Query gi|254780936|ref|YP_003065349.1| hypothetical protein CLIBASIA_04175 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 182 No_of_seqs 108 out of 875 Neff 8.2 Searched_HMMs 13730 Date Wed Jun 1 10:47:34 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780936.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1xo1a2 c.120.1.2 (A:19-185) T 96.2 0.019 1.3E-06 32.9 8.8 42 96-143 109-150 (167) 2 d1cmwa2 c.120.1.2 (A:10-173) 5 96.1 0.035 2.6E-06 31.2 9.8 60 65-143 89-148 (164) 3 d1tfra2 c.120.1.2 (A:12-180) T 95.7 0.057 4.1E-06 29.9 9.5 57 69-143 104-160 (169) 4 d7reqb2 c.23.6.1 (B:476-638) M 89.0 0.68 5E-05 23.1 10.5 119 29-166 21-144 (163) 5 d1m3sa_ c.80.1.3 (A:) Hypothet 87.7 0.69 5E-05 23.1 5.9 101 30-166 27-130 (186) 6 d1vima_ c.80.1.3 (A:) Hypothet 81.6 1.6 0.00011 20.9 5.6 104 27-166 24-133 (192) 7 d2qv7a1 e.52.1.2 (A:1-312) Dia 71.5 3 0.00022 19.1 10.4 97 45-156 4-102 (312) 8 d1jeoa_ c.80.1.3 (A:) Probable 68.5 3.2 0.00023 19.0 4.2 100 30-166 27-129 (177) 9 d1x94a_ c.80.1.3 (A:) Phosphoh 63.2 4 0.00029 18.3 3.9 53 108-166 107-162 (191) 10 d3lada1 c.3.1.5 (A:1-158,A:278 54.1 6 0.00044 17.2 3.5 11 70-80 109-119 (229) 11 d1f06a1 c.2.1.3 (A:1-118,A:269 51.6 3.1 0.00023 19.0 1.7 33 109-141 55-87 (170) 12 d1kjna_ c.115.1.1 (A:) Hypothe 50.9 7 0.00051 16.8 5.2 81 62-144 19-106 (152) 13 d1u0ta_ e.52.1.1 (A:) Inorgani 49.4 7.4 0.00054 16.7 7.9 88 57-144 12-103 (302) 14 d2pg3a1 c.26.2.1 (A:1-230) Que 47.7 7.9 0.00057 16.5 6.3 42 124-168 137-180 (230) 15 d8abpa_ c.93.1.1 (A:) L-arabin 47.5 7.9 0.00058 16.5 11.2 77 59-145 147-231 (305) 16 d1gpja2 c.2.1.7 (A:144-302) Gl 46.9 6.8 0.00049 16.9 2.8 73 105-179 77-156 (159) 17 d1gesa1 c.3.1.5 (A:3-146,A:263 43.4 8.6 0.00063 16.3 2.9 14 67-80 98-111 (217) 18 d1d5ta1 c.3.1.3 (A:-2-291,A:38 43.1 9.3 0.00067 16.1 3.5 18 120-137 231-249 (336) 19 d1a9xb1 c.8.3.1 (B:1502-1652) 43.1 9.3 0.00068 16.1 5.0 60 58-134 89-148 (151) 20 d1atza_ c.62.1.1 (A:) von Will 43.0 9.3 0.00068 16.0 5.2 45 114-161 107-154 (184) 21 d1wdea_ c.90.1.1 (A:) Diphthin 41.8 9.7 0.00071 15.9 4.7 38 105-142 71-112 (289) 22 d2bcgg1 c.3.1.3 (G:5-301) Guan 40.3 10 0.00075 15.8 3.5 26 115-140 227-254 (297) 23 d1j5pa4 c.2.1.3 (A:-1-108,A:22 39.8 9.8 0.00072 15.9 2.7 52 110-161 48-99 (132) 24 d2bona1 e.52.1.2 (A:5-299) Lip 39.6 11 0.00076 15.7 8.6 59 64-137 18-78 (295) 25 d2bdea1 c.108.1.23 (A:2-459) C 38.5 11 0.0008 15.6 4.6 45 98-144 157-209 (458) 26 d1p3y1_ c.34.1.1 (1:) MrsD {Ba 37.7 9.4 0.00068 16.0 2.4 12 4-15 5-16 (183) 27 d3ceda1 d.58.18.13 (A:247-341) 36.1 12 0.00087 15.4 4.9 29 115-143 63-93 (95) 28 d1r8ja2 c.23.1.5 (A:1-135) N-t 36.1 12 0.00087 15.4 4.5 41 103-143 40-83 (135) 29 d1tk9a_ c.80.1.3 (A:) Phosphoh 32.8 13 0.00098 15.0 5.3 52 109-166 107-161 (188) 30 d2deka1 c.90.1.1 (A:1-265) Dip 32.1 14 0.001 15.0 4.0 35 109-143 74-112 (265) 31 d1jx7a_ c.114.1.1 (A:) Hypothe 32.1 14 0.001 15.0 2.9 22 123-144 59-80 (117) 32 d1dxla1 c.3.1.5 (A:4-152,A:276 32.0 14 0.001 15.0 3.5 13 68-80 101-113 (221) 33 d1vhqa_ c.23.16.2 (A:) Putativ 31.9 14 0.001 14.9 4.7 34 111-144 84-136 (217) 34 d1h6va1 c.3.1.5 (A:10-170,A:29 30.1 15 0.0011 14.8 2.3 14 67-80 108-121 (235) 35 d1wd7a_ c.113.1.1 (A:) Probabl 29.9 15 0.0011 14.7 4.6 19 65-83 138-156 (254) 36 d1tlta1 c.2.1.3 (A:5-127,A:268 29.9 15 0.0011 14.7 4.7 31 111-141 60-90 (164) 37 d1h6da1 c.2.1.3 (A:51-212,A:37 29.8 15 0.0011 14.7 4.4 31 111-141 99-129 (221) 38 d1fe0a_ d.58.17.1 (A:) ATX1 me 29.7 15 0.0011 14.7 2.9 28 116-143 38-65 (66) 39 d1qyia_ c.108.1.13 (A:) Hypoth 29.4 15 0.0011 14.7 4.0 55 115-173 316-373 (380) 40 d1vhva_ c.90.1.1 (A:) Diphthin 28.8 16 0.0011 14.6 4.0 18 64-81 93-110 (251) 41 d1x92a_ c.80.1.3 (A:) Phosphoh 27.9 16 0.0012 14.5 5.0 36 109-144 107-145 (194) 42 d2o8ra3 d.136.1.4 (A:318-505) 27.7 16 0.0012 14.5 3.7 25 119-143 61-85 (188) 43 d2d13a1 c.26.2.1 (A:2-227) Hyp 26.9 17 0.0012 14.4 4.8 46 106-156 81-130 (226) 44 d1vsra_ c.52.1.15 (A:) Very sh 26.5 9.2 0.00067 16.1 0.8 14 4-17 33-46 (134) 45 d1pt6a_ c.62.1.1 (A:) Integrin 26.2 17 0.0013 14.3 4.6 64 98-161 79-163 (192) 46 d1ua7a2 c.1.8.1 (A:4-347) Bact 26.2 18 0.0013 14.3 2.3 16 63-78 77-92 (344) 47 d1j5xa_ c.80.1.1 (A:) Hypothet 25.6 18 0.0013 14.3 5.1 46 115-166 90-138 (329) 48 d2qrra1 d.58.18.13 (A:2-98) Me 25.2 18 0.0013 14.2 4.8 29 115-143 65-94 (97) 49 d1ijba_ c.62.1.1 (A:) von Will 24.2 19 0.0014 14.1 5.7 43 115-160 118-167 (202) 50 d2fdra1 c.108.1.6 (A:3-224) Hy 24.1 19 0.0014 14.1 4.4 56 117-174 161-218 (222) 51 d1ul1x2 c.120.1.2 (X:2-217) Fl 23.9 19 0.0014 14.1 5.0 61 96-174 156-216 (216) 52 d1ebda1 c.3.1.5 (A:7-154,A:272 23.9 19 0.0014 14.1 3.8 12 69-80 100-111 (223) 53 d2dria_ c.93.1.1 (A:) D-ribose 23.1 20 0.0015 14.0 8.6 81 55-145 134-215 (271) 54 d3grsa1 c.3.1.5 (A:18-165,A:29 22.8 20 0.0015 13.9 3.8 15 113-127 132-146 (221) 55 d1jyea_ c.93.1.1 (A:) Lac-repr 22.8 20 0.0015 13.9 7.9 80 53-145 127-213 (271) 56 d2bkfa1 d.15.2.2 (A:1-85) Next 22.4 21 0.0015 13.9 3.8 29 115-143 54-82 (85) 57 d2d3na2 c.1.8.1 (A:5-398) Bact 22.2 21 0.0015 13.9 3.0 20 60-79 78-97 (394) 58 d1mxga2 c.1.8.1 (A:1-361) Bact 22.0 21 0.0015 13.8 3.0 23 121-143 85-107 (361) 59 d1k92a1 c.26.2.1 (A:1-188) Arg 22.0 21 0.0015 13.8 5.2 39 4-54 9-48 (188) 60 d1mf7a_ c.62.1.1 (A:) Integrin 21.9 21 0.0015 13.8 3.5 47 114-160 108-161 (194) 61 g1f2t.1 c.37.1.12 (A:,B:) Rad5 21.9 21 0.0015 13.9 1.9 35 125-167 246-280 (292) 62 d1g94a2 c.1.8.1 (A:1-354) Bact 21.9 21 0.0015 13.8 3.0 19 61-79 65-83 (354) 63 d1gcya2 c.1.8.1 (A:1-357) G4-a 21.8 21 0.0015 13.8 3.0 17 63-79 95-111 (357) 64 d1aoga1 c.3.1.5 (A:3-169,A:287 21.4 22 0.0016 13.8 3.6 10 71-80 115-124 (238) 65 d1xeaa1 c.2.1.3 (A:2-122,A:267 21.3 22 0.0016 13.7 4.1 31 111-141 61-91 (167) 66 d1i36a2 c.2.1.6 (A:1-152) Cons 21.0 19 0.0014 14.2 1.5 51 109-161 53-103 (152) 67 d2jfga2 c.59.1.1 (A:298-437) U 20.9 9.1 0.00066 16.1 -0.1 48 96-143 22-73 (140) 68 d1xdpa3 d.136.1.4 (A:315-501) 20.6 22 0.0016 13.7 3.5 26 119-144 62-87 (187) 69 d1iuka_ c.2.1.8 (A:) Hypotheti 20.6 23 0.0016 13.6 3.7 85 64-161 30-114 (136) 70 d1hx0a2 c.1.8.1 (A:1-403) Anim 20.5 23 0.0016 13.6 3.0 19 61-79 77-95 (403) 71 d1guda_ c.93.1.1 (A:) D-allose 20.2 23 0.0017 13.6 10.0 49 97-146 174-228 (288) No 1 >d1xo1a2 c.120.1.2 (A:19-185) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]} Probab=96.22 E-value=0.019 Score=32.95 Aligned_cols=42 Identities=26% Similarity=0.200 Sum_probs=28.0 Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE Q ss_conf 653299999999942115889998386658999999998498899998 Q gi|254780936|r 96 SSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182) Q Consensus 96 k~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182) -.+|=-|+.=+-.....-+.++|+|||.||..|+. .+|.++. T Consensus 109 ~EADDiIa~l~~~~~~~~~~v~IvS~DkD~~QLv~------~~v~~~~ 150 (167) T d1xo1a2 109 VEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLT------DKVSRFS 150 (167) T ss_dssp BCHHHHHHHHHHHHGGGSSCEEEECSCGGGGGGCB------TTEEEEC T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHEE------CCEEEEE T ss_conf 04366999999986338987999717865888400------9879995 No 2 >d1cmwa2 c.120.1.2 (A:10-173) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]} Probab=96.12 E-value=0.035 Score=31.19 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=35.8 Q ss_pred HHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE Q ss_conf 9998897559569753458953788865435653299999999942115889998386658999999998498899998 Q gi|254780936|r 65 PLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182) Q Consensus 65 ~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182) .....+...|+.+...| .-.+|=-|+.=+-.....-..++|+|+|.||..|+. .+|.++. T Consensus 89 ~~~~~~~~~g~~~~~~~-------------~~EADDvIa~la~~~~~~~~~v~IvS~DkD~~QLv~------~~v~i~~ 148 (164) T d1cmwa2 89 LIKELVDLLGLARLEVP-------------GYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLS------DRIHVLH 148 (164) T ss_dssp HHHHHHHHTTCEEECCT-------------TSCHHHHHHHHHHHHHHTTEEEEEECSSGGGGGSCC------SSCEEEC T ss_pred HHHHHHHHCCCEEEEEC-------------CCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHEE------CCEEEEE T ss_conf 99999751473278741-------------742477888999874332325899627977688422------9889996 No 3 >d1tfra2 c.120.1.2 (A:12-180) T4 RNase H {Bacteriophage T4 [TaxId: 10665]} Probab=95.75 E-value=0.057 Score=29.91 Aligned_cols=57 Identities=28% Similarity=0.196 Sum_probs=36.4 Q ss_pred HHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE Q ss_conf 897559569753458953788865435653299999999942115889998386658999999998498899998 Q gi|254780936|r 69 WLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182) Q Consensus 69 ~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182) .+...|+.+...+ .-.