~~pk~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~ 200 (464)
T 2eq6_A 160 RALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEY 200 (464)
T ss_dssp HHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 98753322889199999789999999999976991999974
No 54
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=42.00 E-value=17 Score=15.95 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=23.8
Q ss_pred HHHHHHHHHH--CCCEEEEEEEECCCCCCCHHHHHHHCCCCEEHHH
Q ss_conf 8999999998--4988999983157765470899985211151899
Q gi|254780936|r 125 FTTLVAALQR--KVKKVTIVSTVLSDPSMASDQLRRQADYFMDLAY 168 (182)
Q Consensus 125 f~pli~~lr~--~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l~~ 168 (182)
|...+..+-. .|..+.+.. +....|-.+..+.|...-.++.
T Consensus 139 f~~~~~~~~~~~~~~~~~i~~---P~~~~tK~Ei~~~~~~~~~l~~ 181 (232)
T 2pg3_A 139 FVKALNQAIVLGIARDIRFET---PLMWLNKAETWALADYYQQLDT 181 (232)
T ss_dssp HHHHHHHHHHHHHTSCCEEEC---TTTTCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHCCCCCCEEEE---ECCCCCHHHHHHHHHHHCCCCC
T ss_conf 999999999855777726995---0225888999998543123585
No 55
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, JCSG, PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Probab=40.78 E-value=17 Score=15.83 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=31.8
Q ss_pred EEEEE--CCCH-HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 89998--3866-5899999999849889999831577654708999852111518
Q gi|254780936|r 115 HLVIF--SGDG-CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 115 ~~iLv--SGD~-Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
.+|.+ ||.+ |-+.+++.+|+.|.+++.++-.. ...|.+.||..+.+
T Consensus 103 lvI~iSqSG~T~e~~~a~~~ak~~g~~~i~iT~~~------~s~la~~~d~~i~~ 151 (342)
T 1j5x_A 103 LAFLFSRTGNTTEVLLANDVLKKRNHRTIGITIEE------ESRLAKESDLPLVF 151 (342)
T ss_dssp EEEEECSSSCCHHHHHHHHHHHHTTEEEEEEESCT------TSHHHHHSSEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCC------CCCCCCCCCEEEEE
T ss_conf 89998289996899999999987698088762355------53000024606873
No 56
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PSI, protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=40.70 E-value=17 Score=15.83 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=15.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 11588999838665899999999849889999
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
++||++|+=||=+-+..+++.. +.|.+|.|+
T Consensus 3 ~~yDViVIG~G~AGl~AAi~a~-~~G~~Vlli 33 (401)
T 2gqf_A 3 QYSENIIIGAGAAGLFCAAQLA-KLGKSVTVF 33 (401)
T ss_dssp EECSEEEECCSHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCCCEEEECCCHHHHHHHHHHH-HCCCCEEEE
T ss_conf 7896899896599999999999-789968999
No 57
>2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12}
Probab=40.65 E-value=18 Score=15.82 Aligned_cols=81 Identities=12% Similarity=0.041 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CC-CCEEEEECCCHHHHHHH
Q ss_conf 8873146777579998897559569753458953788865435653299999999942--11-58899983866589999
Q gi|254780936|r 53 VGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EG-LEHLVIFSGDGCFTTLV 129 (182)
Q Consensus 53 ~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~-~d~~iLvSGD~Df~pli 129 (182)
+........+...|.+++...|..+.... .++.+...+.++++.. .+ --++|++++|.--..++
T Consensus 147 ~~~~~~~~~r~~gf~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~ 213 (293)
T 2iks_A 147 LPELSVSFLREQGFRTAWKDDPREVHFLY-------------ANSYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVM 213 (293)
T ss_dssp CTTSHHHHHHHHHHHHHHTTCCCCEEEEE-------------ESSSCHHHHHHHHHHHTTTSCCCSEEEESSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEECC-------------CCCCHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHH
T ss_conf 55554057899999999997698601211-------------10110577889999876315787431148889999999
Q ss_pred HHHHHCCCE----EEEEEEEC
Q ss_conf 999984988----99998315
Q gi|254780936|r 130 AALQRKVKK----VTIVSTVL 146 (182)
Q Consensus 130 ~~lr~~Gk~----V~v~~~~~ 146 (182)
..+++.|.+ |.|+++..
T Consensus 214 ~~l~~~g~~vP~di~iig~d~ 234 (293)
T 2iks_A 214 DVTLRRDGKLPSDLAIATFGD 234 (293)
T ss_dssp HHHHHHHSSCCSSCEEEEESC
T ss_pred HHHHHCCCCCCCCEEEEEECC
T ss_conf 999983999998639999588
No 58
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=40.11 E-value=18 Score=15.77 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=25.8
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 9999421158899983866589999999984988999983
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~ 144 (182)
+....-.....++++-|.-==++++..++..|++|+++.-
T Consensus 168 ~~~~~~~~pk~v~ViGgG~ig~E~A~~l~~~g~~Vtlv~r 207 (467)
T 1zk7_A 168 EALASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLAR 207 (467)
T ss_dssp HHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 6423000798089989989999876887606978999985
No 59
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=39.12 E-value=19 Score=15.67 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=12.4
Q ss_pred HHHHHHHHHHCCCEEEEE
Q ss_conf 579998897559569753
Q gi|254780936|r 63 LHPLLDWLHYNGFQVVAK 80 (182)
Q Consensus 63 ~~~~~~~l~~~g~~v~~~ 80 (182)
...+...|..+||++...
T Consensus 39 ~~~~a~~L~~lGf~i~AT 56 (143)
T 2yvq_A 39 FLGVAEQLHNEGFKLFAT 56 (143)
T ss_dssp HHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEC
T ss_conf 999999999749678973
No 60
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1
Probab=38.75 E-value=19 Score=15.64 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHH-HHH--------CCC-CEEEEEC-----CC-HHHHHHHHHHHHCCCEEEEEEEECCCCCCC-HHHHHH
Q ss_conf 653299999999-942--------115-8899983-----86-658999999998498899998315776547-089998
Q gi|254780936|r 96 SSMDVELAVDAF-EQS--------EGL-EHLVIFS-----GD-GCFTTLVAALQRKVKKVTIVSTVLSDPSMA-SDQLRR 158 (182)
Q Consensus 96 k~~Dv~laiD~~-~~a--------~~~-d~~iLvS-----GD-~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~-S~~L~~ 158 (182)
+++.+.-+++.. +.. ++. ..+||+| ++ .+...++.++|..|.+|+++++..+..... -.+|+.
T Consensus 80 g~t~~~~al~~a~~~~~~~~~~~~~~~~kvvvl~tDG~~~~~~~~~~~~~~~l~~~gv~v~~Vgi~~~~~~~~~~~~L~~ 159 (194)
T 1mf7_A 80 GRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNT 159 (194)
T ss_dssp SCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHH
T ss_conf 98669999999999874143267677664999994788789804499999999977999999997887666346999999
Q ss_pred HCC
Q ss_conf 521
Q gi|254780936|r 159 QAD 161 (182)
Q Consensus 159 ~ad 161 (182)
.|.
T Consensus 160 iAs 162 (194)
T 1mf7_A 160 IAS 162 (194)
T ss_dssp HSC
T ss_pred HHC
T ss_conf 866
No 61
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=38.17 E-value=19 Score=15.58 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=28.6
Q ss_pred HHCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEE
Q ss_conf 421158899983866---58999999998498899998
Q gi|254780936|r 109 QSEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 109 ~a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~ 143 (182)
+++.=|.+|++|+.+ ..+.+++.++++|.+|+.++
T Consensus 110 ~~~~gDvli~iS~SG~S~nii~a~~~Ak~~g~~~i~lt 147 (199)
T 1x92_A 110 LGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALT 147 (199)
T ss_dssp HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 37899889998479999457899999998699699998
No 62
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=37.99 E-value=19 Score=15.56 Aligned_cols=33 Identities=15% Similarity=0.069 Sum_probs=24.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 588999838665899999999849889999831
Q gi|254780936|r 113 LEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTV 145 (182)
Q Consensus 113 ~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~ 145 (182)
-..++++-|.-==++++..+.+.|++|+++.-.
T Consensus 180 pk~vvVvGgG~ig~E~A~~l~~~G~~Vtlie~~ 212 (476)
T 3lad_A 180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAM 212 (476)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 981499788799999999999659979999868
No 63
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2ve2_A*
Probab=37.83 E-value=19 Score=15.55 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=19.6
Q ss_pred CCEEEEECCCHH---HHHHHHHHHHCCCEEEEEEE
Q ss_conf 588999838665---89999999984988999983
Q gi|254780936|r 113 LEHLVIFSGDGC---FTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 113 ~d~~iLvSGD~D---f~pli~~lr~~Gk~V~v~~~ 144 (182)
....+++-|-.= +..+...++..|.+|+++..
T Consensus 187 p~~~~viGgG~ig~e~a~~~~~~~~~G~~V~vi~r 221 (490)
T 1fec_A 187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYR 221 (490)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 76259982364342232322444367768999985
No 64
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=36.68 E-value=20 Score=15.43 Aligned_cols=131 Identities=13% Similarity=0.123 Sum_probs=57.9
Q ss_pred EEEEHHHHHHHHHHCCCCC------CHHHHHHHHHHCCEEE-EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 9980789999998508767------9899999985179299-99997306887314677757999889755956975345
Q gi|254780936|r 10 LFIDGANLYASSKALGFDI------DYRKLLKAFRSRAIVI-RAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVA 82 (182)
Q Consensus 10 IfID~~Nl~~~~~~~~~~~------d~~~L~~~l~~~~~l~-~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~ 82 (182)
||+=|.--...++++|... +-..|++.+.....-. +.-+..+.... ....+.|.+.|+.|...++
T Consensus 117 i~aVG~~Ta~~L~~~G~~~~~~~~~~ae~L~~~i~~~~~~~~~iL~~~g~~~~--------~~L~~~L~~~G~~v~~~~v 188 (286)
T 1jr2_A 117 VYVVGNATASLVSKIGLDTEGETCGNAEKLAEYICSRESSALPLLFPCGNLKR--------EILPKALKDKGIAMESITV 188 (286)
T ss_dssp EEECSHHHHHHHHHTTCCCSCCSCSSHHHHHHHHHTSCCCSSCEEEEESCGGG--------CCHHHHHHTTTCCEEEEEC
T ss_pred EEEECHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCH--------HHHHHHHHHCCCEEEEEEE
T ss_conf 99987799999998699100678889999999998752689759986056650--------7899999847985569988
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCH--HHHHHHHHHHHC-CCEEEEEEEECCCCCCCHHHHHHH
Q ss_conf 89537888654356532999999999421158899983866--589999999984-988999983157765470899985
Q gi|254780936|r 83 KEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDG--CFTTLVAALQRK-VKKVTIVSTVLSDPSMASDQLRRQ 159 (182)
Q Consensus 83 ~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~--Df~pli~~lr~~-Gk~V~v~~~~~~~~~~~S~~L~~~ 159 (182)
..... .........+++.....+|.+++.|+-+ -|..++...... -..+.++++ ...|+..|++.
