HHSEARCH alignment of GI: 254780936 and SCOP domain: d1cmwa2

Alignment

Probab=96.12  E-value=0.035  Score=31.19  Aligned_cols=60  Identities=13%  Similarity=0.124  Sum_probs=35.8

Q ss_pred             HHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             9998897559569753458953788865435653299999999942115889998386658999999998498899998
Q gi|254780936|r   65 PLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS  143 (182)
Q Consensus        65 ~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~  143 (182)
                      .....+...|+.+...|             .-.+|=-|+.=+-.....-..++|+|+|.||..|+.      .+|.++.
T Consensus        89 ~~~~~~~~~g~~~~~~~-------------~~EADDvIa~la~~~~~~~~~v~IvS~DkD~~QLv~------~~v~i~~  148 (164)
T d1cmwa2          89 LIKELVDLLGLARLEVP-------------GYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLS------DRIHVLH  148 (164)
T ss_dssp             HHHHHHHHTTCEEECCT-------------TSCHHHHHHHHHHHHHHTTEEEEEECSSGGGGGSCC------SSCEEEC
T ss_pred             HHHHHHHHCCCEEEEEC-------------CCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHEE------CCEEEEE
T ss_conf             99999751473278741-------------742477888999874332325899627977688422------9889996

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: PIN domain-like
superfamily: PIN domain-like
family: 5' to 3' exonuclease catalytic domain
domain: 5' to 3' exonuclease domain of DNA polymerase Taq
species: Thermus aquaticus [TaxId: 271]