+|=-|+.=+......-+.++|+|||.||..|+. ...|.++. T Consensus 104 ~~~~l~~~~~~~~-------------~~EADDvIa~la~~~~~~~~~vvIvS~DkD~~QLv~-----~~~V~~~~ 160 (169) T d1tfra2 104 LKAYMPYIVMDID-------------KYEADDHIAVLVKKFSLEGHKILIISSDGDFTQLHK-----YPNVKQWS 160 (169) T ss_dssp HHHHSSSEEECCT-------------TCCHHHHHHHHHHHHHHTTCCEEEECCCGGGGGGTT-----STTEEEEE T ss_pred HHHHHHHHCCCCC-------------CCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHCC-----CCCEEEEE T ss_conf 9997543200248-------------844446899999999877994999928978898271-----99859961 No 4 >d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Probab=89.04 E-value=0.68 Score=23.15 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=63.1 Q ss_pred CHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 98999999851792999999730688731467775799988975595697534589537888654356532999999999 Q gi|254780936|r 29 DYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE 108 (182) Q Consensus 29 d~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~ 108 (182) .|+.|.......+.- -..+.....+..++..+..--.+.|..-||++...+ +.+..=++++. T Consensus 21 ~fE~LR~~~~~~g~r--P~v~la~lG~~a~h~ara~f~~n~f~~gGfev~~~~---------------~~~~~e~v~aa- 82 (163) T d7reqb2 21 VFEQLMDRSTSVSER--PKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVE---------------GGTTAEIVEAF- 82 (163) T ss_dssp HHHHHHHHHHHSSSC--CBCEEEECSCHHHHHHHHHHHHHHHHHTTCBCCEEE---------------SCCHHHHHHHH- T ss_pred HHHHHHHHHHHCCCC--CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEECCCC---------------CCCCHHHHHHH- T ss_conf 899999999842899--869987679744300079999999981686015688---------------88948999999- Q ss_pred HHCCCCEEEEECCCHHHHH----HHHHHHHCCCEEEEEEEECCCCCCCHHHHHHH-CCCCEEH Q ss_conf 4211588999838665899----99999984988999983157765470899985-2111518 Q gi|254780936|r 109 QSEGLEHLVIFSGDGCFTT----LVAALQRKVKKVTIVSTVLSDPSMASDQLRRQ-ADYFMDL 166 (182) Q Consensus 109 ~a~~~d~~iLvSGD~Df~p----li~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~-ad~fi~l 166 (182) .....|.++|+|.|.+|.+ +++.||+.|.+..++.-..+.... -..|+++ .|.||.. T Consensus 83 ~~~~a~vvvicssd~~y~~~~~~~~~aLk~ag~~~~vlaGg~~~~~d-~~~l~~aGVd~~i~~ 144 (163) T d7reqb2 83 KKSGAQVADLCSSAKVYAQQGLEVAKALKAAGAKALYLSGAFKEFGD-DAAEAEKLIDGRLFM 144 (163) T ss_dssp HHHTCSEEEEECCHHHHHHHHHHHHHHHHHTTCSEEEEESCGGGGGG-GHHHHHHHCCEEECT T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC-HHHHHHCCCCEEECC T ss_conf 94799889984576104878999999998564560589706888235-999996798768419 No 5 >d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]} Probab=87.66 E-value=0.69 Score=23.10 Aligned_cols=101 Identities=15% Similarity=0.065 Sum_probs=60.4 Q ss_pred HHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 89999998517929999997306887314677757999889755956975345895378886543565329999999994 Q gi|254780936|r 30 YRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ 109 (182) Q Consensus 30 ~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~ 109 (182) +.++.+.+.+.. +.++|+.-. .......+...|...|+.+... .+... .. T Consensus 27 i~~~~~~i~~a~---~I~i~G~G~-----S~~~a~~~~~~l~~lg~~~~~~-----~d~~~-----------------~~ 76 (186) T d1m3sa_ 27 ADQLADHILSSH---QIFTAGAGR-----SGLMAKSFAMRLMHMGFNAHIV-----GEILT-----------------PP 76 (186) T ss_dssp HHHHHHHHHHCS---CEEEECSHH-----HHHHHHHHHHHHHHTTCCEEET-----TSTTC-----------------CC T ss_pred HHHHHHHHHCCC---EEEEEECCH-----HHHHHHHHHHHHHHCCCCCCCC-----CHHHC-----------------CC T ss_conf 999999997299---599997868-----9999999999987356777767-----85443-----------------56 Q ss_pred HCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH Q ss_conf 21158899983866---5899999999849889999831577654708999852111518 Q gi|254780936|r 110 SEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182) Q Consensus 110 a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182) ...=|.+|++|.-| +.+.+++.+|++|.+|+.++-.. ...|.+.||..+.+ T Consensus 77 ~~~~Dl~I~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~------~s~La~~ad~~i~i 130 (186) T d1m3sa_ 77 LAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINP------ESSIGKQADLIIRM 130 (186) T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCT------TSHHHHHCSEEEEC T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCC------CCHHHHHCCEEEEE T ss_conf 8888789984674100323899999998799789995588------74556758888996 No 6 >d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=81.58 E-value=1.6 Score=20.88 Aligned_cols=104 Identities=18% Similarity=0.155 Sum_probs=60.6 Q ss_pred CCCHHHH---HHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHH Q ss_conf 6798999---9998517929999997306887314677757999889755956975345895378886543565329999 Q gi|254780936|r 27 DIDYRKL---LKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELA 103 (182) Q Consensus 27 ~~d~~~L---~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~la 103 (182) .+|+..+ .+.+.+.. +.+.++.- ......+.+...|...|+.+.... +.... T Consensus 24 ~ld~~~i~~~~~~i~~a~---~I~i~G~G-----~S~~~a~~~~~~l~~lg~~~~~~~-----~~~~~------------ 78 (192) T d1vima_ 24 HIDLETVGEMIKLIDSAR---SIFVIGAG-----RSGYIAKAFAMRLMHLGYTVYVVG-----ETVTP------------ 78 (192) T ss_dssp HCCHHHHHHHHHHHHHSS---CEEEECSH-----HHHHHHHHHHHHHHHTTCCEEETT-----STTCC------------ T ss_pred HCCHHHHHHHHHHHHCCC---CEEEEECC-----CCHHHHHHHHHHHCCCCCCCCCCC-----CCCCC------------ T ss_conf 469999999999997299---68999667-----310025666653024465521011-----22335------------ Q ss_pred HHHHHHHCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH Q ss_conf 99999421158899983866---5899999999849889999831577654708999852111518 Q gi|254780936|r 104 VDAFEQSEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182) Q Consensus 104 iD~~~~a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182) ....=|.+|++|.-+ +.+.+++.+|++|.+|+.++-.. ...|.+.||..+.+ T Consensus 79 -----~i~~~Dl~i~iS~sG~t~~~i~~~~~ak~~g~~vI~IT~~~------~s~l~~~ad~~l~i 133 (192) T d1vima_ 79 -----RITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKR------DSSLAKMADVVMVV 133 (192) T ss_dssp -----CCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCT------TSHHHHHCSEEEEC T ss_pred -----CCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECC------CCCCCCCCCEEEEE T ss_conf -----55533300021331110025888999876224414565125------54444445569996 No 7 >d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]} Probab=71.47 E-value=3 Score=19.13 Aligned_cols=97 Identities=21% Similarity=0.173 Sum_probs=53.8 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH-HH-CCCCEEEEECCC Q ss_conf 9999730688731467775799988975595697534589537888654356532999999999-42-115889998386 Q gi|254780936|r 45 RAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE-QS-EGLEHLVIFSGD 122 (182) Q Consensus 45 ~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~-~a-~~~d~~iLvSGD 122 (182) ++....+..................|...|+++..... +..-| +.+.++ .+ ..+|.+|++.|| T Consensus 4 r~~vi~NP~SG~~~~~~~~~~~~~~l~~~~~~~~~~~t------------~~~~~---~~~~~~~~~~~~~d~ivv~GGD 68 (312) T d2qv7a1 4 RARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYAT------------EKIGD---ATLEAERAMHENYDVLIAAGGD 68 (312) T ss_dssp EEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEEC------------CSTTH---HHHHHHHHTTTTCSEEEEEECH T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEC------------CCCCH---HHHHHHHHHHCCCCEEEEECCC T ss_conf 69999876889975799999999999977992899982------------89227---9999998877699889998678 Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHH Q ss_conf 6589999999984988999983157765470899 Q gi|254780936|r 123 GCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQL 156 (182) Q Consensus 123 ~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L 156 (182) |=.-.++..+-+.+.++-+.-...|-.+..|+.| T Consensus 69 GTv~~v~~~l~~~~~~~~l~iiP~GTgN~~ar~l 102 (312) T d2qv7a1 69 GTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRAL 102 (312) T ss_dssp HHHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHT T ss_pred CHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHC T ss_conf 4799999999753556636875368887504422 No 8 >d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=68.50 E-value=3.2 Score=18.97 Aligned_cols=100 Identities=14% Similarity=0.117 Sum_probs=58.4 Q ss_pred HHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 89999998517929999997306887314677757999889755956975345895378886543565329999999994 Q gi|254780936|r 30 YRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ 109 (182) Q Consensus 30 ~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~ 109 (182) ..++.+.+.+.. +.+.|+.. ......+.+...|.+.|+.