T Consensus 189 Y~t~~--------~~~~~~~~~~~l~~~~~~d~VvFtSps~v~~f~~~l~~~~~~~~~~~~i~aI----G~~Ta~~l~~~ 256 (286)
T 1jr2_A 189 YQTVA--------HPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAI----GPTTARALAAQ 256 (286)
T ss_dssp EEEEE--------CTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHHGGGGGGSEEEES----SHHHHHHHHHT
T ss_pred EEEEC--------CCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEE----CHHHHHHHHHC
T ss_conf 72214--------8742188999987326872999939899999999998730324368189998----99999999986
Q ss_pred C
Q ss_conf 2
Q gi|254780936|r 160 A 160 (182)
Q Consensus 160 a 160 (182)
-
T Consensus 257 G 257 (286)
T 1jr2_A 257 G 257 (286)
T ss_dssp T
T ss_pred C
T ss_conf 9
No 65
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=36.26 E-value=21 Score=15.39 Aligned_cols=93 Identities=10% Similarity=0.049 Sum_probs=50.9
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--
Q ss_conf 999985179299999973068873146777579998897559569753458953788865435653299999999942--
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS-- 110 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a-- 110 (182)
+.+++.+.+.-.. .|............+...|.++++..|..+....+. ....+..-+.+++...
T Consensus 118 a~~~L~~~G~r~i--~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~i~-----------~~~~~~~~~~~~~~~~l~ 184 (289)
T 3g85_A 118 ASLLFAKKRYKSA--AAILTESLNDAMDNRNKGFIETCHKNGIKISENHII-----------AAENSIHGGVDAAKKLMK 184 (289)
T ss_dssp HHHHHHHTTCCBC--EEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEE-----------ECCSSHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCE--ECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE-----------ECCCCCHHHHHHHHHHHH
T ss_conf 9999997499734--114567678389999860036788729986631474-----------044321357898887763
Q ss_pred C-CCCEEEEECCCHHHHHHHHHHHHCCCE
Q ss_conf 1-158899983866589999999984988
Q gi|254780936|r 111 E-GLEHLVIFSGDGCFTTLVAALQRKVKK 138 (182)
Q Consensus 111 ~-~~d~~iLvSGD~Df~pli~~lr~~Gk~ 138 (182)
. .--++|++++|.=...+++.+++.|.+
T Consensus 185 ~~~~~~aii~~~d~~a~g~~~al~~~g~~ 213 (289)
T 3g85_A 185 LKNTPKALFCNSDSIALGVISVLNKRQIS 213 (289)
T ss_dssp SSSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 17886543317849999999999987986
No 66
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=36.19 E-value=21 Score=15.39 Aligned_cols=49 Identities=16% Similarity=0.147 Sum_probs=23.8
Q ss_pred HHCCCCEEEEECCC--HH-----HHHHHHHHH-HCCCEEEEEEEECCCCCCCHHHHHHHCCCCE
Q ss_conf 42115889998386--65-----899999999-8498899998315776547089998521115
Q gi|254780936|r 109 QSEGLEHLVIFSGD--GC-----FTTLVAALQ-RKVKKVTIVSTVLSDPSMASDQLRRQADYFM 164 (182)
Q Consensus 109 ~a~~~d~~iLvSGD--~D-----f~pli~~lr-~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi 164 (182)
.+..+++ |+||. .| +.++++-+. ..|.... -+..+..-.++++.|.+++
T Consensus 98 ~a~~~~~--i~tGh~~dD~~e~~~~~~~~~~~~~~~~~~~-----rPL~~~~k~ei~~~a~~~~ 154 (203)
T 3k32_A 98 LADEYSI--LADGTRRDDRVPKLSYSEIQSLEMRKNIQYI-----TPLMGFGYKTLRHLASEFF 154 (203)
T ss_dssp HTTTCSE--EECCCCTTCCSSCCCHHHHHHHHHHHTCEEE-----CGGGGCCHHHHHHHHHHHE
T ss_pred HHCCCCE--EEECCCCHHHHCCCHHHHHCCCCHHHHHHCC-----CCCCCCCHHHHHHHHHHCC
T ss_conf 9669999--9972880777541208771452022100002-----5335989999999999708
No 67
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=36.12 E-value=13 Score=16.58 Aligned_cols=33 Identities=9% Similarity=0.012 Sum_probs=21.0
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 211588999838665899999999849889999
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
...+|.++++|+-.--.|.+..+-+.|+.|+..
T Consensus 56 ~~~~Dvvii~tp~~~~~~~~~~~l~~G~~VV~~ 88 (320)
T 1f06_A 56 ADDVDVLFLCMGSATDIPEQAPKFAQFACTVDT 88 (320)
T ss_dssp TTTCSEEEECSCTTTHHHHHHHHHTTTSEEECC
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEC
T ss_conf 057999998789716899999999869999982
No 68
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium LT2}
Probab=35.13 E-value=21 Score=15.28 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEE
Q ss_conf 77579998897559569753458953788865435653299999999942115889998386658999999998498899
Q gi|254780936|r 61 SPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVT 140 (182)
Q Consensus 61 ~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~ 140 (182)
...+...++|.+.|+++..-+.....- ..++... .+.-+...+.|.+|.+-|||-|..+++.....++.+.
T Consensus 21 ~~~~~i~~~l~~~g~~v~~~~~~~~~~------~~~~~~~---~~~~~~~~~~Dlvi~iGGDGT~L~a~~~~~~~~~Pil 91 (292)
T 2an1_A 21 TTHEMLYRWLCDQGYEVIVEQQIAHEL------QLKNVPT---GTLAEIGQQADLAVVVGGDGNMLGAARTLARYDINVI 91 (292)
T ss_dssp CHHHHHHHHHHHTTCEEEEEHHHHHHT------TCSSCCE---ECHHHHHHHCSEEEECSCHHHHHHHHHHHTTSSCEEE
T ss_pred HHHHHHHHHHHHCCCEEEECHHHHHHC------CCCCCCC---CCHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCCCEE
T ss_conf 999999999997889999968888664------8777775---5444505577789999268579999998376898389
Q ss_pred EEEEECCCCC
Q ss_conf 9983157765
Q gi|254780936|r 141 IVSTVLSDPS 150 (182)
Q Consensus 141 v~~~~~~~~~ 150 (182)
.+ .-|.-+
T Consensus 92 GI--n~G~lG 99 (292)
T 2an1_A 92 GI--NRGNLG 99 (292)
T ss_dssp EB--CSSSCC
T ss_pred EE--ECCCCE
T ss_conf 87--658842
No 69
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=34.76 E-value=22 Score=15.24 Aligned_cols=77 Identities=16% Similarity=0.058 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH----HCCCCEEEEECCCHHHHHHHH
Q ss_conf 7314677757999889755956975345895378886543565329999999994----211588999838665899999
Q gi|254780936|r 55 DPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ----SEGLEHLVIFSGDGCFTTLVA 130 (182)
Q Consensus 55 ~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~----a~~~d~~iLvSGD~Df~pli~ 130 (182)
.......+...|.+.+...+..+.... ....|..-+...+.. -+.++ +|+..+|.--..+++
T Consensus 134 ~~~~~~~R~~g~~~~l~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~i~-~i~~~~d~~a~ga~~ 199 (313)
T 2h3h_A 134 TAMNSLQRIQGFKDAIKDSEIEIVDIL-------------NDEEDGARAVSLAEAALNAHPDLD-AFFGVYAYNGPAQAL 199 (313)
T ss_dssp SCHHHHHHHHHHHHHHTTSSCEEEEEE-------------ECSSCHHHHHHHHHHHHHHCTTCC-EEEECSTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCC-------------CCCCCHHHHHHHHHHHHHHCCCCC-EEEECCCHHHHHHHH
T ss_conf 876699999999998613686432232-------------335547678999999997398984-899778468999999
Q ss_pred HHHHCCC--EEEEEEEE
Q ss_conf 9998498--89999831
Q gi|254780936|r 131 ALQRKVK--KVTIVSTV 145 (182)
Q Consensus 131 ~lr~~Gk--~V~v~~~~ 145 (182)
.+++.|+ .+.++++.
T Consensus 200 Al~~~g~~~~i~i~g~d 216 (313)
T 2h3h_A 200 VVKNAGKVGKVKIVCFD 216 (313)
T ss_dssp HHHHTTCTTTSEEEEEC
T ss_pred HHHHCCCCCCCCEEEEC
T ss_conf 99977999897479957
No 70
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis V583} SCOP: d.58.18.13
Probab=34.55 E-value=22 Score=15.22 Aligned_cols=29 Identities=7% Similarity=0.217 Sum_probs=24.2
Q ss_pred EEEEECCCH-HHHHHHHHHHHCCCEEEEEE
Q ss_conf 899983866-58999999998498899998
Q gi|254780936|r 115 HLVIFSGDG-CFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 115 ~~iLvSGD~-Df~pli~~lr~~Gk~V~v~~ 143 (182)
-++-++|+. +.-.++..|+++|..|++++
T Consensus 69 l~v~l~G~~~~~~~ai~~L~~~~v~vEvi~ 98 (100)
T 2qsw_A 69 LYIQLLGEEQNILAAIEGLRKLRVETEVIG 98 (100)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEESS
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 999995899999999999998698899906
No 71
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.15A {Colwellia psychrerythraea 34H}
Probab=34.07 E-value=22 Score=15.17 Aligned_cols=36 Identities=17% Similarity=0.061 Sum_probs=27.2
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 211588999838665899999999849889999831
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTV 145 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~ 145 (182)
......++++-|---=+.....+...|++|+++.-.