+.... +.... . T Consensus 27 i~~~~~~i~~a~---~I~~~G~G-----~S~~~a~~~~~~l~~lg~~~~~~~-----~~~~~-----------------~ 76 (177) T d1jeoa_ 27 LDSLIDRIIKAK---KIFIFGVG-----RSGYIGRCFAMRLMHLGFKSYFVG-----ETTTP-----------------S 76 (177) T ss_dssp HHHHHHHHHHCS---SEEEECCH-----HHHHHHHHHHHHHHHTTCCEEETT-----STTCC-----------------C T ss_pred HHHHHHHHHCCC---EEEEEECC-----HHHHHHHHHHHHHHHCCCCCCCCC-----CCCCC-----------------C T ss_conf 999999998799---39999756-----899999999999996597420133-----32345-----------------5 Q ss_pred HCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH Q ss_conf 21158899983866---5899999999849889999831577654708999852111518 Q gi|254780936|r 110 SEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182) Q Consensus 110 a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182) ...=|.+|++|.-| +.+.+++.+|++|.+|+.++- .. + .|.+.||..+.+ T Consensus 77 ~~~~Dl~I~iS~sG~t~~~i~~~~~ak~~g~~vI~IT~---~~---~-~l~~~aD~~l~~ 129 (177) T d1jeoa_ 77 YEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVC---EC---G-NVVEFADLTIPL 129 (177) T ss_dssp CCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEES---SC---C-GGGGGCSEEEEC T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEC---CC---C-CHHHHCCCEEEE T ss_conf 67777688713330268999999999875994367736---88---8-679856836998 No 9 >d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio cholerae [TaxId: 666]} Probab=63.18 E-value=4 Score=18.32 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=39.2 Q ss_pred HHHCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH Q ss_conf 9421158899983866---5899999999849889999831577654708999852111518 Q gi|254780936|r 108 EQSEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182) Q Consensus 108 ~~a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182) .+++.=|.+|++|+-| .-+.+++.+|+.|.+|+.++-..+ ..|.+.||.-|.+ T Consensus 107 ~~~~~gDvli~iS~SG~s~~ii~a~~~Ak~~g~~~i~it~~~~------~~l~~~~D~~I~v 162 (191) T d1x94a_ 107 AVGAKGDVLFGLSTSGNSGNILKAIEAAKAKGMKTIALTGKDG------GKMAGLADVEIRV 162 (191) T ss_dssp HHCCTTCEEEEEESSSCCHHHHHHHHHHHHHTCEEEEEEETTC------GGGTTTSSEEEEE T ss_pred HHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEEECCCC------CCCCCCCCEEEEE T ss_conf 8289989899983687542001227999857976999956899------8423438889996 No 10 >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Probab=54.06 E-value=6 Score=17.23 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=6.0 Q ss_pred HHHCCCEEEEE Q ss_conf 97559569753 Q gi|254780936|r 70 LHYNGFQVVAK 80 (182) Q Consensus 70 l~~~g~~v~~~ 80 (182) +...|++++.. T Consensus 109 ~~~~gV~vi~G 119 (229) T d3lada1 109 IKANGVTLFEG 119 (229) T ss_dssp HHHHTCEEEES T ss_pred HHCCCEEEEEE T ss_conf 64388579974 No 11 >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} Probab=51.62 E-value=3.1 Score=19.00 Aligned_cols=33 Identities=9% Similarity=0.024 Sum_probs=28.5 Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE Q ss_conf 421158899983866589999999984988999 Q gi|254780936|r 109 QSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTI 141 (182) Q Consensus 109 ~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v 141 (182) ..+++|.+++.|+..-..+.+..+-+.|+.|+. T Consensus 55 ~~~~~D~Vvi~tp~~~h~~~a~~aL~aG~~vv~ 87 (170) T d1f06a1 55 HADDVDVLFLCMGSATDIPEQAPKFAQFACTVD 87 (170) T ss_dssp TTTTCSEEEECSCTTTHHHHHHHHHTTTSEEEC T ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE T ss_conf 435665589947872369999999978980998 No 12 >d1kjna_ c.115.1.1 (A:) Hypothetical protein MTH777 (MT0777) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=50.86 E-value=7 Score=16.81 Aligned_cols=81 Identities=14% Similarity=0.091 Sum_probs=47.0 Q ss_pred HHHHHHHHHHHCCCEEEEEE------EEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCC-EEEEECCCHHHHHHHHHHHH Q ss_conf 75799988975595697534------589537888654356532999999999421158-89998386658999999998 Q gi|254780936|r 62 PLHPLLDWLHYNGFQVVAKV------AKEFTENCGRKRVKSSMDVELAVDAFEQSEGLE-HLVIFSGDGCFTTLVAALQR 134 (182) Q Consensus 62 ~~~~~~~~l~~~g~~v~~~~------~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d-~~iLvSGD~Df~pli~~lr~ 134 (182) ........|+..|+++...- +.+..|+.+. ..++-+|..=++.-+.- ..+| ++.++.+|+-...++..-.- T Consensus 19 ~~lyl~~~Lk~kG~~v~Va~npAA~kLievaDPek~-Yl~~~vdld~~i~~i~e-~d~d~~~~F~HNDAgv~Ya~T~~~~ 96 (152) T d1kjna_ 19 LAIYTSHKLKKKGFRVTVTANPAALRLVQVADPEGI-YTDEMVDLESCINELAE-GDYEFLAGFVPNDAAAAYLVTFAGI 96 (152) T ss_dssp HHHHHHHHHHHTTCEEEEEECHHHHHHHHHHSTTCC-SCSEEEEHHHHHHHCCT-TSCSEEEEEESSHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCH-HHHCCCCHHHHHHHHHH-CCCCEEEEEEECCHHHHHHHHHHHH T ss_conf 999999998756971699559899757652286520-23142369888655651-6776699995064157899999987 Q ss_pred CCCEEEEEEE Q ss_conf 4988999983 Q gi|254780936|r 135 KVKKVTIVST 144 (182) Q Consensus 135 ~Gk~V~v~~~ 144 (182) ...+...+.| T Consensus 97 ~~~~~~aiVF 106 (152) T d1kjna_ 97 LNTETLAIIF 106 (152) T ss_dssp HCSEEEEEEE T ss_pred HCCCEEEEEE T ss_conf 1776289982 No 13 >d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]} Probab=49.40 E-value=7.4 Score=16.67 Aligned_cols=88 Identities=14% Similarity=0.156 Sum_probs=50.6 Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC----CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH Q ss_conf 14677757999889755956975345895378----88654356532999999999421158899983866589999999 Q gi|254780936|r 57 EQQFSPLHPLLDWLHYNGFQVVAKVAKEFTEN----CGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAAL 132 (182) Q Consensus 57 ~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~----~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~l 132 (182) +...........+|...|+++..........+ ........+..+.....--+.++.+|.+|.+-|||=|..++... T Consensus 12 ~~a~~~a~~i~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~lGGDGT~L~a~~~~ 91 (302) T d1u0ta_ 12 DEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGGDGTFLRAAELA 91 (302) T ss_dssp GGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEECHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHH T ss_conf 89999999999999978998999842000146444571134322764211355323334655899975873999999974 Q ss_pred HHCCCEEEEEEE Q ss_conf 984988999983 Q gi|254780936|r 133 QRKVKKVTIVST 144 (182) Q Consensus 133 r~~Gk~V~v~~~ 144 (182) ...++.|..+.. T Consensus 92 ~~~~~PilGin~ 103 (302) T d1u0ta_ 92 RNASIPVLGVNL 103 (302) T ss_dssp HHHTCCEEEEEC T ss_pred HCCCCEEEEECC T ss_conf 003982898378 No 14 >d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]} Probab=47.72 E-value=7.9 Score=16.50 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=21.5 Q ss_pred HHHHHHHHHHH--CCCEEEEEEEECCCCCCCHHHHHHHCCCCEEHHH Q ss_conf 58999999998--4988999983157765470899985211151899 Q gi|254780936|r 124 CFTTLVAALQR--KVKKVTIVSTVLSDPSMASDQLRRQADYFMDLAY 168 (182) Q Consensus 124 Df~pli~~lr~--~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l~~ 168 (182) .|...+..+-. .+..+.+.. +....+=.+..+.|...-.++. T Consensus 137 ~f~~~~~~~~~~~~~~~~~i~~---P~~~~tK~EI~~~~~~~~~l~~ 180 (230) T d2pg3a1 137 EFVKALNQAIVLGIARDIRFET---PLMWLNKAETWALADYYQQLDT 180 (230) T ss_dssp HHHHHHHHHHHHHHTSCCEEEC---TTTTCCHHHHHHHHHHTTCHHH T ss_pred HHHHHHHHHHHHCCCCCCEEEE---EEECCCHHHHHHHHHHCCCCCC T ss_conf 6899999887751566532686---4315889999999876056564 No 15 >d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]} Probab=47.52 E-value=7.9 Score=16.48 Aligned_cols=77 Identities=18% Similarity=0.078 Sum_probs=44.4 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH----CCCCEEEEE-CCCHHHHHHHHHHH Q ss_conf 6777579998897559569753458953788865435653299999999942----115889998-38665899999999 Q gi|254780936|r 59 QFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS----EGLEHLVIF-SGDGCFTTLVAALQ 133 (182) Q Consensus 59 ~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a----~~~d~~iLv-SGD~Df~pli~~lr 133 (182) ...+...|.++++..++........ ...+.|..-+..+++.. +..+..+++ ++|.--..+++.++ T Consensus 147 ~~~R~~g~~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~a~g~~~Al~ 216 (305) T d8abpa_ 147 ARRRTTGSMDALKAAGFPEKQIYQV----------PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 216 (305) T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEE----------ECSSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEE----------CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 9999999999999852145433101----------147752034677788640247876643123310688998788998 Q ss_pred HCCC---EEEEEEEE Q ss_conf 8498---89999831 Q gi|254780936|r 134 RKVK---KVTIVSTV 145 (182) Q Consensus 134 ~~Gk---~V~v~~~~ 145 (182) +.|. .+.++++. T Consensus 217 ~~G~~~~~i~~vg~d 231 (305) T d8abpa_ 217 GQGFKAADIIGIGIN 231 (305) T ss_dssp HTTCCGGGEEEEEES T ss_pred HHHCCCCCCEEEEEC T ss_conf 754147885499856 No 16 >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} Probab=46.90 E-value=6.8 Score=16.90 Aligned_cols=73 Identities=7% Similarity=0.066 Sum_probs=43.9 Q ss_pred HHHHHHCCCCEEEEECCCHH------HHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCC-CCEEHHHHHHHHCCCC Q ss_conf 99994211588999838665------8999999998498899998315776547089998521-1151899787622583 Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGC------FTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQAD-YFMDLAYLKNEIARDP 177 (182) Q Consensus 105 D~~~~a~~~d~~iLvSGD~D------f~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad-~fi~l~~l~~~i~r~~ 177 (182) +..+...++|.+|..||... .+......|..++...++=. +.+.++...+.+..+ ..+++|+|....++.- T Consensus 77 ~~~~~l~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDl--avPr~vd~~v~~~~~v~l~~ld~l~~~~~~n~ 154 (159) T d1gpja2 77 ELVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDI--ANPRDVEEGVENIEDVEVRTIDDLRVIARENL 154 (159) T ss_dssp GHHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEEC--CSSCSBCTTGGGSTTEEEEEHHHHHHHHHHHH T ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEEE--CCCCCCCHHHHCCCCEEEEEHHHHHHHHHHHH T ss_conf 5787735489999924898764127666899872025798589960--47888686560569829986899999999999 Q ss_pred CC Q ss_conf 11 Q gi|254780936|r 178 DE 179 (182) Q Consensus 178 ~~ 179 (182) .+ T Consensus 155 ~~ 156 (159) T d1gpja2 155 ER 156 (159) T ss_dssp HH T ss_pred HH T ss_conf 98 No 17 >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Probab=43.44 E-value=8.6 Score=16.27 Aligned_cols=14 Identities=21% Similarity=0.181 Sum_probs=8.0 Q ss_pred HHHHHHCCCEEEEE Q ss_conf 98897559569753 Q gi|254780936|r 67 LDWLHYNGFQVVAK 80 (182) Q Consensus 67 ~~~l~~~g~~v~~~ 80 (182) ...+.+.|+++... T Consensus 98 ~~~l~~~gV~v~~~ 111 (217) T d1gesa1 98 ENVLGKNNVDVIKG 111 (217) T ss_dssp HHHHHHTTCEEEES T ss_pred HHHHHCCEEEEEEE T ss_conf 99973781899863 No 18 >d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Probab=43.14 E-value=9.3 Score=16.06 Aligned_cols=18 Identities=11% Similarity=-0.199 Sum_probs=7.0 Q ss_pred CCCHHHHHH-HHHHHHCCC Q ss_conf 386658999-999998498 Q gi|254780936|r 120 SGDGCFTTL-VAALQRKVK 137 (182) Q Consensus 120 SGD~Df~pl-i~~lr~~Gk 137 (182) -|.+.++.. .+.+++.|. T Consensus 231 gg~~~l~~~l~~~~~~~g~ 249 (336) T d1d5ta1 231 YGLGELPQGFARLSAIYGG 249 (336) T ss_dssp TCTTHHHHHHHHHHHHHTC T ss_pred CCHHHHHHHHHHHHHHHCC T ss_conf 9619999999999997416 No 19 >d1a9xb1 c.8.3.1 (B:1502-1652) Carbamoyl phosphate synthetase, small subunit N-terminal domain {Escherichia coli [TaxId: 562]} Probab=43.07 E-value=9.3 Score=16.06 Aligned_cols=60 Identities=8% Similarity=0.130 Sum_probs=30.2 Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH Q ss_conf 46777579998897559569753458953788865435653299999999942115889998386658999999998 Q gi|254780936|r 58 QQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQR 134 (182) Q Consensus 58 ~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~ 134 (182) .+|.....+.++|+.+++-.+ .++|.+..+-.++.....-..|..+.+.|...+++++|+ T Consensus 89 Sn~rs~~sL~~~L~~~~IpgI-----------------~gIDTRaLtr~iR~~G~~~g~I~~~~~~d~~~~~~k~k~ 148 (151) T d1a9xb1 89 SNFRNTEDLSSYLKRHNIVAI-----------------ADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARA 148 (151) T ss_dssp CCTTCCSCHHHHHHHTTCEEE-----------------ESSCHHHHHHHHHHHCCEEEEEEESSSCCHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHCCCCCC-----------------CCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHC T ss_conf 832134899999997077544-----------------656789999999866981289964899999999999970 No 20 >d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Probab=42.96 E-value=9.3 Score=16.04 Aligned_cols=45 Identities=20% Similarity=0.088 Sum_probs=32.0 Q ss_pred CEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCC Q ss_conf 8899983866---58999999998498899998315776547089998521 Q gi|254780936|r 114 EHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQAD 161 (182) Q Consensus 114 d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad 161 (182) ..+||+|.+. +...+++.+|+.|.+|.++++.... -..+|+..+. T Consensus 107 kvvvlltdg~~~d~~~~~a~~lk~~gi~v~~igiG~~~---~~~~L~~ias 154 (184) T d1atza_ 107 KAVVILVTDVSVDSVDAAADAARSNRVTVFPIGIGDRY---DAAQLRILAG 154 (184) T ss_dssp EEEEEEECSCCSSCCHHHHHHHHHTTEEEEEEEESSSS---CHHHHHHHTG T ss_pred EEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCC---CHHHHHHHHC T ss_conf 59999980676530668999999759589999958859---9999999857 No 21 >d1wdea_ c.90.1.1 (A:) Diphthine synthase, DphB {Aeropyrum pernix [TaxId: 56636]} Probab=41.84 E-value=9.7 Score=15.94 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=28.8 Q ss_pred HHHHHHCCCCEEEEECCCHHH----HHHHHHHHHCCCEEEEE Q ss_conf 999942115889998386658----99999999849889999 Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGCF----TTLVAALQRKVKKVTIV 142 (182) Q Consensus 105 D~~~~a~~~d~~iLvSGD~Df----~pli~~lr~~Gk~V~v~ 142 (182) .+++.+..-++++|++||--+ ..++.++++.|..|.++ T Consensus 71 ~i~~~a~~~~va~L~~GDP~i~~~~~~l~~~~~~~gi~v~vI 112 (289) T d1wdea_ 71 EIVSRALDAVVAVVTAGDPMVATTHSSLAAEALEAGVAVRYI 112 (289) T ss_dssp HHTCCSSCCEEEEEESBCTTSSSSHHHHHHHHHHTTCEEEEE T ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEE T ss_conf 999985579839996899861464999999998659728998 No 22 >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=40.27 E-value=10 Score=15.79 Aligned_cols=26 Identities=8% Similarity=-0.124 Sum_probs=14.6 Q ss_pred EEEEE-CCCHHHHH-HHHHHHHCCCEEE Q ss_conf 89998-38665899-9999998498899 Q gi|254780936|r 115 HLVIF-SGDGCFTT-LVAALQRKVKKVT 140 (182) Q Consensus 115 ~~iLv-SGD~Df~p-li~~lr~~Gk~V~ 140 (182) .+... -|-+.++. +++.+++.|.++. T Consensus 227 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~ 254 (297) T d2bcgg1 227 PYLYPMYGLGELPQGFARLSAIYGGTYM 254 (297) T ss_dssp SEEEETTCTTHHHHHHHHHHHHTTCEEE T ss_pred CCEECCCCHHHHHHHHHHHHHHCCCEEE T ss_conf 6202058577999999999996699999 No 23 >d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643 {Thermotoga maritima [TaxId: 2336]} Probab=39.80 E-value=9.8 Score=15.90 Aligned_cols=52 Identities=8% Similarity=0.076 Sum_probs=33.5 Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCC Q ss_conf 2115889998386658999999998498899998315776547089998521 Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQAD 161 (182) Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad 161 (182) .+.+|.+|.+++-.=..+.+..+-+.|+.|++.+...=.....-.+|.+.|- T Consensus 48 ~~~~DiVve~t~~~~~~~~~~~aL~~gk~vvi~s~~~lad~~~~~~l~~~A~ 99 (132) T d1j5pa4 48 PSDVSTVVECASPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELK 99 (132) T ss_dssp CTTCCEEEECSCHHHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHH T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCHHHCCHHHHHHHHHHHH T ss_conf 6788889962763528999999996179889953604304269999999999 No 24 >d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} Probab=39.59 E-value=11 Score=15.72 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=40.3 Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHHHHCCC Q ss_conf 79998897559569753458953788865435653299999999942--115889998386658999999998498 Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSGDGCFTTLVAALQRKVK 137 (182) Q Consensus 64 ~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSGD~Df~pli~~lr~~Gk 137 (182) +.....|++.|+++..... +..-| +.++.+.+ ..+|.+|++.|||=.-.++.-+-+... T Consensus 18 ~~~~~~l~~~g~~~~v~~T------------~~~g~---a~~~~~~~~~~~~d~Ivv~GGDGTv~ev~~gl~~~~~ 78 (295) T d2bona1 18 REAIMLLREEGMTIHVRVT------------WEKGD---AARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEG 78 (295) T ss_dssp HHHHHHHHTTTCCEEEEEC------------CSTTH---HHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHCCS T ss_pred HHHHHHHHHCCCEEEEEEC------------CCCCH---HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCC T ss_conf 9999999978997999981------------88345---9999999986699789997798279899987875067 No 25 >d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]} Probab=38.45 E-value=11 Score=15.61 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=34.8 Q ss_pred CHHHHHHHHHHH--------HCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 329999999994--------21158899983866589999999984988999983 Q gi|254780936|r 98 MDVELAVDAFEQ--------SEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVST 144 (182) Q Consensus 98 ~Dv~laiD~~~~--------a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~ 144 (182) -||.=|+|.+.. +.+.+.+|. -|.+..+.+.++|+.||++.+++- T Consensus 157 ~dv~~av~~~h~~G~l~~~v~~np~kYv~--k~~~l~~~L~~lr~~GKklFLiTN 209 (458) T d2bdea1 157 QDVQYCVDKVHSDGTLKNIIIKNLKKYVI--REKEVVEGLKHFIRYGKKIFILTN 209 (458) T ss_dssp HHHHHHHHHHHHHSHHHHHHHTCTTTSEE--CCHHHHHHHHHHHTTTCEEEEECS T ss_pred HHHHHHHHHHCCCCCCHHHHHHCHHHHHC--CCHHHHHHHHHHHHCCCEEEEEEC T ss_conf 99999987543777311777639797601--786479999999972976999726 No 26 >d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} Probab=37.66 E-value=9.4 Score=16.03 Aligned_cols=12 Identities=25% Similarity=0.312 Sum_probs=9.0 Q ss_pred CCCEEEEEEEHH Q ss_conf 887189998078 Q gi|254780936|r 4 PREKIALFIDGA 15 (182) Q Consensus 4 ~~~rvaIfID~~ 15 (182) ..