T Consensus 171 ~~~pk~vvIIGgG~ig~E~A~~l~~~G~~Vtli~r~ 206 (492)
T 3ic9_A 171 NDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRS 206 (492)
T ss_dssp SSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCT
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEEE
T ss_conf 436975999736643016779898569778998740
No 72
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=34.04 E-value=22 Score=15.17 Aligned_cols=28 Identities=14% Similarity=-0.068 Sum_probs=11.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 8999838665899999999849889999
Q gi|254780936|r 115 HLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 115 ~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
-+.|.+.+-...++-..++.-|.+|+.+
T Consensus 294 ~~nilg~~~~~~~~~~~~~~~~~~v~~y 321 (365)
T 2z04_A 294 MVNILGKSYEEIPLKEILSVEGAKLYWY 321 (365)
T ss_dssp EEEEESCCGGGSCHHHHTTSTTEEEEEC
T ss_pred EEEEECCCCCCCHHHHHHCCCCCEEEEC
T ss_conf 8999566767108999747999889872
No 73
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=33.59 E-value=23 Score=15.12 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=5.3
Q ss_pred HHHHHHCCCEEEEE
Q ss_conf 98897559569753
Q gi|254780936|r 67 LDWLHYNGFQVVAK 80 (182)
Q Consensus 67 ~~~l~~~g~~v~~~ 80 (182)
.+.|...|..|...
T Consensus 172 ~~~L~~~G~~V~~v 185 (286)
T 3d8t_A 172 ENALAERGYRVLPL 185 (286)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHHCCCEEEEE
T ss_conf 99999789987899
No 74
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=33.17 E-value=23 Score=15.08 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=43.9
Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCE--EEE
Q ss_conf 799988975595697534589537888654356532999999999421158899983866589999999984988--999
Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKK--VTI 141 (182)
Q Consensus 64 ~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~--V~v 141 (182)
......|...||+|.... |..-+++.+. ...+|.++|= |.|=..+++.+|+.+.. |++
T Consensus 32 ~~l~~~L~~~G~~v~~a~-----------------~g~~al~~l~-~~~~DlviLp--~~~G~ell~~ir~~~~~~piii 91 (137)
T 2pln_A 32 GEIEKGLNVKGFMADVTE-----------------SLEDGEYLMD-IRNYDLVMVS--DKNALSFVSRIKEKHSSIVVLV 91 (137)
T ss_dssp HHHHHHHHHTTCEEEEES-----------------CHHHHHHHHH-HSCCSEEEEC--STTHHHHHHHHHHHSTTSEEEE
T ss_pred HHHHHHHHHCCCEEEEEC-----------------CHHHHHHHHH-CCCCCEEEEE--CCCCHHHHHHHHHCCCCCCEEE
T ss_conf 999999998899999989-----------------9999999997-2899999982--7876379999996288997599
Q ss_pred EEEECCCCCCCHHHHHHHCCCCE
Q ss_conf 98315776547089998521115
Q gi|254780936|r 142 VSTVLSDPSMASDQLRRQADYFM 164 (182)
Q Consensus 142 ~~~~~~~~~~~S~~L~~~ad~fi 164 (182)
++ ..+.....-..|..-||.|+
T Consensus 92 lT-~~~~~~~~~~al~~Gaddyl 113 (137)
T 2pln_A 92 SS-DNPTSEEEVHAFEQGADDYI 113 (137)
T ss_dssp EE-SSCCHHHHHHHHHTTCSEEE
T ss_pred EE-CCCCHHHHHHHHHCCCCEEE
T ss_conf 96-48999999999986998899
No 75
>3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396}
Probab=32.34 E-value=24 Score=15.00 Aligned_cols=85 Identities=8% Similarity=0.027 Sum_probs=49.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH----HHCCCCEEEEECCC
Q ss_conf 9730688731467775799988975595-697534589537888654356532999999999----42115889998386
Q gi|254780936|r 48 YYTTVVGDPEQQFSPLHPLLDWLHYNGF-QVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE----QSEGLEHLVIFSGD 122 (182)
Q Consensus 48 ~y~~~~~~~~~~~~~~~~~~~~l~~~g~-~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~----~a~~~d~~iLvSGD 122 (182)
.+...+........+...|.+.+...+- ++... ...+.|..-+.+.+. ..+.+| +|++++|
T Consensus 131 ~~l~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~-ai~~~~d 196 (276)
T 3ksm_A 131 ALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAA-------------PYAGDDRGAARSEMLRLLKETPTID-GLFTPNE 196 (276)
T ss_dssp EECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEEC-------------CBCCSSHHHHHHHHHHHHHHCSCCC-EEECCSH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEE-------------EEEHHHHHHHHHHHHHHHHCCCCCE-EEECCCC
T ss_conf 9814777776088999999999997798643035-------------5411234789999887651289850-4423782
Q ss_pred HHHHHHHHHHHHCCC--EEEEEEEEC
Q ss_conf 658999999998498--899998315
Q gi|254780936|r 123 GCFTTLVAALQRKVK--KVTIVSTVL 146 (182)
Q Consensus 123 ~Df~pli~~lr~~Gk--~V~v~~~~~ 146 (182)
.--.-++..+++.|. +|.++++..
T Consensus 197 ~~a~g~~~a~~~~g~~~~i~vvg~d~ 222 (276)
T 3ksm_A 197 STTIGALVAIRQSGMSKQFGFIGFDQ 222 (276)
T ss_dssp HHHHHHHHHHHHTTCTTSSEEEEESC
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 99999999999769999818998789
No 76
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=31.60 E-value=24 Score=14.92 Aligned_cols=52 Identities=8% Similarity=0.024 Sum_probs=32.3
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCC
Q ss_conf 2115889998386658999999998498899998315776547089998521
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQAD 161 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad 161 (182)
...+|.+|.+++-.=..+.+..+-+.|+.|.+.+..--.....-.+|.+.|.
T Consensus 48 ~~~~DvVie~a~~~a~~e~a~~~L~~G~~vvv~S~galad~~~~~~L~~~A~ 99 (236)
T 2dc1_A 48 QREMDVAVEAASQQAVKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCR 99 (236)
T ss_dssp TSCCSEEEECSCHHHHHHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHH
T ss_conf 3888789990697404799999997399799962216317349999999998
No 77
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=31.42 E-value=24 Score=15.01 Aligned_cols=85 Identities=9% Similarity=0.148 Sum_probs=48.9
Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 79998897559569753458953788865435653299999999942115889998386658999999998498899998
Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 64 ~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
......|.+.||.+...+.....+. ....+.-.+ ..+.-..+|.++++..-..-.++++.+.+.|.++..+.
T Consensus 30 ~~v~~~L~~~g~~~~~v~p~~~~~~--i~g~~~~~s------l~dip~~vDlv~i~vp~~~v~~~v~e~~~~g~~~v~~q 101 (140)
T 1iuk_A 30 HYVPRYLREQGYRVLPVNPRFQGEE--LFGEEAVAS------LLDLKEPVDILDVFRPPSALMDHLPEVLALRPGLVWLQ 101 (140)
T ss_dssp HHHHHHHHHTTCEEEEECGGGTTSE--ETTEECBSS------GGGCCSCCSEEEECSCHHHHTTTHHHHHHHCCSCEEEC
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCE--ECCEEECCC------HHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9999999978993388787776535--568272065------67648987389998088999999999996298989989
Q ss_pred EECCCCCCCHHHHHHHCC
Q ss_conf 315776547089998521
Q gi|254780936|r 144 TVLSDPSMASDQLRRQAD 161 (182)
Q Consensus 144 ~~~~~~~~~S~~L~~~ad 161 (182)
.+..+.++.+.|.
T Consensus 102 -----~G~~~~e~~~~a~ 114 (140)
T 1iuk_A 102 -----SGIRHPEFEKALK 114 (140)
T ss_dssp -----TTCCCHHHHHHHH
T ss_pred -----CCCCCHHHHHHHH
T ss_conf -----8968999999999
No 78
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken structural genomics/proteomics initiative, RSGI; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1
Probab=31.23 E-value=25 Score=14.88 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=23.2
Q ss_pred HHHHHCCCCEEEEECCCHH----HHHHHHHHHHCCCEEEEE
Q ss_conf 9994211588999838665----899999999849889999
Q gi|254780936|r 106 AFEQSEGLEHLVIFSGDGC----FTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 106 ~~~~a~~~d~~iLvSGD~D----f~pli~~lr~~Gk~V~v~ 142 (182)
+++.+..=++++|++||-= +..++.++++.|..|.++
T Consensus 77 i~~~a~~~~Vv~L~~GDP~i~~t~~~l~~~~~~~gi~vevI 117 (294)
T 1wde_A 77 IVSRALDAVVAVVTAGDPMVATTHSSLAAEALEAGVAVRYI 117 (294)
T ss_dssp HTCCSSCCEEEEEESBCTTSSSSHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 99985579879996799987671899999999889978997
No 79
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=31.14 E-value=5.6 Score=18.92 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=34.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHH---HCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEHHHHHHHH
Q ss_conf 11588999838665899999999---8498899998315776547089998521115189978762
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQ---RKVKKVTIVSTVLSDPSMASDQLRRQADYFMDLAYLKNEI 173 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr---~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l~~l~~~i 173 (182)
...|++.|+|-|+.=..++..++ ..|.-|.+++... .+ ++.+.|+.+|++.-.++.+
T Consensus 76 t~tDRVLlFs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~Id~kl~kpLv 135 (170)
T 3jx9_A 76 HAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITLGD----VT--ETLERSIAPLALKFDKGLL 135 (170)
T ss_dssp CTTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEESSC----CC--TTGGGSSSCEECCCCSCSE
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCC----CC--CCHHHHHEEEECCCCCCCC
T ss_conf 766869997599534899999998515886599963677----78--8535630100215688877
No 80
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis W83}
Probab=30.78 E-value=25 Score=14.83 Aligned_cols=32 Identities=9% Similarity=-0.012 Sum_probs=19.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 11588999838665899999999849889999
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
.++|.++++|+..--.+.+..+-+.|+.|+..
T Consensus 64 ~~~D~vi~~t~~~~~~~~~~~~l~~g~~vv~~ 95 (304)
T 3bio_A 64 ESVDVALVCSPSREVERTALEILKKGICTADS 95 (304)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 58987999079544799999999838977983
No 81
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=30.68 E-value=25 Score=14.82 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHH----H-----CCC-CEEEEEC-C---C-HHHHHHHHHHHHCCCEEEEEEEECCCCCC------CHH
Q ss_conf 65329999999994----2-----115-8899983-8---6-65899999999849889999831577654------708
Q gi|254780936|r 96 SSMDVELAVDAFEQ----S-----EGL-EHLVIFS-G---D-GCFTTLVAALQRKVKKVTIVSTVLSDPSM------ASD 154 (182)
Q Consensus 96 k~~Dv~laiD~~~~----a-----~~~-d~~iLvS-G---D-~Df~pli~~lr~~Gk~V~v~~~~~~~~~~------~S~ 154 (182)
+++.+..|++.... . ++. ..+||+| | | .+...++..+|+.|.+|..+++....... ...