+|+.|.|=|+ T Consensus 5 ~~KkIllgvTGs 16 (183) T d1p3y1_ 5 KDKKLLIGICGS 16 (183) T ss_dssp GGCEEEEEECSC T ss_pred CCCEEEEEEECH T ss_conf 898799998088 No 27 >d3ceda1 d.58.18.13 (A:247-341) Methionine import ATP-binding protein MetN2 {Staphylococcus aureus [TaxId: 1280]} Probab=36.12 E-value=12 Score=15.38 Aligned_cols=29 Identities=10% Similarity=0.137 Sum_probs=24.5 Q ss_pred EEEEECC-CH-HHHHHHHHHHHCCCEEEEEE Q ss_conf 8999838-66-58999999998498899998 Q gi|254780936|r 115 HLVIFSG-DG-CFTTLVAALQRKVKKVTIVS 143 (182) Q Consensus 115 ~~iLvSG-D~-Df~pli~~lr~~Gk~V~v~~ 143 (182) -++-++| |. +.-.++..|+++|.+|+|+. T Consensus 63 Liv~l~G~~~~~i~~ai~~L~~~~v~vEVi~ 93 (95) T d3ceda1 63 LVLHIPYISSVDFGKFEKELIERQVKMEVLR 93 (95) T ss_dssp EEEEESCCCHHHHHHHHHHHHHTTCEEEEEE T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEC T ss_conf 9999866998999999999998698899936 No 28 >d1r8ja2 c.23.1.5 (A:1-135) N-terminal domain of the circadian clock protein KaiA {Synechococcus elongatus [TaxId: 32046]} Probab=36.08 E-value=12 Score=15.38 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=31.2 Q ss_pred HHHHHHHH-CCCCEEEEECCCHHHHHHHHHHHHCCCE--EEEEE Q ss_conf 99999942-1158899983866589999999984988--99998 Q gi|254780936|r 103 AVDAFEQS-EGLEHLVIFSGDGCFTTLVAALQRKVKK--VTIVS 143 (182) Q Consensus 103 aiD~~~~a-~~~d~~iLvSGD~Df~pli~~lr~~Gk~--V~v~~ 143 (182) -++.++.- ..+|+.||+..+.+.-++.+.|.+.|.- +++++ T Consensus 40 f~~~le~~~e~iDcLVl~~~~~~l~~l~~qL~~~GlLlPaViv~ 83 (135) T d1r8ja2 40 LLEYAQTHRDQIDCLILVAANPSFRAVVQQLCFEGVVVPAIVVG 83 (135) T ss_dssp HHHHHHHSTTSCSEEEEETTSTTHHHHHHHHHHTTCCCCEEEES T ss_pred HHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEE T ss_conf 99999857236777999724876379999998668444689982 No 29 >d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Campylobacter jejuni [TaxId: 197]} Probab=32.83 E-value=13 Score=15.05 Aligned_cols=52 Identities=10% Similarity=-0.028 Sum_probs=37.5 Q ss_pred HHCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH Q ss_conf 421158899983866---5899999999849889999831577654708999852111518 Q gi|254780936|r 109 QSEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182) Q Consensus 109 ~a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182) +.+.=|.+|.+|+-+ -.+.+++.++++|.+|+.++-..+ ..|.+.||.-+.+ T Consensus 107 ~~~~gDili~iS~SG~S~nii~a~~~Ak~~g~~ti~ltg~~~------~~l~~~~D~~i~i 161 (188) T d1tk9a_ 107 LGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGG------GMMNKLCDHNLVV 161 (188) T ss_dssp HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGG------TTHHHHCSEEEEE T ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCEEEEEECCCC------CHHHHHCCEEEEE T ss_conf 368884799953798881268888999851153899807997------3568758998997 No 30 >d2deka1 c.90.1.1 (A:1-265) Diphthine synthase, DphB {Pyrococcus horikoshii [TaxId: 53953]} Probab=32.09 E-value=14 Score=14.97 Aligned_cols=35 Identities=11% Similarity=0.113 Sum_probs=25.0 Q ss_pred HHCCCCEEEEECCCH----HHHHHHHHHHHCCCEEEEEE Q ss_conf 421158899983866----58999999998498899998 Q gi|254780936|r 109 QSEGLEHLVIFSGDG----CFTTLVAALQRKVKKVTIVS 143 (182) Q Consensus 109 ~a~~~d~~iLvSGD~----Df~pli~~lr~~Gk~V~v~~ 143 (182) .+..-++++|.+||- =+..+++.+++.|..|.++- T Consensus 74 ~~~g~~V~~l~~GDP~~~~~~~~l~~~~~~~~i~vevvP 112 (265) T d2deka1 74 LAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIH 112 (265) T ss_dssp HHTTSEEEEEESBCTTTTSSTHHHHHHHHHTTCEEEEEC T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEECC T ss_conf 976998899966854200139999999996477755457 No 31 >d1jx7a_ c.114.1.1 (A:) Hypothetical protein YchN {Escherichia coli [TaxId: 562]} Probab=32.08 E-value=14 Score=14.97 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=14.6 Q ss_pred HHHHHHHHHHHHCCCEEEEEEE Q ss_conf 6589999999984988999983 Q gi|254780936|r 123 GCFTTLVAALQRKVKKVTIVST 144 (182) Q Consensus 123 ~Df~pli~~lr~~Gk~V~v~~~ 144 (182) .++...++.+.+.|.++.++.. T Consensus 59 ~~~~~~l~~l~~~gv~v~vC~~ 80 (117) T d1jx7a_ 59 YNIQQMLEILTAQNVPVKLCKT 80 (117) T ss_dssp CCHHHHHHHHHHTTCCEEEEHH T ss_pred CCHHHHHHHHHHCCCEEEEEHH T ss_conf 5589999999977988999778 No 32 >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Probab=31.97 E-value=14 Score=14.96 Aligned_cols=13 Identities=15% Similarity=0.092 Sum_probs=7.2 Q ss_pred HHHHHCCCEEEEE Q ss_conf 8897559569753 Q gi|254780936|r 68 DWLHYNGFQVVAK 80 (182) Q Consensus 68 ~~l~~~g~~v~~~ 80 (182) ..+...+.+++.. T Consensus 101 ~~~~~~~v~~i~~ 113 (221) T d1dxla1 101 GLFKKNKVTYVKG 113 (221) T ss_dssp HHHHHHTCEEEES T ss_pred HHHHCCCEEEEEE T ss_conf 7643388599993 No 33 >d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Probab=31.86 E-value=14 Score=14.95 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=25.5 Q ss_pred CCCCEEEEECC-------------------CHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 11588999838-------------------66589999999984988999983 Q gi|254780936|r 111 EGLEHLVIFSG-------------------DGCFTTLVAALQRKVKKVTIVST 144 (182) Q Consensus 111 ~~~d~~iLvSG-------------------D~Df~pli~~lr~~Gk~V~v~~~ 144 (182) ..||.++|--| |.+...+++...+.||.+..++. T Consensus 84 ~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~ 136 (217) T d1vhqa_ 84 AELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCI 136 (217) T ss_dssp GGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETT T ss_pred HHCCEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEECH T ss_conf 47878996698663777765210242122289999999999986997999886 No 34 >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=30.09 E-value=15 Score=14.81 Aligned_cols=14 Identities=7% Similarity=-0.287 Sum_probs=7.4 Q ss_pred HHHHHHCCCEEEEE Q ss_conf 98897559569753 Q gi|254780936|r 67 LDWLHYNGFQVVAK 80 (182) Q Consensus 67 ~~~l~~~g~~v~~~ 80 (182) ...|...+++++.. T Consensus 108 ~~~l~~~~V~vi~G 121 (235) T d1h6va1 108 RVALREKKVVYENA 121 (235) T ss_dssp HHHHHHHTCEEECC T ss_pred HHHHHCCCCEEEEE T ss_conf 66664368449976 No 35 >d1wd7a_ c.113.1.1 (A:) Probable uroporphyrinogen-III synthase {Thermus thermophilus [TaxId: 274]} Probab=29.91 E-value=15 Score=14.74 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=10.9 Q ss_pred HHHHHHHHCCCEEEEEEEE Q ss_conf 9998897559569753458 Q gi|254780936|r 65 PLLDWLHYNGFQVVAKVAK 83 (182) Q Consensus 65 ~~~~~l~~~g~~v~~~~~~ 83 (182) .+.+.|...|+++...++. T Consensus 138 ~L~~~L~~~G~~v~~v~~Y 156 (254) T d1wd7a_ 138 LLENALAERGYRVLPLMPY 156 (254) T ss_dssp HHHHHHHHTTEEEEEECSE T ss_pred HHHHHHHHCCCCCEEEEEE T ss_conf 9999997366764699986 No 36 >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} Probab=29.87 E-value=15 Score=14.74 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=27.5 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEE Q ss_conf 1158899983866589999999984988999 Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTI 141 (182) Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v 141 (182) .++|.++++|-.+...+.+..+-+.||.|.+ T Consensus 60 ~~~D~V~I~tp~~~h~~~~~~al~~gk~V~~ 90 (164) T d1tlta1 60 ASCDAVFVHSSTASHFDVVSTLLNAGVHVCV 90 (164) T ss_dssp TTCSEEEECSCTTHHHHHHHHHHHTTCEEEE T ss_pred HHCCCCCCCCCCHHCCCCCCCCCCCCCEEEC T ss_conf 2012112343110001233112232200120 No 37 >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} Probab=29.82 E-value=15 Score=14.73 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=27.6 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEE Q ss_conf 1158899983866589999999984988999 Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTI 141 (182) Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v 141 (182) +.+|.++|.|.+....+.+..+-+.||.|.+ T Consensus 99 ~~iD~V~I~tp~~~H~~~~~~al~~gk~v~~ 129 (221) T d1h6da1 99 PKIDAVYIILPNSLHAEFAIRAFKAGKHVMC 129 (221) T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTCEEEE T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCHHHHC T ss_conf 3320133123024456688886501111102 No 38 >d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]} Probab=29.67 E-value=15 Score=14.72 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=23.8 Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEE Q ss_conf 9998386658999999998498899998 Q gi|254780936|r 116 LVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182) Q Consensus 116 ~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182) -+.|+||-+.-.+++.+++.|.++.+++ T Consensus 38 ~v~V~~~~~~~~i~~~I~~~Gy~a~lig 65 (66) T d1fe0a_ 38 KVCIESEHSMDTLLATLKKTGKTVSYLG 65 (66) T ss_dssp EEEEEESSCHHHHHHHHHTTTSCEEEEE T ss_pred EEEEEEECCHHHHHHHHHHHCCEEEEEE T ss_conf 9999851999999999998599599951 No 39 >d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]} Probab=29.35 E-value=15 Score=14.68 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=34.1 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCC-CCHHHHHH-HCCCCE-EHHHHHHHH Q ss_conf 899983866589999999984988999983157765-47089998-521115-189978762 Q gi|254780936|r 115 HLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPS-MASDQLRR-QADYFM-DLAYLKNEI 173 (182) Q Consensus 115 ~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~-~~S~~L~~-~ad~fi-~l~~l~~~i 173 (182) ..+++.||+ +-=+..+|+.|...+.++. |..+ ..+.+|.+ .||.++ ++.+++..+ T Consensus 316 ~~~~~vGD~--~~D~~aak~Ag~~~Igv~~--G~~g~~~~~el~~~~AD~ii~~~~el~~il 373 (380) T d1qyia_ 316 DDVFIVGDS--LADLLSAQKIGATFIGTLT--GLKGKDAAGELEAHHADYVINHLGELRGVL 373 (380) T ss_dssp TTEEEEESS--HHHHHHHHHHTCEEEEESC--BTTBGGGHHHHHHTTCSEEESSGGGHHHHH T ss_pred CEEEEECCC--HHHHHHHHHCCCCEEEEEC--CCCCCCCHHHHHHCCCCEEECCHHHHHHHH T ss_conf 869998899--8999999987998899945--888864377897679999988999999999 No 40 >d1vhva_ c.90.1.1 (A:) Diphthine synthase, DphB {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=28.80 E-value=16 Score=14.62 Aligned_cols=18 Identities=6% Similarity=-0.145 Sum_probs=8.7 Q ss_pred HHHHHHHHHCCCEEEEEE Q ss_conf 799988975595697534 Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKV 81 (182) Q Consensus 64 ~~~~~~l~~~g~~v~~~~ 81 (182) ......+...|+.+...| T Consensus 93 ~~l~~~~~~~gi~vevvP 110 (251) T d1vhva_ 93 SAIKLEAERKGVKTRIIH 110 (251) T ss_dssp HHHHHHHHHTTCCEEEEC T ss_pred HHHHHHHHHCCCCCEEEE T ss_conf 899999997599867995 No 41 >d1x92a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Pseudomonas aeruginosa [TaxId: 287]} Probab=27.88 E-value=16 Score=14.52 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=29.1 Q ss_pred HHCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEE Q ss_conf 421158899983866---589999999984988999983 Q gi|254780936|r 109 QSEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVST 144 (182) Q Consensus 109 ~a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~ 144 (182) +++.=|.+|.+|+.+ ..+.+++.++++|.+|+.++- T Consensus 107 ~~~~gDvli~iS~SG~S~nvi~a~~~Ak~~g~~~i~ltG 145 (194) T d1x92a_ 107 LGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTG 145 (194) T ss_dssp HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEC T ss_pred HCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEE T ss_conf 568995899996688851357999998753846999982 No 42 >d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]} Probab=27.67 E-value=16 Score=14.50 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=10.9 Q ss_pred ECCCHHHHHHHHHHHHCCCEEEEEE Q ss_conf 8386658999999998498899998 Q gi|254780936|r 119 FSGDGCFTTLVAALQRKVKKVTIVS 143 (182) Q Consensus 119 vSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182) ++++|-.+.++..+-+.||+|.++. T Consensus 61 ~a~~S~Ii~aLi~AA~nGK~Vtv~v 85 (188) T d2o8ra3 61 VAENSSIISALEAAAQSGKKVSVFV 85 (188) T ss_dssp CCSCCHHHHHHHHHHHTTCEEEEEE T ss_pred ECCCCHHHHHHHHHHHCCCEEEEEE T ss_conf 2697469999999997698799998 No 43 >d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=26.89 E-value=17 Score=14.41 Aligned_cols=46 Identities=17% Similarity=-0.078 Sum_probs=21.4 Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHH----HHHCCCEEEEEEEECCCCCCCHHHH Q ss_conf 99942115889998386658999999----9984988999983157765470899 Q gi|254780936|r 106 AFEQSEGLEHLVIFSGDGCFTTLVAA----LQRKVKKVTIVSTVLSDPSMASDQL 156 (182) Q Consensus 106 ~~~~a~~~d~~iLvSGD~Df~pli~~----lr~~Gk~V~v~~~~~~~~~~~S~~L 156 (182) +......+..-.+++||=+-...-.+ +++.|.++.. +.|+.-..+| T Consensus 81 l~~~l~~~~v~~vv~Gdi~~~~~r~r~e~~c~~~gl~~~~-----PLW~~d~~~l 130 (226) T d2d13a1 81 LKNVLEGLKVDGIVAGALASRYQKERIENVARELGLKVYT-----PAWEKDPYQY 130 (226) T ss_dssp HHHHHHTBCCSEEECCCSSCHHHHHHHHHHHHHHTCEEEC-----TTTTCCHHHH T ss_pred HHHHHHHCCCCCEEECCEECHHHHHHHHHHHHHCCCEEEE-----CCCCCCHHHH T ss_conf 9999986072536761000388899998668765948982-----3568898999 No 44 >d1vsra_ c.52.1.15 (A:) Very short patch repair (VSR) endonuclease {Escherichia coli [TaxId: 562]} Probab=26.51 E-value=9.2 Score=16.08 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=10.8 Q ss_pred CCCEEEEEEEHHHH Q ss_conf 88718999807899 Q gi|254780936|r 4 PREKIALFIDGANL 17 (182) Q Consensus 4 ~~~rvaIfID~~Nl 17 (182) |..|++|||||... T Consensus 33 ~~~k~aIfvdGcFW 46 (134) T d1vsra_ 33 DEYRCVIFTHGCFW 46 (134) T ss_dssp GGGTEEEEEECTTT T ss_pred CCCCEEEEECCCCC T ss_conf 37638999717403 No 45 >d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Probab=26.20 E-value=17 Score=14.33 Aligned_cols=64 Identities=13% Similarity=0.182 Sum_probs=36.0 Q ss_pred CHHHHHHHHHHH-----H----CCC-CEEEEEC-CC----HHHHHHHHHHHHCCCEEEEEEEECCCCCC------CHHHH Q ss_conf 329999999994-----2----115-8899983-86----65899999999849889999831577654------70899 Q gi|254780936|r 98 MDVELAVDAFEQ-----S----EGL-EHLVIFS-GD----GCFTTLVAALQRKVKKVTIVSTVLSDPSM------ASDQL 156 (182) Q Consensus 98 ~Dv~laiD~~~~-----a----~~~-d~~iLvS-GD----~Df~pli~~lr~~Gk~V~v~~~~~~~~~~------~S~~L 156 (182) .....+++.... . ++. ..+||+| |. .+...+++.+|+.|.+|..+++..+.... ...+| T Consensus 79 ~~~~~al~~~~~~~~~~~~g~R~~~~kviillTDG~~~d~~~~~~~a~~lk~~gi~v~~igvg~~~~~~~~~~~~~~~~L 158 (192) T d1pt6a_ 79 TMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEI 158 (192) T ss_dssp CCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSHHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHH T ss_conf 01578987777763012358988861589999668877630269999999977996999997055554543431369999 Q ss_pred HHHCC Q ss_conf 98521 Q gi|254780936|r 157 RRQAD 161 (182) Q Consensus 157 ~~~ad 161 (182) +..|. T Consensus 159 ~~IAs 163 (192) T d1pt6a_ 159 KSIAS 163 (192) T ss_dssp HHHSC T ss_pred HHHHC T ss_conf 99866 No 46 >d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} Probab=26.17 E-value=18 Score=14.33 Aligned_cols=16 Identities=13% Similarity=0.214 Sum_probs=7.7 Q ss_pred HHHHHHHHHHCCCEEE Q ss_conf 5799988975595697 Q gi|254780936|r 63 LHPLLDWLHYNGFQVV 78 (182) Q Consensus 63 ~~~~~~~l~~~g~~v~ 78 (182) .+.+.+++++.|++|+ T Consensus 77 f~~LV~~aH~~Gi~Vi 92 (344) T d1ua7a2 77 FKEMCAAAEEYGIKVI 92 (344) T ss_dssp HHHHHHHHHTTTCEEE T ss_pred HHHHHHHHCCCCEEEE T ss_conf 9999999550560575 No 47 >d1j5xa_ c.80.1.1 (A:) Hypothetical protein TM0813 {Thermotoga maritima [TaxId: 2336]} Probab=25.59 E-value=18 Score=14.26 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=29.1 Q ss_pred EEEEEC--CC-HHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH Q ss_conf 899983--86-65899999999849889999831577654708999852111518 Q gi|254780936|r 115 HLVIFS--GD-GCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182) Q Consensus 115 ~~iLvS--GD-~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182) .+|.+| |. .+-+.+++.+|+.|.+++.++-.. ...|.+.||..+.+ T Consensus 90 lvI~iS~SG~T~e~i~a~~~a~~~ga~~i~iT~~~------~s~la~~~d~~i~~ 138 (329) T d1j5xa_ 90 LAFLFSRTGNTTEVLLANDVLKKRNHRTIGITIEE------ESRLAKESDLPLVF 138 (329) T ss_dssp EEEEECSSSCCHHHHHHHHHHHHTTEEEEEEESCT------TSHHHHHSSEEEEC T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCC------CCCHHHCCCCEEEE T ss_conf 59998668888578888886544455441103664------32001125503420 No 48 >d2qrra1 d.58.18.13 (A:2-98) Methionine import ATP-binding protein MetN {Vibrio parahaemolyticus [TaxId: 670]} Probab=25.19 E-value=18 Score=14.22 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=24.5 Q ss_pred EEEEECCCHH-HHHHHHHHHHCCCEEEEEE Q ss_conf 8999838665-8999999998498899998 Q gi|254780936|r 115 HLVIFSGDGC-FTTLVAALQRKVKKVTIVS 143 (182) Q Consensus 115 ~~iLvSGD~D-f~pli~~lr~~Gk~V~v~~ 143 (182) .++-++||.+ .-.+++.|+++|.+|++++ T Consensus 65 Lil~l~G~~~~~~~Al~~L~~~~i~vEvlg 94 (97) T d2qrra1 65 MVAELFGNEQDDSAAIEYLRENNVKVEVLG 94 (97) T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEE T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEE T ss_conf 999997899999999999998598699952 No 49 >d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Probab=24.22 E-value=19 Score=14.10 Aligned_cols=43 Identities=19% Similarity=0.129 Sum_probs=27.4 Q ss_pred EEEEEC-CC------HHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHC Q ss_conf 899983-86------65899999999849889999831577654708999852 Q gi|254780936|r 115 HLVIFS-GD------GCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQA 160 (182) Q Consensus 115 ~~iLvS-GD------~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~a 160 (182) .+|+++ |. .+...+++.+|+.|.+|+.+++.... . -.+|+..