T Consensus 98 ~~t~~~~aL~~~~~~~~~~~~g~R~~~~kvlillTDG~~~d~~~~~~~a~~lk~~gi~v~~Igvg~~~~~~~~~~~~~~~ 177 (223)
T 2b2x_A 98 RQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNYRLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVE 177 (223)
T ss_dssp SSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGGGHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHH
T ss_conf 33221777888888750333588878725799982698788312999999998759989999984666644324423699
Q ss_pred HHHHHCC
Q ss_conf 9998521
Q gi|254780936|r 155 QLRRQAD 161 (182)
Q Consensus 155 ~L~~~ad 161 (182)
+|+..|.
T Consensus 178 eL~~IAs 184 (223)
T 2b2x_A 178 EIKSIAS 184 (223)
T ss_dssp HHHTTSC
T ss_pred HHHHHHC
T ss_conf 9999866
No 82
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=30.53 E-value=25 Score=14.81 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=24.9
Q ss_pred CCCCEEEEECC-------------------CHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 11588999838-------------------66589999999984988999983
Q gi|254780936|r 111 EGLEHLVIFSG-------------------DGCFTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 111 ~~~d~~iLvSG-------------------D~Df~pli~~lr~~Gk~V~v~~~ 144 (182)
..||.+||--| +.+...+++..-+.||.|..++.
T Consensus 89 ~dyD~lviPGG~g~~~~L~~~~~~~~~~~~~~~v~~~i~~~~~~~K~iaaIC~ 141 (232)
T 1vhq_A 89 AELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCI 141 (232)
T ss_dssp GGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETT
T ss_pred HHCCEEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECH
T ss_conf 12888997899542888654002464333399999999999986997999886
No 83
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidoreductase; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=30.41 E-value=26 Score=14.80 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=8.9
Q ss_pred CCEEEEEEEHH
Q ss_conf 87189998078
Q gi|254780936|r 5 REKIALFIDGA 15 (182)
Q Consensus 5 ~~rvaIfID~~ 15 (182)
.+|+.+.|=|+
T Consensus 8 ~KkIllgiTGS 18 (194)
T 1p3y_1 8 DKKLLIGICGS 18 (194)
T ss_dssp GCEEEEEECSC
T ss_pred CCEEEEEEECH
T ss_conf 99699999488
No 84
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=30.31 E-value=26 Score=14.79 Aligned_cols=42 Identities=24% Similarity=0.128 Sum_probs=23.2
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 999942115889998386658999999998498899998315
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVL 146 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~ 146 (182)
+++.+...-..++++-|--==++++..+.+.|++|.++....
T Consensus 175 ~~~~~~~~pk~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 216 (478)
T 1v59_A 175 GALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP 216 (478)
T ss_dssp HHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred HHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 653636489879999978999999999997599799985156
No 85
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=29.96 E-value=26 Score=14.75 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=27.2
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 99994211588999838665899999999849889999831
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTV 145 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~ 145 (182)
+++.+...-..++++-|--==++++..+.+.|++|+++.-.
T Consensus 158 ~~~~l~~~pk~v~ViGgG~ig~E~A~~l~~~G~~Vtli~r~ 198 (463)
T 2r9z_A 158 GFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALE 198 (463)
T ss_dssp HHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred HHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 85234427998999997899999999999779999999850
No 86
>3fkj_A Putative phosphosugar isomerases; NP_459564.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=29.96 E-value=26 Score=14.75 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=8.7
Q ss_pred HHHHHHHHCCCEEEEEE
Q ss_conf 99999998498899998
Q gi|254780936|r 127 TLVAALQRKVKKVTIVS 143 (182)
Q Consensus 127 pli~~lr~~Gk~V~v~~ 143 (182)
.+++.++++|.++++++
T Consensus 279 ~~~~~i~~~~~~v~~I~ 295 (347)
T 3fkj_A 279 RAIRFIERYQGKLQLID 295 (347)
T ss_dssp HHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHCCCEEEEEE
T ss_conf 99999998399699996
No 87
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar binding protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=29.52 E-value=26 Score=14.70 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=31.1
Q ss_pred HHHHHHHHCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEE
Q ss_conf 999999421158899983866---58999999998498899998
Q gi|254780936|r 103 AVDAFEQSEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 103 aiD~~~~a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~ 143 (182)
+-.+-.+++.=|.+|++|+.+ ..+.+++.+|++|.+|+.++
T Consensus 100 ~~ql~~~~~~gDvli~iS~SGns~nvi~a~~~Ak~~g~~~i~lt 143 (196)
T 2yva_A 100 AKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALT 143 (196)
T ss_dssp HHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 99999735789779998489997439999999998699899994
No 88
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=29.32 E-value=22 Score=15.24 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=19.3
Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 899999999849889999831577654708999852111518
Q gi|254780936|r 125 FTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 125 f~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
+..+++.+++.|+.|++++ + -.++.+.||..+.+
T Consensus 102 l~~~l~~l~~~~~tvivvs----H----d~~~~~~aD~ii~i 135 (148)
T 1f2t_B 102 LITIMERYLKKIPQVILVS----H----DEELKDAADHVIRI 135 (148)
T ss_dssp HHHHHHHTGGGSSEEEEEE----S----CGGGGGGCSEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEE----E----CHHHHHHCCEEEEE
T ss_conf 9999999995699899995----1----08999959999999
No 89
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotransferase; 16423107, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Salmonella typhimurium LT2}
Probab=28.37 E-value=28 Score=14.58 Aligned_cols=47 Identities=11% Similarity=0.182 Sum_probs=32.5
Q ss_pred CEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 8899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 114 EHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 114 d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
|.+|.+|--| +-+.+++.+|+.|.+++.++-.. -..|.+.||..+.+
T Consensus 104 ~lvi~iS~SG~t~e~~~a~~~a~~~g~~~i~it~~~------~s~l~~~~d~~i~~ 153 (355)
T 2a3n_A 104 SVVITLSKSGDTKESVAIAEWCKAQGIRVVAITKNA------DSPLAQAATWHIPM 153 (355)
T ss_dssp CEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCT------TSHHHHTCSEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECC------CCEEEECCCCCCCC
T ss_conf 889998189998799999999997598499985126------72033013321012
No 90
>3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=28.36 E-value=28 Score=14.57 Aligned_cols=82 Identities=11% Similarity=0.104 Sum_probs=47.3
Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 79998897559569753458953788865435653299999999942115889998386658999999998498899998
Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 64 ~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
......|...||++.. +....+.-.....=++.| .-..+|.++++..-.-..++++.+.++|.+...+
T Consensus 21 ~~v~~~L~~~G~~V~p--VnP~~~~I~G~~~~~sl~---------~p~~iD~v~i~~p~~~~~~~v~e~~~~g~k~vw~- 88 (122)
T 3ff4_A 21 YLAAERLKSHGHEFIP--VGRKKGEVLGKTIINERP---------VIEGVDTVTLYINPQNQLSEYNYILSLKPKRVIF- 88 (122)
T ss_dssp HHHHHHHHHHTCCEEE--ESSSCSEETTEECBCSCC---------CCTTCCEEEECSCHHHHGGGHHHHHHHCCSEEEE-
T ss_pred HHHHHHHHHCCCEEEE--ECCCCCCCCEEEEEECCC---------CCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEE-
T ss_conf 9999999978998999--888776100058997455---------6788757999958899899999998539999999-
Q ss_pred EECCCCCCCHHHHHHHCC
Q ss_conf 315776547089998521
Q gi|254780936|r 144 TVLSDPSMASDQLRRQAD 161 (182)
Q Consensus 144 ~~~~~~~~~S~~L~~~ad 161 (182)
. .+..+.++.+.|.
T Consensus 89 -q---~G~~~e~~~~~a~ 102 (122)
T 3ff4_A 89 -N---PGTENEELEEILS 102 (122)
T ss_dssp -C---TTCCCHHHHHHHH
T ss_pred -E---CCCCCHHHHHHHH
T ss_conf -3---6987999999999
No 91
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, hydrolase, inner membrane, membrane; 2.10A {Escherichia coli K12} SCOP: d.58.18.13
Probab=28.23 E-value=28 Score=14.56 Aligned_cols=31 Identities=26% Similarity=0.228 Sum_probs=25.1
Q ss_pred EEEEECCCHH-HHHHHHHHHHCCCEEEEEEEE
Q ss_conf 8999838665-899999999849889999831
Q gi|254780936|r 115 HLVIFSGDGC-FTTLVAALQRKVKKVTIVSTV 145 (182)
Q Consensus 115 ~~iLvSGD~D-f~pli~~lr~~Gk~V~v~~~~ 145 (182)
-++-++||.+ .-.+++.|+++|..|++++-.
T Consensus 67 L~v~l~G~~~~~~~ai~~L~~~~v~vEvigyV 98 (106)
T 3dhx_A 67 MLTEMHGTQQDTQAAIAWLQEHHVKVEVLGYV 98 (106)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 99995599899999999999869859993041
No 92
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=27.99 E-value=28 Score=14.53 Aligned_cols=20 Identities=15% Similarity=-0.006 Sum_probs=9.2
Q ss_pred CEEEEECCC----HHHHHHHHHHH
Q ss_conf 889998386----65899999999
Q gi|254780936|r 114 EHLVIFSGD----GCFTTLVAALQ 133 (182)
Q Consensus 114 d~~iLvSGD----~Df~pli~~lr 133 (182)
..+.|.||. .|++..+.++.