+ T Consensus 118 ~vivitdg~~~~~~~~~~~~~~~~l~~~gv~i~~Vgig~~~--~-~~~L~~ia 167 (202) T d1ijba_ 118 IALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHA--N-LKQIRLIE 167 (202) T ss_dssp EEEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEESTTS--C-HHHHHHHH T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCC--C-HHHHHHHH T ss_conf 57885346888642168999999999859968999857857--9-99999985 No 50 >d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]} Probab=24.09 E-value=19 Score=14.09 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=31.9 Q ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHH-CCCCE-EHHHHHHHHC Q ss_conf 9983866589999999984988999983157765470899985-21115-1899787622 Q gi|254780936|r 117 VIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQ-ADYFM-DLAYLKNEIA 174 (182) Q Consensus 117 iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~-ad~fi-~l~~l~~~i~ 174 (182) +|+=||+- .=+..+++.|.+++.+.............|.++ ||..| ++.+|...++ T Consensus 161 ~l~vgDs~--~dv~aA~~aG~~~i~v~~~~~~~~~~~~~l~~~~ad~vi~~l~eL~~ll~ 218 (222) T d2fdra1 161 VVVVEDSV--HGIHGARAAGMRVIGFTGASHTYPSHADRLTDAGAETVISRMQDLPAVIA 218 (222) T ss_dssp EEEEESSH--HHHHHHHHTTCEEEEECCSTTCCTTHHHHHHHHTCSEEESCGGGHHHHHH T ss_pred EEEECCCH--HHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCEEECCHHHHHHHHH T ss_conf 89975878--78999998499899983698787531778976799999999999999999 No 51 >d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} Probab=23.94 E-value=19 Score=14.07 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=28.6 Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEHHHHHHHHC Q ss_conf 6532999999999421158899983866589999999984988999983157765470899985211151899787622 Q gi|254780936|r 96 SSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDLAYLKNEIA 174 (182) Q Consensus 96 k~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l~~l~~~i~ 174 (182) ..+|..+|- +.....+| .++|.|||+.-- |....+--+. +..-++..-..++++++...++ T Consensus 156 ~EAdaq~A~--L~~~g~vd--~v~S~DsD~l~f-------G~~~vi~~~~-------~~~~~~~~~~~~~~~~il~~LG 216 (216) T d1ul1x2 156 SEAEASCAA--LVKAGKVY--AAATEDMDCLTF-------GSPVLMRHLT-------ASEAKKLPIQEFHLSRILQELG 216 (216) T ss_dssp SCHHHHHHH--HHHHTSSS--EEECSCTHHHHT-------TCSEEEECSS-------CCC-CCCCEEEEEHHHHHHHHT T ss_pred CHHHHHHHH--HHHCCCEE--EEECCCCCEECC-------CCCEEEEECC-------CCCCCCCCEEEEEHHHHHHHCC T ss_conf 058999999--98649369--998265101111-------8868988434-------6657877489999999997667 No 52 >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Probab=23.86 E-value=19 Score=14.06 Aligned_cols=12 Identities=25% Similarity=0.263 Sum_probs=6.1 Q ss_pred HHHHCCCEEEEE Q ss_conf 897559569753 Q gi|254780936|r 69 WLHYNGFQVVAK 80 (182) Q Consensus 69 ~l~~~g~~v~~~ 80 (182) .+...+++++.. T Consensus 100 ~~~~~~V~~i~G 111 (223) T d1ebda1 100 LLKGNKVEIVKG 111 (223) T ss_dssp HHHTTTCEEEES T ss_pred HHHCCCEEEECC T ss_conf 630461353112 No 53 >d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]} Probab=23.08 E-value=20 Score=13.97 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=43.0 Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH Q ss_conf 73146777579998897559569753458953788865435653299999999942115889998386658999999998 Q gi|254780936|r 55 DPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQR 134 (182) Q Consensus 55 ~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~ 134 (182) .......+...+.+.+...+........ ... ............+...+.+ ++|++++|.-...+++.+++ T Consensus 134 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~~-~ai~~~~d~~a~g~~~al~~ 203 (271) T d2dria_ 134 GTSAARERGEGFQQAVAAHKFNVLASQP---ADF------DRIKGLNVMQNLLTAHPDV-QAVFAQNDEMALGALRALQT 203 (271) T ss_dssp TCHHHHHHHHHHHHHHHHHTCEEEEEEE---CTT------CHHHHHHHHHHHHHHCTTC-CEEEESSHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCEEE---ECC------HHHHHHHHHHHHHHCCCCC-EEEECCCHHHHHHHHHHHHH T ss_conf 8778999987488775123344421000---010------2332000577887415685-07961567878899999998 Q ss_pred CCCE-EEEEEEE Q ss_conf 4988-9999831 Q gi|254780936|r 135 KVKK-VTIVSTV 145 (182) Q Consensus 135 ~Gk~-V~v~~~~ 145 (182) .|.+ +.++++. T Consensus 204 ~g~~di~iig~d 215 (271) T d2dria_ 204 AGKSDVMVVGFD 215 (271) T ss_dssp HTCCSCEEEEEE T ss_pred HCCCCCCEEECC T ss_conf 389987667776 No 54 >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Probab=22.78 E-value=20 Score=13.93 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=9.0 Q ss_pred CCEEEEECCCHHHHH Q ss_conf 588999838665899 Q gi|254780936|r 113 LEHLVIFSGDGCFTT 127 (182) Q Consensus 113 ~d~~iLvSGD~Df~p 127 (182) .+.++|.+|..=++| T Consensus 132 ~~~~~iatG~~p~vp 146 (221) T d3grsa1 132 APHILIATGGMPSTP 146 (221) T ss_dssp CSCEEECCCEEECCC T ss_pred CCEEEEECCCCCCCC T ss_conf 313588248613478 No 55 >d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]} Probab=22.76 E-value=20 Score=13.93 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=47.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--H-CCCCEEEEECCCHHHHHHH Q ss_conf 887314677757999889755956975345895378886543565329999999994--2-1158899983866589999 Q gi|254780936|r 53 VGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ--S-EGLEHLVIFSGDGCFTTLV 129 (182) Q Consensus 53 ~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~--a-~~~d~~iLvSGD~Df~pli 129 (182) +........+...|.+.+...+....... ....+..-...++.. + ..--++|++++|.--..++ T Consensus 127 ~~~~~~~~~R~~g~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~~~~a~~~~ 193 (271) T d1jyea_ 127 PLSSVSARLRLAGWHKYLTRNQIQPIAER-------------EGDWSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAM 193 (271) T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCCCSEEE-------------ECCSSHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCEE-------------CCCCCCCCCCCHHHHHHHCCCCCCHHHCCCHHHHHHHH T ss_conf 44551577656788777664135421000-------------01111112442022333124565211123204445787 Q ss_pred HHHHHCCCE----EEEEEEE Q ss_conf 999984988----9999831 Q gi|254780936|r 130 AALQRKVKK----VTIVSTV 145 (182) Q Consensus 130 ~~lr~~Gk~----V~v~~~~ 145 (182) +.+++.|.+ +.++++. T Consensus 194 ~~l~~~g~~vp~di~Ii~~d 213 (271) T d1jyea_ 194 RAITESGLRVGADISVVGYD 213 (271) T ss_dssp HHHHHTTCCBTTTBEEECSB T ss_pred HHHHHHHCCCCCEEEEEEEE T ss_conf 86787505688557887652 No 56 >d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Probab=22.37 E-value=21 Score=13.88 Aligned_cols=29 Identities=7% Similarity=0.148 Sum_probs=24.2 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEE Q ss_conf 89998386658999999998498899998 Q gi|254780936|r 115 HLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182) Q Consensus 115 ~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182) .-|++++|+|+-.+++..+..|..+-+.. T Consensus 54 e~v~l~~d~dl~E~~~~a~~~~~~irl~v 82 (85) T d2bkfa1 54 EEVSINSQGEYEEALKMAVKQGNQLQMQV 82 (85) T ss_dssp CEEEECSHHHHHHHHHHHHHTTTEEEEEE T ss_pred CEEEEECHHHHHHHHHHHHCCCCEEEEEE T ss_conf 98998068889999999866898899999 No 57 >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} Probab=22.16 E-value=21 Score=13.85 Aligned_cols=20 Identities=35% Similarity=0.363 Sum_probs=15.3 Q ss_pred HHHHHHHHHHHHHCCCEEEE Q ss_conf 77757999889755956975 Q gi|254780936|r 60 FSPLHPLLDWLHYNGFQVVA 79 (182) Q Consensus 60 ~~~~~~~~~~l~~~g~~v~~ 79 (182) ....+.+.+++++.|++|+. T Consensus 78 ~~df~~Lv~~aH~~GIkVil 97 (394) T d2d3na2 78 RSQLQAAVTSLKNNGIQVYG 97 (394) T ss_dssp HHHHHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHHHHHHCCCEEEE T ss_conf 99999999999987998999 No 58 >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} Probab=22.03 E-value=21 Score=13.83 Aligned_cols=23 Identities=13% Similarity=-0.003 Sum_probs=16.0 Q ss_pred CCHHHHHHHHHHHHCCCEEEEEE Q ss_conf 86658999999998498899998 Q gi|254780936|r 121 GDGCFTTLVAALQRKVKKVTIVS 143 (182) Q Consensus 121 GD~Df~pli~~lr~~Gk~V~v~~ 143 (182) +..||..+|+.+.++|.+|++=. T Consensus 85 t~~d~~~LV~~aH~~GikVIlD~ 107 (361) T d1mxga2 85 SKEELVRLIQTAHAYGIKVIADV 107 (361) T ss_dssp CHHHHHHHHHHHHHTTCEEEEEE T ss_pred CHHHHHHHHHHHHHCCCEEEEEE T ss_conf 99999999999997799799986 No 59 >d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=21.96 E-value=21 Score=13.83 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=18.2 Q ss_pred CCCEEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHCC-EEEEEEEEECCCC Q ss_conf 88718999807899999985087679899999985179-2999999730688 Q gi|254780936|r 4 PREKIALFIDGANLYASSKALGFDIDYRKLLKAFRSRA-IVIRAYYYTTVVG 54 (182) Q Consensus 4 ~~~rvaIfID~~Nl~~~~~~~~~~~d~~~L~~~l~~~~-~l~~~~~y~~~~~ 54 (182) ..+||.|-+-|+- |=..|+..+.+.+ ++.......+... T Consensus 9 ~gkKv~vA~SGGv------------DSsvll~lL~~~g~~v~~~~~~~~~~~ 48 (188) T d1k92a1 9 VGQRIGIAFSGGL------------DTSAALLWMRQKGAVPYAYTANLGQPD 48 (188) T ss_dssp TTSEEEEECCSSH------------HHHHHHHHHHHTTCEEEEEEEECCCTT T ss_pred CCCEEEEEECCCH------------HHHHHHHHHHHCCCCCEEEEEECCCCC T ss_conf 9998999957977------------999999999985994739851057970 No 60 >d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Probab=21.94 E-value=21 Score=13.82 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=29.3 Q ss_pred CEEEEECC-C-----HHHHHHHHHHHHCCCEEEEEEEECCCCCCCH-HHHHHHC Q ss_conf 88999838-6-----6589999999984988999983157765470-8999852 Q gi|254780936|r 114 EHLVIFSG-D-----GCFTTLVAALQRKVKKVTIVSTVLSDPSMAS-DQLRRQA 160 (182) Q Consensus 114 d~~iLvSG-D-----~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S-~~L~~~a 160 (182) ..