T Consensus 241 ~~~ni~~~~~~si~el~~~i~~~~ 264 (333)
T 2q1w_A 241 GAYHFSSGTDVAIKELYDAVVEAM 264 (333)
T ss_dssp EEEECSCSCCEEHHHHHHHHHHHT
T ss_pred CCEEECCCCCEEHHHHHHHHHHHH
T ss_conf 961856999764999999999997
No 93
>2bde_A Cytosolic IMP-GMP specific 5'-nucleotidase; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.90A {Legionella pneumophila} SCOP: c.108.1.23
Probab=27.98 E-value=28 Score=14.53 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHH--------HCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 329999999994--------2115889998386658999999998498899998
Q gi|254780936|r 98 MDVELAVDAFEQ--------SEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 98 ~Dv~laiD~~~~--------a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
-||.=|+|.+.. +.+.+.+|.- |.+..+.+++||+.||++.+++
T Consensus 158 ~dv~~av~~~H~~G~l~~~v~~dp~kYi~k--~~~l~~~L~~Lr~~GKklFLiT 209 (470)
T 2bde_A 158 QDVQYCVDKVHSDGTLKNIIIKNLKKYVIR--EKEVVEGLKHFIRYGKKIFILT 209 (470)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTCTTTSEEC--CHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHCHHHHHCC--CHHHHHHHHHHHHCCCEEEEEC
T ss_conf 999999986436772268876397976227--8657999999997298699951
No 94
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Probab=27.88 E-value=18 Score=15.68 Aligned_cols=77 Identities=8% Similarity=0.020 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCE-EHHHHHHHHCCC
Q ss_conf 2999999999421-15889998386658999999998498899998315776547089998521115-189978762258
Q gi|254780936|r 99 DVELAVDAFEQSE-GLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFM-DLAYLKNEIARD 176 (182)
Q Consensus 99 Dv~laiD~~~~a~-~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi-~l~~l~~~i~r~ 176 (182)
+-.+-..+++... .... +|+=||+- .=+.-+++.|.+++.+.-. +.....+...+|..| +|.+|.+.+++.
T Consensus 153 ~p~~f~~~~~~l~~~p~~-~l~VgDs~--~Di~~A~~aG~~~v~v~~~----~~~~~~~~~~pd~~i~~l~eL~~ll~~~ 225 (232)
T 1zrn_A 153 DNRVYELAEQALGLDRSA-ILFVASNA--WDATGARYFGFPTCWINRT----GNVFEEMGQTPDWEVTSLRAVVELFETA 225 (232)
T ss_dssp SHHHHHHHHHHHTSCGGG-EEEEESCH--HHHHHHHHHTCCEEEECTT----CCCCCSSSCCCSEEESSHHHHHTTC---
T ss_pred CHHHHHHHHHHHCCCCCC-EEEEECCH--HHHHHHHHCCCEEEEEECC----CCCCCCCCCCCCEEECCHHHHHHHHHHH
T ss_conf 778888999980979301-89896899--9999999849969998089----9976322589998989999999999851
Q ss_pred CCCCCC
Q ss_conf 311589
Q gi|254780936|r 177 PDEDKK 182 (182)
Q Consensus 177 ~~~~~~ 182 (182)
+-+.+|
T Consensus 226 ~~~~~~ 231 (232)
T 1zrn_A 226 AGKAEK 231 (232)
T ss_dssp ------
T ss_pred HHHHCC
T ss_conf 342336
No 95
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=27.77 E-value=28 Score=14.51 Aligned_cols=103 Identities=11% Similarity=0.106 Sum_probs=59.1
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH---
Q ss_conf 99999851792999999730688731467775799988975595697534589537888654356532999999999---
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE--- 108 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~--- 108 (182)
.+.+++.+.+.-...+.. +..........+...|.+++...|.......+. ....+..-+.+.+.
T Consensus 167 ~a~~~l~~~G~~~~~~i~-~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~~~~l 234 (332)
T 2hsg_A 167 DAVQSLIDSGHKNIAFVS-GTLEEPINHAKKVKGYKRALTESGLPVRDSYIV-----------EGDYTYDSGIEAVEKLL 234 (332)
T ss_dssp HHHHHHHTTTCSCEEEEE-SCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEE-----------ECCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEE-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEE-----------ECCCCHHHHHHHHHHHH
T ss_conf 999999975996599996-587787249999999999999839998800377-----------17898799999999998
Q ss_pred -HHCCCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEECC
Q ss_conf -421158899983866589999999984988----999983157
Q gi|254780936|r 109 -QSEGLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVLS 147 (182)
Q Consensus 109 -~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~~ 147 (182)
..+.++ +|++++|.--..++..|++.|.+ +.|+++...
T Consensus 235 ~~~~~~~-ai~~~~d~~A~g~~~al~~~g~~iP~di~vvg~d~~ 277 (332)
T 2hsg_A 235 EEDEKPT-AIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNT 277 (332)
T ss_dssp HSSSCCS-EEEESSHHHHHHHHHHHHHTTCCHHHHCEEEEESCC
T ss_pred HCCCCCC-EEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 3699995-799773299999999999849999998699997886
No 96
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structural genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=27.75 E-value=28 Score=14.51 Aligned_cols=29 Identities=10% Similarity=0.045 Sum_probs=23.8
Q ss_pred EEEEECCC--HHHHHHHHHHHHCCCEEEEEE
Q ss_conf 89998386--658999999998498899998
Q gi|254780936|r 115 HLVIFSGD--GCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 115 ~~iLvSGD--~Df~pli~~lr~~Gk~V~v~~ 143 (182)
-++-++|+ .+.-.++..|+++|.+|+++.
T Consensus 66 l~v~l~G~~~~~~~~a~~~L~~~~v~vEvl~ 96 (98)
T 3ced_A 66 LVLHIPYISSVDFGKFEKELIERQVKMEVLR 96 (98)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9999857998999999999998698799946
No 97
>1vsr_A Protein (VSR endonuclease); DNA repair, mismatch recognition, hydrolase; 1.80A {Escherichia coli K12} SCOP: c.52.1.15 PDB: 1odg_A*
Probab=27.30 E-value=15 Score=16.23 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=27.5
Q ss_pred CCCEEEEEEEHHHHHHHH-HHCC--CCCCHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 887189998078999999-8508--767989999998517929999997306887314677757999889755956975
Q gi|254780936|r 4 PREKIALFIDGANLYASS-KALG--FDIDYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVA 79 (182)
Q Consensus 4 ~~~rvaIfID~~Nl~~~~-~~~~--~~~d~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~ 79 (182)
|..|+||||||... |+- ..+. ..-+-.-..+.+.. ...+-..-...|...|+.|..
T Consensus 35 ~k~k~aIfVdGcFW-H~h~c~~~~~Pktn~~fW~~Ki~~-------------------N~~RD~~~~~~L~~~Gw~Vl~ 93 (136)
T 1vsr_A 35 DEYRCVIFTHGCFW-HHHHCYLFKVPATRTEFWLEKIGK-------------------NVERDRRDISRLQELGWRVLI 93 (136)
T ss_dssp GGGTEEEEEECTTT-TTCSSTTCCCCSSSHHHHHHHHHH-------------------HHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEEECCCC-CCCCCCCCCCCCCHHHHHHHHHHH-------------------HHHHHHHHHHHHHHCCCEEEE
T ss_conf 58758999847503-689976578998758999999988-------------------899899999999988898999
No 98
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264}
Probab=27.21 E-value=29 Score=14.45 Aligned_cols=80 Identities=15% Similarity=0.060 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCE
Q ss_conf 67775799988975595697534589537888654356532999999999421158899983866589999999984988
Q gi|254780936|r 59 QFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKK 138 (182)
Q Consensus 59 ~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~ 138 (182)
...+...|.+++++.|..+....... ... ..+. -...+..++...+. -++|++++|.--..+++.+++.|.+
T Consensus 140 ~~~R~~gf~~~~~~~g~~~~~~~~~~-~~~----~~~~--~~~~~~~~l~~~~~-~~ai~~~~D~~A~g~~~al~~~g~~ 211 (291)
T 3egc_A 140 SRERLKGFRAAMSAAGLPVRQEWIAA-GGV----RADN--GRDGAIKVLTGADR-PTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp HHHHHHHHHHHHHHTTCCCCGGGEEC-----------C--CHHHHHHHHTC-CC-CSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHCCC-CCC----CHHH--HHHHHHHHHHCCCC-CCCEECCCHHHHHHHHHHHHHHCCC
T ss_conf 88999999999998499843211236-776----4557--99999999855999-8510115789998799999983898
Q ss_pred ----EEEEEEEC
Q ss_conf ----99998315
Q gi|254780936|r 139 ----VTIVSTVL 146 (182)
Q Consensus 139 ----V~v~~~~~ 146 (182)
|-|+++..
T Consensus 212 vP~di~vig~D~ 223 (291)
T 3egc_A 212 YGPDVEIVSFDN 223 (291)
T ss_dssp BTTTBEEEEESC
T ss_pred CCCCCEEEEECC
T ss_conf 899868999678
No 99
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=27.18 E-value=29 Score=14.44 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=40.5
Q ss_pred HHHHHHHHH---CCC----CEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCC---CCCC--HHHHHHHCCCCE
Q ss_conf 999999942---115----88999838665899999999849889999831577---6547--089998521115
Q gi|254780936|r 102 LAVDAFEQS---EGL----EHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSD---PSMA--SDQLRRQADYFM 164 (182)
Q Consensus 102 laiD~~~~a---~~~----d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~---~~~~--S~~L~~~ad~fi 164 (182)
-.++.++.| +++ -|..=+|+||=.+.++..+-+.||+|+++.+.++- .+|. |+.|.++--+.+
T Consensus 351 ~vv~fl~~AA~DP~V~aIK~TLYR~~~~S~Iv~aLi~AAenGK~VtvlVELkARFDEenNI~WA~~LE~AGv~Vi 425 (687)
T 1xdp_A 351 HVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHNGKKVTVVVELQARFDEEANIHWAKRLTEAGVHVI 425 (687)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEESSCCTTCHHHHHHHHHHHTTCEEEEEECTTCSSTTTTTTTTTHHHHHHTCEEE
T ss_pred HHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEHHHCCHHHHHHHHHHHHHCCCEEE
T ss_conf 789999998569985898667874478985899999999739889999997212257667999999997897999
No 100
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=26.84 E-value=29 Score=14.41 Aligned_cols=20 Identities=10% Similarity=-0.125 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHCCCEEEEEE
Q ss_conf 58999999998498899998
Q gi|254780936|r 124 CFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 124 Df~pli~~lr~~Gk~V~v~~ 143 (182)
+-+.+++.+++.|.+++.++
T Consensus 89 e~v~a~~~a~~~g~~~i~iT 108 (329)
T 3eua_A 89 ETVKAAAFARGKGALTIAMT 108 (329)
T ss_dssp HHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHCCEEEEEE
T ss_conf 99999999998398378630
No 101
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=26.80 E-value=30 Score=14.40 Aligned_cols=48 Identities=21% Similarity=0.158 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHH----HCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEEEEC
Q ss_conf 329999999994----2115889998386658999999998498--899998315
Q gi|254780936|r 98 MDVELAVDAFEQ----SEGLEHLVIFSGDGCFTTLVAALQRKVK--KVTIVSTVL 146 (182)
Q Consensus 98 ~Dv~laiD~~~~----a~~~d~~iLvSGD~Df~pli~~lr~~Gk--~V~v~~~~~ 146 (182)
.+..-+.+.++. -+.++ +|+.++|.--.-+++.+++.|+ +|.++++..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~d~~a~g~~~al~~~g~~~dv~i~g~d~ 228 (288)
T 1gud_A 175 WDRIKALDVATNVLQRNPNIK-AIYCANDTMAMGVAQAVANAGKTGKVLVVGTDG 228 (288)
T ss_dssp TCHHHHHHHHHHHHHHCTTCC-EEEESSHHHHHHHHHHHHHTTCTTTSEEEEESC
T ss_pred HHHHHHHHHHHHHHHCCCCCE-EEECCCCHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 246899999998874199860-575359889999999999769999849999898
No 102
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=26.66 E-value=30 Score=14.39 Aligned_cols=43 Identities=9% Similarity=-0.018 Sum_probs=28.0
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECC
Q ss_conf 9999421158899983866589999999984988999983157
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLS 147 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~ 147 (182)
+++.+...-..++++-|.-==++++..+.+.|++|+++.....