+||+|- . .....++..+++.|.+++.+++......... .+|+..| T Consensus 108 kvvvliTDG~~~~~~~~~~~~~~~~~~~gv~i~~VGi~~~~~~~~~~~~L~~ia 161 (194) T d1mf7a_ 108 KILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIA 161 (194) T ss_dssp EEEEEEESSCCBSCSSCGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHS T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHH T ss_conf 599998268989980559999999998599059980577666525699999996 No 61 >g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=21.94 E-value=21 Score=13.86 Aligned_cols=35 Identities=23% Similarity=0.475 Sum_probs=22.9 Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEHH Q ss_conf 8999999998498899998315776547089998521115189 Q gi|254780936|r 125 FTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDLA 167 (182) Q Consensus 125 f~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l~ 167 (182) ++.+++.+.+.|.+|++++ + +.++.+.||+.+.++ T Consensus 246 l~~~l~~~~~~~~qviv~T----H----~~~~~~~~D~ii~l~ 280 (292) T g1f2t.1 246 LITIMERYLKKIPQVILVS----H----DEELKDAADHVIRIS 280 (292) T ss_dssp HHHHHHHTGGGSSEEEEEE----S----CGGGGGGCSEEEEEE T ss_pred HHHHHHHHHHCCCEEEEEE----E----CHHHHHHCCEEEEEE T ss_conf 9999999983799999996----2----089998599999997 No 62 >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} Probab=21.89 E-value=21 Score=13.82 Aligned_cols=19 Identities=5% Similarity=0.190 Sum_probs=11.5 Q ss_pred HHHHHHHHHHHHCCCEEEE Q ss_conf 7757999889755956975 Q gi|254780936|r 61 SPLHPLLDWLHYNGFQVVA 79 (182) Q Consensus 61 ~~~~~~~~~l~~~g~~v~~ 79 (182) ...+.+.+++++.|++|+. T Consensus 65 ~dfk~LV~~aH~~GI~Vil 83 (354) T d1g94a2 65 AQFIDMVNRCSAAGVDIYV 83 (354) T ss_dssp HHHHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHHHHCCCCEEEE T ss_conf 9999999998416760699 No 63 >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} Probab=21.83 E-value=21 Score=13.81 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=8.4 Q ss_pred HHHHHHHHHHCCCEEEE Q ss_conf 57999889755956975 Q gi|254780936|r 63 LHPLLDWLHYNGFQVVA 79 (182) Q Consensus 63 ~~~~~~~l~~~g~~v~~ 79 (182) .+.+.+++++.|+.|+. T Consensus 95 f~~LV~~aH~~GI~VIl 111 (357) T d1gcya2 95 LRQAASALGGAGVKVLY 111 (357) T ss_dssp HHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHHHCCCEEEE T ss_conf 99999999963873789 No 64 >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Probab=21.41 E-value=22 Score=13.76 Aligned_cols=10 Identities=10% Similarity=0.255 Sum_probs=5.3 Q ss_pred HHCCCEEEEE Q ss_conf 7559569753 Q gi|254780936|r 71 HYNGFQVVAK 80 (182) Q Consensus 71 ~~~g~~v~~~ 80 (182) ...|++++.. T Consensus 115 ~~~gV~vi~g 124 (238) T d1aoga1 115 DTEGLEFFLG 124 (238) T ss_dssp HSTTEEEEES T ss_pred CCCCCEEEEE T ss_conf 0466389999 No 65 >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} Probab=21.26 E-value=22 Score=13.74 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=26.6 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEE Q ss_conf 1158899983866589999999984988999 Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTI 141 (182) Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v 141 (182) +++|.+++.|...-..+.+..+-+.|+.|.+ T Consensus 61 ~~iD~V~I~tp~~~H~~~~~~al~~gk~V~~ 91 (167) T d1xeaa1 61 YGVDAVMIHAATDVHSTLAAFFLHLGIPTFV 91 (167) T ss_dssp GCCSEEEECSCGGGHHHHHHHHHHTTCCEEE T ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 4432001333211112222111221100225 No 66 >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=21.00 E-value=19 Score=14.16 Aligned_cols=51 Identities=6% Similarity=-0.048 Sum_probs=30.0 Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCC Q ss_conf 42115889998386658999999998498899998315776547089998521 Q gi|254780936|r 109 QSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQAD 161 (182) Q Consensus 109 ~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad 161 (182) .+...|.++++.-+.+..+++..+...-.+.++-.. +....+++.|.+.+. T Consensus 53 ~~~~~diIi~~v~~~~~~~~~~~~~~~~~~~~id~s--t~~p~~~~~l~~~~~ 103 (152) T d1i36a2 53 DVYSCPVVISAVTPGVALGAARRAGRHVRGIYVDIN--NISPETVRMASSLIE 103 (152) T ss_dssp HHHTSSEEEECSCGGGHHHHHHHHHTTCCSEEEECS--CCCHHHHHHHHHHCS T ss_pred HHHHCCEEEEEECCCHHHHHHHHHCCCCCCEEECCC--CCCHHHHHHHHHHHH T ss_conf 986157289983181579999862056874464367--679999999999975 No 67 >d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Probab=20.93 E-value=9.1 Score=16.10 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=25.7 Q ss_pred CCCHHHHHHHHHHHHCCC-CEEEEECCC---HHHHHHHHHHHHCCCEEEEEE Q ss_conf 653299999999942115-889998386---658999999998498899998 Q gi|254780936|r 96 SSMDVELAVDAFEQSEGL-EHLVIFSGD---GCFTTLVAALQRKVKKVTIVS 143 (182) Q Consensus 96 k~~Dv~laiD~~~~a~~~-d~~iLvSGD---~Df~pli~~lr~~Gk~V~v~~ 143 (182) |++-+.=+.-++...... .+++|+.|+ .||.++.+.++...+.|++++ T Consensus 22 KaTn~~a~~~Al~~~~~~~~iiLI~GG~~K~~d~~~L~~~i~~~~~~v~~~G 73 (140) T d2jfga2 22 KATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFG 73 (140) T ss_dssp TCCSHHHHHHHHTTCCCSSCEEEEEESBCTTCCCGGGGGGSCSSSEEEEEES T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHC T ss_conf 4245889999975552257338986045433321366655201220100000 No 68 >d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]} Probab=20.62 E-value=22 Score=13.65 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=13.4 Q ss_pred ECCCHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 83866589999999984988999983 Q gi|254780936|r 119 FSGDGCFTTLVAALQRKVKKVTIVST 144 (182) Q Consensus 119 vSGD~Df~pli~~lr~~Gk~V~v~~~ 144 (182) ++.+|-.+.++..+-+.||+|.++.+ T Consensus 62 ~a~~S~Ii~aLi~Aa~nGK~Vtv~vE 87 (187) T d1xdpa3 62 VAKDSRIIDSMIHAAHNGKKVTVVVE 87 (187) T ss_dssp CCTTCHHHHHHHHHHHTTCEEEEEEC T ss_pred ECCCCCHHHHHHHHHHCCCEEEEEEE T ss_conf 16986379999999976998999982 No 69 >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} Probab=20.56 E-value=23 Score=13.65 Aligned_cols=85 Identities=9% Similarity=0.148 Sum_probs=48.4 Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE Q ss_conf 79998897559569753458953788865435653299999999942115889998386658999999998498899998 Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182) Q Consensus 64 ~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182) ......|...||.+...+....... ....+.-. +..+.-..+|.++++..-..-..+++.+.+.|.+...+. T Consensus 30 ~~v~~~L~~~g~~~~~v~~~~~~~~--i~g~~~~~------~l~~i~~~iD~v~v~~p~~~v~~~v~~~~~~g~k~i~~q 101 (136) T d1iuka_ 30 HYVPRYLREQGYRVLPVNPRFQGEE--LFGEEAVA------SLLDLKEPVDILDVFRPPSALMDHLPEVLALRPGLVWLQ 101 (136) T ss_dssp HHHHHHHHHTTCEEEEECGGGTTSE--ETTEECBS------SGGGCCSCCSEEEECSCHHHHTTTHHHHHHHCCSCEEEC T ss_pred HHHHHHHHCCCCCCEEEEECCCCCE--EECEECCC------CHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEE T ss_conf 8999999638997148873035433--40000346------444405787357884147889999999985178859985 Q ss_pred EECCCCCCCHHHHHHHCC Q ss_conf 315776547089998521 Q gi|254780936|r 144 TVLSDPSMASDQLRRQAD 161 (182) Q Consensus 144 ~~~~~~~~~S~~L~~~ad 161 (182) .+..+.++.+.|. T Consensus 102 -----~G~~~~e~~~~a~ 114 (136) T d1iuka_ 102 -----SGIRHPEFEKALK 114 (136) T ss_dssp -----TTCCCHHHHHHHH T ss_pred -----CCCCCHHHHHHHH T ss_conf -----5855899999999 No 70 >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} Probab=20.53 E-value=23 Score=13.64 Aligned_cols=19 Identities=5% Similarity=0.207 Sum_probs=13.1 Q ss_pred HHHHHHHHHHHHCCCEEEE Q ss_conf 7757999889755956975 Q gi|254780936|r 61 SPLHPLLDWLHYNGFQVVA 79 (182) Q Consensus 61 ~~~~~~~~~l~~~g~~v~~ 79 (182) .-.+.+.+++++.|++|+. T Consensus 77 ~dfk~Lv~~aH~~GI~VIl 95 (403) T d1hx0a2 77 NEFRDMVTRCNNVGVRIYV 95 (403) T ss_dssp HHHHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHHHHHCCCEEEE T ss_conf 9999999999866997999 No 71 >d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]} Probab=20.18 E-value=23 Score=13.59 Aligned_cols=49 Identities=20% Similarity=0.158 Sum_probs=32.8 Q ss_pred CCHHHHHHHHHHH----HCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEEEEC Q ss_conf 5329999999994----2115889998386658999999998498--899998315 Q gi|254780936|r 97 SMDVELAVDAFEQ----SEGLEHLVIFSGDGCFTTLVAALQRKVK--KVTIVSTVL 146 (182) Q Consensus 97 ~~Dv~laiD~~~~----a~~~d~~iLvSGD~Df~pli~~lr~~Gk--~V~v~~~~~ 146 (182) ..|..-+..++.. -+.+| +|+.++|.=..-+++.+++.|+ .+.++++.. T Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~-ai~~~~d~~a~g~~~al~~~g~~~di~ivg~D~ 228 (288) T d1guda_ 174 DWDRIKALDVATNVLQRNPNIK-AIYCANDTMAMGVAQAVANAGKTGKVLVVGTDG 228 (288) T ss_dssp TTCHHHHHHHHHHHHHHCTTCC-EEEESSHHHHHHHHHHHHHTTCTTTSEEEEESC T ss_pred CCHHHHHHHHHHHHHCCCCCCC-EEECCCCHHHHHHHHHHHHCCCCCCEEEEECCC T ss_conf 1025679988887640576521-344148789999999999759998749995579 Done!