T Consensus 159 ~~~~l~~~p~~v~ViGgG~ig~E~A~~l~~lG~~Vtli~~~~~ 201 (450)
T 1ges_A 159 GFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA 201 (450)
T ss_dssp HHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred HHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 3416150699899999899999999999976997999970365
No 103
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=26.48 E-value=30 Score=14.37 Aligned_cols=98 Identities=12% Similarity=0.045 Sum_probs=56.6
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--H
Q ss_conf 99998517929999997306887314677757999889755956975345895378886543565329999999994--2
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ--S 110 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~--a 110 (182)
+++.+...+.-..+++ .+. ........+...|.+++...|..+.... .+ .+.+. .-.+.+. .
T Consensus 165 a~~~l~~~G~~~i~~~-~g~-~~~~~~~~r~~g~~~~~~~~~~~~~~~~----~~--------~~~~~--~~~~~~~l~~ 228 (333)
T 3jvd_A 165 LTESVLGGSGMNIAAL-VGE-ESLSTTQERMRGISHAASIYGAEVTFHF----GH--------YSVES--GEEMAQVVFN 228 (333)
T ss_dssp HHHHHCCSSSCEEEEE-ESC-TTSHHHHHHHHHHHHHHHHTTCEEEEEE----CC--------SSHHH--HHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEE-CCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEE----CC--------CCHHH--HHHHHHHHHC
T ss_conf 6677764288036897-044-2103678889999999997599732652----45--------52021--7888999962
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEEC
Q ss_conf 1158899983866589999999984988----99998315
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVL 146 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~ 146 (182)
...-++|++++|.--..++..+++.|++ |.|+++..
T Consensus 229 ~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~disvig~D~ 268 (333)
T 3jvd_A 229 NGLPDALIVASPRLMAGVMRAFTRLNVRVPHDVVIGGYDD 268 (333)
T ss_dssp TCCCSEEEECCHHHHHHHHHHHHHTTCCTTTTCEEEEESC
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf 7998743107999999999999984999999879999798
No 104
>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf}
Probab=25.56 E-value=31 Score=14.26 Aligned_cols=102 Identities=10% Similarity=0.003 Sum_probs=56.9
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99998517929999997306887314677757999889755956975345895378886543565329999999994211
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEG 112 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~ 112 (182)
..+.|.+.+.-.. .|.+..........+...|.+++...|..+..... .........+. +++.+.....
T Consensus 163 a~~~L~~~G~r~I--~~l~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~l~~~~~ 231 (330)
T 3ctp_A 163 AFDHLYEKGCRKI--LHIKGPEVFEATELRYKGFLDGARAKDLEIDFIEF---QHDFQVKMLEE------DINSMKDIVN 231 (330)
T ss_dssp HHHHHHHTTCCSE--EEEECCTTCHHHHHHHHHHHHHHHHTTCCCEEEEC---SSSCCGGGGGC------CCTTGGGGGG
T ss_pred HHHHHHHCCCCEE--EEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHH------HHHHHHHCCC
T ss_conf 9999998699669--99706666708999999999999854555420001---23015778998------8888873458
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEEC
Q ss_conf 58899983866589999999984988----99998315
Q gi|254780936|r 113 LEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVL 146 (182)
Q Consensus 113 ~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~ 146 (182)
. ++|++++|.--..++..+++.|.+ +.|+++..
T Consensus 232 ~-~ai~~~~d~~a~g~~~~l~~~g~~vp~disvig~d~ 268 (330)
T 3ctp_A 232 Y-DGIFVFNDIAAATVMRALKKRGVSIPQEVQIIGFDN 268 (330)
T ss_dssp S-SEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBC
T ss_pred C-CCCEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 9-852323789999999999981999872268851287
No 105
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=25.33 E-value=31 Score=14.23 Aligned_cols=32 Identities=19% Similarity=0.103 Sum_probs=26.2
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 21158899983866589999999984988999
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVKKVTI 141 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v 141 (182)
.+++|.++|.|-..-..+.+..+-+.||.|.+
T Consensus 70 ~~~iD~V~I~tp~~~H~~~~~~al~~gk~Vl~ 101 (312)
T 3o9z_A 70 GEGVDYLSIASPNHLHYPQIRMALRLGANALS 101 (312)
T ss_dssp TCCCSEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 79965999989957899999999971994898
No 106
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=25.10 E-value=32 Score=14.21 Aligned_cols=80 Identities=11% Similarity=0.105 Sum_probs=47.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCC-CEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH----HHCCCCEEEEECCCHHHH
Q ss_conf 68873146777579998897559-5697534589537888654356532999999999----421158899983866589
Q gi|254780936|r 52 VVGDPEQQFSPLHPLLDWLHYNG-FQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE----QSEGLEHLVIFSGDGCFT 126 (182)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~----~a~~~d~~iLvSGD~Df~ 126 (182)
..........+...|.++|...+ .++.. ... ...|..-+.++++ ..+.+ ++|++++|....
T Consensus 131 g~~~~~~~~~R~~gf~~~l~~~~~~~~~~---~~~----------~~~~~~~~~~~~~~~l~~~~~~-~ai~~~~d~~a~ 196 (283)
T 2ioy_A 131 GIPGASAARDRGKGFDEAIAKYPDIKIVA---KQA----------ADFDRSKGLSVMENILQAQPKI-DAVFAQNDEMAL 196 (283)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCTTEEEEE---EEE----------CTTCHHHHHHHHHHHHHHCSCC-CEEEESSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEE---EEC----------CCCCHHHHHHHHHHHHHCCCCC-CEEEECCHHHHH
T ss_conf 99998699999999999998779982788---853----------7633799999999999559899-789968829999
Q ss_pred HHHHHHHHCCCE-EEEEEEE
Q ss_conf 999999984988-9999831
Q gi|254780936|r 127 TLVAALQRKVKK-VTIVSTV 145 (182)
Q Consensus 127 pli~~lr~~Gk~-V~v~~~~ 145 (182)
.++..+++.|.+ +.++++.
T Consensus 197 ~~~~~~~~~g~~dv~ivg~d 216 (283)
T 2ioy_A 197 GAIKAIEAANRQGIIVVGFD 216 (283)
T ss_dssp HHHHHHHHTTCCCCEEEEEE
T ss_pred HHHHHHHHCCCCCCEEEEEC
T ss_conf 99999998099988899978
No 107
>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=24.84 E-value=32 Score=14.18 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=30.3
Q ss_pred CEEEEEC-C---C-HHHHHHHHHHHHCCCEEEEEEEECCCCCC------CHHHHHHHCC
Q ss_conf 8899983-8---6-65899999999849889999831577654------7089998521
Q gi|254780936|r 114 EHLVIFS-G---D-GCFTTLVAALQRKVKKVTIVSTVLSDPSM------ASDQLRRQAD 161 (182)
Q Consensus 114 d~~iLvS-G---D-~Df~pli~~lr~~Gk~V~v~~~~~~~~~~------~S~~L~~~ad 161 (182)
-.+||+| | | .+...+++.+|+.|.+|..+++..+.... ...+|+..|.
T Consensus 111 k~villTDG~~~d~~~~~~~~~~lk~~gi~v~~Vgvg~~~~~~~~~~~~~~~eL~~iAs 169 (213)
T 1pt6_A 111 KVMVIVTDGESHDNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIAS 169 (213)
T ss_dssp EEEEEEESSCCSCSHHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 89999846987884159999999998899999999747655454333246999999866
No 108
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, alternative splicing, FAD, mitochondrion, NADP, redox-active center, selenium; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=24.62 E-value=32 Score=14.15 Aligned_cols=39 Identities=13% Similarity=0.025 Sum_probs=26.1
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 999942115889998386658999999998498899998
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
|++++...-..++++-|--==+++...+.+.|++|+++.
T Consensus 177 ~~~~l~~~P~~lvIIGgG~IG~E~A~~f~~lG~~VTii~ 215 (488)
T 3dgz_A 177 DIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMM 215 (488)
T ss_dssp HHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 732221079729999277588888999986698489997
No 109
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=24.38 E-value=33 Score=14.12 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=37.6
Q ss_pred HHHHHHHHH---CCC----CEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCC---CCCC--HHHHHHHCCCCE
Q ss_conf 999999942---115----88999838665899999999849889999831577---6547--089998521115
Q gi|254780936|r 102 LAVDAFEQS---EGL----EHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSD---PSMA--SDQLRRQADYFM 164 (182)
Q Consensus 102 laiD~~~~a---~~~----d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~---~~~~--S~~L~~~ad~fi 164 (182)
-.++.+..| +++ -|+.=+|+||=.+.++..+-+.||+|+|+.+.++- ++|. |+.|.++--+.+
T Consensus 356 ~vv~fl~eAA~DP~V~aIK~TLYR~a~~S~Iv~aLi~AAenGK~VtvlVELkARFDEe~NI~WA~~LE~aGv~Vi 430 (705)
T 2o8r_A 356 YVVRLLMEAAISPDVSEIRLTQYRVAENSSIISALEAAAQSGKKVSVFVELKARFDEENNLRLSERMRRSGIRIV 430 (705)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEESCCCSCCHHHHHHHHHHHTTCEEEEEECCCSCC----CHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEE
T ss_conf 579999998579981798657874378883899999999759889999962102278879999999986885997
No 110
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=24.38 E-value=33 Score=14.12 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH---H---CCCCEEEEECCCHHHHHHHH
Q ss_conf 14677757999889755956975345895378886543565329999999994---2---11588999838665899999
Q gi|254780936|r 57 EQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ---S---EGLEHLVIFSGDGCFTTLVA 130 (182)
Q Consensus 57 ~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~---a---~~~d~~iLvSGD~Df~pli~ 130 (182)
.....+...+.+.|...+.++....... ..+|..-+..+++. + +.++ +|++..|.--..+++
T Consensus 153 ~~~~~R~~g~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~d~~a~g~~~ 220 (309)
T 2fvy_A 153 PDAEARTTYVIKELNDKGIKTEQLQLDT-----------AMWDTAQAKDKMDAWLSGPNANKIE-VVIANNDAMAMGAVE 220 (309)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEEE-----------CTTCHHHHHHHHHHHHTSTTGGGCC-EEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEEE-----------CCCCHHHHHHHHHHHHHCCCCCCCC-EEEECCCHHHHHHHH
T ss_conf 6199999878876876098731457873-----------0210167899999997434468864-476268578899999
Q ss_pred HHHHCCC-EEEEEEEE
Q ss_conf 9998498-89999831
Q gi|254780936|r 131 ALQRKVK-KVTIVSTV 145 (182)
Q Consensus 131 ~lr~~Gk-~V~v~~~~ 145 (182)
.|++.|+ .+.++++.
T Consensus 221 al~~~g~~~i~v~g~D 236 (309)
T 2fvy_A 221 ALKAHNKSSIPVFGVD 236 (309)
T ss_dssp HHHHTTCTTSCEECSB
T ss_pred HHHHHCCCCCEEEEEC
T ss_conf 9998299997699977
No 111
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=24.21 E-value=33 Score=14.10 Aligned_cols=31 Identities=10% Similarity=0.064 Sum_probs=24.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 1158899983866589999999984988999
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTI 141 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v 141 (182)
+++|.++|.|-+....+++..+-+.||.|.+
T Consensus 70 ~~vD~v~I~tp~~~h~~~~~~al~~Gk~V~~ 100 (346)
T 3cea_A 70 ENIDAIFIVAPTPFHPEMTIYAMNAGLNVFC 100 (346)
T ss_dssp SCCSEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEECHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9988899957176589999999864985988
No 112
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=23.87 E-value=33 Score=14.06 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=23.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 5889998386658999999998498899998315
Q gi|254780936|r 113 LEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVL 146 (182)
Q Consensus 113 ~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~ 146 (182)
-..++++-|.-==++++..+.+.|++|+++.-..
T Consensus 191 pk~vvVIGgG~iG~E~A~~l~~~G~~Vtlie~~~ 224 (484)
T 3o0h_A 191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGD 224 (484)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9869999988999999999997498899996045
No 113
>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A*
Probab=23.60 E-value=34 Score=14.03 Aligned_cols=78 Identities=9% Similarity=0.009 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH----HCCCCEEEEECCCHHHHHHHHH
Q ss_conf 314677757999889755956975345895378886543565329999999994----2115889998386658999999
Q gi|254780936|r 56 PEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ----SEGLEHLVIFSGDGCFTTLVAA 131 (182)
Q Consensus 56 ~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~----a~~~d~~iLvSGD~Df~pli~~ 131 (182)
......+...|.+++...+........ ....|..-+..++.. .+.+ +++++++|..-..+++.
T Consensus 143 ~~~~~~r~~g~~~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~-~ai~~~~d~~a~g~~~a 209 (290)
T 2fn9_A 143 AQPTWDRSNGFHSVVDQYPEFKMVAQQ------------SAEFDRDTAYKVTEQILQAHPEI-KAIWCGNDAMALGAMKA 209 (290)
T ss_dssp CHHHHHHHHHHHHHHTTSTTEEEEEEE------------ECTTCHHHHHHHHHHHHHHCTTC-CEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCEEEE------------CCCCCHHHHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHHH
T ss_conf 724788998899999742566630122------------15678889888999998624464-49998782999999999
Q ss_pred HHHCCCE-EEEEEEEC
Q ss_conf 9984988-99998315
Q gi|254780936|r 132 LQRKVKK-VTIVSTVL 146 (182)
Q Consensus 132 lr~~Gk~-V~v~~~~~ 146 (182)
+++.|++ +.++++..
T Consensus 210 l~~~g~~~i~i~g~d~ 225 (290)
T 2fn9_A 210 CEAAGRTDIYIFGFDG 225 (290)
T ss_dssp HHHTTCTTCEEECCBC
T ss_pred HHHHCCCCCEEECCCC
T ss_conf 9984997674606679
No 114
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=23.54 E-value=34 Score=14.02 Aligned_cols=29 Identities=10% Similarity=-0.085 Sum_probs=16.8
Q ss_pred CCCEEEEECCCHHHH------HHHHHHHHCCCEEE
Q ss_conf 158899983866589------99999998498899
Q gi|254780936|r 112 GLEHLVIFSGDGCFT------TLVAALQRKVKKVT 140 (182)
Q Consensus 112 ~~d~~iLvSGD~Df~------pli~~lr~~Gk~V~ 140 (182)
+--.++.-+=...+- .-++.|++.|..|+
T Consensus 107 ~~pvii~PaMn~~M~~~p~~~~nl~~L~~~G~~vi 141 (181)
T 1g63_A 107 YQKLFIFPNMNIRMWGNPFLQKNIDLLKNNDVKVY 141 (181)
T ss_dssp GGGEEEEECCCHHHHTCHHHHHHHHHHHTTTCEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 99769984869999840899999999997897997
No 115
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=23.32 E-value=34 Score=13.99 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=21.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 1588999838665899999999849889999
Q gi|254780936|r 112 GLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 112 ~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
+||++|+=+|=+-+.-+++. .+.|.+|.|+
T Consensus 26 ~yDViVIGaG~AGl~AAi~a-ae~Ga~V~ll 55 (447)
T 2i0z_A 26 HYDVIVIGGGPSGLMAAIGA-AEEGANVLLL 55 (447)
T ss_dssp CCSEEEECCSHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCCEEEECCCHHHHHHHHHH-HHCCCCEEEE
T ss_conf 02869989689999999999-9789988999
No 116
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=22.55 E-value=36 Score=13.90 Aligned_cols=40 Identities=23% Similarity=0.123 Sum_probs=27.3
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 9999421158899983866589999999984988999983
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~ 144 (182)
+++++...-..++++-|.-==+++...+.+.|++|+++.-
T Consensus 169 ~~~~l~~~pk~vvVvGgG~ig~E~A~~l~~~G~~Vtlv~~ 208 (470)
T 1dxl_A 169 GALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEF 208 (470)
T ss_dssp HHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECS
T ss_pred HHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 6418020698199999689999999999976997999986
No 117
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 1.71A {Vibrio parahaemolyticus rimd 2210633} SCOP: d.58.18.13
Probab=22.42 E-value=36 Score=13.88 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=24.3
Q ss_pred EEEEECCCHH-HHHHHHHHHHCCCEEEEEE
Q ss_conf 8999838665-8999999998498899998
Q gi|254780936|r 115 HLVIFSGDGC-FTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 115 ~~iLvSGD~D-f~pli~~lr~~Gk~V~v~~ 143 (182)
-++.++||.+ .-.++..|+++|..|++++
T Consensus 69 L~l~l~g~~~~~~~ai~~L~~~~v~vEvlg 98 (101)
T 2qrr_A 69 MVAELFGNEQDDSAAIEYLRENNVKVEVLG 98 (101)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 999997999999999999998599699940
No 118
>1nri_A Hypothetical protein HI0754; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=22.41 E-value=36 Score=13.88 Aligned_cols=50 Identities=10% Similarity=0.042 Sum_probs=36.8
Q ss_pred CCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 1158899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 111 EGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 111 ~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
..=|++|.+|..+ .-+.+++.+|+.|..++.++... ...|...||..+.+
T Consensus 139 ~~~DvvI~IS~SG~tp~vi~al~~Ak~~G~~ti~it~~~------~s~l~~~ad~~I~~ 191 (306)
T 1nri_A 139 SKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNP------KSEMAEIADIAIET 191 (306)
T ss_dssp CTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESST------TCHHHHHSSEEEEC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCC------CCCCCHHCCEEEEC
T ss_conf 988848999689996457999999997268669997688------75100217767854
No 119
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=22.34 E-value=36 Score=13.87 Aligned_cols=13 Identities=8% Similarity=-0.082 Sum_probs=4.7
Q ss_pred HHHHHHHCCCEEE
Q ss_conf 9988975595697
Q gi|254780936|r 66 LLDWLHYNGFQVV 78 (182)
Q Consensus 66 ~~~~l~~~g~~v~ 78 (182)
+...++..|-+++
T Consensus 248 l~r~~~~~Gg~i~ 260 (453)
T 2bcg_G 248 FARLSAIYGGTYM 260 (453)
T ss_dssp HHHHHHHTTCEEE
T ss_pred HHHHHHHCCCEEE
T ss_conf 9999986399899
No 120
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=22.21 E-value=36 Score=13.86 Aligned_cols=67 Identities=7% Similarity=0.019 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHH---------CCC-CEEEEECC------CHHHHHHHHHHHHCCCEEEEEEEECCCCCCC-HHHHH
Q ss_conf 5653299999999942---------115-88999838------6658999999998498899998315776547-08999
Q gi|254780936|r 95 KSSMDVELAVDAFEQS---------EGL-EHLVIFSG------DGCFTTLVAALQRKVKKVTIVSTVLSDPSMA-SDQLR 157 (182)
Q Consensus 95 kk~~Dv~laiD~~~~a---------~~~-d~~iLvSG------D~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~-S~~L~ 157 (182)
.+++...-++...... ++. ..+||+|. ..+...++..++..|.++.+++...+..+.. -.+|+
T Consensus 83 ~~~t~~~~al~~a~~~~~~~~~~~r~~~~kvivlltDG~~~~~~~~~~~~~~~~~~~gv~i~~Ig~g~~~~~~~~~~~L~ 162 (198)
T 1n3y_A 83 QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELN 162 (198)
T ss_dssp CSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHH
T ss_conf 69873889999999998423205778764259999358988872059999999997898899999787667753499999
Q ss_pred HHCC
Q ss_conf 8521
Q gi|254780936|r 158 RQAD 161 (182)
Q Consensus 158 ~~ad 161 (182)
..|.
T Consensus 163 ~ias 166 (198)
T 1n3y_A 163 DIAS 166 (198)
T ss_dssp HHSC
T ss_pred HHHC
T ss_conf 9866
No 121
>2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Pyrococcus horikoshii} SCOP: c.26.2.1 PDB: 3h7e_A* 1ru8_A
Probab=22.11 E-value=36 Score=13.84 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=7.3
Q ss_pred CCCEEEEEEEHH
Q ss_conf 887189998078
Q gi|254780936|r 4 PREKIALFIDGA 15 (182)
Q Consensus 4 ~~~rvaIfID~~ 15 (182)
.|-+|++++=|+
T Consensus 3 ~~~~v~vl~SGG 14 (227)
T 2d13_A 3 GLADVAVLYSGG 14 (227)
T ss_dssp CSCEEEEECCSS
T ss_pred CCCCEEEECCCC
T ss_conf 866499993686
No 122
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=21.85 E-value=37 Score=13.81 Aligned_cols=12 Identities=8% Similarity=0.495 Sum_probs=5.0
Q ss_pred HHHHHHCCCEEE
Q ss_conf 988975595697
Q gi|254780936|r 67 LDWLHYNGFQVV 78 (182)
Q Consensus 67 ~~~l~~~g~~v~ 78 (182)
...|...|..++
T Consensus 74 ~~~l~~~gi~v~ 85 (155)
T 1byr_A 74 MNYIANSGIPLR 85 (155)
T ss_dssp HHHHHHTTCCEE
T ss_pred HHHHHHCCCCCC
T ss_conf 999984588742
No 123
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A
Probab=21.49 E-value=37 Score=13.77 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEE
Q ss_conf 3299999999942115889998386-6589999999984988999
Q gi|254780936|r 98 MDVELAVDAFEQSEGLEHLVIFSGD-GCFTTLVAALQRKVKKVTI 141 (182)
Q Consensus 98 ~Dv~laiD~~~~a~~~d~~iLvSGD-~Df~pli~~lr~~Gk~V~v 141 (182)
.|.-||.-++.+ ...|||+| +||-+ +++.|.+|.-
T Consensus 97 ~D~lIAAtA~~~-----~~~LvT~n~kdF~~----i~~~Gl~v~~ 132 (149)
T 1v96_A 97 EDIITATTAIYT-----NSLLVTDDPKRYEP----IRRFGLDTMP 132 (149)
T ss_dssp HHHHHHHHHHHH-----TCEEEESCHHHHGG----GGGGTCCEEE
T ss_pred HHHHHHHHHHHC-----CCEEEECCHHHCCH----HHHCCCEEEC
T ss_conf 599999999985-----99899898798146----8767966961
No 124
>1vkf_A Glycerol uptake operon antiterminator-related protein; TM1436, structural genomics, JCSG, PSI, protein structure initiative; HET: CIT; 1.65A {Thermotoga maritima MSB8} SCOP: c.1.29.1
Probab=21.34 E-value=38 Score=13.75 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=5.2
Q ss_pred HHHHHHHHHHCCCEE
Q ss_conf 899999999849889
Q gi|254780936|r 125 FTTLVAALQRKVKKV 139 (182)
Q Consensus 125 f~pli~~lr~~Gk~V 139 (182)
.-.+++.+++.||.|
T Consensus 45 L~~iv~~~k~~gK~v 59 (188)
T 1vkf_A 45 LKFHLKILKDRGKTV 59 (188)
T ss_dssp HHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHCCCEE
T ss_conf 999999999869989
No 125
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=21.22 E-value=38 Score=13.73 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=25.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 1158899983866589999999984988999
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTI 141 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v 141 (182)
.++|.++|.|-+.-..+.+..+-+.||.|.+
T Consensus 90 ~~iD~V~I~tp~~~H~~~~~~al~~g~~v~~ 120 (444)
T 2ixa_A 90 KNIDAVFVSSPWEWHHEHGVAAMKAGKIVGM 120 (444)
T ss_dssp TTCCEEEECCCGGGHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 9998899858827689999999971987774
No 126
>2o4u_X Dimeric dihydrodiol dehydrogenase; NADP-binding rossmann-fold domain, predominantly anti- parallel beta sheet, oxidoreductase; 2.00A {Macaca fascicularis} PDB: 2o48_X 2poq_X*
Probab=20.74 E-value=39 Score=13.67 Aligned_cols=31 Identities=13% Similarity=-0.071 Sum_probs=20.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 1158899983866589999999984988999
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTI 141 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v 141 (182)
+.+|.++|.|......+++..+-+.||.|.+
T Consensus 65 ~~iD~v~I~tp~~~h~~~~~~al~~gkhVl~ 95 (334)
T 2o4u_X 65 PNVEVAYVGTQHPQHKAAVMLCLAAGKAVLC 95 (334)
T ss_dssp TTCSEEEECCCGGGHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCEEEE
T ss_conf 9998899905654114778999986991884
No 127
>1cw0_A Protein (DNA mismatch endonuclease); protein-DNA complex, intercalation, zinc, hydrolase/DNA; HET: DNA; 2.30A {Escherichia coli} SCOP: c.52.1.15
Probab=20.56 E-value=24 Score=14.92 Aligned_cols=12 Identities=42% Similarity=0.274 Sum_probs=5.5
Q ss_pred HHHHCCCEEEEE
Q ss_conf 999849889999
Q gi|254780936|r 131 ALQRKVKKVTIV 142 (182)
Q Consensus 131 ~lr~~Gk~V~v~ 142 (182)
.|++.|-+|..+
T Consensus 102 ~L~~~GW~vlri 113 (155)
T 1cw0_A 102 RLQELGWRVLIV 113 (155)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHCCCEEEEE
T ss_conf 999797989998
No 128
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=20.42 E-value=39 Score=13.63 Aligned_cols=93 Identities=19% Similarity=0.254 Sum_probs=54.1
Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-CCCCEEEE--ECCCHHHHHHHHHHHHCCC--E
Q ss_conf 79998897559569753458953788865435653299999999942-11588999--8386658999999998498--8
Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS-EGLEHLVI--FSGDGCFTTLVAALQRKVK--K 138 (182)
Q Consensus 64 ~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a-~~~d~~iL--vSGD~Df~pli~~lr~~Gk--~ 138 (182)
......|+..|+++.... .|-.-|++.+... +.+|.+++ .=.|-|=..+++++|+.++ .
T Consensus 50 ~~l~~~L~~~g~~vv~~a----------------~~g~eAl~~~~~~~p~~dlvilD~~mP~~dG~e~~~~ir~~~~~~p 113 (157)
T 3hzh_A 50 KQLTQIFTSEGFNIIDTA----------------ADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNAR 113 (157)
T ss_dssp HHHHHHHHHTTCEEEEEE----------------SSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHCCCEEEEEE----------------CCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 999999998799899998----------------9999999999841989189998568999978999999997199997
Q ss_pred EEEEEEECCCCCCCHHHHHHHCCCCE----EHHHHHHHH
Q ss_conf 99998315776547089998521115----189978762
Q gi|254780936|r 139 VTIVSTVLSDPSMASDQLRRQADYFM----DLAYLKNEI 173 (182)
Q Consensus 139 V~v~~~~~~~~~~~S~~L~~~ad~fi----~l~~l~~~i 173 (182)
|++++ ..+......+.++.-++.|+ +.+++...+
T Consensus 114 iI~lT-~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i 151 (157)
T 3hzh_A 114 VIMIS-ALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRV 151 (157)
T ss_dssp EEEEE-SCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHH
T ss_pred EEEEE-CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHH
T ss_conf 68763-279999999999859988997989999999999
No 129
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=20.39 E-value=39 Score=13.62 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=10.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 5889998386658999999998498
Q gi|254780936|r 113 LEHLVIFSGDGCFTTLVAALQRKVK 137 (182)
Q Consensus 113 ~d~~iLvSGD~Df~pli~~lr~~Gk 137 (182)
+|+.||+.++.+.-++.+.|.+.|.
T Consensus 56 IDCLVl~~~~~~l~~~~~qL~~~Gl 80 (289)
T 1r8j_A 56 IDCLILVAANPSFRAVVQQLCFEGV 80 (289)
T ss_dssp CSEEEEETTSTTHHHHHHHHHHTTC
T ss_pred CCEEEEEECCCCHHHHHHHHHHCCC
T ss_conf 7779997158742899999996585
No 130
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=20.38 E-value=39 Score=13.62 Aligned_cols=53 Identities=11% Similarity=0.016 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEHHHHHHHHC
Q ss_conf 866589999999984988999983157765470899985211151899787622
Q gi|254780936|r 121 GDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDLAYLKNEIA 174 (182)
Q Consensus 121 GD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l~~l~~~i~ 174 (182)
+..++..+++.+++.|.++.++...-..++.+...|..-+ .+..+.++.+.+.
T Consensus 57 ~~~~~~~~l~~l~~~gv~~~vC~~~~~~rGi~~~~l~~g~-~~~~~~~l~~~i~ 109 (117)
T 1jx7_A 57 EGYNIQQMLEILTAQNVPVKLCKTCTDGRGISTLPLIDGV-EIGTLVELAQWTL 109 (117)
T ss_dssp SSCCHHHHHHHHHHTTCCEEEEHHHHHHTTCTTSCBCTTE-EEECHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCHHHCCCCC-EECCHHHHHHHHH
T ss_conf 3041999999999869889987899987299714314772-8839999999999
No 131
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; reductive methylation, structural genomics, PSI 2, protein structure initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=20.21 E-value=40 Score=13.60 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=23.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 1158899983866589999999984988999
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTI 141 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v 141 (182)
+++|.++|.|-.....+.+..+-+.||.|.+
T Consensus 61 ~~iD~V~I~tp~~~H~~~~~~al~~gkhV~~ 91 (325)
T 2ho3_A 61 SSFDLVYIASPNSLHFAQAKAALSAGKHVIL 91 (325)
T ss_dssp SSCSEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCHHC
T ss_conf 9998999958960315999999863451222
No 132
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=20.19 E-value=40 Score=13.60 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 5899999999849889999831577654708999852111518
Q gi|254780936|r 124 CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 124 Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
-+..++++|++.|..|++++ + --++.++||+.+++
T Consensus 771 ~l~~lL~~L~~~G~TvivIt----H----dl~~v~~ADriivm 805 (842)
T 2vf7_A 771 RLQRQLVKLVDAGNTVIAVE----H----KMQVVAASDWVLDI 805 (842)
T ss_dssp HHHHHHHHHHHTTCEEEEEC----C----CHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEE----C----CHHHHHHCCEEEEC
T ss_conf 99999999997799899992----7----99999759999986
Done!